DEK_C domain-containing protein

Overview
NameDEK_C domain-containing protein
Smed IDSMED30009265
Length (bp)1288
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of DEK_C domain-containing protein (SMED30009265) t-SNE clustered cells

Violin plots show distribution of expression levels for DEK_C domain-containing protein (SMED30009265) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of DEK_C domain-containing protein (SMED30009265) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for DEK_C domain-containing protein (SMED30009265) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30009265

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30009265h1SMcG0016479 SmedASXL_014749SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30009265h1SMcG0016479 SmedASXL_014749SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of DEK_C domain-containing protein vs. Ensembl Zebrafish
Match: dek (DEK proto-oncogene [Source:ZFIN;Acc:ZDB-GENE-060512-191])

HSP 1 Score: 49.6766 bits (117), Expect = 4.347e-6
Identity = 35/118 (29.66%), Postives = 59/118 (50.00%), Query Frame = 2 
Query:  215 GNGIKFGDIKRIQDAIHRSKLNGELSKNMHLLCYRTIGKAGKRLSSIKKFNGFDENDESE-FKKRLSIVDKMKMDDLKLICDLLNVHPSGKMKKDVALG--LVEYLRCPFETGSEIFR 559
            G G K GDI RI  +I   KL   L K +H + Y   G A     +++ FNGF   ++S+ + K++  V ++    LK IC  L++  SG     + L   ++++L  P  +G  + +
Sbjct:   68 GRGDKLGDIARINHSI--GKLKAPLLKPLHKILYDRPGAASTLRKNLRLFNGFPFKEDSDLYNKKMEKVKRLPKKLLKTICQTLDLERSGTQ---IVLSERIMKFLAQPTNSGKPVLK 180
[Close]
BLAST of DEK_C domain-containing protein vs. TrEMBL
Match: A0A1W4XLF1 (protein DEK isoform X2 OS=Agrilus planipennis OX=224129 GN=LOC108742789 PE=4 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 7.313e-11
Identity = 51/140 (36.43%), Postives = 83/140 (59.29%), Query Frame = 2 
Query:  128 RIRKSVSRLSDVYDKTFEMKSDRIIKPITGNGIKFGDIKRIQDAIHRSKLNGELSKNMHLLCYRTIGKAGKRLSSIKKFNGFD-ENDESEFKKRLSIVDKMKMDDLKLICDLLNVHPSGKMKKDVALGLVEYLRCPFETG 544
            R RK V+R ++ ++ + E+    I +   G+GI  G+I RI  +I R K N +L K +H L Y+  GK  K  ++IK+FNGFD E D  E+KK+L+ + K  +  LK IC++L++   G  K +V+  ++ +L  P + G
Sbjct:  117 RERKKVNRFNEEFNDSKELSKLEIPE---GSGIPLGEIPRIDASISRFK-NDDL-KVLHRLLYKCQGKTTKTKANIKRFNGFDFEKDSEEYKKKLTWIQKFDLKQLKSICEMLDLEKKG-TKDEVSERIIIFLMEPQDIG 250
[Close]
BLAST of DEK_C domain-containing protein vs. TrEMBL
Match: A0A1W4XBW7 (protein DEK isoform X1 OS=Agrilus planipennis OX=224129 GN=LOC108742789 PE=4 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 8.685e-11
Identity = 51/140 (36.43%), Postives = 83/140 (59.29%), Query Frame = 2 
Query:  128 RIRKSVSRLSDVYDKTFEMKSDRIIKPITGNGIKFGDIKRIQDAIHRSKLNGELSKNMHLLCYRTIGKAGKRLSSIKKFNGFD-ENDESEFKKRLSIVDKMKMDDLKLICDLLNVHPSGKMKKDVALGLVEYLRCPFETG 544
            R RK V+R ++ ++ + E+    I +   G+GI  G+I RI  +I R K N +L K +H L Y+  GK  K  ++IK+FNGFD E D  E+KK+L+ + K  +  LK IC++L++   G  K +V+  ++ +L  P + G
Sbjct:  117 RERKKVNRFNEEFNDSKELSKLEIPE---GSGIPLGEIPRIDASISRFK-NDDL-KVLHRLLYKCQGKTTKTKANIKRFNGFDFEKDSEEYKKKLTWIQKFDLKQLKSICEMLDLEKKG-TKDEVSERIIIFLMEPQDIG 250
[Close]
BLAST of DEK_C domain-containing protein vs. TrEMBL
Match: A0A0T6BH16 (SAP domain-containing protein (Fragment) OS=Oryctes borbonicus OX=1629725 GN=AMK59_1579 PE=4 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.257e-10
Identity = 57/160 (35.62%), Postives = 89/160 (55.62%), Query Frame = 2 
Query:  128 RIRKSVSRLSDVYDKTFEMKSDRIIKPITGNGIKFGDIKRIQDAIHRSKLNGELSKNMHLLCYRTIGKAGKRLSSIKKFNGFD-ENDESEFKKRLSIVDKMKMDDLKLICDLLNVHPSGKMKKDVALGLVEYLRCPFETGSEIF-----RTSALRRKIKG 589
            R RK V R +D   +  + K    ++  TG G+  GDI RI  +I R K N +L K +H L Y+T GK      +IKKFNGFD   D  E+ K+LS V K ++  LK +C++L++   G  K+++   +VE+L  P ++G  +      RT+A++   +G
Sbjct:  129 RERKKVQRFNDNLPR--DSKEVTKLEVPTGRGLALGDIPRIDASISRFK-NDDL-KLLHRLLYKTPGKTTMIKKNIKKFNGFDFAKDSDEYGKKLSSVQKFEVKQLKSVCEMLDLEKKGN-KEEIGERIVEFLIEPKDSGKPVGGGRPKRTAAVKANNRG 283
[Close]
BLAST of DEK_C domain-containing protein vs. TrEMBL
Match: V5I938 (Protein DEK (Fragment) OS=Anoplophora glabripennis OX=217634 GN=DEK PE=4 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 6.162e-10
Identity = 54/157 (34.39%), Postives = 91/157 (57.96%), Query Frame = 2 
Query:  125 KRIRKSVSRLSDVYDKTFEMKSDRIIKPITGNGIKFGDIKRIQDAIHRSKLNGELSKNMHLLCYRTIGKAGKRLSSIKKFNGFD-ENDESEFKKRLSIVDKMKMDDLKLICDLLNVHPSGKMKKDVALGLVEYLRCPFETG-SEIFRTSALRRKIKG 589
            KR RK+V RL ++  +  E K    ++ ++G+G   GDI R+  +I R K N +L K +H L Y+ +GK      +I+KFNGFD   D  E+ K++S   K ++  LK IC++L++  SG  K D+   ++++L  P ++G     RT+A++   +G
Sbjct:  144 KRERKNVQRL-EIASEVKETK----VEFVSGSGSSLGDIPRVDASISRFK-NDDL-KLLHRLLYKVVGKNTLIKKNIRKFNGFDFSKDSEEYTKKVSFAHKFEIKQLKSICEMLDLPKSG-TKDDIVDRIIDFLLEPKDSGRGRPKRTAAVKANNRG 292
[Close]
BLAST of DEK_C domain-containing protein vs. TrEMBL
Match: A0A482W7A9 (DEK (Fragment) OS=Asbolus verrucosus OX=1661398 GN=BDFB_007726 PE=4 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.747e-9
Identity = 53/161 (32.92%), Postives = 91/161 (56.52%), Query Frame = 2 
Query:  125 KRIRKSVSRLSDVYDKTFEMKSDRIIKPITGNGIKFGDIKRIQDAIHRSKLNGELSKNMHLLCYRTIGKAGKRLSSIKKFNGFD-ENDESEFKKRLSIVDKMKMDDLKLICDLLNVHPSGKMKKDVALGLVEYLRCPFETGSEIF-----RTSALRRKIKG 589
            KR RK+V R ++ +  + + K    I    G+G   G+I RI  +I R K N ++ K  H + ++T GK+     +IKKFNGFD + D  E+ K+++ + K ++  LK IC++L++  +G  K D+   ++E+L  P ++G  I      RT+A+R   +G
Sbjct:  134 KRERKNVQRFNEEF--SSDSKESSKIDIPNGSGTALGNIPRIDASISRFK-NDDM-KLFHRILFKTTGKSTMIKKNIKKFNGFDFKKDSDEYTKKVASMHKCEVKQLKSICEMLDLQKTG-SKDDIIERIIEFLLDPKDSGKAIGGGRPKRTAAVRANNRG 289
[Close]
BLAST of DEK_C domain-containing protein vs. Ensembl Sea Lamprey
Match: DEK (DEK proto-oncogene [Source:HGNC Symbol;Acc:HGNC:2768])

HSP 1 Score: 45.8246 bits (107), Expect = 7.350e-6
Identity = 21/50 (42.00%), Postives = 31/50 (62.00%), Query Frame = 1 
Query:  919 LKEKITAILSGADLSKITLNQVCDGVVDQFPDVDLVLRRPHIKSLVKQVI 1068
            L++ +  +L GADL  +T+  VC  V  +FPD DL  R+  IK  VK++I
Sbjct:  185 LRQAVRLLLDGADLESVTMKHVCKEVYAKFPDFDLTERKDLIKQAVKELI 234
[Close]
BLAST of DEK_C domain-containing protein vs. Ensembl Sea Lamprey
Match: DEK (DEK proto-oncogene [Source:HGNC Symbol;Acc:HGNC:2768])

HSP 1 Score: 45.4394 bits (106), Expect = 8.158e-6
Identity = 21/50 (42.00%), Postives = 31/50 (62.00%), Query Frame = 1 
Query:  919 LKEKITAILSGADLSKITLNQVCDGVVDQFPDVDLVLRRPHIKSLVKQVI 1068
            L++ +  +L GADL  +T+  VC  V  +FPD DL  R+  IK  VK++I
Sbjct:  188 LRQAVRLLLDGADLESVTMKHVCKEVYAKFPDFDLTERKDLIKQAVKELI 237
[Close]
BLAST of DEK_C domain-containing protein vs. Planmine SMEST
Match: SMESG000049193.1 (SMESG000049193.1)

HSP 1 Score: 400.208 bits (1027), Expect = 7.202e-156
Identity = 218/219 (99.54%), Postives = 218/219 (99.54%), Query Frame = 2 
Query:   68 MENENVIESVNSDINNSREKRIRKSVSRLSDVYDKTFEMKSDRIIKPITGNGIKFGDIKRIQDAIHRSKLNGELSKNMHLLCYRTIGKAGKRLSSIKKFNGFDENDESEFKKRLSIVDKMKMDDLKLICDLLNVHPSGKMKKDVALGLVEYLRCPFETGSEIFRTSALRRKIKGGKNKPTVKSVKKTKALXXXXXXXXXXXXXXXXIEDGIKSGDEISE 724
            MENENVIESVNSDINNSREKRIRKSVSRLSDVYDKTFEMKSDRIIKPITGNGIKFGDIKRIQDAIHRSKLNGELSKNMHLLCYRTIGKAGKRLSSIKKFNGFDENDESEFKKRLSIVDKMKMDDLKLICDLLNVHPSGKMKKDVALGLVEYLRCPFETGSEIFRTSALRRKIKGGKNKPTVKSVKKTKALSSNDDDDVSMDSSVSNIEDGIKS DEISE
Sbjct:    1 MENENVIESVNSDINNSREKRIRKSVSRLSDVYDKTFEMKSDRIIKPITGNGIKFGDIKRIQDAIHRSKLNGELSKNMHLLCYRTIGKAGKRLSSIKKFNGFDENDESEFKKRLSIVDKMKMDDLKLICDLLNVHPSGKMKKDVALGLVEYLRCPFETGSEIFRTSALRRKIKGGKNKPTVKSVKKTKALSSNDDDDVSMDSSVSNIEDGIKSSDEISE 219

HSP 2 Score: 170.629 bits (431), Expect = 7.202e-156
Identity = 117/119 (98.32%), Postives = 118/119 (99.16%), Query Frame = 1 
Query:  724 NDQIQRETPEKSNGKSIKKEKASNEKQNYVPXXXXXXXXXXXXVPNKXXXXXXXXXXXXXXXXXLLKEKITAILSGADLSKITLNQVCDGVVDQFPDVDLVLRRPHIKSLVKQVIDQSS 1080
            NDQIQRETPEKSNGKSIKKEKASNEKQN+VPKSKKSEREKSIEVPNKE EHSFSSDSHSEISDELLKEKITAILSGADLSKITLNQVCDGVVDQFPDVDLVLRRPHIKSLVKQVIDQSS
Sbjct:  220 NDQIQRETPEKSNGKSIKKEKASNEKQNHVPKSKKSEREKSIEVPNKEVEHSFSSDSHSEISDELLKEKITAILSGADLSKITLNQVCDGVVDQFPDVDLVLRRPHIKSLVKQVIDQSS 338
[Close]
BLAST of DEK_C domain-containing protein vs. Planmine SMEST
Match: SMESG000018659.1 (SMESG000018659.1)

HSP 1 Score: 162.155 bits (409), Expect = 7.986e-46
Identity = 84/107 (78.50%), Postives = 89/107 (83.18%), Query Frame = 2 
Query:   68 MENENVIESVNSDINNSREKRIRKSVSRLSDVYDKTFEMKSDRIIKPITGNGIKFGDIKRIQDAIHRSKLNGELSKNMHLLCYRTIGKAGKRLSSIKKFNGFDENDE 388
            MENE+VIESVNSDIN SREK I K           TFEMKSDRIIKPITGNGIKFG IKRIQD I RSKLNGELSKN++LLCYRT GKAGKRLS+IKKFNGFDE+DE
Sbjct:    1 MENEDVIESVNSDINKSREKLIHK-----------TFEMKSDRIIKPITGNGIKFGYIKRIQDEILRSKLNGELSKNVYLLCYRTTGKAGKRLSAIKKFNGFDEDDE 96
[Close]
BLAST of DEK_C domain-containing protein vs. Planmine SMEST
Match: SMESG000074552.1 (SMESG000074552.1)

HSP 1 Score: 146.362 bits (368), Expect = 5.766e-42
Identity = 74/90 (82.22%), Postives = 78/90 (86.67%), Query Frame = 2 
Query:  119 REKRIRKSVSRLSDVYDKTFEMKSDRIIKPITGNGIKFGDIKRIQDAIHRSKLNGELSKNMHLLCYRTIGKAGKRLSSIKKFNGFDENDE 388
            REKRIRK           TFE+KSDRIIKPITGNGIKFG +KRIQDAIHRSKLNGELSKN+HLLCYRTIGKAGKRLSSIKKFNGFDE+DE
Sbjct:   31 REKRIRK-----------TFEIKSDRIIKPITGNGIKFGYVKRIQDAIHRSKLNGELSKNVHLLCYRTIGKAGKRLSSIKKFNGFDEDDE 109
[Close]
BLAST of DEK_C domain-containing protein vs. Planmine SMEST
Match: SMESG000045951.1 (SMESG000045951.1)

HSP 1 Score: 142.895 bits (359), Expect = 4.490e-39
Identity = 74/90 (82.22%), Postives = 76/90 (84.44%), Query Frame = 2 
Query:  119 REKRIRKSVSRLSDVYDKTFEMKSDRIIKPITGNGIKFGDIKRIQDAIHRSKLNGELSKNMHLLCYRTIGKAGKRLSSIKKFNGFDENDE 388
            REKRIRK           TFEMKSDRIIKPITGNGIKFG IKRIQDAIHRSKLNGELSKN+ LLCYRTIGKAGKRLSSIKKF GFDE+DE
Sbjct:  125 REKRIRK-----------TFEMKSDRIIKPITGNGIKFGYIKRIQDAIHRSKLNGELSKNVKLLCYRTIGKAGKRLSSIKKFYGFDEDDE 203
[Close]
BLAST of DEK_C domain-containing protein vs. Planmine SMEST
Match: SMESG000017493.1 (SMESG000017493.1)

HSP 1 Score: 134.42 bits (337), Expect = 2.374e-38
Identity = 65/72 (90.28%), Postives = 68/72 (94.44%), Query Frame = 2 
Query:  173 TFEMKSDRIIKPITGNGIKFGDIKRIQDAIHRSKLNGELSKNMHLLCYRTIGKAGKRLSSIKKFNGFDENDE 388
            T EMKSD IIKPIT NGIKFGDIK+IQD+IHRSKLNGELSKN+HLLCYRTIGKAGKRLSSIKKFNGFDE DE
Sbjct:    2 TLEMKSDSIIKPITCNGIKFGDIKQIQDSIHRSKLNGELSKNVHLLCYRTIGKAGKRLSSIKKFNGFDEVDE 73
The following BLAST results are available for this feature:
BLAST of DEK_C domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of DEK_C domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of DEK_C domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of DEK_C domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
dek4.347e-629.66DEK proto-oncogene [Source:ZFIN;Acc:ZDB-GENE-06051... [more]
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BLAST of DEK_C domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of DEK_C domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of DEK_C domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of DEK_C domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A1W4XLF17.313e-1136.43protein DEK isoform X2 OS=Agrilus planipennis OX=2... [more]
A0A1W4XBW78.685e-1136.43protein DEK isoform X1 OS=Agrilus planipennis OX=2... [more]
A0A0T6BH161.257e-1035.63SAP domain-containing protein (Fragment) OS=Orycte... [more]
V5I9386.162e-1034.39Protein DEK (Fragment) OS=Anoplophora glabripennis... [more]
A0A482W7A94.747e-932.92DEK (Fragment) OS=Asbolus verrucosus OX=1661398 GN... [more]
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BLAST of DEK_C domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of DEK_C domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 2
Match NameE-valueIdentityDescription
DEK7.350e-642.00DEK proto-oncogene [Source:HGNC Symbol;Acc:HGNC:27... [more]
DEK8.158e-642.00DEK proto-oncogene [Source:HGNC Symbol;Acc:HGNC:27... [more]
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BLAST of DEK_C domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of DEK_C domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of DEK_C domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of DEK_C domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000049193.17.202e-15699.54SMESG000049193.1[more]
SMESG000018659.17.986e-4678.50SMESG000018659.1[more]
SMESG000074552.15.766e-4282.22SMESG000074552.1[more]
SMESG000045951.14.490e-3982.22SMESG000045951.1[more]
SMESG000017493.12.374e-3890.28SMESG000017493.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30009265 ID=SMED30009265|Name=DEK_C domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1288bp
TACATATCAAACGGCCAGAAATTTGTTGATATAAGTGAATATTTTGAATT
TTCAAATTTTATTTAATATGGAAAATGAAAATGTTATTGAATCTGTTAAT
TCGGATATTAATAATAGTAGAGAGAAACGTATTCGTAAATCTGTTAGTCG
CCTAAGTGATGTCTATGACAAAACGTTTGAAATGAAATCGGATCGTATTA
TAAAGCCTATCACAGGAAATGGTATTAAATTTGGAGATATTAAACGAATT
CAAGATGCCATTCATCGAAGTAAATTAAATGGTGAATTATCAAAGAACAT
GCATTTGCTTTGCTACAGAACAATTGGTAAAGCTGGAAAAAGATTGAGTT
CAATTAAGAAATTCAACGGCTTTGATGAAAATGATGAAAGTGAATTTAAG
AAAAGATTATCTATTGTTGACAAAATGAAGATGGATGATCTGAAATTGAT
TTGTGACTTGTTAAATGTTCATCCTAGTGGGAAAATGAAAAAAGATGTTG
CTCTGGGATTAGTCGAATATTTACGATGTCCATTTGAAACTGGATCAGAA
ATCTTCAGAACGAGTGCATTAAGACGAAAAATCAAAGGCGGAAAAAACAA
ACCGACAGTTAAATCGGTCAAGAAAACGAAAGCTTTATCTTCGAATGATG
ATGATGATGTTTCCATGGATTCCTCGGTCAGTAATATTGAGGACGGCATC
AAATCCGGTGATGAAATCTCGGAAATGATCAAATCCAGAGAGAAACTCCT
GAAAAATCGAACGGAAAATCAATAAAGAAAGAAAAAGCGTCGAATGAAAA
GCAAAATTACGTTCCCAAATCAAAGAAATCCGAACGGGAAAAATCGATCG
AAGTTCCAAACAAAGAAGCTGAGCACTCTTTTTCATCGGATTCTCATTCG
GAAATATCCGACGAGTTGCTGAAAGAGAAAATTACGGCGATTCTTAGTGG
TGCCGATCTGAGCAAAATCACTCTCAATCAAGTTTGCGATGGAGTTGTCG
ATCAATTTCCCGATGTTGACCTCGTGTTGCGCCGGCCGCATATCAAATCC
CTTGTCAAACAAGTTATCGATCAATCTTCCTGAATATATTCTCGATTTAT
GTTGCCATGGTAACCACCAGTGGGCAATCAGATTTTACAGCTGTAATAAA
CATTTATGTCTTTCTTGTTTACCTTTGCATGTCTGTTTGTGTGCGGCGCA
TTGCCATGATGTCCTTGTGAATTTCCATCCAATGTTTCCCATATTTGAAT
TTTATTTCAATTATATGTGTTATCGTGCTAAAAAAAAA
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protein sequence of SMED30009265-orf-1

>SMED30009265-orf-1 ID=SMED30009265-orf-1|Name=SMED30009265-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=236bp
MENENVIESVNSDINNSREKRIRKSVSRLSDVYDKTFEMKSDRIIKPITG
NGIKFGDIKRIQDAIHRSKLNGELSKNMHLLCYRTIGKAGKRLSSIKKFN
GFDENDESEFKKRLSIVDKMKMDDLKLICDLLNVHPSGKMKKDVALGLVE
YLRCPFETGSEIFRTSALRRKIKGGKNKPTVKSVKKTKALSSNDDDDVSM
DSSVSNIEDGIKSGDEISEMIKSREKLLKNRTENQ*
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protein sequence of SMED30009265-orf-2

>SMED30009265-orf-2 ID=SMED30009265-orf-2|Name=SMED30009265-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=100bp
MELSINFPMLTSCCAGRISNPLSNKLSINLPEYILDLCCHGNHQWAIRFY
SCNKHLCLSCLPLHVCLCAAHCHDVLVNFHPMFPIFEFYFNYMCYRAKKK
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002089reproductive organ
PLANA:0002109X1 cell
PLANA:0002111X2 cell
Vocabulary: INTERPRO
TermDefinition
IPR014876DEK_C
IPR009057Homeobox-like_sf
Vocabulary: molecular function
TermDefinition
GO:0003677DNA binding