musculin
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30009207 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 7
Homology
BLAST of musculin vs. Ensembl Human
Match: MSC (musculin [Source:HGNC Symbol;Acc:HGNC:7321]) HSP 1 Score: 63.929 bits (154), Expect = 1.988e-11 Identity = 43/66 (65.15%), Postives = 54/66 (81.82%), Query Frame = 2 Query: 413 GANSTLAQRSAANSRERSRMRVLSSAFIDLKSALPWVPXXXXXXXXXXXXXAAGYIAYLKSVLVED 610 A +QR+AAN+RER+RMRVLS AF LK++LPWVP DTKLSKLDTL+LA+ YIA+L+ +L ED Sbjct: 101 AAECKQSQRNAANARERARMRVLSKAFSRLKTSLPWVPPDTKLSKLDTLRLASSYIAHLRQLLQED 166
BLAST of musculin vs. Ensembl Human
Match: TCF21 (transcription factor 21 [Source:HGNC Symbol;Acc:HGNC:11632]) HSP 1 Score: 63.1586 bits (152), Expect = 2.035e-11 Identity = 41/59 (69.49%), Postives = 50/59 (84.75%), Query Frame = 2 Query: 434 QRSAANSRERSRMRVLSSAFIDLKSALPWVPXXXXXXXXXXXXXAAGYIAYLKSVLVED 610 QR+AAN+RER+RMRVLS AF LK+ LPWVP DTKLSKLDTL+LA+ YIA+L+ +L D Sbjct: 80 QRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQILAND 138
BLAST of musculin vs. Ensembl Human
Match: TCF21 (transcription factor 21 [Source:HGNC Symbol;Acc:HGNC:11632]) HSP 1 Score: 63.1586 bits (152), Expect = 2.035e-11 Identity = 41/59 (69.49%), Postives = 50/59 (84.75%), Query Frame = 2 Query: 434 QRSAANSRERSRMRVLSSAFIDLKSALPWVPXXXXXXXXXXXXXAAGYIAYLKSVLVED 610 QR+AAN+RER+RMRVLS AF LK+ LPWVP DTKLSKLDTL+LA+ YIA+L+ +L D Sbjct: 80 QRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQILAND 138
BLAST of musculin vs. Ensembl Zebrafish
Match: tcf21 (transcription factor 21 [Source:NCBI gene;Acc:558148]) HSP 1 Score: 65.4698 bits (158), Expect = 2.028e-12 Identity = 46/80 (57.50%), Postives = 58/80 (72.50%), Query Frame = 2 Query: 434 QRSAANSRERSRMRVLSSAFIDLKSALPWVPXXXXXXXXXXXXXAAGYIAYLKSVLVEDFSGTTLPPPWSVYDIYSPYMV 673 QR+AAN+RER+RMRVLS AF LK+ LPWVP DTKLSKLDTL+LA+ YIA+L+ +L D G P ++ P+MV Sbjct: 77 QRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQILANDKYGNGYIHP---VNLTWPFMV 153
BLAST of musculin vs. Ensembl Zebrafish
Match: msc (musculin (activated B-cell factor-1) [Source:ZFIN;Acc:ZDB-GENE-090806-3]) HSP 1 Score: 63.5438 bits (153), Expect = 6.873e-12 Identity = 42/69 (60.87%), Postives = 55/69 (79.71%), Query Frame = 2 Query: 431 AQRSAANSRERSRMRVLSSAFIDLKSALPWVPXXXXXXXXXXXXXAAGYIAYLKSVLVEDFSGTTLPPP 637 +QR+AAN+RER+RMRVLS AF LK++LPWVP DTKLSKLDTL+LA+ YI++L+ +L +D L P Sbjct: 62 SQRNAANARERARMRVLSKAFSRLKTSLPWVPADTKLSKLDTLRLASSYISHLRQLLQDDTYHNNLAHP 130
BLAST of musculin vs. Ensembl Zebrafish
Match: tcf21 (transcription factor 21 [Source:NCBI gene;Acc:558148]) HSP 1 Score: 63.1586 bits (152), Expect = 1.340e-11 Identity = 41/59 (69.49%), Postives = 50/59 (84.75%), Query Frame = 2 Query: 434 QRSAANSRERSRMRVLSSAFIDLKSALPWVPXXXXXXXXXXXXXAAGYIAYLKSVLVED 610 QR+AAN+RER+RMRVLS AF LK+ LPWVP DTKLSKLDTL+LA+ YIA+L+ +L D Sbjct: 77 QRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQILAND 135
BLAST of musculin vs. Ensembl Xenopus
Match: msc (musculin [Source:NCBI gene;Acc:100124790]) HSP 1 Score: 66.6254 bits (161), Expect = 1.059e-12 Identity = 46/84 (54.76%), Postives = 61/84 (72.62%), Query Frame = 2 Query: 431 AQRSAANSRERSRMRVLSSAFIDLKSALPWVPXXXXXXXXXXXXXAAGYIAYLKSVLVEDFSGTTLPPPWSVYDIYSPYMVNSS 682 +QR AAN+RER+RMRVLS AF LK++LPWVP DTKLSKLDTL+LA+ YIA+L+ +L ED + P ++ + PY + S Sbjct: 81 SQRHAANARERARMRVLSKAFSRLKTSLPWVPPDTKLSKLDTLRLASSYIAHLRQLLQEDRYENSYVHPVNLVRMKLPYSQHQS 164
BLAST of musculin vs. Ensembl Xenopus
Match: tcf21 (transcription factor 21 [Source:NCBI gene;Acc:100126209]) HSP 1 Score: 63.929 bits (154), Expect = 1.119e-11 Identity = 48/83 (57.83%), Postives = 58/83 (69.88%), Query Frame = 2 Query: 389 GKRRGRKPGANSTLA---------QRSAANSRERSRMRVLSSAFIDLKSALPWVPXXXXXXXXXXXXXAAGYIAYLKSVLVED 610 GKRR + P S L QR+AAN+RER+RMRVLS AF LK+ LPWVP DTKLSKLDTL+LA+ YIA+L+ +L D Sbjct: 57 GKRR-KAPSKKSPLGNINQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQILAND 138
BLAST of musculin vs. Ensembl Mouse
Match: Tcf21 (transcription factor 21 [Source:MGI Symbol;Acc:MGI:1202715]) HSP 1 Score: 63.1586 bits (152), Expect = 1.210e-11 Identity = 41/59 (69.49%), Postives = 50/59 (84.75%), Query Frame = 2 Query: 434 QRSAANSRERSRMRVLSSAFIDLKSALPWVPXXXXXXXXXXXXXAAGYIAYLKSVLVED 610 QR+AAN+RER+RMRVLS AF LK+ LPWVP DTKLSKLDTL+LA+ YIA+L+ +L D Sbjct: 80 QRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQILAND 138
BLAST of musculin vs. Ensembl Mouse
Match: Tcf21 (transcription factor 21 [Source:MGI Symbol;Acc:MGI:1202715]) HSP 1 Score: 63.1586 bits (152), Expect = 1.317e-11 Identity = 41/59 (69.49%), Postives = 50/59 (84.75%), Query Frame = 2 Query: 434 QRSAANSRERSRMRVLSSAFIDLKSALPWVPXXXXXXXXXXXXXAAGYIAYLKSVLVED 610 QR+AAN+RER+RMRVLS AF LK+ LPWVP DTKLSKLDTL+LA+ YIA+L+ +L D Sbjct: 80 QRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQILAND 138
BLAST of musculin vs. Ensembl Mouse
Match: Msc (musculin [Source:MGI Symbol;Acc:MGI:1333884]) HSP 1 Score: 63.5438 bits (153), Expect = 1.596e-11 Identity = 43/65 (66.15%), Postives = 54/65 (83.08%), Query Frame = 2 Query: 416 ANSTLAQRSAANSRERSRMRVLSSAFIDLKSALPWVPXXXXXXXXXXXXXAAGYIAYLKSVLVED 610 A +QR+AAN+RER+RMRVLS AF LK++LPWVP DTKLSKLDTL+LA+ YIA+L+ +L ED Sbjct: 97 AECKQSQRNAANARERARMRVLSKAFSRLKTSLPWVPPDTKLSKLDTLRLASSYIAHLRQLLQED 161
BLAST of musculin vs. UniProt/SwissProt
Match: sp|A8E5T6|TCF21_XENTR (Transcription factor 21 OS=Xenopus tropicalis OX=8364 GN=tcf21 PE=2 SV=1) HSP 1 Score: 63.929 bits (154), Expect = 5.927e-11 Identity = 48/83 (57.83%), Postives = 58/83 (69.88%), Query Frame = 2 Query: 389 GKRRGRKPGANSTLA---------QRSAANSRERSRMRVLSSAFIDLKSALPWVPXXXXXXXXXXXXXAAGYIAYLKSVLVED 610 GKRR + P S L QR+AAN+RER+RMRVLS AF LK+ LPWVP DTKLSKLDTL+LA+ YIA+L+ +L D Sbjct: 57 GKRR-KAPSKKSPLGNINQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQILAND 138
BLAST of musculin vs. UniProt/SwissProt
Match: sp|Q6GNB7|TCF21_XENLA (Transcription factor 21 OS=Xenopus laevis OX=8355 GN=tcf21 PE=2 SV=1) HSP 1 Score: 63.5438 bits (153), Expect = 7.725e-11 Identity = 46/80 (57.50%), Postives = 59/80 (73.75%), Query Frame = 2 Query: 371 PLLTVNGKRRGRKPGANSTLAQRSAANSRERSRMRVLSSAFIDLKSALPWVPXXXXXXXXXXXXXAAGYIAYLKSVLVED 610 PL T+N + G++ QR+AAN+RER+RMRVLS AF LK+ LPWVP DTKLSKLDTL+LA+ YIA+L+ +L D Sbjct: 68 PLGTIN--QEGKQ-------VQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQILAND 138
BLAST of musculin vs. UniProt/SwissProt
Match: sp|O35437|TCF21_MOUSE (Transcription factor 21 OS=Mus musculus OX=10090 GN=Tcf21 PE=2 SV=1) HSP 1 Score: 63.1586 bits (152), Expect = 9.215e-11 Identity = 41/59 (69.49%), Postives = 50/59 (84.75%), Query Frame = 2 Query: 434 QRSAANSRERSRMRVLSSAFIDLKSALPWVPXXXXXXXXXXXXXAAGYIAYLKSVLVED 610 QR+AAN+RER+RMRVLS AF LK+ LPWVP DTKLSKLDTL+LA+ YIA+L+ +L D Sbjct: 80 QRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQILAND 138
BLAST of musculin vs. UniProt/SwissProt
Match: sp|O60682|MUSC_HUMAN (Musculin OS=Homo sapiens OX=9606 GN=MSC PE=1 SV=2) HSP 1 Score: 63.929 bits (154), Expect = 9.549e-11 Identity = 43/66 (65.15%), Postives = 54/66 (81.82%), Query Frame = 2 Query: 413 GANSTLAQRSAANSRERSRMRVLSSAFIDLKSALPWVPXXXXXXXXXXXXXAAGYIAYLKSVLVED 610 A +QR+AAN+RER+RMRVLS AF LK++LPWVP DTKLSKLDTL+LA+ YIA+L+ +L ED Sbjct: 101 AAECKQSQRNAANARERARMRVLSKAFSRLKTSLPWVPPDTKLSKLDTLRLASSYIAHLRQLLQED 166
BLAST of musculin vs. UniProt/SwissProt
Match: sp|Q32PV5|TCF21_DANRE (Transcription factor 21 OS=Danio rerio OX=7955 GN=tcf21 PE=2 SV=1) HSP 1 Score: 63.1586 bits (152), Expect = 9.726e-11 Identity = 41/59 (69.49%), Postives = 50/59 (84.75%), Query Frame = 2 Query: 434 QRSAANSRERSRMRVLSSAFIDLKSALPWVPXXXXXXXXXXXXXAAGYIAYLKSVLVED 610 QR+AAN+RER+RMRVLS AF LK+ LPWVP DTKLSKLDTL+LA+ YIA+L+ +L D Sbjct: 77 QRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQILAND 135
BLAST of musculin vs. TrEMBL
Match: U5YQC3 (Musculin (Fragment) OS=Schmidtea mediterranea OX=79327 PE=2 SV=1) HSP 1 Score: 261.151 bits (666), Expect = 5.921e-85 Identity = 140/141 (99.29%), Postives = 140/141 (99.29%), Query Frame = 2 Query: 392 KRRGRKPGANSTLAQRSAANSRERSRMRVLSSAFIDLKSALPWVPXXXXXXXXXXXXXAAGYIAYLKSVLVEDFSGTTLPPPWSVYDIYSPYMVNSSNKCPIPRTWSPTQHQNCQSNMKINCPTTNCSVPSNTLLQELIDI 814 KRRGRKPGANSTLAQRSAANSRERSRMRVLSSAFIDLKSALPWVPKDTKLSKLDTLKLAAGYIAYLKSVLVEDFSGTTLPPPWSVYDIYSPYMVNSSNKCPIPRTWSPTQHQNCQSNMKINCPTTNCSVPSNT LQELIDI Sbjct: 1 KRRGRKPGANSTLAQRSAANSRERSRMRVLSSAFIDLKSALPWVPKDTKLSKLDTLKLAAGYIAYLKSVLVEDFSGTTLPPPWSVYDIYSPYMVNSSNKCPIPRTWSPTQHQNCQSNMKINCPTTNCSVPSNTFLQELIDI 141
BLAST of musculin vs. TrEMBL
Match: A0A023ZT92 (Musculin (Fragment) OS=Schmidtea mediterranea OX=79327 PE=2 SV=1) HSP 1 Score: 212.616 bits (540), Expect = 2.715e-66 Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 2 Query: 470 MRVLSSAFIDLKSALPWVPXXXXXXXXXXXXXAAGYIAYLKSVLVEDFSGTTLPPPWSVYDIYSPYMVNSSNKCPIPRTWSPTQHQNCQSNMKINCPTTNCSVPSNTLLQELIDID 817 MRVLSSAFIDLKSALPWVPKDTKLSKLDTLKLAAGYIAYLKSVLVEDFSGTTLPPPWSVYDIYSPYMVNSSNKCPIPRTWSPTQHQNCQSNMKINCPTTNCSVPSNTLLQELIDID Sbjct: 1 MRVLSSAFIDLKSALPWVPKDTKLSKLDTLKLAAGYIAYLKSVLVEDFSGTTLPPPWSVYDIYSPYMVNSSNKCPIPRTWSPTQHQNCQSNMKINCPTTNCSVPSNTLLQELIDID 116
BLAST of musculin vs. TrEMBL
Match: G4VEB5 (Putative musculin OS=Schistosoma mansoni OX=6183 GN=Smp_022610 PE=4 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 2.629e-26 Identity = 75/127 (59.06%), Postives = 89/127 (70.08%), Query Frame = 2 Query: 374 LLTVNGKRRGRKPGANSTLAQRSAANSRERSRMRVLSSAFIDLKSALPWVPXXXXXXXXXXXXXAAGYIAYLKSVLVEDFSGTTLPPPWSVYDIYSPYMVNSSNKCPIPRTWSPTQHQNCQSNMKIN 754 L+T NGKRRGRKPG NST+AQRSAAN+RERSRMRVLS AF++LK ALPWVPKDTKLSKLDTLKLAAGYIAYL+ +L S T + P V + + I RT + + QSN ++N Sbjct: 15 LITQNGKRRGRKPGLNSTVAQRSAANARERSRMRVLSGAFVELKGALPWVPKDTKLSKLDTLKLAAGYIAYLRRILDTSESHTIIARP----------SVEITEESRIIRTATSLKLSTSQSNFELN 131
BLAST of musculin vs. TrEMBL
Match: A0A183KKL9 (BHLH domain-containing protein OS=Schistosoma curassoni OX=6186 GN=SCUD_LOCUS15580 PE=4 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 3.615e-26 Identity = 76/145 (52.41%), Postives = 95/145 (65.52%), Query Frame = 2 Query: 374 LLTVNGKRRGRKPGANSTLAQRSAANSRERSRMRVLSSAFIDLKSALPWVPXXXXXXXXXXXXXAAGYIAYLKSVLVEDFSGTTLPPPWSVYDIYSPYMVNSSNKCPIPRTWSPTQHQNCQSNMKINCPTTNCSVPSNTLLQELI 808 L+T NGKRRGRKPG NST+AQRSAAN+RERSRMRVLS AF++LK ALPWVPKDTKLSKLDTLKLAAGYIAYL+ +L + T + P V + + + RT + + QSN ++N + ++P L L Sbjct: 15 LITPNGKRRGRKPGLNSTVAQRSAANARERSRMRVLSGAFVELKGALPWVPKDTKLSKLDTLKLAAGYIAYLRRILDTSETHTIMARP----------SVEITEESRLVRTATSLKLSTSQSNFELNSNLHSNTLPDTIKLFNLF 149
BLAST of musculin vs. TrEMBL
Match: A0A2H1C9D5 (Helix-loop-helix DNA-binding domain protein OS=Fasciola hepatica OX=6192 GN=D915_08809 PE=4 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 8.320e-25 Identity = 65/84 (77.38%), Postives = 73/84 (86.90%), Query Frame = 2 Query: 350 TIVECPPPLLTVNGKRRGRKPGANSTLAQRSAANSRERSRMRVLSSAFIDLKSALPWVPXXXXXXXXXXXXXAAGYIAYLKSVL 601 T+ P L+T GKRRGRKPG NST+AQRSAAN+RERSRMRVLS AF++LK ALPWVPKDTKLSKLDTLKLAAGYIAYL+ +L Sbjct: 4 TLTAGPGLLVTSGGKRRGRKPGLNSTVAQRSAANARERSRMRVLSGAFVELKGALPWVPKDTKLSKLDTLKLAAGYIAYLRRIL 87
BLAST of musculin vs. Ensembl Cavefish
Match: msc (musculin [Source:NCBI gene;Acc:103036829]) HSP 1 Score: 66.2402 bits (160), Expect = 4.857e-13 Identity = 44/67 (65.67%), Postives = 53/67 (79.10%), Query Frame = 2 Query: 434 QRSAANSRERSRMRVLSSAFIDLKSALPWVPXXXXXXXXXXXXXAAGYIAYLKSVLVEDFSGTTLPP 634 QRSAAN+RER+RMRVL AF L++ LPWVP DTKLSKLDTL+LAA YI +L+ +L ED +TL P Sbjct: 56 QRSAANARERARMRVLGRAFTRLRTTLPWVPPDTKLSKLDTLRLAASYITHLRQLLQEDTHTSTLHP 122
BLAST of musculin vs. Ensembl Cavefish
Match: tcf21 (transcription factor 21 [Source:NCBI gene;Acc:103031663]) HSP 1 Score: 65.0846 bits (157), Expect = 2.384e-12 Identity = 42/59 (71.19%), Postives = 50/59 (84.75%), Query Frame = 2 Query: 434 QRSAANSRERSRMRVLSSAFIDLKSALPWVPXXXXXXXXXXXXXAAGYIAYLKSVLVED 610 QR+AAN+RER+RMRVLS AF LK+ LPWVP DTKLSKLDTL+LAA YIA+L+ +L D Sbjct: 83 QRNAANARERARMRVLSKAFSRLKTTLPWVPADTKLSKLDTLRLAASYIAHLRQILASD 141
BLAST of musculin vs. Ensembl Cavefish
Match: tcf15 (transcription factor 15 [Source:NCBI gene;Acc:103040145]) HSP 1 Score: 47.7506 bits (112), Expect = 2.270e-6 Identity = 35/86 (40.70%), Postives = 55/86 (63.95%), Query Frame = 2 Query: 392 KRRGRKPGANSTLAQRSAANSRERSRMRVLSSAFIDLKSALPWVPXXXXXXXXXXXXXAAGYIAYLKSVLVEDFSGTTLPPPWSVY 649 KRR G + QR+AAN+RER R + +++AF L++ +P P D KLSK++TL+LA+ YI++L +VL+ +G P S + Sbjct: 48 KRRRNTTGGVLIVKQRNAANARERDRTQSVNTAFTALRTLIPTEPVDRKLSKIETLRLASSYISHLANVLLTGDAGEHAQPCLSAH 133
BLAST of musculin vs. Ensembl Sea Lamprey
Match: tcf21 (transcription factor 21 [Source:NCBI gene;Acc:558148]) HSP 1 Score: 61.6178 bits (148), Expect = 1.004e-11 Identity = 39/60 (65.00%), Postives = 50/60 (83.33%), Query Frame = 2 Query: 431 AQRSAANSRERSRMRVLSSAFIDLKSALPWVPXXXXXXXXXXXXXAAGYIAYLKSVLVED 610 QR+AAN+RER+RMRVLS AF LK+ LPWVP DTKLSKLDTL+LA+ YI +L+ +L ++ Sbjct: 96 GQRNAANARERARMRVLSKAFSRLKTTLPWVPADTKLSKLDTLRLASSYIGHLRQILADE 155
BLAST of musculin vs. Ensembl Sea Lamprey
Match: si:dkey-34f9.3 (si:dkey-34f9.3 [Source:ZFIN;Acc:ZDB-GENE-081104-410]) HSP 1 Score: 44.2838 bits (103), Expect = 3.992e-6 Identity = 30/59 (50.85%), Postives = 43/59 (72.88%), Query Frame = 2 Query: 434 QRSAANSRERSRMRVLSSAFIDLKSALPWVPXXXXXXXXXXXXXAAGYIAYLKSVLVED 610 QR+AAN RER RM ++SAF +L+ +P P + +LSK+DTL+LA YIA L+ +L+ D Sbjct: 34 QRTAANVRERRRMLSINSAFEELRCHVPTFPYEKRLSKIDTLRLAIAYIALLRDILLSD 92
BLAST of musculin vs. Ensembl Medaka
Match: tcf21 (transcription factor 21 [Source:NCBI gene;Acc:101172550]) HSP 1 Score: 63.5438 bits (153), Expect = 8.213e-12 Identity = 48/85 (56.47%), Postives = 60/85 (70.59%), Query Frame = 2 Query: 389 GKRRGRKPGANSTLA-----------QRSAANSRERSRMRVLSSAFIDLKSALPWVPXXXXXXXXXXXXXAAGYIAYLKSVLVED 610 GKRR K G+ + A QR+AAN+RER+RMRVLS AF LK++LPWVP DTKLSKLDTL+LA+ YIA+L+ +L D Sbjct: 48 GKRR--KTGSRKSAAKGGAQQEGKQVQRNAANARERARMRVLSKAFSRLKTSLPWVPPDTKLSKLDTLRLASSYIAHLRQILAND 130
BLAST of musculin vs. Ensembl Medaka
Match: msc (musculin [Source:NCBI gene;Acc:101174781]) HSP 1 Score: 59.6918 bits (143), Expect = 1.705e-10 Identity = 42/80 (52.50%), Postives = 60/80 (75.00%), Query Frame = 2 Query: 434 QRSAANSRERSRMRVLSSAFIDLKSALPWVPXXXXXXXXXXXXXAAGYIAYLKSVLVEDFSGTTLPPPWSVYDIYSPYMV 673 QR+AAN+RER+RMRVLS AF LK++LPWVP DTKLSKLDTL+LA+ YI++L+ +L + ++ P ++ P+M+ Sbjct: 71 QRNAANARERARMRVLSKAFSRLKTSLPWVPADTKLSKLDTLRLASSYISHLRQLLQDGRFESSFAHP---VNLTWPFMM 147
BLAST of musculin vs. Planmine SMEST
Match: SMESG000018258.1 (SMESG000018258.1) HSP 1 Score: 370.163 bits (949), Expect = 8.394e-131 Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 2 Query: 317 MSTVVVKKASLTIVECPPPLLTVNGKRRGRKPGANSTLAQRSAANSRERSRMRVLSSAFIDLKSALPWVPXXXXXXXXXXXXXAAGYIAYLKSVLVEDFSGTTLPPPWSVYDIYSPYMVNSSNKCPIPRTWSPTQHQNCQSNMKINCPTTNCSVPSNTLLQELIDIDSSTQLDSANNQTHHFFYRNNKTNYFL 895 MSTVVVKKASLTIVECPPPLLTVNGKRRGRKPGANSTLAQRSAANSRERSRMRVLSSAFIDLKSALPWVPKDTKLSKLDTLKLAAGYIAYLKSVLVEDFSGTTLPPPWSVYDIYSPYMVNSSNKCPIPRTWSPTQHQNCQSNMKINCPTTNCSVPSNTLLQELIDIDSSTQLDSANNQTHHFFYRNNKTNYFL Sbjct: 1 MSTVVVKKASLTIVECPPPLLTVNGKRRGRKPGANSTLAQRSAANSRERSRMRVLSSAFIDLKSALPWVPKDTKLSKLDTLKLAAGYIAYLKSVLVEDFSGTTLPPPWSVYDIYSPYMVNSSNKCPIPRTWSPTQHQNCQSNMKINCPTTNCSVPSNTLLQELIDIDSSTQLDSANNQTHHFFYRNNKTNYFL 193 The following BLAST results are available for this feature:
BLAST of musculin vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 3
BLAST of musculin vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of musculin vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of musculin vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 3
BLAST of musculin vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 2
BLAST of musculin vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 3
BLAST of musculin vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of musculin vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of musculin vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 3
BLAST of musculin vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 2
BLAST of musculin vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of musculin vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of musculin vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 2
BLAST of musculin vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 1
Analyses
This transcript is derived from or has results from the following analyses Cross References
External references for this transcript
Sequences
The following sequences are available for this feature:
transcript sequence >SMED30009207 ID=SMED30009207|Name=musculin|organism=Schmidtea mediterranea sexual|type=transcript|length=925bpback to top protein sequence of SMED30009207-orf-1 >SMED30009207-orf-1 ID=SMED30009207-orf-1|Name=SMED30009207-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=194bp MSTVVVKKASLTIVECPPPLLTVNGKRRGRKPGANSTLAQRSAANSRERSback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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