Polypyrimidine tract-binding protein 1

Overview


Name	Polypyrimidine tract-binding protein 1
Smed ID	SMED30009115
Length (bp)	2583

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of Polypyrimidine tract-binding protein 1 (SMED30009115) t-SNE clustered cells

Violin plots show distribution of expression levels for Polypyrimidine tract-binding protein 1 (SMED30009115) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Polypyrimidine tract-binding protein 1 (SMED30009115) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Polypyrimidine tract-binding protein 1 (SMED30009115) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30009115

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 9

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
head region	SMED30009115	h1SMcG0004473	SmedASXL_016942	SmedAsxl_ww_GCZZ01	PMID:27034770 Currie et al., 2016
pharynx	SMED30009115	h1SMcG0004473	dd_Smed_v4_14748_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
nervous system	SMED30009115	h1SMcG0004473	dd_Smed_v4_14748_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
epidermis	SMED30009115	h1SMcG0004473	dd_Smed_v4_14748_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cephalic ganglia	SMED30009115	h1SMcG0004473	dd_Smed_v4_14748_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
muscle cell	SMED30009115	h1SMcG0004473	dd_Smed_v4_14748_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
non-ciliated neuron	SMED30009115	h1SMcG0004473	dd_Smed_v4_14748_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
head region	SMED30009115	h1SMcG0004473	dd_Smed_v6_14748_0_1	dd_Smed_v6	PMID:28171748 Stückemann et al., 2017
dorsal ventral margin of the whole animal	SMED30009115	h1SMcG0004473	dd_Smed_v4_14748_0_1	dd_Smed_v4	PMID:28292427 Wurtzel et al., 2017

Note: Hover over icons to view figure legend

Homology

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BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Human
Match: PTBP2 (polypyrimidine tract binding protein 2 [Source:HGNC Symbol;Acc:HGNC:17662])

HSP 1 Score: 315.849 bits (808), Expect = 2.837e-97
Identity = 205/569 (36.03%), Postives = 295/569 (51.85%), Query Frame = 1

Query:  697 GVKRSIQNFNSNSLLGSSYS------IDVDSNESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLE----LKLKNSNIDASVDAANKMNEKHRSIVDEWSSENKSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPLQEDEQFSLHFLDWQAKSVSTVPPQQYPSLSTVPLLQTQVQKPLYSDFLPNNLFYTVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPIVKPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEVKHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
            GVKR      S S+L S  S      +  + N+SKK K E   +  PS+VLHIR +     E+++  L +PFGK+ +++  K  NQA LEL     A  M +YY+   P    + + +QYS H  L+    L  +   +  +V A    N          S+   +   +LR++I+N+  Y +   V+ ++F +FG VL+II FTKN Q Q L++  + ++A  + L L+GQ+++N CC L+I+FSK  + L ++  NDK RDYT   L                          PS    P L   +      +     L    +P         SP+AIP +   +  A       P V      +A  ++++LVSNLN E V   S+FTLFGVYGDV +V I      +AL+ M   +Q++ A  HLN   ++GKII   L   + V   +    L+     K F N+PLHRFKKP SKN  NI+PPS+ LHLSNIP S  EEDL TLF + G    + + FQ+D KMAL +M ++E+AI ALI LHN+ L ++ HLRVSFSK+ I
Sbjct:   11 GVKRGSDELLSGSVLSSPNSNMSSMVVTANGNDSKKFKGEDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPAQSPVLRIIIDNMY-YPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYNACCTLRIDFSKLVN-LNVKYNNDKSRDYTRPDL--------------------------PSGDGQPALDPAIAAAFAKETSLLGLPVAAVPGAL------SPLAIPNAAAAAAAAAAGRVGMPGV------SAGGNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTV--QLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQRDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSKSTI 537

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BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Human
Match: PTBP2 (polypyrimidine tract binding protein 2 [Source:HGNC Symbol;Acc:HGNC:17662])

HSP 1 Score: 313.153 bits (801), Expect = 2.544e-96
Identity = 205/569 (36.03%), Postives = 294/569 (51.67%), Query Frame = 1

Query:  697 GVKRSIQNFNSNSLLGSSYS------IDVDSNESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLE----LKLKNSNIDASVDAANKMNEKHRSIVDEWSSENKSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPLQEDEQFSLHFLDWQAKSVSTVPPQQYPSLSTVPLLQTQVQKPLYSDFLPNNLFYTVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPIVKPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEVKHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
            GVKR      S S+L S  S      +  + N+SKK K E   +  PS+VLHIR +     E+++  L +PFGK+ +++  K  NQA LEL     A  M +YY+   P    + + +QYS H  L+    L  +   +  +V A    N          S+   +   +LR++I+N+  Y +   V+ ++F +FG VL+II FTKN Q Q L++  + ++A  + L L+GQ+++N CC L+I+FSK  + L ++  NDK RDYT   L                          PS    P L      P  +           +P         SP+AIP +   +  A       P V      +A  ++++LVSNLN E V   S+FTLFGVYGDV +V I      +AL+ M   +Q++ A  HLN   ++GKII   L   + V   +    L+     K F N+PLHRFKKP SKN  NI+PPS+ LHLSNIP S  EEDL TLF + G    + + FQ+D KMAL +M ++E+AI ALI LHN+ L ++ HLRVSFSK+ I
Sbjct:   11 GVKRGSDELLSGSVLSSPNSNMSSMVVTANGNDSKKFKGEDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPAQSPVLRIIIDNMY-YPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYNACCTLRIDFSKLVN-LNVKYNNDKSRDYTRPDL--------------------------PSGDGQPALD-----PAIAAAFAKETSLLAVPGAL------SPLAIPNAAAAAAAAAAGRVGMPGV------SAGGNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTV--QLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQRDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSKSTI 532

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BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Human
Match: PTBP2 (polypyrimidine tract binding protein 2 [Source:HGNC Symbol;Acc:HGNC:17662])

HSP 1 Score: 310.457 bits (794), Expect = 3.025e-95
Identity = 205/569 (36.03%), Postives = 294/569 (51.67%), Query Frame = 1

Query:  697 GVKRSIQNFNSNSLLGSSYS------IDVDSNESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLE----LKLKNSNIDASVDAANKMNEKHRSIVDEWSSENKSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPLQEDEQFSLHFLDWQAKSVSTVPPQQYPSLSTVPLLQTQVQKPLYSDFLPNNLFYTVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPIVKPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEVKHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
            GVKR      S S+L S  S      +  + N+SKK K E   +  PS+VLHIR +     E+++  L +PFGK+ +++  K  NQA LEL     A  M +YY+   P    + + +QYS H  L+    L  +   +  +V A    N          S+   +   +LR++I+N+  Y +   V+ ++F +FG VL+II FTKN Q Q L++  + ++A  + L L+GQ+++N CC L+I+FSK  + L ++  NDK RDYT   L                          PS    P L   +      +     L    +P         SP+AIP +   +  A       P V      +A  ++++LVSNLN E V   S+FTLFGVYGDV +V I      +AL+ M   +Q++ A  HLN   ++GKII   L   + V   +    L+     K F N+PLHRFKKP SKN  NI+PPS+ LHLSNIP S  EEDL TLF + G    + + FQ D KMAL +M ++E+AI ALI LHN+ L ++ HLRVSFSK+ I
Sbjct:   11 GVKRGSDELLSGSVLSSPNSNMSSMVVTANGNDSKKFKGEDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPAQSPVLRIIIDNMY-YPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYNACCTLRIDFSKLVN-LNVKYNNDKSRDYTRPDL--------------------------PSGDGQPALDPAIAAAFAKETSLLGLPVAAVPGAL------SPLAIPNAAAAAAAAAAGRVGMPGV------SAGGNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTV--QLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQ-DHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSKSTI 536

[Close]

BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Human
Match: PTBP2 (polypyrimidine tract binding protein 2 [Source:HGNC Symbol;Acc:HGNC:17662])

HSP 1 Score: 307.76 bits (787), Expect = 2.880e-94
Identity = 205/569 (36.03%), Postives = 293/569 (51.49%), Query Frame = 1

Query:  697 GVKRSIQNFNSNSLLGSSYS------IDVDSNESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLE----LKLKNSNIDASVDAANKMNEKHRSIVDEWSSENKSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPLQEDEQFSLHFLDWQAKSVSTVPPQQYPSLSTVPLLQTQVQKPLYSDFLPNNLFYTVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPIVKPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEVKHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
            GVKR      S S+L S  S      +  + N+SKK K E   +  PS+VLHIR +     E+++  L +PFGK+ +++  K  NQA LEL     A  M +YY+   P    + + +QYS H  L+    L  +   +  +V A    N          S+   +   +LR++I+N+  Y +   V+ ++F +FG VL+II FTKN Q Q L++  + ++A  + L L+GQ+++N CC L+I+FSK  + L ++  NDK RDYT   L                          PS    P L      P  +           +P         SP+AIP +   +  A       P V      +A  ++++LVSNLN E V   S+FTLFGVYGDV +V I      +AL+ M   +Q++ A  HLN   ++GKII   L   + V   +    L+     K F N+PLHRFKKP SKN  NI+PPS+ LHLSNIP S  EEDL TLF + G    + + FQ D KMAL +M ++E+AI ALI LHN+ L ++ HLRVSFSK+ I
Sbjct:   11 GVKRGSDELLSGSVLSSPNSNMSSMVVTANGNDSKKFKGEDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPAQSPVLRIIIDNMY-YPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYNACCTLRIDFSKLVN-LNVKYNNDKSRDYTRPDL--------------------------PSGDGQPALD-----PAIAAAFAKETSLLAVPGAL------SPLAIPNAAAAAAAAAAGRVGMPGV------SAGGNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTV--QLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQ-DHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSKSTI 531

[Close]

BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Human
Match: PTBP3 (polypyrimidine tract binding protein 3 [Source:HGNC Symbol;Acc:HGNC:10253])

HSP 1 Score: 286.189 bits (731), Expect = 6.302e-86
Identity = 199/577 (34.49%), Postives = 299/577 (51.82%), Query Frame = 1

Query:  697 GVKRSIQNFNSNSLLGSSYSID------VDSNESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKN----SNIDASVDAANKMNEKHRSIVDEWSSENK---SDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPLQEDEQFSLHFLDWQAKSVSTVPPQQY----PSLSTVPLLQTQVQKPLYSDFLPNNLFYTVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPIVKPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEV-KHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
            G+KR      S+ ++   ++++       + N+SKK K +      PS+VLH+R I     E+++  L +PFGK+ +++  K  +QA LE+     A  M +YYT   P    + + +QYS H   ELK  N    +   A++ A + +     ++    S+E         +LR++IENL  Y +   V+ ++F +FG VL+II FTKN Q Q L++  + ++AH + + L+GQ+++N CC L+I+FSK T SL ++  NDK RD+T        +  L   D Q    S  PP       P + + P        P         L    +P          P+ I  S +    AI           P ++    +S++LV+NLN + +    +F LFGVYGDV +V I       ALV M   +QA+ A  HL+   L+GK++   L   + V       E   D  + K F+N+PLHRFKKP SKN  NI+PPS+ LHLSNIP S   +DL  LF + G    + + FQKD+KMAL ++ S+E+AI ALI LHN  L ++ HLRVSFSK+ I
Sbjct:   12 GLKRGSDELLSSGIINGPFTMNSSTPSTANGNDSKKFKRD-RPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYTPITPHLRSQPVYIQYSNH--RELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVLPGQSPVLRIIIENLF-YPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLT-SLNVKYNNDKSRDFT--------RLDLPTGDGQP---SLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGAL------GPLTITSSAVTGRMAI-----------PGASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLRATLSKHQAVQ---LPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSKSTI 552

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BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Celegans
Match: ptb-1 (PTB (HnRNP) homolog; Putative RNA-binding protein PTB-1a [Source:UniProtKB/TrEMBL;Acc:Q18999])

HSP 1 Score: 159.073 bits (401), Expect = 1.341e-41
Identity = 87/203 (42.86%), Postives = 122/203 (60.10%), Query Frame = 1

Query: 1780 SSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIE-----VKHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
            + +ILVSNL+  KV TD++FTLFGVYGDV +V I       AL+      QA+ A  HL+ V    ++I        +      N ++  + +      + + ++ LHRFKKP SKN+ NIYPP + LHLSNIP S  EE L  +F + GF   + + F KD KMAL ++  +E AI ALI++HN KL +++HLRVSFSK+ I
Sbjct:  258 TPVILVSNLHEMKVTTDALFTLFGVYGDVMRVKILYNKKDNALIQYSEPQQAQLALTHLDKVKWHDRLI-------RVAPSKHTNVQMPKEGQPDAGLTRDYAHSTLHRFKKPGSKNYLNIYPPCATLHLSNIPTSVSEEKLKEMFAEAGFAVKAFKFFPKDHKMALCQLEDIETAIDALIAMHNHKLAENAHLRVSFSKSGI 453

HSP 2 Score: 82.8037 bits (203), Expect = 3.045e-16
Identity = 47/133 (35.34%), Postives = 76/133 (57.14%), Query Frame = 1

Query: 1078 NIDASVDAANKMNEKHRSIVDEWSSE-----NKSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYT 1461
            N D  V AA+      +S+ +   S       +    +LR +IEN+  + ++  V+ ++F R+GKVLRII F KN   Q LV++  + SA ++   L  Q+++N CC L+I++SK   +L ++  NDK RDYT
Sbjct:   32 NNDVVVGAASTGRAAGKSVANGSVSNFEVGTQQQPNSVLRTIIENMM-FPVSLDVLYQLFTRYGKVLRIITFNKNNTFQALVQMSEANSAQLAKQGLENQNVYNGCCTLRIDYSK-LSTLNVKYNNDKSRDYT 162

[Close]

Query: 1780 SSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIE-----VKHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
            + +ILVSNL+  KV TD++FTLFGVYGDV +V I       AL+      QA+ A  HL+ V    ++I        +      N ++  + +      + + ++ LHRFKKP SKN+ NIYPP + LHLSNIP S  EE L  +F + GF   + + F KD KMAL ++  +E AI ALI++HN KL +++HLRVSFSK+ I
Sbjct:  258 TPVILVSNLHEMKVTTDALFTLFGVYGDVMRVKILYNKKDNALIQYSEPQQAQLALTHLDKVKWHDRLI-------RVAPSKHTNVQMPKEGQPDAGLTRDYAHSTLHRFKKPGSKNYLNIYPPCATLHLSNIPTSVSEEKLKEMFAEAGFAVKAFKFFPKDHKMALCQLEDIETAIDALIAMHNHKLAENAHLRVSFSKSGI 453

HSP 2 Score: 82.8037 bits (203), Expect = 3.045e-16
Identity = 47/133 (35.34%), Postives = 76/133 (57.14%), Query Frame = 1

Query: 1078 NIDASVDAANKMNEKHRSIVDEWSSE-----NKSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYT 1461
            N D  V AA+      +S+ +   S       +    +LR +IEN+  + ++  V+ ++F R+GKVLRII F KN   Q LV++  + SA ++   L  Q+++N CC L+I++SK   +L ++  NDK RDYT
Sbjct:   32 NNDVVVGAASTGRAAGKSVANGSVSNFEVGTQQQPNSVLRTIIENMM-FPVSLDVLYQLFTRYGKVLRIITFNKNNTFQALVQMSEANSAQLAKQGLENQNVYNGCCTLRIDYSK-LSTLNVKYNNDKSRDYT 162

[Close]

BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Celegans
Match: ptb-1 (PTB (HnRNP) homolog; Putative RNA-binding protein PTB-1a [Source:UniProtKB/TrEMBL;Acc:Q18999])

HSP 1 Score: 159.073 bits (401), Expect = 1.349e-40
Identity = 87/203 (42.86%), Postives = 122/203 (60.10%), Query Frame = 1

Query: 1780 SSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIE-----VKHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
            + +ILVSNL+  KV TD++FTLFGVYGDV +V I       AL+      QA+ A  HL+ V    ++I        +      N ++  + +      + + ++ LHRFKKP SKN+ NIYPP + LHLSNIP S  EE L  +F + GF   + + F KD KMAL ++  +E AI ALI++HN KL +++HLRVSFSK+ I
Sbjct:  420 TPVILVSNLHEMKVTTDALFTLFGVYGDVMRVKILYNKKDNALIQYSEPQQAQLALTHLDKVKWHDRLI-------RVAPSKHTNVQMPKEGQPDAGLTRDYAHSTLHRFKKPGSKNYLNIYPPCATLHLSNIPTSVSEEKLKEMFAEAGFAVKAFKFFPKDHKMALCQLEDIETAIDALIAMHNHKLAENAHLRVSFSKSGI 615

HSP 2 Score: 110.153 bits (274), Expect = 1.065e-24
Identity = 71/214 (33.18%), Postives = 114/214 (53.27%), Query Frame = 1

Query:  820 SKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKNSNIDASVDAANKMNEKHRSIVDEWSSENKSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYT 1461
            SKV+H+RNI     + +L  L + +G + + +  K  +QA +E E+ + A       T  P    GR +  QYS H  L+   KN  I  +   AN       S+ +      +    +LR +IEN+  + ++  V+ ++F R+GKVLRII F KN   Q LV++  + SA ++   L  Q+++N CC L+I++SK   +L ++  NDK RDYT
Sbjct:  120 SKVVHVRNIPPDLVDVELMQLCIQYGPVSNYMMLKGKSQAFVEYEEEASAAAFVSGMTAVPIQIRGRTLFAQYSTHRELKFD-KNKAISDTESVANG------SVSNFEVGTQQQPNSVLRTIIENMM-FPVSLDVLYQLFTRYGKVLRIITFNKNNTFQALVQMSEANSAQLAKQGLENQNVYNGCCTLRIDYSK-LSTLNVKYNNDKSRDYT 324

[Close]

BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Celegans
Match: hrpl-1 (Heterogeneous nuclear RibonucleoProtein (HnRNP) L homolog [Source:UniProtKB/TrEMBL;Acc:Q95QR5])

HSP 1 Score: 87.4261 bits (215), Expect = 2.598e-18
Identity = 89/386 (23.06%), Postives = 153/386 (39.64%), Query Frame = 1

Query:  742 GSSYSIDVDSNESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKNSNIDASVDAANKMNEKHRSIVDEWSSENKSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTV----SPLQEDE-QFSLHFLDWQAKSVSTVPPQQYPSLSTVPLLQTQVQKPLYSDFLPNNLFYTVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPIVKPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCIS 1884
            G  +  D      +    +P TN  PS V+H+RN+  +  E+DL      FG +        +  AL+E E    A    ++ T       G+  +  YS    +E                               E+ +  ++L V + N + Y I+  VI ++    GKVLR+ +  K    Q LVE ++   A  +   +NG D+++ CC LK+EF+K  D +++QRQ+   RD+T+     P ++D   +  H  D+QA       P  Y   S         +   +SD+   +              +  P   P S    D      Y++     P+        ++++  L + K+N D +F +   YG+V +V  S
Sbjct:    6 GYHHGFDGPKRYRRDDNADP-TNPNPSIVVHVRNLHQKVTEADLLEALSNFGPVAYATCIPHSRMALVEFEDIEGAKACVNFATSNQINVGGQGALFNYSTSQCIE---------------------------RMGFESATPNKVLVVTVLNAQ-YPIDADVIYQISNAQGKVLRVAVMHKPTVVQALVEFESMEVAKAAKHAMNGADIYSGCCTLKVEFAK-PDRVRVQRQDKDQRDFTLPDNRRPYEDDRNHYDRH--DYQA-------PSSYGYSS---------RGGGHSDYYGGD--------------RGGPPHPPPSRYRDD------YEDRGYAQPAGGGP--GCVMMIYGLEHGKINCDMLFNILCQYGNVLRVSSS 321

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BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Celegans
Match: hrpl-1 (Heterogeneous nuclear RibonucleoProtein (HnRNP) L homolog [Source:UniProtKB/TrEMBL;Acc:Q95QR5])

HSP 1 Score: 88.9669 bits (219), Expect = 5.494e-18
Identity = 90/415 (21.69%), Postives = 161/415 (38.80%), Query Frame = 1

Query:  742 GSSYSIDVDSNESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKNSNIDASVDAANKMNEKHRSIVDEWSSENKSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPLQEDEQFSLHFLDWQAKSVSTVPPQQYPSLSTVPLLQTQVQKPLYSDFLPNNLFYTVMPNVFKSTF---QPSPVAIPESLLISDCAINPLYQEPIVKPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFG 1977
            G  +  D      +    +P TN  PS V+H+RN+  +  E+DL      FG +        +  AL+E E    A    ++ T       G+  +  YS    +E                               E+ +  ++L V + N + Y I+  VI ++    GKVLR+ +  K    Q LVE ++   A  +   +NG D+++ CC LK+EF+K  D +++QRQ+   RD+T   L ++E F       Q     T+ P +       P    +     +    P++  Y+         +   +  P   P S    D      Y++     P+        ++++  L + K+N D +F +   YG+V ++          ++ + T  + +     L    LFG
Sbjct:    6 GYHHGFDGPKRYRRDDNADP-TNPNPSIVVHVRNLHQKVTEADLLEALSNFGPVAYATCIPHSRMALVEFEDIEGAKACVNFATSNQINVGGQGALFNYSTSQCIE---------------------------RMGFESATPNKVLVVTVLNAQ-YPIDADVIYQISNAQGKVLRVAVMHKPTVVQALVEFESMEVAKAAKHAMNGADIYSGCCTLKVEFAK-PDRVRVQRQDKDQRDFT---LPDNESF-------QDTGRKTLIPAKPDDHYRRPYEDDRNHYDRHDYQAPSSYGYSSRGGGHSDYYGGDRGGPPHPPPSRYRDD------YEDRGYAQPAGGGP--GCVMMIYGLEHGKINCDMLFNILCQYGNVLRISFMRTKTETGIIELGTPEERQNVLDFLQGSALFG 372

[Close]

BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Fly
Match: heph (gene:FBgn0011224 transcript:FBtr0346192)

HSP 1 Score: 281.952 bits (720), Expect = 3.647e-84
Identity = 201/615 (32.68%), Postives = 314/615 (51.06%), Query Frame = 1

Query:  697 GVKRSIQNFNSNSLLGSSYSIDVDSN-ESKKSKLEPSTN-----TEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKNSNIDASVDAANKMNE-------------------------------KHRSIVDEWSSENKSD--RRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPLQEDEQFSLHFLDWQAKSVST-----VPPQQYPSLS--------TVPLLQTQVQKPL---YSDFLPNNLFYTVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPIVKPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEV-KHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
            GVKR      S + + +  S + + +  +KK+KLEP T       + SKV+H+RNI + + E+D+  L +PFG++ +++  K  NQA +E+     AT M   YT  PP   GR + VQ+S H  L+    ++N  A  D + +                                  ++ S V+   + N +     +LRV++E+L  Y ++  ++ ++FQR+GKVL+I+ FTKN   Q L++  ++ SA  +   L+GQ+++N CC L+I+ SK T +L ++  NDK RD+T   L   E   +  +      ++T     +  +Q PSLS         +P     +  PL   Y++ LPN   +++  +    T  P+                                  S+++LVSNLN E V  D++FTLFGVYGDV +V I      +AL+ M    QA  A  HL+ + L+GK I       + V       E   D  + + ++  PLHRFKKP SKN+ NIYPPS+ LHLSNIP S  E+D+   F  N F+  + + F KD+KMAL ++ S+E+A+ ALI +HN +L++S+HLRVSFSK+ I
Sbjct:   26 GVKRGSDELLSQAAVMAPASDNNNQDLATKKAKLEPGTVLAGGIAKASKVIHLRNIPNESGEADVIALGIPFGRVTNVLVLKGKNQAFIEMADEISATSMVSCYTVTPPQMRGRMVYVQFSNHRELKTDQGHNNSTAHSDYSVQSPASGSPLPLSAAANATSNNANSSSDSNSAMGILQNTSAVNAGGNTNAAGGPNTVLRVIVESLM-YPVSLDILHQIFQRYGKVLKIVTFTKNNSFQALIQYPDANSAQHAKSLLDGQNIYNGCCTLRIDNSKLT-ALNVKYNNDKSRDFTNPALPPGEP-GVDIMPTAGGLMNTNDLLLIAARQRPSLSVNGLGAPGVLPPFALGLGTPLTGGYNNALPNLAAFSLANSGALQTTAPAMRGY------------------------------SNVLLVSNLNEEMVTPDALFTLFGVYGDVQRVKILYNKKDSALIQMAEPQQAYLAMSHLDKLRLWGKPIRVMASKHQAVQ---LPKEGQPDAGLTRDYSQNPLHRFKKPGSKNYQNIYPPSATLHLSNIPSSCSEDDIKEAFTSNSFEVKAFKFFPKDRKMALLQLLSVEEAVLALIKMHNHQLSESNHLRVSFSKSNI 604

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BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Fly
Match: heph (gene:FBgn0011224 transcript:FBtr0112865)

HSP 1 Score: 280.796 bits (717), Expect = 5.017e-84
Identity = 197/573 (34.38%), Postives = 299/573 (52.18%), Query Frame = 1

Query:  778 SKKSKLEPSTN-----TEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKNSNIDASVDAANKMNE-------------------------------KHRSIVDEWSSENKSD--RRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPLQEDEQFSLHFLDWQAKSVSTVPPQQYPSLSTVPLLQTQVQKP-LYSDFLPNNLFY-TVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPIVKPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEV-KHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
            +KK+KLEP T       + SKV+H+RNI + + E+D+  L +PFG++ +++  K  NQA +E+     AT M   YT  PP   GR + VQ+S H  L+    ++N  A  D + +                                  ++ S V+   + N +     +LRV++E+L  Y ++  ++ ++FQR+GKVL+I+ FTKN   Q L++  ++ SA  +   L+GQ+++N CC L+I+ SK T +L ++  NDK RD+T   L   E             V  +P       +   LL    Q+P L  D + N L    V+P        P       +L   + A   L     ++  + A    S+++LVSNLN E V  D++FTLFGVYGDV +V I      +AL+ M    QA  A  HL+ + L+GK I       + V       E   D  + + ++  PLHRFKKP SKN+ NIYPPS+ LHLSNIP S  E+D+   F  N F+  + + F KD+KMAL ++ S+E+A+ ALI +HN +L++S+HLRVSFSK+ I
Sbjct:   14 TKKAKLEPGTVLAGGIAKASKVIHLRNIPNESGEADVIALGIPFGRVTNVLVLKGKNQAFIEMADEISATSMVSCYTVTPPQMRGRMVYVQFSNHRELKTDQGHNNSTAHSDYSVQSPASGSPLPLSAAANATSNNANSSSDSNSAMGILQNTSAVNAGGNTNAAGGPNTVLRVIVESLM-YPVSLDILHQIFQRYGKVLKIVTFTKNNSFQALIQYPDANSAQHAKSLLDGQNIYNGCCTLRIDNSKLT-ALNVKYNNDKSRDFTNPALPPGE-----------PGVDIMPTAGGLMNTNDLLLIAARQRPSLSGDKIVNGLGAPGVLPPFALGLGTPLTGGYNNAL--PNLAAFSLANSGALQTTAPAMRGYSNVLLVSNLNEEMVTPDALFTLFGVYGDVQRVKILYNKKDSALIQMAEPQQAYLAMSHLDKLRLWGKPIRVMASKHQAVQ---LPKEGQPDAGLTRDYSQNPLHRFKKPGSKNYQNIYPPSATLHLSNIPSSCSEDDIKEAFTSNSFEVKAFKFFPKDRKMALLQLLSVEEAVLALIKMHNHQLSESNHLRVSFSKSNI 568

[Close]

BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Fly
Match: heph (gene:FBgn0011224 transcript:FBtr0300268)

HSP 1 Score: 280.411 bits (716), Expect = 9.881e-84
Identity = 197/573 (34.38%), Postives = 299/573 (52.18%), Query Frame = 1

Query:  778 SKKSKLEPSTN-----TEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKNSNIDASVDAANKMNE-------------------------------KHRSIVDEWSSENKSD--RRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPLQEDEQFSLHFLDWQAKSVSTVPPQQYPSLSTVPLLQTQVQKP-LYSDFLPNNLFY-TVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPIVKPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEV-KHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
            +KK+KLEP T       + SKV+H+RNI + + E+D+  L +PFG++ +++  K  NQA +E+     AT M   YT  PP   GR + VQ+S H  L+    ++N  A  D + +                                  ++ S V+   + N +     +LRV++E+L  Y ++  ++ ++FQR+GKVL+I+ FTKN   Q L++  ++ SA  +   L+GQ+++N CC L+I+ SK T +L ++  NDK RD+T   L   E             V  +P       +   LL    Q+P L  D + N L    V+P        P       +L   + A   L     ++  + A    S+++LVSNLN E V  D++FTLFGVYGDV +V I      +AL+ M    QA  A  HL+ + L+GK I       + V       E   D  + + ++  PLHRFKKP SKN+ NIYPPS+ LHLSNIP S  E+D+   F  N F+  + + F KD+KMAL ++ S+E+A+ ALI +HN +L++S+HLRVSFSK+ I
Sbjct:   27 TKKAKLEPGTVLAGGIAKASKVIHLRNIPNESGEADVIALGIPFGRVTNVLVLKGKNQAFIEMADEISATSMVSCYTVTPPQMRGRMVYVQFSNHRELKTDQGHNNSTAHSDYSVQSPASGSPLPLSAAANATSNNANSSSDSNSAMGILQNTSAVNAGGNTNAAGGPNTVLRVIVESLM-YPVSLDILHQIFQRYGKVLKIVTFTKNNSFQALIQYPDANSAQHAKSLLDGQNIYNGCCTLRIDNSKLT-ALNVKYNNDKSRDFTNPALPPGE-----------PGVDIMPTAGGLMNTNDLLLIAARQRPSLSGDKIVNGLGAPGVLPPFALGLGTPLTGGYNNAL--PNLAAFSLANSGALQTTAPAMRGYSNVLLVSNLNEEMVTPDALFTLFGVYGDVQRVKILYNKKDSALIQMAEPQQAYLAMSHLDKLRLWGKPIRVMASKHQAVQ---LPKEGQPDAGLTRDYSQNPLHRFKKPGSKNYQNIYPPSATLHLSNIPSSCSEDDIKEAFTSNSFEVKAFKFFPKDRKMALLQLLSVEEAVLALIKMHNHQLSESNHLRVSFSKSNI 581

[Close]

BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Fly
Match: heph (gene:FBgn0011224 transcript:FBtr0300269)

HSP 1 Score: 280.411 bits (716), Expect = 9.881e-84
Identity = 197/573 (34.38%), Postives = 299/573 (52.18%), Query Frame = 1

Query:  778 SKKSKLEPSTN-----TEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKNSNIDASVDAANKMNE-------------------------------KHRSIVDEWSSENKSD--RRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPLQEDEQFSLHFLDWQAKSVSTVPPQQYPSLSTVPLLQTQVQKP-LYSDFLPNNLFY-TVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPIVKPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEV-KHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
            +KK+KLEP T       + SKV+H+RNI + + E+D+  L +PFG++ +++  K  NQA +E+     AT M   YT  PP   GR + VQ+S H  L+    ++N  A  D + +                                  ++ S V+   + N +     +LRV++E+L  Y ++  ++ ++FQR+GKVL+I+ FTKN   Q L++  ++ SA  +   L+GQ+++N CC L+I+ SK T +L ++  NDK RD+T   L   E             V  +P       +   LL    Q+P L  D + N L    V+P        P       +L   + A   L     ++  + A    S+++LVSNLN E V  D++FTLFGVYGDV +V I      +AL+ M    QA  A  HL+ + L+GK I       + V       E   D  + + ++  PLHRFKKP SKN+ NIYPPS+ LHLSNIP S  E+D+   F  N F+  + + F KD+KMAL ++ S+E+A+ ALI +HN +L++S+HLRVSFSK+ I
Sbjct:   27 TKKAKLEPGTVLAGGIAKASKVIHLRNIPNESGEADVIALGIPFGRVTNVLVLKGKNQAFIEMADEISATSMVSCYTVTPPQMRGRMVYVQFSNHRELKTDQGHNNSTAHSDYSVQSPASGSPLPLSAAANATSNNANSSSDSNSAMGILQNTSAVNAGGNTNAAGGPNTVLRVIVESLM-YPVSLDILHQIFQRYGKVLKIVTFTKNNSFQALIQYPDANSAQHAKSLLDGQNIYNGCCTLRIDNSKLT-ALNVKYNNDKSRDFTNPALPPGE-----------PGVDIMPTAGGLMNTNDLLLIAARQRPSLSGDKIVNGLGAPGVLPPFALGLGTPLTGGYNNAL--PNLAAFSLANSGALQTTAPAMRGYSNVLLVSNLNEEMVTPDALFTLFGVYGDVQRVKILYNKKDSALIQMAEPQQAYLAMSHLDKLRLWGKPIRVMASKHQAVQ---LPKEGQPDAGLTRDYSQNPLHRFKKPGSKNYQNIYPPSATLHLSNIPSSCSEDDIKEAFTSNSFEVKAFKFFPKDRKMALLQLLSVEEAVLALIKMHNHQLSESNHLRVSFSKSNI 581

[Close]

BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Fly
Match: heph (gene:FBgn0011224 transcript:FBtr0300267)

HSP 1 Score: 280.411 bits (716), Expect = 9.881e-84
Identity = 197/573 (34.38%), Postives = 299/573 (52.18%), Query Frame = 1

Query:  778 SKKSKLEPSTN-----TEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKNSNIDASVDAANKMNE-------------------------------KHRSIVDEWSSENKSD--RRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPLQEDEQFSLHFLDWQAKSVSTVPPQQYPSLSTVPLLQTQVQKP-LYSDFLPNNLFY-TVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPIVKPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEV-KHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
            +KK+KLEP T       + SKV+H+RNI + + E+D+  L +PFG++ +++  K  NQA +E+     AT M   YT  PP   GR + VQ+S H  L+    ++N  A  D + +                                  ++ S V+   + N +     +LRV++E+L  Y ++  ++ ++FQR+GKVL+I+ FTKN   Q L++  ++ SA  +   L+GQ+++N CC L+I+ SK T +L ++  NDK RD+T   L   E             V  +P       +   LL    Q+P L  D + N L    V+P        P       +L   + A   L     ++  + A    S+++LVSNLN E V  D++FTLFGVYGDV +V I      +AL+ M    QA  A  HL+ + L+GK I       + V       E   D  + + ++  PLHRFKKP SKN+ NIYPPS+ LHLSNIP S  E+D+   F  N F+  + + F KD+KMAL ++ S+E+A+ ALI +HN +L++S+HLRVSFSK+ I
Sbjct:   27 TKKAKLEPGTVLAGGIAKASKVIHLRNIPNESGEADVIALGIPFGRVTNVLVLKGKNQAFIEMADEISATSMVSCYTVTPPQMRGRMVYVQFSNHRELKTDQGHNNSTAHSDYSVQSPASGSPLPLSAAANATSNNANSSSDSNSAMGILQNTSAVNAGGNTNAAGGPNTVLRVIVESLM-YPVSLDILHQIFQRYGKVLKIVTFTKNNSFQALIQYPDANSAQHAKSLLDGQNIYNGCCTLRIDNSKLT-ALNVKYNNDKSRDFTNPALPPGE-----------PGVDIMPTAGGLMNTNDLLLIAARQRPSLSGDKIVNGLGAPGVLPPFALGLGTPLTGGYNNAL--PNLAAFSLANSGALQTTAPAMRGYSNVLLVSNLNEEMVTPDALFTLFGVYGDVQRVKILYNKKDSALIQMAEPQQAYLAMSHLDKLRLWGKPIRVMASKHQAVQ---LPKEGQPDAGLTRDYSQNPLHRFKKPGSKNYQNIYPPSATLHLSNIPSSCSEDDIKEAFTSNSFEVKAFKFFPKDRKMALLQLLSVEEAVLALIKMHNHQLSESNHLRVSFSKSNI 581

[Close]

BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Zebrafish
Match: ptbp2b (polypyrimidine tract binding protein 2b [Source:ZFIN;Acc:ZDB-GENE-060810-49])

HSP 1 Score: 301.982 bits (772), Expect = 2.817e-92
Identity = 206/570 (36.14%), Postives = 302/570 (52.98%), Query Frame = 1

Query:  697 GVKRSIQNFNSNSLLGS-SYSIDVDSNESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLK-NSNIDASVDAANKMNEKHRSIVDEWSSE--NKSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPLQEDEQFSLHFLDWQAKSVSTVPPQQYPSLS--TVPLLQTQVQKPLYSDFLPNNLFYTVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPIV-----KPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEVKHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
            GVKRS  +  S SL  S + S+  + ++SKK ++E S ++ PS+V+HIR + +   E+++  L +PFGK+ +++  K  NQA LEL     A  M +YYT   P      + +QYS H  L+     N    A + A + + E      D  S      +   +LR++I+N+  Y +   V+ ++F +FG V++II FTKN Q Q L++  + ++A  + L L+GQ+++N CC L+I+FSK  + L ++  NDK RDYT   L           D Q      V P    +LS  +  LL T           P+ +           T   S    P SL     AI+PL           +   S +++   ++LVSNLN E V   S+FTLFGVYGDV +V I      +AL+ M   +QA+ A  HLN   ++GKII   L   + V   +    L+     K FT++PLHRFKKP SKN  NI+PPS+ LHLSNIP +  EEDL  LF ++G    + + FQ D+KM+L +M + E+AI ALI LHN+ +     LRVSFSK+ I
Sbjct:   11 GVKRSSDDLLSGSLYSSPNSSVTANGSDSKKLRVEDSMDSPPSRVIHIRKLPNEVSETEVIALGLPFGKVTNILMLKGKNQAFLELGTEEAAVTMVNYYTAVTPQVRNVPVFIQYSNHKELKTDSALNQRAQAVLQAVSAVQEGGSPSSDMASKSVLTPAPSPVLRIIIDNMF-YPVTLDVLQQIFSKFGTVMKIITFTKNNQFQALLQFSDPVNAQQAKLSLDGQNIYNSCCTLRIDFSKLVN-LNVKYNNDKSRDYTRPELPAG--------DGQPP----VDPSMAAALSKDSPSLLGT-----------PSGMV----------TSYSSGGGFPSSL----GAISPLSAAAAAAAAAGRVALSGHSVPGGVLLVSNLNDEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMSDGNQAQLAMSHLNGQKMYGKIIRVTLSKHQTV--QLPREGLDDQGLTKDFTSSPLHRFKKPGSKNFQNIFPPSATLHLSNIPDNVTEEDLRLLFSNSGGTVKAFKFFQ-DRKMSLLQMATAEEAIQALIDLHNYDMGRGHRLRVSFSKSTI 538

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BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Zebrafish
Match: ptbp3 (polypyrimidine tract binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-091116-1])

HSP 1 Score: 298.516 bits (763), Expect = 4.173e-91
Identity = 196/554 (35.38%), Postives = 294/554 (53.07%), Query Frame = 1

Query:  745 SSYSIDVDSNESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKN----SNIDASVDAANKMNEKHRSIVDEWSSENKS----DRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPL-QEDEQFSLHFLDWQAKSVSTVPPQQYPSLST-VPLLQTQVQKPLYSDFLPNNLFYTVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPIVKPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEV-KHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
            S+ S   +  +SK+ K + S    PS+VLH+R +     E+++  L VPFGK+ +++  K  NQA +E+     A  M +YYT   P    + + +QYS H   ELK  N        A++ A N ++  + S+    ++ +         +LR+++ENL  Y ++  V+ ++F +FG VL+II FTKN Q Q L++  + ++AH + + L+GQ+++N CC L++EFSK T SL ++  NDK RD+T   L   D Q +L      A     +    YP  +   P +           F    L    MP          P+ IP S +    AI+ +    I            S++LVSNLN + ++   +F LFGVYGDV +V I       AL+ M   +QA+ A  HLN   L+GK+I   +   + V       E   D  + K F+ +PLHRFKKP SKN  NI+PPS+ LHLSNIP S  ++ L  LF  +G+   + + FQKD+KMAL ++ S+E+AI ALI LHN  L ++ HLRVSFSK+ I
Sbjct:    4 STPSTTANGTDSKQYKGDRSP-CAPSRVLHVRKVPIEVSEAEVVSLGVPFGKVTNLLMLKGKNQAFIEMASEEAAMTMVNYYTTATPHVRNQPVYIQYSNH--RELKTDNLPNQGRAQAALQAVNAVHTGNMSLSGTATASDGGMMPGQSPVLRIIVENLY-YPVSLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPMNAHHAKVALDGQNIYNGCCTLRVEFSKLT-SLNVKYNNDKSRDFTRLDLPSGDGQPTLDPTMQTAFGAPGIISSPYPGAAGFAPAI----------GFPQAGLSMQAMPGAL------GPLTIPSSAMTGRMAIHGMTPTAI-----------HSVLLVSNLNPDSISPHELFILFGVYGDVHRVKILFNKKENALIQMADATQAQLAMSHLNGQRLYGKVIRVTISKHQTVQ---LPREGQEDQGLTKDFSGSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSTTDDFLKDLFASSGYTVKAFKFFQKDRKMALIQLGSVEEAIQALIHLHNHDLGENHHLRVSFSKSTI 522

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Query:  745 SSYSIDVDSNESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKN----SNIDASVDAANKMNEKHRSIVDEWSSENKS----DRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPL-QEDEQFSLHFLDWQAKSVSTVPPQQYPSLST-VPLLQTQVQKPLYSDFLPNNLFYTVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPIVKPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEV-KHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
            S+ S   +  +SK+ K + S    PS+VLH+R +     E+++  L VPFGK+ +++  K  NQA +E+     A  M +YYT   P    + + +QYS H   ELK  N        A++ A N ++  + S+    ++ +         +LR+++ENL  Y ++  V+ ++F +FG VL+II FTKN Q Q L++  + ++AH + + L+GQ+++N CC L++EFSK T SL ++  NDK RD+T   L   D Q +L      A     +    YP  +   P +           F    L    MP          P+ IP S +    AI+ +    I            S++LVSNLN + ++   +F LFGVYGDV +V I       AL+ M   +QA+ A  HLN   L+GK+I   +   + V       E   D  + K F+ +PLHRFKKP SKN  NI+PPS+ LHLSNIP S  ++ L  LF  +G+   + + FQKD+KMAL ++ S+E+AI ALI LHN  L ++ HLRVSFSK+ I
Sbjct:    4 STPSTTANGTDSKQYKGDRSP-CAPSRVLHVRKVPIEVSEAEVVSLGVPFGKVTNLLMLKGKNQAFIEMASEEAAMTMVNYYTTATPHVRNQPVYIQYSNH--RELKTDNLPNQGRAQAALQAVNAVHTGNMSLSGTATASDGGMMPGQSPVLRIIVENLY-YPVSLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPMNAHHAKVALDGQNIYNGCCTLRVEFSKLT-SLNVKYNNDKSRDFTRLDLPSGDGQPTLDPTMQTAFGAPGIISSPYPGAAGFAPAI----------GFPQAGLSMQAMPGAL------GPLTIPSSAMTGRMAIHGMTPTAI-----------HSVLLVSNLNPDSISPHELFILFGVYGDVHRVKILFNKKENALIQMADATQAQLAMSHLNGQRLYGKVIRVTISKHQTVQ---LPREGQEDQGLTKDFSGSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSTTDDFLKDLFASSGYTVKAFKFFQKDRKMALIQLGSVEEAIQALIHLHNHDLGENHHLRVSFSKSTI 522

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BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Zebrafish
Match: ptbp3 (polypyrimidine tract binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-091116-1])

HSP 1 Score: 296.59 bits (758), Expect = 1.807e-90
Identity = 194/548 (35.40%), Postives = 291/548 (53.10%), Query Frame = 1

Query:  763 VDSNESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKN----SNIDASVDAANKMNEKHRSIVDEWSSENKS----DRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPL-QEDEQFSLHFLDWQAKSVSTVPPQQYPSLST-VPLLQTQVQKPLYSDFLPNNLFYTVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPIVKPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEV-KHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
             +  +SK+ K + S    PS+VLH+R +     E+++  L VPFGK+ +++  K  NQA +E+     A  M +YYT   P    + + +QYS H   ELK  N        A++ A N ++  + S+    ++ +         +LR+++ENL  Y ++  V+ ++F +FG VL+II FTKN Q Q L++  + ++AH + + L+GQ+++N CC L++EFSK T SL ++  NDK RD+T   L   D Q +L      A     +    YP  +   P +           F    L    MP          P+ IP S +    AI+ +    I            S++LVSNLN + ++   +F LFGVYGDV +V I       AL+ M   +QA+ A  HLN   L+GK+I   +   + V       E   D  + K F+ +PLHRFKKP SKN  NI+PPS+ LHLSNIP S  ++ L  LF  +G+   + + FQKD+KMAL ++ S+E+AI ALI LHN  L ++ HLRVSFSK+ I
Sbjct:    2 ANGTDSKQYKGDRSP-CAPSRVLHVRKVPIEVSEAEVVSLGVPFGKVTNLLMLKGKNQAFIEMASEEAAMTMVNYYTTATPHVRNQPVYIQYSNH--RELKTDNLPNQGRAQAALQAVNAVHTGNMSLSGTATASDGGMMPGQSPVLRIIVENLY-YPVSLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPMNAHHAKVALDGQNIYNGCCTLRVEFSKLT-SLNVKYNNDKSRDFTRLDLPSGDGQPTLDPTMQTAFGAPGIISSPYPGAAGFAPAI----------GFPQAGLSMQAMPGAL------GPLTIPSSAMTGRMAIHGMTPTAI-----------HSVLLVSNLNPDSISPHELFILFGVYGDVHRVKILFNKKENALIQMADATQAQLAMSHLNGQRLYGKVIRVTISKHQTVQ---LPREGQEDQGLTKDFSGSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSTTDDFLKDLFASSGYTVKAFKFFQKDRKMALIQLGSVEEAIQALIHLHNHDLGENHHLRVSFSKSTI 514

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BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Zebrafish
Match: ptbp1b (polypyrimidine tract binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-030131-9796])

HSP 1 Score: 294.664 bits (753), Expect = 3.577e-89
Identity = 195/545 (35.78%), Postives = 285/545 (52.29%), Query Frame = 1

Query:  763 VDSNESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKNS----NIDASVDAANKMNEKHRSIVDEWSSENKSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPL-QEDEQFSL--HFLDWQAKSVSTVPPQQYPSLSTVPLLQTQVQKPLYSDFLPNNLFYTVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPIVKPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEV-KHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
             + N+SKK K +  +   PS+V+H+R + +   E+++  L +PFGK+ +++  K  NQA LE+     A  M  YY+   P      + +QYS H   ELK  NS       A++ A N +     ++     S       +LRV++ENL  Y +   V+ ++F +FG VL++I FTKN Q Q L++  + ++A  + L L+GQ+++N CC L+I FSK T SL ++  NDK RDYT   L   D Q +L  H +     +   +    Y S    P      Q  L    +P  L    +P    +    S +  P +L  + C                       ++LVSNLN E+V    +F LFGVYGDV +V I       AL+ M   +QA+ A  HLN   L+G+ +   L     V       E + D  + K ++N+PLHRFKKP SKN+ NI+PPSS LHLSNIP S  E+DL  LF  +G    + + FQKD+KMAL +M+S+E+AI +LI  HN  L ++ HLRVSFSK+ I
Sbjct:   51 ANGNDSKKFKGDIRSPAVPSRVIHVRKLPNDINEAEVIALGLPFGKVTNLLMLKGKNQAFLEMNSEEAAQTMVTYYSSVTPVIRNHPIFMQYSNHK--ELKTDNSPNQVRAQAALQAVNAVQTGSLTLGGVDPSGMTGPSPVLRVIVENLF-YPVTLDVLHQIFSKFGTVLKVITFTKNNQFQALLQFTDGLTAQHAKLALDGQNIYNGCCTLRISFSKLT-SLNVKYNNDKSRDYTRPDLPTGDSQPALEHHAVAAAFAAPGIISAAPYASAHAFPPAFAIQQAGLTIPGVPGALASLTIPGAAAAAAAASRLGFP-TLTGTHC-----------------------VMLVSNLNPERVTPHCLFILFGVYGDVLRVKIMFNKKENALIQMSDGTQAQLAMSHLNGQKLYGRPLRITLSKHTTVQMP---REGHEDQGLTKDYSNSPLHRFKKPGSKNYSNIFPPSSTLHLSNIPPSVVEDDLKLLFGSSGALVKNFKFFQKDRKMALIQMSSVEEAIESLIQFHNHDLGENHHLRVSFSKSTI 564

[Close]

BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Xenopus
Match: ptbp1 (polypyrimidine tract binding protein 1 [Source:NCBI gene;Acc:496557])

HSP 1 Score: 288.5 bits (737), Expect = 1.394e-86
Identity = 198/549 (36.07%), Postives = 286/549 (52.09%), Query Frame = 1

Query:  766 DSNESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKNS-----------NIDASVDAANKMNEKHRSIVDEWSSENKSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPL-QEDEQFSLHFLDWQAKSVSTVPPQQYPSLSTVPLLQTQVQKPLYSDFLPNNLFYTVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPIVKPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEV-KHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
            + N+SKK K +  +    S+V+H+R +     E+++  L +PFGK+ +++  K  NQA LE+     A  M +YYT   P    + + +QYS H   ELK  NS            +++ V     ++    ++    +   +S   +LR+++ENL  Y +   V+ ++F +FG VL+II FTKN Q Q L++  + +SA  + L L+GQ+++N CC L+I+FSK T SL ++  NDK RDYT   L   D Q SL        +   +    Y S    P        PLY     N LF    PN +      +   +      +  A     +  I       N    S++LVSNLN E+V    +F LFGVYGDV +V I       ALV M   +QA+ A  HLN   L GK +   +   + V       E   D  + K ++ +PLHRFKKP SKN  NI+PPS+ LHLSNIP S  EEDL  LF +NG+     + FQKD+KMAL +M S+E+AI +LI LHN  + ++ HLRVSFSK+ I
Sbjct:   44 NGNDSKKFKGDSRSVAVGSRVIHVRKLPGDVTEAEVISLGLPFGKVTNLLMLKGKNQAFLEMNTEEAANTMINYYTNVAPVLRSQPIYIQYSNHK--ELKTDNSPNQARAQAALQAVNSVVSGTTALSASAAAVDAGMAMSGQSP--VLRIIVENLF-YPVTLDVLQQIFSKFGTVLKIITFTKNNQFQALLQYGDPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT-SLNVKYNNDKSRDYTRPDLPSGDGQPSLDQTIAAFGAPGLISANPYASAGFPPAF-----APLY-----NPLFNINYPNAYVLGVHGTLAPLALPSAAAAAAAAAAGRLGIPGLGIPGN----SVLLVSNLNPERVTPQCLFILFGVYGDVHRVKILFNKKENALVQMADGNQAQLAMSHLNGQRLHGKPLRITVSKHQTVQ---LPREGQEDQGLTKDYSTSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKMLFSNNGYTVKGFKFFQKDRKMALIQMGSVEEAIESLIELHNHDMGENHHLRVSFSKSTI 569

[Close]

BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Xenopus
Match: taco1 (translational activator of mitochondrially encoded cytochrome c oxidase I [Source:Xenbase;Acc:XB-GENE-986962])

HSP 1 Score: 286.574 bits (732), Expect = 1.737e-86
Identity = 198/546 (36.26%), Postives = 287/546 (52.56%), Query Frame = 1

Query:  763 VDSNESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKN----SNIDASVDAANKMNEKHRSIVDEWSSEN---KSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPLQEDEQFSLHFLDWQAKSVSTVPPQ-QYPSLSTVPLLQTQVQKPLYSDFLPNNLFYTVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPIVKPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEV-KHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
             + N+SKK K + S    PS+VLHIR I +   ES++  L +PFGK+ +++  K  +QA LE+     A  M +YYT  PP    + + +QYS H   ELK  N    +   A++ A N +     ++      E         +LR+++ENL  Y +   V+ ++F +FG V++II FTKN Q Q L++  + ++AH + + L+GQ+++N CC L+IEFSK T SL ++  NDK RD+T        +  L   D Q    +T+      P + + P        P    F    L    +P +        P+A+  S +    AI           P        S++LVSNLN + +    +F LFGVYGDV +V I       ALV M   +QA+ A  HLN   L G+++   L   + V       E + D  + K +TN+PLHRFKKP SKN  NI+PPS+ LHLSNIP    +EDL  LF   G      + FQKD+KMAL ++ S+E+AI ALI LHN  L ++ HLRVSFSK++I
Sbjct:    9 ANGNDSKKFKGDRSP-CSPSRVLHIRKIPNDVTESEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVSMVNYYTPVPPHVRSQPVYIQYSNH--RELKTDNLPNQARAQAALQAVNTLQSGGLTLTSVPGGEGLVLSGQSPVLRIIVENLF-YPVTLEVLHQIFSKFGTVIKIITFTKNNQFQALLQYADPMNAHHAKVALDGQNIYNACCTLRIEFSKLT-SLNVKYNNDKSRDFT--------RLDLPTGDGQPSLDTTMAAAFGAPGIISSPYAGAAGFAPAIG-FPQAGLSVPGVPGL-------GPLALTTSAITGRMAI-----------PGMTAIPGHSVLLVSNLNPDAILPHGLFILFGVYGDVQRVKILFNKKENALVQMTDATQAQLAMSHLNGQRLHGRVLRITLSKHQSVQ---LPREGHEDQGLTKDYTNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPLVTDEDLKRLFASTGCSVKGFKFFQKDRKMALIQLGSVEEAILALIELHNHDLGENHHLRVSFSKSMI 519

[Close]

BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Xenopus
Match: taco1 (translational activator of mitochondrially encoded cytochrome c oxidase I [Source:Xenbase;Acc:XB-GENE-986962])

HSP 1 Score: 286.574 bits (732), Expect = 1.919e-86
Identity = 198/548 (36.13%), Postives = 288/548 (52.55%), Query Frame = 1

Query:  757 IDVDSNESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKN----SNIDASVDAANKMNEKHRSIVDEWSSEN---KSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPLQEDEQFSLHFLDWQAKSVSTVPPQ-QYPSLSTVPLLQTQVQKPLYSDFLPNNLFYTVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPIVKPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEV-KHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
            +  + N+SKK K + S    PS+VLHIR I +   ES++  L +PFGK+ +++  K  +QA LE+     A  M +YYT  PP    + + +QYS H   ELK  N    +   A++ A N +     ++      E         +LR+++ENL  Y +   V+ ++F +FG V++II FTKN Q Q L++  + ++AH + + L+GQ+++N CC L+IEFSK T SL ++  NDK RD+T        +  L   D Q    +T+      P + + P        P    F    L    +P +        P+A+  S +    AI           P        S++LVSNLN + +    +F LFGVYGDV +V I       ALV M   +QA+ A  HLN   L G+++   L   + V       E + D  + K +TN+PLHRFKKP SKN  NI+PPS+ LHLSNIP    +EDL  LF   G      + FQKD+KMAL ++ S+E+AI ALI LHN  L ++ HLRVSFSK++I
Sbjct:   18 LQANGNDSKKFKGDRSP-CSPSRVLHIRKIPNDVTESEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVSMVNYYTPVPPHVRSQPVYIQYSNH--RELKTDNLPNQARAQAALQAVNTLQSGGLTLTSVPGGEGLVLSGQSPVLRIIVENLF-YPVTLEVLHQIFSKFGTVIKIITFTKNNQFQALLQYADPMNAHHAKVALDGQNIYNACCTLRIEFSKLT-SLNVKYNNDKSRDFT--------RLDLPTGDGQPSLDTTMAAAFGAPGIISSPYAGAAGFAPAIG-FPQAGLSVPGVPGL-------GPLALTTSAITGRMAI-----------PGMTAIPGHSVLLVSNLNPDAILPHGLFILFGVYGDVQRVKILFNKKENALVQMTDATQAQLAMSHLNGQRLHGRVLRITLSKHQSVQ---LPREGHEDQGLTKDYTNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPLVTDEDLKRLFASTGCSVKGFKFFQKDRKMALIQLGSVEEAILALIELHNHDLGENHHLRVSFSKSMI 530

[Close]

BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Xenopus
Match: taco1 (translational activator of mitochondrially encoded cytochrome c oxidase I [Source:Xenbase;Acc:XB-GENE-986962])

HSP 1 Score: 286.574 bits (732), Expect = 2.938e-86
Identity = 198/546 (36.26%), Postives = 287/546 (52.56%), Query Frame = 1

Query:  763 VDSNESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKN----SNIDASVDAANKMNEKHRSIVDEWSSEN---KSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPLQEDEQFSLHFLDWQAKSVSTVPPQ-QYPSLSTVPLLQTQVQKPLYSDFLPNNLFYTVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPIVKPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEV-KHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
             + N+SKK K + S    PS+VLHIR I +   ES++  L +PFGK+ +++  K  +QA LE+     A  M +YYT  PP    + + +QYS H   ELK  N    +   A++ A N +     ++      E         +LR+++ENL  Y +   V+ ++F +FG V++II FTKN Q Q L++  + ++AH + + L+GQ+++N CC L+IEFSK T SL ++  NDK RD+T        +  L   D Q    +T+      P + + P        P    F    L    +P +        P+A+  S +    AI           P        S++LVSNLN + +    +F LFGVYGDV +V I       ALV M   +QA+ A  HLN   L G+++   L   + V       E + D  + K +TN+PLHRFKKP SKN  NI+PPS+ LHLSNIP    +EDL  LF   G      + FQKD+KMAL ++ S+E+AI ALI LHN  L ++ HLRVSFSK++I
Sbjct:   36 ANGNDSKKFKGDRSP-CSPSRVLHIRKIPNDVTESEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVSMVNYYTPVPPHVRSQPVYIQYSNH--RELKTDNLPNQARAQAALQAVNTLQSGGLTLTSVPGGEGLVLSGQSPVLRIIVENLF-YPVTLEVLHQIFSKFGTVIKIITFTKNNQFQALLQYADPMNAHHAKVALDGQNIYNACCTLRIEFSKLT-SLNVKYNNDKSRDFT--------RLDLPTGDGQPSLDTTMAAAFGAPGIISSPYAGAAGFAPAIG-FPQAGLSVPGVPGL-------GPLALTTSAITGRMAI-----------PGMTAIPGHSVLLVSNLNPDAILPHGLFILFGVYGDVQRVKILFNKKENALVQMTDATQAQLAMSHLNGQRLHGRVLRITLSKHQSVQ---LPREGHEDQGLTKDYTNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPLVTDEDLKRLFASTGCSVKGFKFFQKDRKMALIQLGSVEEAILALIELHNHDLGENHHLRVSFSKSMI 546

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BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Xenopus
Match: taco1 (translational activator of mitochondrially encoded cytochrome c oxidase I [Source:Xenbase;Acc:XB-GENE-986962])

HSP 1 Score: 286.574 bits (732), Expect = 4.702e-86
Identity = 200/548 (36.50%), Postives = 289/548 (52.74%), Query Frame = 1

Query:  763 VDSNESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKN----SNIDASVDAANKMNEKHRSIVDEWSSEN---KSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPLQEDEQFSLHFLDWQAKSVSTVPPQ-QYPSLSTVPLLQTQVQKPLYSDFLPNNLFYTVM--PNVFKSTFQPSPVAIPESLLISDCAINPLYQEPIVKPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEV-KHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
             + N+SKK K + S    PS+VLHIR I +   ES++  L +PFGK+ +++  K  +QA LE+     A  M +YYT  PP    + + +QYS H   ELK  N    +   A++ A N +     ++      E         +LR+++ENL  Y +   V+ ++F +FG V++II FTKN Q Q L++  + ++AH + + L+GQ+++N CC L+IEFSK T SL ++  NDK RD+T        +  L   D Q    +T+      P + + P        P      P  +F T +  P V        P+A+  S +    AI           P        S++LVSNLN + +    +F LFGVYGDV +V I       ALV M   +QA+ A  HLN   L G+++   L   + V       E + D  + K +TN+PLHRFKKP SKN  NI+PPS+ LHLSNIP    +EDL  LF   G      + FQKD+KMAL ++ S+E+AI ALI LHN  L ++ HLRVSFSK++I
Sbjct:   50 ANGNDSKKFKGDRSP-CSPSRVLHIRKIPNDVTESEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVSMVNYYTPVPPHVRSQPVYIQYSNH--RELKTDNLPNQARAQAALQAVNTLQSGGLTLTSVPGGEGLVLSGQSPVLRIIVENLF-YPVTLEVLHQIFSKFGTVIKIITFTKNNQFQALLQYADPMNAHHAKVALDGQNIYNACCTLRIEFSKLT-SLNVKYNNDKSRDFT--------RLDLPTGDGQPSLDTTMAAAFGAPGIISSPYAGAAGFAPAIG--FPQIVFSTGLSVPGVPGL----GPLALTTSAITGRMAI-----------PGMTAIPGHSVLLVSNLNPDAILPHGLFILFGVYGDVQRVKILFNKKENALVQMTDATQAQLAMSHLNGQRLHGRVLRITLSKHQSVQ---LPREGHEDQGLTKDYTNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPLVTDEDLKRLFASTGCSVKGFKFFQKDRKMALIQLGSVEEAILALIELHNHDLGENHHLRVSFSKSMI 564

[Close]

BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Mouse
Match: Ptbp2 (polypyrimidine tract binding protein 2 [Source:MGI Symbol;Acc:MGI:1860489])

HSP 1 Score: 315.849 bits (808), Expect = 1.859e-97
Identity = 205/569 (36.03%), Postives = 294/569 (51.67%), Query Frame = 1

Query:  697 GVKRSIQNFNSNSLLGSSYS------IDVDSNESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLE----LKLKNSNIDASVDAANKMNEKHRSIVDEWSSENKSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPLQEDEQFSLHFLDWQAKSVSTVPPQQYPSLSTVPLLQTQVQKPLYSDFLPNNLFYTVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPIVKPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEVKHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
            GVKR      S S+L S  S      +  + N+SKK K E   +  PS+VLHIR +     E+++  L +PFGK+ +++  K  NQA LEL     A  M +YY+   P    + + +QYS H  L+    L  +   +  +V A    N          S+   +   +LR++I+N+  Y +   V+ ++F +FG VL+II FTKN Q Q L++  + ++A  + L L+GQ+++N CC L+I+FSK  + L ++  NDK RDYT   L                          PS    P L      P  +           +P         SP+AIP +   +  A       P V      +A  ++++LVSNLN E V   S+FTLFGVYGDV +V I      +AL+ M   +Q++ A  HLN   ++GKII   L   + V   +    L+     K F N+PLHRFKKP SKN  NI+PPS+ LHLSNIP S  EEDL TLF + G    + + FQ+D KMAL +M ++E+AI ALI LHN+ L ++ HLRVSFSK+ I
Sbjct:   11 GVKRGSDELLSGSVLSSPNSNMSGMVVTANGNDSKKFKGEDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESAVTPAQSPVLRIIIDNMY-YPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYNACCTLRIDFSKLVN-LNVKYNNDKSRDYTRPDL--------------------------PSGDGQPALD-----PAIAAAFAKETSLLAVPGAL------SPLAIPNAAAAAAAAAAGRVGMPGV------SAGGNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTV--QLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQRDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSKSTI 532

[Close]

BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Mouse
Match: Ptbp2 (polypyrimidine tract binding protein 2 [Source:MGI Symbol;Acc:MGI:1860489])

HSP 1 Score: 310.071 bits (793), Expect = 2.772e-95
Identity = 205/569 (36.03%), Postives = 293/569 (51.49%), Query Frame = 1

Query:  697 GVKRSIQNFNSNSLLGSSYS------IDVDSNESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLE----LKLKNSNIDASVDAANKMNEKHRSIVDEWSSENKSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPLQEDEQFSLHFLDWQAKSVSTVPPQQYPSLSTVPLLQTQVQKPLYSDFLPNNLFYTVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPIVKPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEVKHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
            GVKR      S S+L S  S      +  + N+SKK K E   +  PS+VLHIR +     E+++  L +PFGK+ +++  K  NQA LEL     A  M +YY+   P    + + +QYS H  L+    L  +   +  +V A    N          S+   +   +LR++I+N+  Y +   V+ ++F +FG VL+II FTKN Q Q L++  + ++A  + L L+GQ+++N CC L+I+FSK  + L ++  NDK RDYT   L                          PS    P L      P  +           +P         SP+AIP +   +  A       P V      +A  ++++LVSNLN E V   S+FTLFGVYGDV +V I      +AL+ M   +Q++ A  HLN   ++GKII   L   + V   +    L+     K F N+PLHRFKKP SKN  NI+PPS+ LHLSNIP S  EEDL TLF + G    + + FQ D KMAL +M ++E+AI ALI LHN+ L ++ HLRVSFSK+ I
Sbjct:   11 GVKRGSDELLSGSVLSSPNSNMSGMVVTANGNDSKKFKGEDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESAVTPAQSPVLRIIIDNMY-YPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYNACCTLRIDFSKLVN-LNVKYNNDKSRDYTRPDL--------------------------PSGDGQPALD-----PAIAAAFAKETSLLAVPGAL------SPLAIPNAAAAAAAAAAGRVGMPGV------SAGGNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTV--QLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQ-DHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSKSTI 531

[Close]

BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Mouse
Match: Ptbp3 (polypyrimidine tract binding protein 3 [Source:MGI Symbol;Acc:MGI:1923334])

HSP 1 Score: 284.263 bits (726), Expect = 2.265e-85
Identity = 200/578 (34.60%), Postives = 298/578 (51.56%), Query Frame = 1

Query:  694 SGVKRSIQNFNSNSLLGSSYSIDVDSNESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKN-------SNIDASVDAANKMNEKHRSIVDEWSSENKSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPLQEDEQFSLHFLDWQAKSVSTVPPQQYPSLSTVPLLQTQVQKPLYSDFLPNNLFYTVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPI----------VKPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEV-KHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
            SGV       NS++    S  +  + N++KK K +      PS+VLH+R I     E+++  L +PFGK+ +++  K  +QA LE+     A  M +YYT   P    + + +QYS H   ELK  N            +V A    N           +       +LR++IENL  Y +   V+ ++F +FG VL+II FTKN Q Q L++  + ++A  + + L+GQ+++N CC L+I+FSK T SL ++  NDK RD+T        +  L   D Q            PSL          + P+ + F    +  +  P    + F P+ +A P++  +S  A+ P    P+          +  P ++    +S++LV+NLN + +    +F LFGVYGDV +V I       ALV M   SQA+ A  HL+   L+GK++   L   + V       E   D  + K F+N+PLHRFKKP SKN  NI+PPS+ LHLSNIP S   +DL  LF + G    + + FQKD+KMAL ++ S+E+AI ALI LHN  L ++ HLRVSFSK+ I
Sbjct:   23 SGVINGPSTMNSST----SAGVYANGNDNKKFKGD-RPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMINYYTPVTPHLRSQPVYIQYSNH--RELKTDNLPNQARAQAALQAVSAVQSGNLSLPGATANEGTLLPGQSPVLRIIIENLF-YPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYAKMALDGQNIYNACCTLRIDFSKLT-SLNVKYNNDKSRDFT--------RLDLPTGDGQ------------PSL----------EPPMAAAFGAPGIMSS--PYAGAAGFAPA-IAFPQAAGLSVPAV-PGALGPLTLTSSAVSGRMAIPGASGMPGNSVLLVTNLNPDFITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADASQAQLAMNHLSGQRLYGKVLRATLSKHQAVQ---LPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSKSTI 554

[Close]

BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Mouse
Match: Ptbp3 (polypyrimidine tract binding protein 3 [Source:MGI Symbol;Acc:MGI:1923334])

HSP 1 Score: 283.108 bits (723), Expect = 2.406e-85
Identity = 195/561 (34.76%), Postives = 292/561 (52.05%), Query Frame = 1

Query:  745 SSYSIDVDSNESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKN-------SNIDASVDAANKMNEKHRSIVDEWSSENKSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPLQEDEQFSLHFLDWQAKSVSTVPPQQYPSLSTVPLLQTQVQKPLYSDFLPNNLFYTVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPI----------VKPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEV-KHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
            +S  +  + N++KK K +      PS+VLH+R I     E+++  L +PFGK+ +++  K  +QA LE+     A  M +YYT   P    + + +QYS H   ELK  N            +V A    N           +       +LR++IENL  Y +   V+ ++F +FG VL+II FTKN Q Q L++  + ++A  + + L+GQ+++N CC L+I+FSK T SL ++  NDK RD+T        +  L   D Q            PSL          + P+ + F    +  +  P    + F P+ +A P++  +S  A+ P    P+          +  P ++    +S++LV+NLN + +    +F LFGVYGDV +V I       ALV M   SQA+ A  HL+   L+GK++   L   + V       E   D  + K F+N+PLHRFKKP SKN  NI+PPS+ LHLSNIP S   +DL  LF + G    + + FQKD+KMAL ++ S+E+AI ALI LHN  L ++ HLRVSFSK+ I
Sbjct:    5 TSAGVYANGNDNKKFKGD-RPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMINYYTPVTPHLRSQPVYIQYSNH--RELKTDNLPNQARAQAALQAVSAVQSGNLSLPGATANEGTLLPGQSPVLRIIIENLF-YPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYAKMALDGQNIYNACCTLRIDFSKLT-SLNVKYNNDKSRDFT--------RLDLPTGDGQ------------PSL----------EPPMAAAFGAPGIMSS--PYAGAAGFAPA-IAFPQAAGLSVPAV-PGALGPLTLTSSAVSGRMAIPGASGMPGNSVLLVTNLNPDFITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADASQAQLAMNHLSGQRLYGKVLRATLSKHQAVQ---LPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSKSTI 523

[Close]

BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Mouse
Match: Ptbp3 (polypyrimidine tract binding protein 3 [Source:MGI Symbol;Acc:MGI:1923334])

HSP 1 Score: 283.108 bits (723), Expect = 6.139e-85
Identity = 199/568 (35.04%), Postives = 295/568 (51.94%), Query Frame = 1

Query:  724 NSNSLLGSSYSIDVDSNESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKN-------SNIDASVDAANKMNEKHRSIVDEWSSENKSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPLQEDEQFSLHFLDWQAKSVSTVPPQQYPSLSTVPLLQTQVQKPLYSDFLPNNLFYTVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPI----------VKPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEV-KHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
            N  S + SS S   + N++KK K +      PS+VLH+R I     E+++  L +PFGK+ +++  K  +QA LE+     A  M +YYT   P    + + +QYS H   ELK  N            +V A    N           +       +LR++IENL  Y +   V+ ++F +FG VL+II FTKN Q Q L++  + ++A  + + L+GQ+++N CC L+I+FSK T SL ++  NDK RD+T        +  L   D Q            PSL          + P+ + F    +  +  P    + F P+ +A P++  +S  A+ P    P+          +  P ++    +S++LV+NLN + +    +F LFGVYGDV +V I       ALV M   SQA+ A  HL+   L+GK++   L   + V       E   D  + K F+N+PLHRFKKP SKN  NI+PPS+ LHLSNIP S   +DL  LF + G    + + FQKD+KMAL ++ S+E+AI ALI LHN  L ++ HLRVSFSK+ I
Sbjct:   27 NGPSTMNSSTSA-ANGNDNKKFKGD-RPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMINYYTPVTPHLRSQPVYIQYSNH--RELKTDNLPNQARAQAALQAVSAVQSGNLSLPGATANEGTLLPGQSPVLRIIIENLF-YPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYAKMALDGQNIYNACCTLRIDFSKLT-SLNVKYNNDKSRDFT--------RLDLPTGDGQ------------PSL----------EPPMAAAFGAPGIMSS--PYAGAAGFAPA-IAFPQAAGLSVPAV-PGALGPLTLTSSAVSGRMAIPGASGMPGNSVLLVTNLNPDFITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADASQAQLAMNHLSGQRLYGKVLRATLSKHQAVQ---LPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSKSTI 551

[Close]

BLAST of Polypyrimidine tract-binding protein 1 vs. UniProt/SwissProt
Match: sp|Q66H20|PTBP2_RAT (Polypyrimidine tract-binding protein 2 OS=Rattus norvegicus OX=10116 GN=Ptbp2 PE=1 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 1.939e-94
Identity = 205/569 (36.03%), Postives = 293/569 (51.49%), Query Frame = 1

Query:  697 GVKRSIQNFNSNSLLGSSYS------IDVDSNESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLE----LKLKNSNIDASVDAANKMNEKHRSIVDEWSSENKSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPLQEDEQFSLHFLDWQAKSVSTVPPQQYPSLSTVPLLQTQVQKPLYSDFLPNNLFYTVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPIVKPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEVKHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
            GVKR      S S+L S  S      +  + N+SKK K E   +  PS+VLHIR +     E+++  L +PFGK+ +++  K  NQA LEL     A  M +YY+   P    + + +QYS H  L+    L  +   +  +V A    N          S+   +   +LR++I+N+  Y +   V+ ++F +FG VL+II FTKN Q Q L++  + ++A  + L L+GQ+++N CC L+I+FSK  + L ++  NDK RDYT   L                          PS    P L      P  +           +P         SP+AIP +   +  A       P V      +A  ++++LVSNLN E V   S+FTLFGVYGDV +V I      +AL+ M   +Q++ A  HLN   ++GKII   L   + V   +    L+     K F N+PLHRFKKP SKN  NI+PPS+ LHLSNIP S  EEDL TLF + G    + + FQ D KMAL +M ++E+AI ALI LHN+ L ++ HLRVSFSK+ I
Sbjct:   11 GVKRGSDELLSGSVLSSPNSNMSGMVVTANGNDSKKFKGEDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESAVTPAQSPVLRIIIDNMY-YPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYNACCTLRIDFSKLVN-LNVKYNNDKSRDYTRPDL--------------------------PSGDGQPALD-----PAIAAAFAKETSLLAVPGAL------SPLAIPNAAAAAAAAAAGRVGMPGV------SAGGNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTV--QLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQ-DHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSKSTI 531

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BLAST of Polypyrimidine tract-binding protein 1 vs. UniProt/SwissProt
Match: sp|Q91Z31|PTBP2_MOUSE (Polypyrimidine tract-binding protein 2 OS=Mus musculus OX=10090 GN=Ptbp2 PE=1 SV=2)

HSP 1 Score: 310.071 bits (793), Expect = 1.939e-94
Identity = 205/569 (36.03%), Postives = 293/569 (51.49%), Query Frame = 1

Query:  697 GVKRSIQNFNSNSLLGSSYS------IDVDSNESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLE----LKLKNSNIDASVDAANKMNEKHRSIVDEWSSENKSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPLQEDEQFSLHFLDWQAKSVSTVPPQQYPSLSTVPLLQTQVQKPLYSDFLPNNLFYTVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPIVKPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEVKHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
            GVKR      S S+L S  S      +  + N+SKK K E   +  PS+VLHIR +     E+++  L +PFGK+ +++  K  NQA LEL     A  M +YY+   P    + + +QYS H  L+    L  +   +  +V A    N          S+   +   +LR++I+N+  Y +   V+ ++F +FG VL+II FTKN Q Q L++  + ++A  + L L+GQ+++N CC L+I+FSK  + L ++  NDK RDYT   L                          PS    P L      P  +           +P         SP+AIP +   +  A       P V      +A  ++++LVSNLN E V   S+FTLFGVYGDV +V I      +AL+ M   +Q++ A  HLN   ++GKII   L   + V   +    L+     K F N+PLHRFKKP SKN  NI+PPS+ LHLSNIP S  EEDL TLF + G    + + FQ D KMAL +M ++E+AI ALI LHN+ L ++ HLRVSFSK+ I
Sbjct:   11 GVKRGSDELLSGSVLSSPNSNMSGMVVTANGNDSKKFKGEDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESAVTPAQSPVLRIIIDNMY-YPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYNACCTLRIDFSKLVN-LNVKYNNDKSRDYTRPDL--------------------------PSGDGQPALD-----PAIAAAFAKETSLLAVPGAL------SPLAIPNAAAAAAAAAAGRVGMPGV------SAGGNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTV--QLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQ-DHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSKSTI 531

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BLAST of Polypyrimidine tract-binding protein 1 vs. UniProt/SwissProt
Match: sp|Q9UKA9|PTBP2_HUMAN (Polypyrimidine tract-binding protein 2 OS=Homo sapiens OX=9606 GN=PTBP2 PE=1 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 1.383e-93
Identity = 205/569 (36.03%), Postives = 293/569 (51.49%), Query Frame = 1

Query:  697 GVKRSIQNFNSNSLLGSSYS------IDVDSNESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLE----LKLKNSNIDASVDAANKMNEKHRSIVDEWSSENKSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPLQEDEQFSLHFLDWQAKSVSTVPPQQYPSLSTVPLLQTQVQKPLYSDFLPNNLFYTVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPIVKPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEVKHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
            GVKR      S S+L S  S      +  + N+SKK K E   +  PS+VLHIR +     E+++  L +PFGK+ +++  K  NQA LEL     A  M +YY+   P    + + +QYS H  L+    L  +   +  +V A    N          S+   +   +LR++I+N+  Y +   V+ ++F +FG VL+II FTKN Q Q L++  + ++A  + L L+GQ+++N CC L+I+FSK  + L ++  NDK RDYT   L                          PS    P L      P  +           +P         SP+AIP +   +  A       P V      +A  ++++LVSNLN E V   S+FTLFGVYGDV +V I      +AL+ M   +Q++ A  HLN   ++GKII   L   + V   +    L+     K F N+PLHRFKKP SKN  NI+PPS+ LHLSNIP S  EEDL TLF + G    + + FQ D KMAL +M ++E+AI ALI LHN+ L ++ HLRVSFSK+ I
Sbjct:   11 GVKRGSDELLSGSVLSSPNSNMSSMVVTANGNDSKKFKGEDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPAQSPVLRIIIDNMY-YPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYNACCTLRIDFSKLVN-LNVKYNNDKSRDYTRPDL--------------------------PSGDGQPALD-----PAIAAAFAKETSLLAVPGAL------SPLAIPNAAAAAAAAAAGRVGMPGV------SAGGNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTV--QLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQ-DHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSKSTI 531

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BLAST of Polypyrimidine tract-binding protein 1 vs. UniProt/SwissProt
Match: sp|Q29099|PTBP1_PIG (Polypyrimidine tract-binding protein 1 OS=Sus scrofa OX=9823 GN=PTBP1 PE=2 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 2.077e-85
Identity = 205/574 (35.71%), Postives = 289/574 (50.35%), Query Frame = 1

Query:  736 LLGSSYSIDVDSNESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKNS----------NIDASVDAANKMNEKHRSIVDEWSSENKSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPL-QEDEQFSLHFLDWQAKSVSTVPPQQYPSLSTVPLLQTQVQKPLYSDFLPNNLFYTVMPNVFKSTFQPSPVAIPESLLIS----DCAINPLYQEPIVKPPSSAN--------AIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIE-----VKHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
            ++ S+ +   + N+SKK K +  +   PS+V+HIR + S   E ++  L +PFGK+ +++  K  NQA +E+     A  M +YYT   P   G+ + +Q+S H   ELK  +S              SV + N +     +   +          +LR+++ENL  Y +   V+ ++F +FG VL+II FTKN Q Q L++  + +SA  + L L+GQ+++N CC L+I+FSK T SL ++  NDK RDYT   L   D Q SL   D    +    P      +S  P                           +     P   AIP++  +S      A+ PL         ++A            +S++LVSNLN E+V   S+F LFGVY DV +V I       ALV M   SQA+ A  HLN   L GK       P  I      N +L  + +      K + N+PLHRFKKP SKN  NI+PPS+ LHLSNIP S  EEDL  LF  NG      + FQKD+KMAL +M S+E+AI ALI LHN  L ++ HLRVSFSK+ I
Sbjct:   30 IMSSNSASTANGNDSKKFKGDNRSAGVPSRVIHIRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK--ELKTDSSPNQARAQAALQAVNSVQSGN-LALAASAAAVDAGMAMAGQSPVLRIIVENLF-YPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT-SLNVKYNNDKSRDYTRPDLPSGDNQPSL---DQTMAAAFGAPG----IMSASP---------------------------YAGAGFPPTFAIPQAATVSVPNVHGALAPLAIPSAAARAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYCDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKLHGK-------PVRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSISEEDLKILFSSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALIDLHNHDLGENHHLRVSFSKSTI 557

[Close]

BLAST of Polypyrimidine tract-binding protein 1 vs. UniProt/SwissProt
Match: sp|O95758|PTBP3_HUMAN (Polypyrimidine tract-binding protein 3 OS=Homo sapiens OX=9606 GN=PTBP3 PE=1 SV=2)

HSP 1 Score: 286.189 bits (731), Expect = 3.026e-85
Identity = 199/577 (34.49%), Postives = 299/577 (51.82%), Query Frame = 1

Query:  697 GVKRSIQNFNSNSLLGSSYSID------VDSNESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKN----SNIDASVDAANKMNEKHRSIVDEWSSENK---SDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPLQEDEQFSLHFLDWQAKSVSTVPPQQY----PSLSTVPLLQTQVQKPLYSDFLPNNLFYTVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPIVKPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEV-KHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
            G+KR      S+ ++   ++++       + N+SKK K +      PS+VLH+R I     E+++  L +PFGK+ +++  K  +QA LE+     A  M +YYT   P    + + +QYS H   ELK  N    +   A++ A + +     ++    S+E         +LR++IENL  Y +   V+ ++F +FG VL+II FTKN Q Q L++  + ++AH + + L+GQ+++N CC L+I+FSK T SL ++  NDK RD+T        +  L   D Q    S  PP       P + + P        P         L    +P          P+ I  S +    AI           P ++    +S++LV+NLN + +    +F LFGVYGDV +V I       ALV M   +QA+ A  HL+   L+GK++   L   + V       E   D  + K F+N+PLHRFKKP SKN  NI+PPS+ LHLSNIP S   +DL  LF + G    + + FQKD+KMAL ++ S+E+AI ALI LHN  L ++ HLRVSFSK+ I
Sbjct:   12 GLKRGSDELLSSGIINGPFTMNSSTPSTANGNDSKKFKRD-RPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYTPITPHLRSQPVYIQYSNH--RELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVLPGQSPVLRIIIENLF-YPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLT-SLNVKYNNDKSRDFT--------RLDLPTGDGQP---SLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGAL------GPLTITSSAVTGRMAI-----------PGASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLRATLSKHQAVQ---LPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSKSTI 552

[Close]

BLAST of Polypyrimidine tract-binding protein 1 vs. TrEMBL
Match: A0A3Q0KMW9 (Polypyrimidine tract binding protein, putative OS=Schistosoma mansoni OX=6183 PE=4 SV=1)

HSP 1 Score: 358.607 bits (919), Expect = 1.650e-109
Identity = 219/588 (37.24%), Postives = 328/588 (55.78%), Query Frame = 1

Query:  754 SIDVDSNESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKNSNIDASVDAANKMNEKHRSIVDEWSSENKSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPLQEDEQFSLHFLDWQAKSV---STVPPQQYPSLS-TVPLLQ-----TQVQKPLYSDFLPNNL-------------------------FYTVMPNVFKSTFQPSPVAI--------PESLLISDCAINPLYQEPIVKPPSSANAIDSSIIL-VSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNT-----ELNSDIEVKHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
            S+D+++ ++KKS+++      PS+V+HIRN+   A E++++L A+PFG +++MV +K+ NQAL+E+    EA ++  +Y +YP   +G+ +I Q+S H  LEL  +N  I  ++  AN++ ++     D   ++      +L VVI+N+    INH+++ K+F RFG +LR++IF +N Q +CL+E  N I A V++L LNGQ+++  CC L++EF K    L+++R+NDKCRDYT+SPL +DE  SL  L     +    ST+     PS+   +PL       T V +   S    N+L                         F  +      S   P+P  +        P + L +      L    I +  S+     +S +L VSNLN EKV  D++FTLFGVYGDV++V I       ALV      QA TA  HLN  PL+GK +         +A S FN      E N     K +TN+PLHRF+KPNSKN  NIY P+ VLHLSNIP +  EE++  +F   G+  +  +   KDKKMAL ++ +++ AI ALI LHN +LT++SHLR+SFSK  I
Sbjct:   32 SMDLETVDTKKSRVD-RLEASPSRVIHIRNMPGDATENEIALFAIPFGLLKNMVLSKRNNQALIEMHVLEEAVQLVAHYLKYPVTLHGKHLIFQFSTHSHLELISENDAIVNAIKNANRVVQQ-----DLPGAQTGVPNTVLHVVIDNIMGQQINHVILYKIFHRFGTILRVLIFLRNNQYRCLLEFQNHIQAFVAMLLLNGQNIYTGCCSLQVEFWKARGPLEVRRENDKCRDYTISPLTDDELNSLQALPGGVTASTNNSTINSISQPSIGQNIPLGNPTAAFTAVPQAAASGI--NDLAIQLTLLAQQSGLALTPAAAAATASFMALTAQGGNSAINPTPGTVLNAASLQGPRAALPTVQNQTQLLPNLINQSVSNLGQTGASTVLIVSNLNEEKVYPDALFTLFGVYGDVTRVKIMFNKKSTALVQFSDPQQALTALYHLNGQPLYGKPLK--------IAVSRFNIVQLPKEDNDVGLTKDYTNSPLHRFRKPNSKNFTNIYAPNHVLHLSNIPSAITEEEVRMIFETKGYHVTDFKFMMKDKKMALIQLENVDMAIQALIDLHNCQLTENSHLRISFSKTAI 603

[Close]

BLAST of Polypyrimidine tract-binding protein 1 vs. TrEMBL
Match: A0A183QYD0 (Uncharacterized protein OS=Schistosoma rodhaini OX=6188 PE=4 SV=1)

HSP 1 Score: 358.221 bits (918), Expect = 1.962e-109
Identity = 217/584 (37.16%), Postives = 329/584 (56.34%), Query Frame = 1

Query:  754 SIDVDSNESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKNSNIDASVDAANKMNEKHRSIVDEWSSENKSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPLQEDEQFSLHFLDWQAKSV---STVPPQQYPSLS-TVPLLQ-----TQVQKPLYSDFLPNNL-------------------------FYTVMPNVFKSTFQPSPVAI--------PESLLISDCAINPLYQEPIVKPPSSANAIDSSIIL-VSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEV-KHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
            S+D+++ ++KKS+++      PS+V+HIRN+   A E++++L A+PFG +++MV +K+ NQAL+E+    EA ++  +Y +YP   +G+ +I Q+S H  LEL  +N  I  ++  AN++ ++     D   ++      +L VVI+N+    INH+++ K+F RFG +LR++IF +N Q +CL+E  N I A V++L LNGQ+++  CC L++EF K    L+++R+NDKCRDYT+SPL +DE  SL  L     +    ST+     PS+   +PL       T V +   S    N+L                         F  +      S   P+P  +        P + L +      L    I +  S+     +S +L VSNLN EKV  D++FTLFGVYGDV++V I       ALV      QA TA  HLN  PL+GK +    LP E           ++D+ + K +TN+PLHRF+KPNSKN  NIY P+ VLHLSNIP +  EE++  +F   G+  +  +   KDKKMAL ++ +++ AI ALI LHN +LT++SHLR+SFSK  I
Sbjct:   32 SMDLETVDTKKSRVD-RLEASPSRVIHIRNMPGDATENEIALFAIPFGLLKNMVLSKRNNQALIEMHVLEEAVQLVAHYLKYPVTLHGKHLIFQFSTHSHLELISENDAIVNAIKNANRVVQQ-----DLPGAQTGVPNTVLHVVIDNIMGQQINHVILYKIFHRFGTILRVLIFLRNNQYRCLLEFQNHIQAFVAMLLLNGQNIYTGCCSLQVEFWKARGPLEVRRENDKCRDYTISPLTDDELNSLQALPGGVTASTNNSTINSISQPSIGQNIPLGNPTAAFTAVPQATASGI--NDLAIQLTLLAQQSGLALTPAAAAATASFMALTAQGGNSAINPTPGTVLNAASLQGPRAALPTVQNQTQLLPNLINQSVSNLGQTGASTVLIVSNLNEEKVYPDALFTLFGVYGDVTRVKIMFNKKSTALVQFSDPQQALTALYHLNGQPLYGKPLKIA-LPKE-----------DNDVGLTKDYTNSPLHRFRKPNSKNFTNIYAPNHVLHLSNIPSAITEEEVRMIFETKGYHVTDFKFMMKDKKMALIQLENVDMAIQALIDLHNCQLTENSHLRISFSKTAI 595

[Close]

BLAST of Polypyrimidine tract-binding protein 1 vs. TrEMBL
Match: A0A267FSF7 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig010779g2 PE=4 SV=1)

HSP 1 Score: 345.51 bits (885), Expect = 3.833e-105
Identity = 215/546 (39.38%), Postives = 317/546 (58.06%), Query Frame = 1

Query:  739 LGSSYSIDVDSNESKKSKLEPST-NTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKNSNIDASVDAANKMNEKHRSIVDEWSSENKSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPLQEDEQFSLHFLDWQAKSVSTVPPQQYPSLSTVPLLQTQVQKPLYSDFLPNNLFYTVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPIVKPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEVKHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
            LGS     ++ N++KK +LE      EPSKV+HIRN+   A E+D+  L VPFG++ +MV AKK NQALLE++    AT+M DYY ++P    GR +I+QYS H  L+ +  N+  D ++ +AN +   ++   DE  S       +LRV++ENL    +   V+ K+F RFG V +I+IF+KN   Q L+++ +S  A  + L LN Q+++N CC L+I+FSK  ++L ++  N+K RD+TV+    D   +    +      +T+ P   P L          Q P+ +  L         PN+    F P+   +P   + S  +    + + I+ P +S N    SI+LVSNL+ EK+  D++FTLFGVYGDV +V I       AL+     SQA+ A ++LN V LFG+ +          AQ     E       K FTN+PLHRFKKP+SKN  NI+PPS +LHLSNIPL   EE +  +F D GF   +++ FQK+KKMAL +M ++ED++ ALI LHN++L+ + HLRVSFSK++I
Sbjct:   44 LGSPME-HLEINDAKKVRLENHVPEPEPSKVVHIRNVPQDAIENDIVQLGVPFGQMTNMVLAKKKNQALLEMKTQETATKMVDYYAQHPVTIRGRTVIIQYSNHAELKTEQPNAAADNALSSANGLVSTYQQ--DEPPS-------VLRVIVENLM-APVTIEVLHKIFSRFGMVQKIVIFSKNNTFQALIQMGSSTEALAAKLVLNDQNIYNGCCTLRIDFSK-LNTLNVKFNNEKSRDFTVNRAPGDNPLAYFDPNLAPHLGATLFPAMIPGLEFA-------QAPILAQTLDGQ------PNL--GIF-PAAAQLPAMSMHSLTSPVAPFGQAIMAPQASVN----SILLVSNLDDEKITPDALFTLFGVYGDVQRVKIMYNKKDNALIQFTDASQAQQALQNLNGVRLFGRPLKIAF---SRHAQVALPKEGADAGLTKIFTNSPLHRFKKPHSKNFQNIFPPSQILHLSNIPLEVPEEKIKAIFEDFGFNVVAIKFFQKEKKMALVQMPTVEDSVIALIKLHNYQLSANYHLRVSFSKSVI 554

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BLAST of Polypyrimidine tract-binding protein 1 vs. TrEMBL
Match: A0A267E2T6 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig010779g1 PE=4 SV=1)

HSP 1 Score: 340.502 bits (872), Expect = 2.682e-103
Identity = 213/546 (39.01%), Postives = 316/546 (57.88%), Query Frame = 1

Query:  739 LGSSYSIDVDSNESKKSKLEPST-NTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKNSNIDASVDAANKMNEKHRSIVDEWSSENKSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPLQEDEQFSLHFLDWQAKSVSTVPPQQYPSLSTVPLLQTQVQKPLYSDFLPNNLFYTVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPIVKPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEVKHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
            LGS     ++ N++KK +LE      EPSKV+HIRN+   A E+D+  L VPFG++ +MV AKK NQALLE++    AT+M DYY ++P    GR +I+QYS H  L+ +  N+  + ++ +AN +   ++   DE  S       +LRV++ENL    +   V+ K+F RFG V +I+IF+KN   Q L+++ +S  A  + L LN Q+++N CC L+I+FSK  ++L ++  N+K RD+TV+    D   +    +      +T+ P   P L          Q P+ +  L         PN+    F P+   +P   + S  +    + + I+ P +S N    SI+LVSNL+ EK+  D++FTLFGVYGDV +V I       AL+     SQA+ A ++LN V LFG+ +          AQ     E       K FTN+PLHRFKKP+SKN  NI+PPS +LHLSNIP    EE +  +F D GF   +++ FQK+KKMAL +M ++ED++ ALI LHN++L+ + HLRVSFSK++I
Sbjct:   44 LGSPME-HLEINDAKKVRLENHVPEPEPSKVVHIRNVPQDAIENDIVQLGVPFGQMTNMVLAKKKNQALLEMKTQETATKMVDYYAQHPVTIRGRTVIIQYSNHAELKTEQPNAAAENALSSANGLVSTYQQ--DEPPS-------VLRVIVENLM-APVTIEVLHKIFSRFGMVQKIVIFSKNNTFQALIQMGSSTEALAAKLVLNDQNIYNGCCTLRIDFSK-LNTLNVKFNNEKSRDFTVNRAPGDNPLAYFDPNLAPHLGATLFPAMIPGLEFA-------QAPILAQTLDGQ------PNL--GIF-PAAAQLPAMSMHSLTSPVAPFGQAIMAPQASVN----SILLVSNLDDEKITPDALFTLFGVYGDVQRVKIMYNKKDNALIQFTDASQAQQALQNLNGVRLFGRPLKIAF---SRHAQVALPKEGADAGLTKIFTNSPLHRFKKPHSKNFQNIFPPSQILHLSNIPQEVPEEKIKAIFEDFGFNVVAIKFFQKEKKMALVQMPTVEDSVIALIKLHNYQLSANYHLRVSFSKSVI 554

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BLAST of Polypyrimidine tract-binding protein 1 vs. TrEMBL
Match: G4LZU3 (Polypyrimidine tract binding protein, putative OS=Schistosoma mansoni OX=6183 GN=Smp_138050.2 PE=4 SV=1)

HSP 1 Score: 337.035 bits (863), Expect = 2.069e-101
Identity = 212/588 (36.05%), Postives = 319/588 (54.25%), Query Frame = 1

Query:  754 SIDVDSNESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKNSNIDASVDAANKMNEKHRSIVDEWSSENKSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPLQEDEQFSLHFLDWQAKSV---STVPPQQYPSLS-TVPLLQ-----TQVQKPLYSDFLPNNL-------------------------FYTVMPNVFKSTFQPSPVAI--------PESLLISDCAINPLYQEPIVKPPSSANAIDSSIIL-VSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNT-----ELNSDIEVKHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
            S+D+++ ++KKS+++      PS+V+HIRN+   A E++++L A+PFG +++MV +K+ NQAL+E+    EA ++  +Y +YP   +G+ +I Q+S H  LEL  +N  I  ++  AN++ ++     D   ++      +L VVI+N+    INH+++ K+F RFG +LR++IF +N Q +CL+E  N I A V++L LNGQ+++  CC L++EF K    L+++R+NDKCRDYT+SPL +DE  SL  L     +    ST+     PS+   +PL       T V +   S    N+L                         F  +      S   P+P  +        P + L +      L    I +  S+     +S +L VSNLN E           GVYGDV++V I       ALV      QA TA  HLN  PL+GK +         +A S FN      E N     K +TN+PLHRF+KPNSKN  NIY P+ VLHLSNIP +  EE++  +F   G+  +  +   KDKKMAL ++ +++ AI ALI LHN +LT++SHLR+SFSK  I
Sbjct:   32 SMDLETVDTKKSRVD-RLEASPSRVIHIRNMPGDATENEIALFAIPFGLLKNMVLSKRNNQALIEMHVLEEAVQLVAHYLKYPVTLHGKHLIFQFSTHSHLELISENDAIVNAIKNANRVVQQ-----DLPGAQTGVPNTVLHVVIDNIMGQQINHVILYKIFHRFGTILRVLIFLRNNQYRCLLEFQNHIQAFVAMLLLNGQNIYTGCCSLQVEFWKARGPLEVRRENDKCRDYTISPLTDDELNSLQALPGGVTASTNNSTINSISQPSIGQNIPLGNPTAAFTAVPQAAASGI--NDLAIQLTLLAQQSGLALTPAAAAATASFMALTAQGGNSAINPTPGTVLNAASLQGPRAALPTVQNQTQLLPNLINQSVSNLGQTGASTVLIVSNLNEE-----------GVYGDVTRVKIMFNKKSTALVQFSDPQQALTALYHLNGQPLYGKPLK--------IAVSRFNIVQLPKEDNDVGLTKDYTNSPLHRFRKPNSKNFTNIYAPNHVLHLSNIPSAITEEEVRMIFETKGYHVTDFKFMMKDKKMALIQLENVDMAIQALIDLHNCQLTENSHLRISFSKTAI 592

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BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Cavefish
Match: ptbp2b (polypyrimidine tract-binding protein 2-like [Source:NCBI gene;Acc:103030091])

HSP 1 Score: 299.286 bits (765), Expect = 2.436e-91
Identity = 204/570 (35.79%), Postives = 301/570 (52.81%), Query Frame = 1

Query:  697 GVKRSIQNFNSNSLLGS-SYSIDVDSNESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLK-NSNIDASVDAANKMNEKHRSIVDEWSSE--NKSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPLQEDEQFSLHFLDWQAKSVSTVPPQQYPSLS--TVPLLQTQVQKPLYSDFLPNNLFYTVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPIV-----KPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEVKHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
            GVKRS  +  S SL  S + S+  + ++SKK ++E S ++ PS+V+HIR + +   E+++  L +PFGK+ +++  K  NQA LEL     A  M +YYT   P      + +QYS H  L+     N    A + A + + E      D       + +   +LR++I+N+  Y +   V+ ++F +FG V++II FTKN Q Q L++  + ++A  + L L+GQ+++N CC L+I+FSK  + L ++  NDK RDYT   L           D Q      V P    +LS  +  LL +           P+ +           T   S  A P SL     AI+PL           +   S ++    ++L SNLN E V   S+FTLFGVYGDV +V I      +AL+ M   +QA+ A  HLN   ++GKII   L   + V   +    L+     K FTN+PLHRFKKP SKN  NI+PPS+ LHLSN+     EEDL  LF ++G    + + FQ D+KMAL +M+++E+AI ALI LHN+ +     LRVSFSK+ I
Sbjct:   11 GVKRSSDDLLSGSLYNSPNSSVTANGSDSKKLRVEDSMDSPPSRVIHIRKLPNEVSETEVIALGLPFGKVTNILMLKGKNQAFLELGTEEAAVTMVNYYTAVTPQVRNVPVFIQYSNHKELKTDSALNQRAQAVLQAVSAVQEGGSPSSDTAGDSILSPAPSPVLRIIIDNMF-YPVTLDVLQQIFSKFGTVMKIITFTKNNQFQALLQFSDPVNAQQAKLSLDGQNIYNSCCTLRIDFSKLVN-LNVKYNNDKSRDYTRPELPAG--------DGQPP----VDPSMAAALSKDSTSLLGS-----------PSGMV----------TSYSSAGAYPSSL----GAISPLSAAAAAAAAAGRVALSGHSGGGGVLLASNLNDEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQAQLAMSHLNGQKMYGKIIRVTLSKHQTV--QLPREGLDDQGLTKDFTNSPLHRFKKPGSKNFQNIFPPSATLHLSNVRDDVTEEDLRLLFSNSGGTVKAFKFFQ-DRKMALLQMSTVEEAIQALIDLHNYDMGRGHRLRVSFSKSTI 538

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BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Cavefish
Match: ptbp1b (polypyrimidine tract binding protein 1 [Source:NCBI gene;Acc:103035814])

HSP 1 Score: 294.664 bits (753), Expect = 2.440e-89
Identity = 201/544 (36.95%), Postives = 286/544 (52.57%), Query Frame = 1

Query:  763 VDSNESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKNS----NIDASVDAANKMNEKHRSIVDEWSSENKSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPL-QEDEQFSLHFLDWQAKSVSTVPPQQYPSL-STVPLLQTQVQKPLYSDFLPNNLFYTVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPIVKPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEV-KHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
             + N+SKK K +  +   PS+V+H+R + S   E+++  L +PFGK+ +++  K  NQA LE+     A  M  YY+   P      + +QYS H   ELK  NS       A++ A N +     +I     S       +LRV++ENL  Y +   V+ ++F +FG VL++I FTKN Q Q L++  + ++A  + L L+GQ+++N CC L+I FSK T SL ++  NDK RDYT   L   D Q ++        + +T      P + S  P        P ++      L    MP V      P  +A   SL I   A        +  P  S       ++LVSNLN E+V    +F LFGVYGDV +V I       ALV M   +QA+ A  HLN   L+G+ +   L     V       E + D  + K ++N+PLHRFKKP SKN+ NI+PPSS LHLSNIP S  E+DL  LF  +G    + + FQKD+KMAL +M S+E+AI +LI  HN  L ++ HLRVSFSK+ I
Sbjct:   40 ANGNDSKKFKGDIRSPGIPSRVIHVRKLPSDINEAEVISLGLPFGKVTNLLMLKGKNQAFLEMNTEEAAQTMVSYYSSVTPVIRNHPIFMQYSNHK--ELKTDNSPNQVRAQAALQAVNAVQTGSMAIAGVDPSGVTGPSPVLRVIVENLF-YPVTLDVLHQIFSKFGTVLKVITFTKNNQFQALLQFADGLTAQHAKLALDGQNIYNACCTLRISFSKLT-SLNVKYNNDKSRDYTRPDLPTGDSQPAIEHHAMAGAAFAT------PGIISAAPYAGAHAFPPAFAFQQAAGL---TMPGV------PGALA---SLAIPGAAAAAAAAGRLGFPTLSGG---HCVMLVSNLNPERVTPQCLFILFGVYGDVIRVKIMFNKKENALVQMSDGTQAQLAMSHLNGQKLYGRALRITLSKHTTVQ---LPREGHEDQGLTKDYSNSPLHRFKKPGSKNYSNIFPPSSTLHLSNIPPSVVEDDLKMLFSTSGALVKNFKFFQKDRKMALIQMGSVEEAIESLIEFHNHDLGENHHLRVSFSKSTI 555

[Close]

BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Cavefish
Match: ptbp1b (polypyrimidine tract binding protein 1 [Source:NCBI gene;Acc:103035814])

HSP 1 Score: 294.278 bits (752), Expect = 4.272e-89
Identity = 201/544 (36.95%), Postives = 286/544 (52.57%), Query Frame = 1

Query:  763 VDSNESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKNS----NIDASVDAANKMNEKHRSIVDEWSSENKSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPL-QEDEQFSLHFLDWQAKSVSTVPPQQYPSL-STVPLLQTQVQKPLYSDFLPNNLFYTVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPIVKPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEV-KHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
             + N+SKK K +  +   PS+V+H+R + S   E+++  L +PFGK+ +++  K  NQA LE+     A  M  YY+   P      + +QYS H   ELK  NS       A++ A N +     +I     S       +LRV++ENL  Y +   V+ ++F +FG VL++I FTKN Q Q L++  + ++A  + L L+GQ+++N CC L+I FSK T SL ++  NDK RDYT   L   D Q ++        + +T      P + S  P        P ++      L    MP V      P  +A   SL I   A        +  P  S       ++LVSNLN E+V    +F LFGVYGDV +V I       ALV M   +QA+ A  HLN   L+G+ +   L     V       E + D  + K ++N+PLHRFKKP SKN+ NI+PPSS LHLSNIP S  E+DL  LF  +G    + + FQKD+KMAL +M S+E+AI +LI  HN  L ++ HLRVSFSK+ I
Sbjct:   51 ANGNDSKKFKGDIRSPGIPSRVIHVRKLPSDINEAEVISLGLPFGKVTNLLMLKGKNQAFLEMNTEEAAQTMVSYYSSVTPVIRNHPIFMQYSNHK--ELKTDNSPNQVRAQAALQAVNAVQTGSMAIAGVDPSGVTGPSPVLRVIVENLF-YPVTLDVLHQIFSKFGTVLKVITFTKNNQFQALLQFADGLTAQHAKLALDGQNIYNACCTLRISFSKLT-SLNVKYNNDKSRDYTRPDLPTGDSQPAIEHHAMAGAAFAT------PGIISAAPYAGAHAFPPAFAFQQAAGL---TMPGV------PGALA---SLAIPGAAAAAAAAGRLGFPTLSGG---HCVMLVSNLNPERVTPQCLFILFGVYGDVIRVKIMFNKKENALVQMSDGTQAQLAMSHLNGQKLYGRALRITLSKHTTVQ---LPREGHEDQGLTKDYSNSPLHRFKKPGSKNYSNIFPPSSTLHLSNIPPSVVEDDLKMLFSTSGALVKNFKFFQKDRKMALIQMGSVEEAIESLIEFHNHDLGENHHLRVSFSKSTI 566

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BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Cavefish
Match: ptbp1b (polypyrimidine tract binding protein 1 [Source:NCBI gene;Acc:103035814])

HSP 1 Score: 289.656 bits (740), Expect = 4.398e-88
Identity = 196/542 (36.16%), Postives = 279/542 (51.48%), Query Frame = 1

Query:  763 VDSNESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKNS----NIDASVDAANKMNEKHRSIVDEWSSENKSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPLQEDEQFSLHFLDWQAKSVSTVPPQQYPSLSTVPLLQTQVQKPLYSDFLPNNLFYTVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPIVKPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEV-KHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
             + N+SKK K +  +   PS+V+H+R + S   E+++  L +PFGK+ +++  K  NQA LE+     A  M  YY+   P      + +QYS H   ELK  NS       A++ A N +     +I     S       +LRV++ENL  Y +   V+ ++F +FG VL++I FTKN Q Q L++  + ++A  + L L+GQ+++N CC L+I FSK T SL ++  NDK RDYT   L                          P+  + P ++           +    F   MP V      P  +A   SL I   A        +  P  S       ++LVSNLN E+V    +F LFGVYGDV +V I       ALV M   +QA+ A  HLN   L+G+ +   L     V       E + D  + K ++N+PLHRFKKP SKN+ NI+PPSS LHLSNIP S  E+DL  LF  +G    + + FQKD+KMAL +M S+E+AI +LI  HN  L ++ HLRVSFSK+ I
Sbjct:   11 ANGNDSKKFKGDIRSPGIPSRVIHVRKLPSDINEAEVISLGLPFGKVTNLLMLKGKNQAFLEMNTEEAAQTMVSYYSSVTPVIRNHPIFMQYSNHK--ELKTDNSPNQVRAQAALQAVNAVQTGSMAIAGVDPSGVTGPSPVLRVIVENLF-YPVTLDVLHQIFSKFGTVLKVITFTKNNQFQALLQFADGLTAQHAKLALDGQNIYNACCTLRISFSKLT-SLNVKYNNDKSRDYTRPDL--------------------------PTGDSQPAIEHHA--------MAGAAFGLTMPGV------PGALA---SLAIPGAAAAAAAAGRLGFPTLSGG---HCVMLVSNLNPERVTPQCLFILFGVYGDVIRVKIMFNKKENALVQMSDGTQAQLAMSHLNGQKLYGRALRITLSKHTTVQ---LPREGHEDQGLTKDYSNSPLHRFKKPGSKNYSNIFPPSSTLHLSNIPPSVVEDDLKMLFSTSGALVKNFKFFQKDRKMALIQMGSVEEAIESLIEFHNHDLGENHHLRVSFSKSTI 499

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BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Cavefish
Match: ptbp3 (polypyrimidine tract binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-091116-1])

HSP 1 Score: 227.639 bits (579), Expect = 4.231e-65
Identity = 172/530 (32.45%), Postives = 264/530 (49.81%), Query Frame = 1

Query:  817 PSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKNSNI-DASVDAANKMNEKHRSIVDEWSS---ENKSDRRILRV--VIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHV---SLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPL-QEDEQFSLHFLDWQAKSVSTVPPQQYPSLSTVPLLQTQVQKPLYSDFLPNNLFYTVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPIVKPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEV-KHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
            PS+V+H+R +     E+++  L +PFGK+ +++  K  NQA +E+     A  M +YYT   P    + + +QYS H     +LK  N+ +  V + + ++     ++D+ ++      +  + +R   +I   K Y     + L V           +F  N   +     +  ++ H+   + + L+GQ+++N CC L+IEFSK T SL ++  NDK RD+T   L   D Q +L      A           P + + P        P         L    MP          P+ IP S +    AI+ +        P++ +    S++LVSNLN + ++  S+F LFGVYGDV +V I       ALV M   +QA+ A  HLN   L G++I   +   + V       E   D  + K F+ +PLHRFKKP SKN  NI+PPS+ LHLSNIP S  ++ L  LF   G+   + + FQKD+KMAL ++ S+E+AI ALI LHN  L ++ HLRVSFSK+ I
Sbjct:   22 PSRVVHVRKVPIEVSEAEVISLGIPFGKVTNLLMLKAKNQAFIEMASEEAAITMVNYYTTATPHVRNQPVYIQYSNH----RELKTDNLPNQGVRSPSTLSV--LPVLDQCAAFFYRQAASPKYIRTCGIIVTHKYYKCCSFLYLYVG----------LFGSNYITKTNNSNNKFMAVHLLRLTPITLDGQNIYNACCTLRIEFSKLT-SLNVKYNNDKSRDFTRLDLPSGDGQPTLDPGMTAAFGA--------PGIISSPYAGAAGFAPAVGFPQAAGLSMQAMPGAL------GPLTIPPSAVAGRMAIHGM-------APTALH----SVLLVSNLNPDSISPHSLFILFGVYGDVHRVKILFNKKENALVQMADATQAQLAMSHLNGQRLHGRVIRVTISKHQTVQ---LPREGQEDQGLTKDFSGSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSIADDMLKDLFSSAGYTVKAFKFFQKDRKMALIQLGSVEEAIQALIDLHNHDLGENHHLRVSFSKSTI 506

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BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000006507.1 (pep scaffold:Pmarinus_7.0:GL480554:3468:10153:1 gene:ENSPMAG00000005883.1 transcript:ENSPMAT00000006507.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 134.42 bits (337), Expect = 1.961e-35
Identity = 88/263 (33.46%), Postives = 144/263 (54.75%), Query Frame = 1

Query:  763 VDSNESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKNSNIDASVDAANKMNEKHRSIVDEWSSENKSDRR------ILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPLQEDE-QFSLHFLDWQAKSVS 1530
             + +ESKK K + S++  PSKVLHIR +   A E+++  LA+PFG++ +++  K  +QA LE+     A     +Y+  PP    + + VQYS + S  LK  NS   A+   A +  +   +++    S+++          IL +++ENL  Y I   V+  VF ++G VL+IIIF KN Q Q L++  ++ +AH +   L+GQ+++N CC L++ FS+ T+ L ++  N+K RD T   L   E Q     +  Q K  S
Sbjct:    8 AEGSESKKFKGD-SSDELPSKVLHIRKLPENATEAEVVTLALPFGRVTNILMLKGKSQAFLEMASEEAAVAAVTFYSTDPPVLRNQPVYVQYSTYKS--LKTDNSAYQAARSHARREQKAQAAMMVANGSDSEETNSAAPQSPILHIIVENLL-YPITLEVLHHVFSKYGTVLKIIIFNKNSQYQALMQFADASNAHQAKTMLDGQNIYNGCCTLRVGFSRLTN-LNVKYNNEKSRDLTRPDLPAGEGQGPFPLMRAQGKETS 265

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BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Sea Lamprey
Match: HNRNPLL (heterogeneous nuclear ribonucleoprotein L like [Source:HGNC Symbol;Acc:HGNC:25127])

HSP 1 Score: 119.398 bits (298), Expect = 7.916e-29
Identity = 119/481 (24.74%), Postives = 195/481 (40.54%), Query Frame = 1

Query:  817 PSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKNSNIDASVDAANKMNEKHRSIVDEWSSENKSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTD--SLQIQRQNDKCRDYT-----VSPLQEDEQFSL-----HFLDWQAKSVSTVPPQQYPSLSTVPLLQTQVQKPLYSDFLPNNLFYTVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPIVKPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLP-GEIVAQSIFNTELNSDIEVKHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQ 2220
            PS V+HIR +AS A ES +      FG +R +V      QAL+E E+  +A          P    G+     +S                    + +++ K  +  D+ +  N     IL + + N   Y I   VI  +   +G V RI+IF KN   Q L   D+  SA  +   LNG D+++ CC LKIE++K      L + R + +  DYT     V   Q+ +Q +L       +        T  PQ Y                 ++++   + F    P         +P++ P +     CA       P   P     +  + +++V N+N   +N   +F L  +YG+V K+       G  ++ M   +  + A  +LN   LFG+ +S  +    EIVA   F  E  SD   + F  +  +RF      +   I PPS++LH  + P  F E+  + +  + G +
Sbjct:   10 PSPVVHIRGLASSADESQVMEALQEFGTVRHVVMMPHRRQALVEFERLEDARACVAGTAGDPVYVGGQPAYCNFS-------------------TSQRISRKGGTPADDVARTN----HILLLTVNNAL-YPITTEVIHTICSPYGVVQRIVIFKKN-GVQALRTFDSIPSAQQAKSSLNGADIYSGCCTLKIEYAKERKPARLNVYRNDSETWDYTLEGPCVPNGQQKKQPALLGDHPSTMRGYGNQQGTYCPQNYS----------------FNNYTSGSPFGNARPT--------TPMSGPGT-----CA-------PHNNPCPMGGSAANRVMMVYNMNPSVMNCSRLFNLVCLYGNVEKIKFLKSKPGVGMIQMADAASVDRAVANLNTAQLFGQKLSLSVSKQQEIVAGQAFELEDGSD-SFRDFVGSRHNRFSTHEQASKNRILPPSAILHFYSAPPEFSEQAFIQICEETGVK 428

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BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000008413.1 (pep scaffold:Pmarinus_7.0:GL478562:177533:180128:-1 gene:ENSPMAG00000007617.1 transcript:ENSPMAT00000008413.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 108.612 bits (270), Expect = 9.147e-28
Identity = 65/145 (44.83%), Postives = 85/145 (58.62%), Query Frame = 1

Query: 1951 HLNLVPLFGKIISTYLLPGEIVAQSIFNT----ELNSDIEVKHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
            HLN   ++GK I         V  S + T       SD     F+++PLHRF++  +KN  +I+PPS  LHLSNIP S  E+DL TLF  NG    +L+ F  D KMAL +M SLE+AI  L  LHN +L  +  LRVSFSK++I
Sbjct:   24 HLNGQRMYGKPIR--------VTSSRYQTVQLPRDGSDSLTCDFSDSPLHRFRRMGAKNFHHIFPPSVTLHLSNIPSSVLEDDLKTLFESNGCVVKALKFFATDHKMALVQMESLEEAIQTLAELHNHELEKNRLLRVSFSKSVI 160

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BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000006509.1 (pep scaffold:Pmarinus_7.0:GL480554:3489:6552:1 gene:ENSPMAG00000005883.1 transcript:ENSPMAT00000006509.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 100.908 bits (250), Expect = 2.051e-24
Identity = 66/197 (33.50%), Postives = 108/197 (54.82%), Query Frame = 1

Query:  763 VDSNESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKNSNIDASVDAANKMNEKHRSIV------DEWSSENKSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAH 1335
             + +ESKK K + S++  PSKVLHIR +   A E+++  LA+PFG++ +++  K  +QA LE+     A     +Y+  PP    + + VQYS + S  LK  NS   A+   A +  +   +++       E ++       IL +++ENL  Y I   V+  VF ++G VL+IIIF KN Q Q L++  ++ +AH
Sbjct:    1 AEGSESKKFKGD-SSDELPSKVLHIRKLPENATEAEVVTLALPFGRVTNILMLKGKSQAFLEMASEEAAVAAVTFYSTDPPVLRNQPVYVQYSTYKS--LKTDNSAYQAARSHARREQKAQAAMMVANGSDSEETNSAAPQSPILHIIVENLL-YPITLEVLHHVFSKYGTVLKIIIFNKNSQYQALMQFADASNAH 193

[Close]

BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Sea Lamprey
Match: HNRNPLL (heterogeneous nuclear ribonucleoprotein L like [Source:HGNC Symbol;Acc:HGNC:25127])

HSP 1 Score: 68.5514 bits (166), Expect = 3.108e-12
Identity = 61/223 (27.35%), Postives = 93/223 (41.70%), Query Frame = 1

Query:  817 PSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKNSNIDASVDAANKMNEKHRSIVDEWSSENKSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPLQEDE 1485
            PS V+H+R ++  A ESDL      FG I  +V   K  QAL+E E    +    +Y +       G   +     + +     K S      D                   N++   IL   I N   Y I   V+  +    G V RI+IF KN   Q +   D+  SA  +   LNG D+++ CC LK+E++K T  L + + + +  DYT   L+  +
Sbjct:   47 PSAVVHVRGLSDAALESDLVEAVQHFGPISYVVMMPKKRQALVEFEDLESSRSCVNYSS------TGSIYVCGQPAYFNFSTSQKISRPGGPED-------------------NRNSNHILLFTILN-PIYPITTDVLYTICNPCGPVQRIVIFRKN-GLQAMATFDSVQSAQRAKSSLNGADIYSGCCTLKVEYAKPT-RLNVFKNDSETWDYTNPGLKAGQ 241

HSP 2 Score: 62.3882 bits (150), Expect = 2.600e-10
Identity = 55/210 (26.19%), Postives = 96/210 (45.71%), Query Frame = 1

Query: 1786 IILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIIS------TYLLPGEIVAQSIFNTEL-NSDIEVKHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGF-QCSSLRIF--QKDKKM-ALAKMTSLEDAISALISLHNWKLTDSSH-----LRVSFSKA 2367
            +++V   + E++N D +F +  ++G+V KV       GAA+V M      + A  HLN+  +FGK I+        ++PG+         EL +     K FT +  +RF          I  P++VLH  N P+    E  + L  +    +  S + F  + DK M  L +  +  DA+ AL  +++  L +++      L++ FS A
Sbjct:  316 VLMVYGFDAERINCDRVFNILCLFGNVEKVKFLKSKPGAAMVEMGDPYAVDRAVSHLNMSQIFGKKINLCVSKQQSIVPGQAY-------ELPDGTNSYKDFTGSRNNRFANAEKAAKNRIQQPTTVLHFFNAPMDITAEIFMQLCDEMSIARPLSFKAFSGKSDKSMSGLMEWENKNDAMEALACINHHSLKNANGPYPYTLKLCFSTA 518

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BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Nematostella
Match: EDO43995 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RXA3])

HSP 1 Score: 163.31 bits (412), Expect = 2.944e-43
Identity = 93/205 (45.37%), Postives = 126/205 (61.46%), Query Frame = 1

Query: 1774 IDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKII-------STYLLPGEIVAQSIFNTELNSDIEVKHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKA 2367
            + S ++LVSNLN E ++ D++FTLFG YGDV +V I       ALV      QA+TA  HLN V +FGK +       ++  LP E       +T L  D     + N+PLHRFKKP SKN  NI+PPS  LHLSNIP S  EE+L ++F D G   +  R   KD+KMA   M + E+AI ALI +HN+K++++ HLRVSF+++
Sbjct:  275 MGSPLVLVSNLNEEMISCDALFTLFGCYGDVQRVKILFNKKDTALVQFANVHQAQTAIGHLNGVRVFGKEMKVTNSKHTSVSLPKEGE-----DTNLTKD-----YMNSPLHRFKKPGSKNFQNIFPPSRTLHLSNIPESVTEEELTSMFEDCG-DVADFRFLPKDRKMAHLSMATTEEAIDALIKMHNYKISETHHLRVSFARS 468

HSP 2 Score: 144.436 bits (363), Expect = 9.281e-37
Identity = 79/232 (34.05%), Postives = 130/232 (56.03%), Query Frame = 1

Query:  820 SKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLEL----------KLKNSNIDASVDAANKMNEKHRSIVDEWSSENKSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPLQEDE 1485
            SKVLH+RN+A+ A ++++  L +P+G++ +++  K  NQA LE++    A  + + Y+  PP   GR++ +QYS H  L             L +S++ A + +          I  E  S N     ILR+++EN+  Y I   V+ ++F ++G VL+I+IFT+N Q Q LV+   S  A  +   L+GQ+++N CC L+I++SK   +L ++  NDK RDYT   L   E
Sbjct:    2 SKVLHLRNVAAEATDAEIIALGIPYGRVTNVLMLKGKNQAFLEMKTKENAMALMNSYSYIPPSIRGRQIYIQYSNHQELTTNESQHSPGVRGLSSSHLGAGIGSLT----SGLGIAGELPSVNGC---ILRIIVENML-YPITIEVLNQIFTKYGTVLKIVIFTRNNQFQALVQFSQSTEARAAKCSLDGQNIYNGCCTLRIDYSK-LKTLSVKYNNDKTRDYTRPDLPSGE 224

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BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Nematostella
Match: EDO26232 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7TCJ0])

HSP 1 Score: 117.472 bits (293), Expect = 7.329e-31
Identity = 67/149 (44.97%), Postives = 91/149 (61.07%), Query Frame = 1

Query: 1942 ACRHLNLVPLFGKII-------STYLLPGEIVAQSIFNTELNSDIEVKHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKA 2367
            A  HLN V +FGK +       ++  LP E       +T L  D     + N+PLHRFKKP SKN  NI+PPS  LHLSNIP S  EE+L ++F D G   +  R   KD+KMA   M + E+AI ALI +HN+K++++ HLRVSF+++
Sbjct:    1 AIGHLNGVRVFGKEMKVTNSKHTSVSLPKEGE-----DTNLTKD-----YMNSPLHRFKKPGSKNFQNIFPPSRTLHLSNIPESVTEEELTSMFEDCG-DVADFRFLPKDRKMAHLSMATTEEAIDALIKMHNYKISETHHLRVSFARS 138

[Close]

BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Nematostella
Match: EDO35537 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SLA1])

HSP 1 Score: 100.138 bits (248), Expect = 4.670e-24
Identity = 74/222 (33.33%), Postives = 106/222 (47.75%), Query Frame = 1

Query:  808 NTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELK----LKNSNIDASVDAANKMNEKHRSIVDEWSSENKSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYT 1461
            NT PS+V+H R +A   +E+DL  +  PFG I  +    K  QAL+E E    A  +  Y    P    GR+M V YSK  S E+K    L   +  A  +A+N +                     L  +I  L  + IN  ++ K+    GKVLRI+IF KN           ++SA  +L  LNGQD++  CC LKI++SK    L + + +D+  DYT
Sbjct:    2 NTPPSRVIHCRAVADGCKETDLIQVLQPFGTITYVTLLPKIRQALVEFESLESAIAVVTYSQTSPLTVLGRQMFVNYSK--SQEIKRDKVLNGDSNGACAEASNIL---------------------LLTIINPL--HPINVKILHKICSPSGKVLRIVIFHKNGL--------QALSAERALAVLNGQDIYAGCCTLKIDYSKKAKKLNVFKNDDETWDYT 190

[Close]

BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Nematostella
Match: EDO39119 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SAW4])

HSP 1 Score: 68.5514 bits (166), Expect = 5.126e-12
Identity = 58/221 (26.24%), Postives = 96/221 (43.44%), Query Frame = 1

Query:  811 TEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPC-FNGREMIVQYSKHVSLELKLKNSNIDASVDAANKMNEKHRSIVDEWSSENKSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVE---LDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYT 1461
             EPS+V+H+R +A  A+E DL      +G I  +    K  QAL+E E+ + A  + +      P    GR     YSK   +    +N ++                      SE + ++ +L  +I     Y +   ++  +F + G V RI+IF K+   Q +VE    D   +A  +   LNG D++  C  LKIE       L +++ + +  DYT
Sbjct:   44 AEPSRVVHVRGVADEAREQDLMQCLSQYGNISCITMMPKIRQALVEFEEIACANTLVNQTQMGNPVILCGRPAYANYSKSKQIS---RNVHV---------------------RSETQPNKILLITIIN--PQYVVTTDILHTIFSKQGMVQRIVIFRKS-GLQAMVEESRFDCVEAARHAKETLNGADIYTGCNTLKIESQGYAQQLNVRKNDSETYDYT 237

[Close]

BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Nematostella
Match: EDO35536 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SLA0])

HSP 1 Score: 51.9878 bits (123), Expect = 1.820e-7
Identity = 49/195 (25.13%), Postives = 84/195 (43.08%), Query Frame = 1

Query: 1786 IILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTEL-NSDIEVKHFTNTPLHRFKKPNS---KNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNG----FQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHL 2346
            +++V  LN+EK+N + IF LF +YG+V KV       GA +V M     +E   R+L+   +F   I+        +A S   T L +S     +F +   +RFK  N     +     PP+ +LH  N P +   + L  +    G     + +            L +M  +  A+ ALI  +++ +    +L
Sbjct:    1 MLMVYGLNHEKMNCERIFNLFCLYGNVIKVKFLTNKPGACMVQMSDKIASEMIIRNLSGATIFDNKINIMFSKHPFIADSSVVTALPDSSPSAMNFADNRNNRFKYDNMPFLDSVVGYQPPTRMLHFFNAPPNCTVDQLRDVSTKAGALAPLKGTFFSKANTKSSAGLLEMPDIRSAMEALILTNHYTINPPGNL 195

[Close]

BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Medaka
Match: ptbp1 (polypyrimidine tract binding protein 1 [Source:NCBI gene;Acc:101165926])

HSP 1 Score: 290.426 bits (742), Expect = 1.573e-87
Identity = 204/571 (35.73%), Postives = 301/571 (52.71%), Query Frame = 1

Query:  697 GVKRSIQNFNSNSLLGSSYSID-VDSNESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKNS----NIDASVDAANKMNEKHR---SIVDEWSSENKSDRR--ILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPL-QEDEQFSLHFLDWQAKSVSTVPPQQYPSLSTVPLLQTQVQKPLYSDFLPNNLFYTVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPIVKPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEV-KHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
            G KR      S+ +    Y ++  + N+SKK K +  +   PS+V+H+R + +   E+++  L +PFGK+ +++  K  NQA LE      A  M  YY+   P      + +QYS H   ELK  NS       A++ A N ++       +I  E +S   +  +  +LRV++ENL  Y +   V+ ++F +FG VL+II FTKN Q Q L++  ++++A  + L L+GQ+++N CC L+I FSK T SL ++  NDK RDYT   L   D Q SL   D QA + +   P     +S  P        P ++ F    L    +P+   S      + +  S + +  A     +  +    ++      +++LVSNLN E V    +F LFGVYGDV +V I       ALV M   +QA+ +  HLN   L G+ I   L     V       E + D  + K ++N+PLHRFKKP SKN+ NI+PPS+ LHLSNIP S  E+DL  LF   G    + + FQKD+KMAL +M S+E+AI  LI  HN  L ++ HLRVSFSK+ I
Sbjct:   30 GTKRGSDELFSSCITNGPYIMNSANGNDSKKFKGDVRSPGVPSRVVHVRKLPNDINEAEVISLGLPFGKVTNLLMLKGKNQAFLEFGSEECAQTMVSYYSSVTPVIRNHPIYMQYSTHK--ELKTDNSPNQVRAQAALQAVNALHGSGMGSMAISAEAASMGGAASQSPVLRVIVENLF-YPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALIQYADAMTAQHAKLSLDGQNIYNACCTLRISFSKLT-SLNVKYNNDKSRDYTRPDLPTADSQPSL---DHQAMAAAAFGPG---IISASPYGGAHAFPPTFT-FQQAGLSMQGIPSALAS------LGVGHSGMAAAAAAAAATRLGLSGLGATGG---HNVLLVSNLNPESVTPHCLFILFGVYGDVMRVKILFNKKENALVQMSDGTQAQLSMSHLNGQRLHGRAIRVTLSKHTTVQ---LPREGHEDQGLTKDYSNSPLHRFKKPGSKNYSNIFPPSATLHLSNIPPSVMEDDLRRLFASTGATVKAFKFFQKDRKMALIQMGSVEEAIECLIEFHNHDLGENHHLRVSFSKSTI 577

[Close]

BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Medaka
Match: ptbp1 (polypyrimidine tract binding protein 1 [Source:NCBI gene;Acc:101165926])

HSP 1 Score: 288.115 bits (736), Expect = 3.002e-87
Identity = 199/548 (36.31%), Postives = 292/548 (53.28%), Query Frame = 1

Query:  763 VDSNESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKNS----NIDASVDAANKMNEKHR---SIVDEWSSENKSDRR--ILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPL-QEDEQFSLHFLDWQAKSVSTVPPQQYPSLSTVPLLQTQVQKPLYSDFLPNNLFYTVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPIVKPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEV-KHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
             + N+SKK K +  +   PS+V+H+R + +   E+++  L +PFGK+ +++  K  NQA LE      A  M  YY+   P      + +QYS H   ELK  NS       A++ A N ++       +I  E +S   +  +  +LRV++ENL  Y +   V+ ++F +FG VL+II FTKN Q Q L++  ++++A  + L L+GQ+++N CC L+I FSK T SL ++  NDK RDYT   L   D Q SL   D QA + +   P     +S  P        P ++ F    L    +P+   S      + +  S + +  A     +  +    ++      +++LVSNLN E V    +F LFGVYGDV +V I       ALV M   +QA+ +  HLN   L G+ I   L     V       E + D  + K ++N+PLHRFKKP SKN+ NI+PPS+ LHLSNIP S  E+DL  LF   G    + + FQKD+KMAL +M S+E+AI  LI  HN  L ++ HLRVSFSK+ I
Sbjct:    4 ANGNDSKKFKGDVRSPGVPSRVVHVRKLPNDINEAEVISLGLPFGKVTNLLMLKGKNQAFLEFGSEECAQTMVSYYSSVTPVIRNHPIYMQYSTHK--ELKTDNSPNQVRAQAALQAVNALHGSGMGSMAISAEAASMGGAASQSPVLRVIVENLF-YPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALIQYADAMTAQHAKLSLDGQNIYNACCTLRISFSKLT-SLNVKYNNDKSRDYTRPDLPTADSQPSL---DHQAMAAAAFGPG---IISASPYGGAHAFPPTFT-FQQAGLSMQGIPSALAS------LGVGHSGMAAAAAAAAATRLGLSGLGATGG---HNVLLVSNLNPESVTPHCLFILFGVYGDVMRVKILFNKKENALVQMSDGTQAQLSMSHLNGQRLHGRAIRVTLSKHTTVQ---LPREGHEDQGLTKDYSNSPLHRFKKPGSKNYSNIFPPSATLHLSNIPPSVMEDDLRRLFASTGATVKAFKFFQKDRKMALIQMGSVEEAIECLIEFHNHDLGENHHLRVSFSKSTI 528

[Close]

BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Medaka
Match: PTBP2 (polypyrimidine tract binding protein 2 [Source:NCBI gene;Acc:101156726])

HSP 1 Score: 285.419 bits (729), Expect = 2.111e-86
Identity = 193/570 (33.86%), Postives = 288/570 (50.53%), Query Frame = 1

Query:  697 GVKRSIQNF----NSNSLLGSSYSIDVDSNESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKNSNIDASVDAANKMNEKHRSIVDEWSSENKSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPLQEDEQFSLHFLDWQAKSVSTVPPQQYPSLSTVPLLQTQVQKPLYSDFLPNNLFYTVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPI-------VKPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEVKHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
            G+KR         NSNS L +        ++SKK ++E +    PS+V+HIR + + A ++++  L +PFGK+ +++  +  NQA LE+     A  M +YY   PP      + VQ+S H  L+    +    A + A + +      + D  ++ +     +LR++I+N+  Y +   V+ ++F +FG V++II FTKN Q Q L++  + + A  + L L+GQ+++N CC L+I+FSK  + L ++  NDK RDY+   L                          P+  + P L   V   L  D  P       +P                       A+NPL            V  P  A +    ++L SNLN E V   S+FTLFGVYGDV +V I      +AL+ M   SQA+ A  HLN   ++GKII   L   + VA  +    L+     K FTN+ LHRFKKP SKN  NI+PPS+ LHLSN+     EEDL  LF + G    + + FQ D+KMAL +M+++E+AI ALI LHN+ +  + HLRVSFSK+ I
Sbjct:   10 GMKRGSDELSMYNNSNSDLSTRSDGASTGSDSKKLRVEEAL---PSRVIHIRRLPTEAMDAEVIALGLPFGKVTNILTLRGKNQAFLEMGTEEAAITMVNYYNTVPPHVRNSPVYVQFSNHKELKTDAASQRTQAVLQAVSAVQPPGSEVQDVLAAASSP---VLRIIIDNMF-YPVTLDVLQQIFSKFGTVMKIITFTKNNQFQALLQYSDPVQAQHAKLALDGQNIYNSCCTLRIDFSKLVN-LNVKYNNDKSRDYSRPEL--------------------------PAGDSRPTLDPSVAAALSKDSTP---LLCKIPG----------------------ALNPLSAAAAAAAAAGRVALPGQAGS--GGVLLASNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMCDPSQAQLAMSHLNGQKMYGKIIRVTLSKHQSVA--LPRDGLDDQGLTKDFTNSSLHRFKKPGSKNFQNIFPPSATLHLSNVLQDVTEEDLRLLFSNTGGTVKAFKFFQ-DRKMALIQMSTVEEAIQALIDLHNYNMGANQHLRVSFSKSTI 515

[Close]

BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Medaka
Match: ENSORLT00000042697.1 (polypyrimidine tract-binding protein 1 [Source:NCBI gene;Acc:101170752])

HSP 1 Score: 284.648 bits (727), Expect = 4.466e-86
Identity = 200/548 (36.50%), Postives = 286/548 (52.19%), Query Frame = 1

Query:  763 VDSNESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKNS-NIDASVDAANKMNEKH---RSIVDEWSSENKSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPLQEDEQFSLHFLDWQAKSVSTVPPQQYPSLSTVPLLQTQVQKPLYSDFLPNNLFYTVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPIVKPPSSAN----AIDS--SIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEV-KHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
             + N+SKK K +      PS+VLHIR +     E+++  L +PFG + +++  K  NQA LE+     A  M  YY+   P    + + VQ+S H   ELK  NS N + +  A   ++  H    ++V   SS       +LRVV+ENL  Y ++   + ++F +FG VLRII+FTKN Q Q L++     SA  + + L+GQ+++N CC L+I FSK T +L ++  NDK RD+T   L                          PS    P ++ Q     +   + +   YT   + F   F   PV+ P + L        L    +   P+ A     AI +  S++LVSNLN E+V    +F LFGVYGDV +V I       ALV M  ++QA+ A  HLN   L G+ +   L     V       E + D  + K ++++PLHRFKKP SKN+ NI+PPS+ LHLSNIP S  E+DL  LF  +G    + + FQKD KMAL +M S+E+AI  LI LHN  L ++ HLRVSFSK+ I
Sbjct:    5 ANGNDSKKFKGDLRGPNVPSRVLHIRKLPIDITETEVISLGLPFGDVTNLLMLKAKNQAFLEMNSEEAAQNMVGYYSTVMPIIRQQPVFVQFSNHK--ELKTDNSPNQERAQAALRALSSSHVDTAALVVAPSS-------VLRVVVENLL-YPVSLDALCQIFSKFGTVLRIIVFTKNNQFQALLQYAEGASAQAAKVSLDGQNIYNGCCTLRISFSKLT-TLNVKYNNDKSRDFTRPDL--------------------------PSGDGQPTMEHQAMATAFGPGIISASPYTGATHAFPPAFALQPVSSPYAGLTMSGLPGTLASLTL---PAGARLGFPAIPAGHSVVLVSNLNAERVTPHCLFILFGVYGDVMRVKILFNKKENALVQMSDSTQAQLAMSHLNGQRLHGRPLRITLSKHTSVQ---LPREGHEDQGLTKDYSSSPLHRFKKPGSKNYSNIFPPSATLHLSNIPPSVVEDDLKMLFSSSGAVVKAFKFFQKDHKMALIQMGSVEEAIECLIQLHNHDLGENHHLRVSFSKSSI 509

[Close]

BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Medaka
Match: ENSORLT00000036879.1 (polypyrimidine tract-binding protein 1 [Source:NCBI gene;Acc:101170752])

HSP 1 Score: 284.263 bits (726), Expect = 2.338e-85
Identity = 200/548 (36.50%), Postives = 286/548 (52.19%), Query Frame = 1

Query:  763 VDSNESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKNS-NIDASVDAANKMNEKH---RSIVDEWSSENKSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPLQEDEQFSLHFLDWQAKSVSTVPPQQYPSLSTVPLLQTQVQKPLYSDFLPNNLFYTVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPIVKPPSSAN----AIDS--SIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEV-KHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
             + N+SKK K +      PS+VLHIR +     E+++  L +PFG + +++  K  NQA LE+     A  M  YY+   P    + + VQ+S H   ELK  NS N + +  A   ++  H    ++V   SS       +LRVV+ENL  Y ++   + ++F +FG VLRII+FTKN Q Q L++     SA  + + L+GQ+++N CC L+I FSK T +L ++  NDK RD+T   L                          PS    P ++ Q     +   + +   YT   + F   F   PV+ P + L        L    +   P+ A     AI +  S++LVSNLN E+V    +F LFGVYGDV +V I       ALV M  ++QA+ A  HLN   L G+ +   L     V       E + D  + K ++++PLHRFKKP SKN+ NI+PPS+ LHLSNIP S  E+DL  LF  +G    + + FQKD KMAL +M S+E+AI  LI LHN  L ++ HLRVSFSK+ I
Sbjct:   58 ANGNDSKKFKGDLRGPNVPSRVLHIRKLPIDITETEVISLGLPFGDVTNLLMLKAKNQAFLEMNSEEAAQNMVGYYSTVMPIIRQQPVFVQFSNHK--ELKTDNSPNQERAQAALRALSSSHVDTAALVVAPSS-------VLRVVVENLL-YPVSLDALCQIFSKFGTVLRIIVFTKNNQFQALLQYAEGASAQAAKVSLDGQNIYNGCCTLRISFSKLT-TLNVKYNNDKSRDFTRPDL--------------------------PSGDGQPTMEHQAMATAFGPGIISASPYTGATHAFPPAFALQPVSSPYAGLTMSGLPGTLASLTL---PAGARLGFPAIPAGHSVVLVSNLNAERVTPHCLFILFGVYGDVMRVKILFNKKENALVQMSDSTQAQLAMSHLNGQRLHGRPLRITLSKHTSVQ---LPREGHEDQGLTKDYSSSPLHRFKKPGSKNYSNIFPPSATLHLSNIPPSVVEDDLKMLFSSSGAVVKAFKFFQKDHKMALIQMGSVEEAIECLIQLHNHDLGENHHLRVSFSKSSI 562

[Close]

BLAST of Polypyrimidine tract-binding protein 1 vs. Planmine SMEST
Match: SMESG000033951.1 (SMESG000033951.1)

HSP 1 Score: 1283.09 bits (3319), Expect = 0.000e+0
Identity = 642/642 (100.00%), Postives = 642/642 (100.00%), Query Frame = 1

Query:  448 MTFPQFDPRFXXXXXXXXXXXXXXXXGSFTDPVHCGVLNSLANNQQAMLDAQSLMVFPYFLNFPCNMPYTNPHFISNGQNTISGVKRSIQNFNSNSLLGSSYSIDVDSNESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKNSNIDASVDAANKMNEKHRSIVDEWSSENKSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPLQEDEQFSLHFLDWQAKSVSTVPPQQYPSLSTVPLLQTQVQKPLYSDFLPNNLFYTVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPIVKPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEVKHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
            MTFPQFDPRFSDISSLISLVSSASVDGSFTDPVHCGVLNSLANNQQAMLDAQSLMVFPYFLNFPCNMPYTNPHFISNGQNTISGVKRSIQNFNSNSLLGSSYSIDVDSNESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKNSNIDASVDAANKMNEKHRSIVDEWSSENKSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPLQEDEQFSLHFLDWQAKSVSTVPPQQYPSLSTVPLLQTQVQKPLYSDFLPNNLFYTVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPIVKPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEVKHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI
Sbjct:    1 MTFPQFDPRFSDISSLISLVSSASVDGSFTDPVHCGVLNSLANNQQAMLDAQSLMVFPYFLNFPCNMPYTNPHFISNGQNTISGVKRSIQNFNSNSLLGSSYSIDVDSNESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKNSNIDASVDAANKMNEKHRSIVDEWSSENKSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPLQEDEQFSLHFLDWQAKSVSTVPPQQYPSLSTVPLLQTQVQKPLYSDFLPNNLFYTVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPIVKPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEVKHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 642

[Close]

BLAST of Polypyrimidine tract-binding protein 1 vs. Planmine SMEST
Match: SMESG000033951.1 (SMESG000033951.1)

HSP 1 Score: 1273.84 bits (3295), Expect = 0.000e+0
Identity = 640/642 (99.69%), Postives = 640/642 (99.69%), Query Frame = 1

Query:  448 MTFPQFDPRFXXXXXXXXXXXXXXXXGSFTDPVHCGVLNSLANNQQAMLDAQSLMVFPYFLNFPCNMPYTNPHFISNGQNTISGVKRSIQNFNSNSLLGSSYSIDVDSNESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKNSNIDASVDAANKMNEKHRSIVDEWSSENKSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPLQEDEQFSLHFLDWQAKSVSTVPPQQYPSLSTVPLLQTQVQKPLYSDFLPNNLFYTVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPIVKPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEVKHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 2373
            MTFPQFDPRFSDISSLISLVSSASVDGSFTDPVHCGVLNSLANNQQAMLDAQSLMVFPYFLNFPCNMPYTNPHFISNGQNTISG  RSIQNFNSNSLLGSSYSIDVDSNESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKNSNIDASVDAANKMNEKHRSIVDEWSSENKSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPLQEDEQFSLHFLDWQAKSVSTVPPQQYPSLSTVPLLQTQVQKPLYSDFLPNNLFYTVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPIVKPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEVKHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI
Sbjct:    1 MTFPQFDPRFSDISSLISLVSSASVDGSFTDPVHCGVLNSLANNQQAMLDAQSLMVFPYFLNFPCNMPYTNPHFISNGQNTISG--RSIQNFNSNSLLGSSYSIDVDSNESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKNSNIDASVDAANKMNEKHRSIVDEWSSENKSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPLQEDEQFSLHFLDWQAKSVSTVPPQQYPSLSTVPLLQTQVQKPLYSDFLPNNLFYTVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPIVKPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEVKHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI 640

[Close]

BLAST of Polypyrimidine tract-binding protein 1 vs. Planmine SMEST
Match: SMESG000018057.1 (SMESG000018057.1)

HSP 1 Score: 364.77 bits (935), Expect = 3.173e-116
Identity = 208/540 (38.52%), Postives = 313/540 (57.96%), Query Frame = 1

Query:  772 NESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKNSNIDASVDAANKMNEKHRSIVDEWSSENKSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPLQEDE-------QFSL-HFLDWQAKSVSTVPPQQYPSLSTVPLLQTQVQKPLYSDFLPNNLFYTVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPIVKPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEVKHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKA 2367
            N  KK K+E   + +PS+V+HIRN+     ++ +++LAVPFG I ++V+ +K NQAL+++ + +EA  M DY+ +Y P   G+ + +Q+SKH  L+L+  NSNID  V +AN   EK +  +  W++       ILR++I+N  N  INHLV  K+F RFG+++RI+ FTKN Q   LVE  +++S+HV+ L LNG +L  DC  ++I+FSKN   LQ+QRQ+DK RDY  SPL   E       Q+S   F   ++ S++    QQ+ S  T  L     Q  +  +  P             +               S+ + N ++       P+S     +S++LV+NLN EK N D++FTLFGVYGDV +V +       ALV    + QA TA R+L+   L+GK +  ++    ++   +   + N  +  K ++N+ LHRFKKPNSKN+ NI+PPS+V+HLSNIP +  E DL  +    G++    +    DKKMAL ++ S+EDAI  LI  HN KL++ +HLR+SFSKA
Sbjct:   11 NSHKKVKMEQGIDEKPSRVIHIRNVPQEVDDTSVAMLAVPFGYIDNIVFVRKNNQALIQMRELNEAIEMADYFNQYVPLMYGKHLFIQFSKHQQLDLRNNNSNIDKLVQSAN---EKRKHYLINWANNTGGASEILRILIDNAPNLIINHLVFYKIFSRFGQIIRIVSFTKNNQHHGLVEFASTLSSHVAQLQLNGANLLGDCGTMRIDFSKNPGPLQVQRQSDKVRDYMESPLNRTELQELEGPQYSFPLFAVGRSMSMARGNDQQFMSNITAQLSAMASQTGV--ELTPAAAMAAASLMAACNQMNHRTADQSNWGFGSNQSQNAMFN------PNSGIENGNSVVLVTNLNAEKSNPDALFTLFGVYGDVMRVKVMFNKKNTALVQFANHQQAMTAIRNLDACFLWGKQMHLHVSKTNVIQLPM--EDANHGL-TKDYSNSTLHRFKKPNSKNYQNIFPPSAVVHLSNIPPTTSEGDLSDMIRIAGYEVKKFKFLPNDKKMALLELNSVEDAIHVLIEFHNRKLSEKNHLRISFSKA 536

[Close]

BLAST of Polypyrimidine tract-binding protein 1 vs. Planmine SMEST
Match: SMESG000018057.1 (SMESG000018057.1)

HSP 1 Score: 362.459 bits (929), Expect = 4.563e-115
Identity = 207/541 (38.26%), Postives = 313/541 (57.86%), Query Frame = 1

Query:  772 NESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKNSNIDASVDAANKMNEKHRSIVDEWSSENKSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPLQEDE-------QFSL-HFLDWQAKSVSTVPPQQYPSLSTVPLL-QTQVQKPLYSDFLPNNLFYTVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPIVKPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEVKHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKA 2367
            N  KK K+E   + +PS+V+HIRN+     ++ +++LAVPFG I ++V+ +K NQAL+++ + +EA  M DY+ +Y P   G+ + +Q+SKH  L+L+  NSNID  V +AN   EK +  +  W++       ILR++I+N  N  INHLV  K+F RFG+++RI+ FTKN Q   LVE  +++S+HV+ L LNG +L  DC  ++I+FSKN   LQ+QRQ+DK RDY  SPL   E       Q+S   F   ++ S++    QQ+ +     +  QT V      +  P             +               S+ + N ++       P+S     +S++LV+NLN EK N D++FTLFGVYGDV +V +       ALV    + QA TA R+L+   L+GK +  ++    ++   +   + N  +  K ++N+ LHRFKKPNSKN+ NI+PPS+V+HLSNIP +  E DL  +    G++    +    DKKMAL ++ S+EDAI  LI  HN KL++ +HLR+SFSKA
Sbjct:   32 NSHKKVKMEQGIDEKPSRVIHIRNVPQEVDDTSVAMLAVPFGYIDNIVFVRKNNQALIQMRELNEAIEMADYFNQYVPLMYGKHLFIQFSKHQQLDLRNNNSNIDKLVQSAN---EKRKHYLINWANNTGGASEILRILIDNAPNLIINHLVFYKIFSRFGQIIRIVSFTKNNQHHGLVEFASTLSSHVAQLQLNGANLLGDCGTMRIDFSKNPGPLQVQRQSDKVRDYMESPLNRTELQELEGPQYSFPLFAVGRSMSMARGNDQQFMTAQLSAMASQTGV------ELTPAAAMAAASLMAACNQMNHRTADQSNWGFGSNQSQNAMFN------PNSGIENGNSVVLVTNLNAEKSNPDALFTLFGVYGDVMRVKVMFNKKNTALVQFANHQQAMTAIRNLDACFLWGKQMHLHVSKTNVIQLPM--EDANHGL-TKDYSNSTLHRFKKPNSKNYQNIFPPSAVVHLSNIPPTTSEGDLSDMIRIAGYEVKKFKFLPNDKKMALLELNSVEDAIHVLIEFHNRKLSEKNHLRISFSKA 554

[Close]

BLAST of Polypyrimidine tract-binding protein 1 vs. Planmine SMEST
Match: SMESG000018057.1 (SMESG000018057.1)

HSP 1 Score: 362.073 bits (928), Expect = 6.605e-115
Identity = 207/541 (38.26%), Postives = 313/541 (57.86%), Query Frame = 1

Query:  772 NESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFGKIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKHVSLELKLKNSNIDASVDAANKMNEKHRSIVDEWSSENKSDRRILRVVIENLKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLLHLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPLQEDE-------QFSL-HFLDWQAKSVSTVPPQQYPSLSTVPLL-QTQVQKPLYSDFLPNNLFYTVMPNVFKSTFQPSPVAIPESLLISDCAINPLYQEPIVKPPSSANAIDSSIILVSNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETACRHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEVKHFTNTPLHRFKKPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQKDKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKA 2367
            N  KK K+E   + +PS+V+HIRN+     ++ +++LAVPFG I ++V+ +K NQAL+++ + +EA  M DY+ +Y P   G+ + +Q+SKH  L+L+  NSNID  V +AN   EK +  +  W++       ILR++I+N  N  INHLV  K+F RFG+++RI+ FTKN Q   LVE  +++S+HV+ L LNG +L  DC  ++I+FSKN   LQ+QRQ+DK RDY  SPL   E       Q+S   F   ++ S++    QQ+ +     +  QT V      +  P             +               S+ + N ++       P+S     +S++LV+NLN EK N D++FTLFGVYGDV +V +       ALV    + QA TA R+L+   L+GK +  ++    ++   +   + N  +  K ++N+ LHRFKKPNSKN+ NI+PPS+V+HLSNIP +  E DL  +    G++    +    DKKMAL ++ S+EDAI  LI  HN KL++ +HLR+SFSKA
Sbjct:   37 NSHKKVKMEQGIDEKPSRVIHIRNVPQEVDDTSVAMLAVPFGYIDNIVFVRKNNQALIQMRELNEAIEMADYFNQYVPLMYGKHLFIQFSKHQQLDLRNNNSNIDKLVQSAN---EKRKHYLINWANNTGGASEILRILIDNAPNLIINHLVFYKIFSRFGQIIRIVSFTKNNQHHGLVEFASTLSSHVAQLQLNGANLLGDCGTMRIDFSKNPGPLQVQRQSDKVRDYMESPLNRTELQELEGPQYSFPLFAVGRSMSMARGNDQQFMTAQLSAMASQTGV------ELTPAAAMAAASLMAACNQMNHRTADQSNWGFGSNQSQNAMFN------PNSGIENGNSVVLVTNLNAEKSNPDALFTLFGVYGDVMRVKVMFNKKNTALVQFANHQQAMTAIRNLDACFLWGKQMHLHVSKTNVIQLPM--EDANHGL-TKDYSNSTLHRFKKPNSKNYQNIFPPSAVVHLSNIPPTTSEGDLSDMIRIAGYEVKKFKFLPNDKKMALLELNSVEDAIHVLIEFHNRKLSEKNHLRISFSKA 559

The following BLAST results are available for this feature:

BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Human
BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Celegans
BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Fly
BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Zebrafish
BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Xenopus
BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Mouse
BLAST of Polypyrimidine tract-binding protein 1 vs. UniProt/SwissProt
BLAST of Polypyrimidine tract-binding protein 1 vs. TrEMBL
BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Cavefish
BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Sea Lamprey
BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Yeast
BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Nematostella
BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Medaka
BLAST of Polypyrimidine tract-binding protein 1 vs. Planmine SMEST

BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
PTBP2	2.837e-97	36.03	polypyrimidine tract binding protein 2 [Source:HGN...	[more]
PTBP2	2.544e-96	36.03	polypyrimidine tract binding protein 2 [Source:HGN...	[more]
PTBP2	3.025e-95	36.03	polypyrimidine tract binding protein 2 [Source:HGN...	[more]
PTBP2	2.880e-94	36.03	polypyrimidine tract binding protein 2 [Source:HGN...	[more]
PTBP3	6.302e-86	34.49	polypyrimidine tract binding protein 3 [Source:HGN...	[more]

BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ptb-1	1.341e-41	42.86	PTB (HnRNP) homolog; Putative RNA-binding protein ...	[more]
ptb-1	1.341e-41	42.86	PTB (HnRNP) homolog; Putative RNA-binding protein ...	[more]
ptb-1	1.349e-40	42.86	PTB (HnRNP) homolog; Putative RNA-binding protein ...	[more]
hrpl-1	2.598e-18	23.06	Heterogeneous nuclear RibonucleoProtein (HnRNP) L ...	[more]
hrpl-1	5.494e-18	21.69	Heterogeneous nuclear RibonucleoProtein (HnRNP) L ...	[more]

BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5


Match Name	E-value	Identity	Description
heph	3.647e-84	32.68	gene:FBgn0011224 transcript:FBtr0346192	[more]
heph	5.017e-84	34.38	gene:FBgn0011224 transcript:FBtr0112865	[more]
heph	9.881e-84	34.38	gene:FBgn0011224 transcript:FBtr0300268	[more]
heph	9.881e-84	34.38	gene:FBgn0011224 transcript:FBtr0300269	[more]
heph	9.881e-84	34.38	gene:FBgn0011224 transcript:FBtr0300267	[more]

BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ptbp2b	2.817e-92	36.14	polypyrimidine tract binding protein 2b [Source:ZF...	[more]
ptbp3	4.173e-91	35.38	polypyrimidine tract binding protein 3 [Source:ZFI...	[more]
ptbp3	4.173e-91	35.38	polypyrimidine tract binding protein 3 [Source:ZFI...	[more]
ptbp3	1.807e-90	35.40	polypyrimidine tract binding protein 3 [Source:ZFI...	[more]
ptbp1b	3.577e-89	35.78	polypyrimidine tract binding protein 1b [Source:ZF...	[more]

BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ptbp1	1.394e-86	36.07	polypyrimidine tract binding protein 1 [Source:NCB...	[more]
taco1	1.737e-86	36.26	translational activator of mitochondrially encoded...	[more]
taco1	1.919e-86	36.13	translational activator of mitochondrially encoded...	[more]
taco1	2.938e-86	36.26	translational activator of mitochondrially encoded...	[more]
taco1	4.702e-86	36.50	translational activator of mitochondrially encoded...	[more]

BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Ptbp2	1.859e-97	36.03	polypyrimidine tract binding protein 2 [Source:MGI...	[more]
Ptbp2	2.772e-95	36.03	polypyrimidine tract binding protein 2 [Source:MGI...	[more]
Ptbp3	2.265e-85	34.60	polypyrimidine tract binding protein 3 [Source:MGI...	[more]
Ptbp3	2.406e-85	34.76	polypyrimidine tract binding protein 3 [Source:MGI...	[more]
Ptbp3	6.139e-85	35.04	polypyrimidine tract binding protein 3 [Source:MGI...	[more]

BLAST of Polypyrimidine tract-binding protein 1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q66H20\|PTBP2_RAT	1.939e-94	36.03	Polypyrimidine tract-binding protein 2 OS=Rattus n...	[more]
sp\|Q91Z31\|PTBP2_MOUSE	1.939e-94	36.03	Polypyrimidine tract-binding protein 2 OS=Mus musc...	[more]
sp\|Q9UKA9\|PTBP2_HUMAN	1.383e-93	36.03	Polypyrimidine tract-binding protein 2 OS=Homo sap...	[more]
sp\|Q29099\|PTBP1_PIG	2.077e-85	35.71	Polypyrimidine tract-binding protein 1 OS=Sus scro...	[more]
sp\|O95758\|PTBP3_HUMAN	3.026e-85	34.49	Polypyrimidine tract-binding protein 3 OS=Homo sap...	[more]

BLAST of Polypyrimidine tract-binding protein 1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A3Q0KMW9	1.650e-109	37.24	Polypyrimidine tract binding protein, putative OS=...	[more]
A0A183QYD0	1.962e-109	37.16	Uncharacterized protein OS=Schistosoma rodhaini OX...	[more]
A0A267FSF7	3.833e-105	39.38	Uncharacterized protein OS=Macrostomum lignano OX=...	[more]
A0A267E2T6	2.682e-103	39.01	Uncharacterized protein OS=Macrostomum lignano OX=...	[more]
G4LZU3	2.069e-101	36.05	Polypyrimidine tract binding protein, putative OS=...	[more]

BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ptbp2b	2.436e-91	35.79	polypyrimidine tract-binding protein 2-like [Sourc...	[more]
ptbp1b	2.440e-89	36.95	polypyrimidine tract binding protein 1 [Source:NCB...	[more]
ptbp1b	4.272e-89	36.95	polypyrimidine tract binding protein 1 [Source:NCB...	[more]
ptbp1b	4.398e-88	36.16	polypyrimidine tract binding protein 1 [Source:NCB...	[more]
ptbp3	4.231e-65	32.45	polypyrimidine tract binding protein 3 [Source:ZFI...	[more]

BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ENSPMAT00000006507.1	1.961e-35	33.46	pep scaffold:Pmarinus_7.0:GL480554:3468:10153:1 ge...	[more]
HNRNPLL	7.916e-29	24.74	heterogeneous nuclear ribonucleoprotein L like [So...	[more]
ENSPMAT00000008413.1	9.147e-28	44.83	pep scaffold:Pmarinus_7.0:GL478562:177533:180128:-...	[more]
ENSPMAT00000006509.1	2.051e-24	33.50	pep scaffold:Pmarinus_7.0:GL480554:3489:6552:1 gen...	[more]
HNRNPLL	3.108e-12	27.35	heterogeneous nuclear ribonucleoprotein L like [So...	[more]

BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5


Match Name	E-value	Identity	Description
EDO43995	2.944e-43	45.37	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO26232	7.329e-31	44.97	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO35537	4.670e-24	33.33	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO39119	5.126e-12	26.24	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO35536	1.820e-7	25.13	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of Polypyrimidine tract-binding protein 1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ptbp1	1.573e-87	35.73	polypyrimidine tract binding protein 1 [Source:NCB...	[more]
ptbp1	3.002e-87	36.31	polypyrimidine tract binding protein 1 [Source:NCB...	[more]
PTBP2	2.111e-86	33.86	polypyrimidine tract binding protein 2 [Source:NCB...	[more]
ENSORLT00000042697.1	4.466e-86	36.50	polypyrimidine tract-binding protein 1 [Source:NCB...	[more]
ENSORLT00000036879.1	2.338e-85	36.50	polypyrimidine tract-binding protein 1 [Source:NCB...	[more]

BLAST of Polypyrimidine tract-binding protein 1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000033951.1	0.000e+0	100.00	SMESG000033951.1	[more]
SMESG000033951.1	0.000e+0	99.69	SMESG000033951.1	[more]
SMESG000018057.1	3.173e-116	38.52	SMESG000018057.1	[more]
SMESG000018057.1	4.563e-115	38.26	SMESG000018057.1	[more]
SMESG000018057.1	6.605e-115	38.26	SMESG000018057.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30009115 ID=SMED30009115|Name=Polypyrimidine tract-binding protein 1|organism=Schmidtea mediterranea sexual|type=transcript|length=2583bp
CTAGAAATAGTTAATATGAATCTGTCATATTCTATCAAATACAATTGAGT
GTCACTAAAACAATCGTATTATTTGTGCAAATAGTACTCAAATTGTATAA
TTTAAATTTGTAATGATCAGTACCTATTTGTTATGAGTATGTCAACTTAA
ACGTGTTCACATCGAAATATTTACTCAGAAAGATACAGTGGCTCTGCATA
TTTTCAACATTTTCTCATAACTATCAATCCACTAACAAAATTGACACATC
TGAGCATAAACCAATAAACCTCGCTCCAGTTATCATTGATTAACTATAAA
AGAAGCAATTTGACAGTTCTCTTTACAAACTCAGTTGTGAAAGTATTAAA
ATTATTTACTAAATTTATGATTGGCATATTTTTCTCTCACTGTTGATAGC
AGCCGTACAAATTTTATTGTGTATAACTTTTTTTTCATCAAAAAAGAATG
ACTTTTCCGCAATTTGATCCAAGATTTTCCGATATCTCGTCACTAATAAG
TCTTGTATCGAGCGCGTCTGTCGATGGATCATTTACTGATCCGGTTCATT
GTGGAGTTTTAAATTCTCTCGCAAATAATCAACAGGCTATGCTTGATGCT
CAATCTTTGATGGTTTTTCCATATTTTTTAAATTTTCCTTGTAACATGCC
GTATACAAATCCTCATTTCATTTCCAATGGACAAAACACAATAAGTGGAG
TAAAGAGATCCATTCAAAACTTTAATTCAAACTCTTTGTTAGGCTCAAGT
TACAGCATTGATGTTGATTCAAATGAATCAAAAAAGTCGAAATTGGAGCC
TAGCACCAATACTGAACCGTCGAAAGTGCTCCATATTAGAAATATAGCAT
CAAGAGCACAGGAATCCGATCTTAGTTTGCTGGCAGTGCCATTTGGGAAA
ATTAGATCTATGGTTTATGCCAAGAAAACAAACCAGGCCTTATTGGAATT
AGAAAAAGCTTCTGAAGCTACAAGGATGTTTGATTATTACACTCGTTATC
CCCCTTGTTTTAATGGGCGAGAAATGATTGTTCAGTATTCTAAACATGTA
AGCCTTGAATTAAAATTGAAAAACAGCAATATTGATGCGTCAGTTGATGC
TGCTAACAAAATGAATGAAAAACATAGGTCTATAGTTGATGAATGGAGCT
CTGAAAATAAATCTGATAGAAGAATATTAAGAGTTGTCATTGAAAACTTG
AAAAATTACAATATTAACCACTTGGTAATTTTAAAGGTGTTCCAACGTTT
TGGAAAGGTTTTACGAATCATTATTTTTACAAAAAATATGCAATGCCAAT
GTTTGGTGGAACTAGACAATTCAATATCAGCTCATGTTTCCCTTTTACAC
CTCAATGGCCAGGATCTATTCAACGATTGTTGTCGTTTAAAAATTGAATT
TTCGAAAAACACCGACTCTCTTCAAATACAAAGACAAAACGACAAATGCC
GAGATTATACCGTTTCTCCTCTTCAAGAAGACGAACAGTTTTCTCTTCAT
TTTCTTGATTGGCAAGCCAAATCCGTCTCAACAGTTCCTCCACAACAATA
TCCATCATTGTCAACTGTTCCTTTATTGCAAACTCAAGTTCAAAAGCCTC
TTTATAGTGACTTTTTACCTAATAATTTATTTTATACTGTCATGCCAAAT
GTTTTCAAATCGACTTTTCAACCTTCACCAGTTGCCATTCCAGAATCTTT
GCTCATCTCCGATTGTGCAATAAATCCTTTGTATCAGGAACCAATTGTGA
AACCTCCTTCATCTGCCAATGCTATAGATTCATCTATTATTTTAGTATCA
AATTTGAATTATGAAAAGGTCAACACGGATTCCATTTTCACTCTTTTTGG
AGTTTATGGTGACGTGTCTAAAGTTTGTATATCCCCGCCATCTGTTGGAG
CAGCATTAGTATATATGCAAACGAATAGTCAAGCAGAAACTGCTTGTCGC
CATCTTAACTTAGTGCCTCTTTTTGGAAAAATAATTTCAACATATCTACT
TCCTGGGGAAATAGTTGCACAATCTATTTTCAACACTGAACTCAACTCAG
ACATTGAGGTTAAACATTTTACAAATACTCCACTGCACCGATTCAAAAAA
CCCAATTCCAAAAATCATTTTAACATTTATCCCCCAAGTTCTGTTCTTCA
TTTGAGCAATATTCCATTGTCCTTTAAAGAAGAGGATTTATTGACGCTTT
TCCATGATAACGGATTTCAATGTTCGAGCCTTAGAATTTTTCAGAAAGAT
AAAAAGATGGCATTAGCAAAAATGACATCTTTAGAAGATGCTATTTCAGC
TTTAATTTCACTGCATAATTGGAAATTGACAGACAGCTCACATCTCCGCG
TTAGTTTCAGCAAGGCCTTGATTTAAAGAAGAAGATTGGCAGTCGATTTA
CTACATTTTTCCGGATCTTCCCACACTGAAAACAATTCATTTTTTACTAT
GATAATTTGGAGTAGTGAATTTTCAGTTATTAAAAATTAATTTATGAATT
ACAAATGAGATTCATTATAATGATAATTAAATTTAGTAAATATTTTTATG
TACATTTTTTGAAAAAATTATAGAAATTTCGGA

protein sequence of SMED30009115-orf-1

>SMED30009115-orf-1 ID=SMED30009115-orf-1|Name=SMED30009115-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=643bp
MTFPQFDPRFSDISSLISLVSSASVDGSFTDPVHCGVLNSLANNQQAMLD
AQSLMVFPYFLNFPCNMPYTNPHFISNGQNTISGVKRSIQNFNSNSLLGS
SYSIDVDSNESKKSKLEPSTNTEPSKVLHIRNIASRAQESDLSLLAVPFG
KIRSMVYAKKTNQALLELEKASEATRMFDYYTRYPPCFNGREMIVQYSKH
VSLELKLKNSNIDASVDAANKMNEKHRSIVDEWSSENKSDRRILRVVIEN
LKNYNINHLVILKVFQRFGKVLRIIIFTKNMQCQCLVELDNSISAHVSLL
HLNGQDLFNDCCRLKIEFSKNTDSLQIQRQNDKCRDYTVSPLQEDEQFSL
HFLDWQAKSVSTVPPQQYPSLSTVPLLQTQVQKPLYSDFLPNNLFYTVMP
NVFKSTFQPSPVAIPESLLISDCAINPLYQEPIVKPPSSANAIDSSIILV
SNLNYEKVNTDSIFTLFGVYGDVSKVCISPPSVGAALVYMQTNSQAETAC
RHLNLVPLFGKIISTYLLPGEIVAQSIFNTELNSDIEVKHFTNTPLHRFK
KPNSKNHFNIYPPSSVLHLSNIPLSFKEEDLLTLFHDNGFQCSSLRIFQK
DKKMALAKMTSLEDAISALISLHNWKLTDSSHLRVSFSKALI*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000016	pharynx
PLANA:0000043	dorsal ventral margin of the whole animal
PLANA:0000099	neuron
PLANA:0000101	muscle cell
PLANA:0000418	head
PLANA:0002032	epidermal cell

Vocabulary: **INTERPRO**
Term	Definition
IPR006536	HnRNP-L/PTB
IPR035979	RBD_domain_sf
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **molecular function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding
GO:0000014	single-stranded DNA endodeoxyribonuclease activity
GO:0001069	regulatory region RNA binding
GO:0003697	single-stranded DNA binding
GO:0003723	RNA binding
GO:0003729	mRNA binding
GO:0043565	sequence-specific DNA binding

Vocabulary: **biological process**
Term	Definition
GO:0000381	regulation of alternative mRNA splicing, via spliceosome
GO:0000956	nuclear-transcribed mRNA catabolic process
GO:0003231	cardiac ventricle development
GO:0006259	DNA metabolic process
GO:0006397	mRNA processing
GO:0008380	RNA splicing
GO:0010976	positive regulation of neuron projection development
GO:0032024	positive regulation of insulin secretion
GO:0045727	positive regulation of translation
GO:0048025	negative regulation of mRNA splicing, via spliceosome
GO:0051148	negative regulation of muscle cell differentiation
GO:0070935	3'-UTR-mediated mRNA stabilization
GO:1904411	positive regulation of secretory granule organization

Vocabulary: **cellular component**
Term	Definition
GO:0005634	nucleus
GO:0005737	cytoplasm
GO:0044306	neuron projection terminus

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 245..315 e-value: 8.7E-5 score: 31.9 coord: 447..516 e-value: 2.7E-4 score: 30.3 coord: 566..636 e-value: 0.014 score: 23.1 coord: 127..196 e-value: 0.023 score: 21.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 446..513 score: 9.576
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 565..640 score: 9.303
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 244..321 score: 9.252
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 241..347 e-value: 9.3E-25 score: 88.7
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 442..555 e-value: 1.5E-15 score: 59.2
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 556..640 e-value: 2.9E-17 score: 64.4
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 108..230 e-value: 1.5E-20 score: 75.3
IPR006536	HnRNP-L/PTB	TIGRFAM	TIGR01649	TIGR01649	coord: 124..640 e-value: 9.3E-113 score: 375.7
None	No IPR available	PFAM	PF13893	RRM_5	coord: 432..528 e-value: 1.6E-18 score: 66.5 coord: 246..331 e-value: 5.2E-7 score: 29.3
None	No IPR available	PANTHER	PTHR15592	MATRIN 3/NUCLEAR PROTEIN 220-RELATED	coord: 109..640
None	No IPR available	PANTHER	PTHR15592:SF27	HEPHAESTUS, ISOFORM Y	coord: 109..640
None	No IPR available	CDD	cd12425	RRM4_PTBP1_like	coord: 566..640 e-value: 4.827E-28 score: 105.436
None	No IPR available	CDD	cd12421	RRM1_PTBP1_hnRNPL_like	coord: 127..200 e-value: 1.34359E-19 score: 81.0889
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 437..515
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 553..639
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 120..200
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 239..342

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Polypyrimidine tract-binding protein 1

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 9

Owlery

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