Neur_chan_LBD domain-containing protein

Overview
NameNeur_chan_LBD domain-containing protein
Smed IDSMED30009082
Length (bp)1293
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Neur_chan_LBD domain-containing protein (SMED30009082) t-SNE clustered cells

Violin plots show distribution of expression levels for Neur_chan_LBD domain-containing protein (SMED30009082) in cells (dots) of each of the 12 neoblast clusters.

 

back to top


 

Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020




SMED30009082

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 3

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
prepharyngeal regionSMED30009082h1SMcG0005914 SmedASXL_000430SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016
whole organism asexual adult RNA-sequencing evidence
parapharyngeal regionSMED30009082h1SMcG0005914 SmedASXL_000430SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016
whole organism asexual adult RNA-sequencing evidence
head regionSMED30009082h1SMcG0005914 OX_Smed_1.0.15693ox_Smed_v2PMID:24238224
Kao et al., 2013
whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Fly
Match: CG6927 (gene:FBgn0029733 transcript:FBtr0070721)

HSP 1 Score: 49.2914 bits (116), Expect = 4.635e-6
Identity = 57/211 (27.01%), Postives = 97/211 (45.97%), Query Frame = 3
Query:  327 WNPRMYIENCFGEIKETISREIVFYSEEPTKGFIIEKHRIKAMFHETLELRQFPFDCQDLSIILTSELSYDXXXXXXXXXXXXRINEHAEVDSQEWDLHKHV--EVSITDILSDCNVGPVKR--PSIKFTCRVSRRFGYXXXXXXXXXXXXXXXXXXXXXVSPQNTFGRLQLCMIILLTTVTFKVAVSQNLPKISYLTYLDKAILGNIVII 947
            W P +++ N        ++ + +  S  P  G +I  +RIKA  +  L L++FPFD Q  S +L S + Y+  E      +   I     +   E+ L +    E  I   LSD   G       S+ FT  ++R  G+++++ FL S+L+  +++ S  +       R+ L    LLT +T   A  + LPK+SY+   +   LG  + I
Sbjct:  127 WMPHIFLANERDSSILGLTEKDILTSISP-DGTVIVSNRIKATLYCWLNLKKFPFDEQHCSTVLESWM-YNTSELVLHWEQKRPITYDGALHLTEFVLQRSWSNETVINADLSDLRHGAFAGNYSSLSFTVHLTRVVGFYLMDYFLPSMLIVAISWVSFWLQADQAPPRITLGTSTLLTFITLASAQGKTLPKVSYIKVSEVWFLGCTIFI 335          
BLAST of Neur_chan_LBD domain-containing protein vs. TrEMBL
Match: R7VF52 (Neur_chan_LBD domain-containing protein OS=Capitella teleta OX=283909 GN=CAPTEDRAFT_228357 PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 3.442e-61
Identity = 135/360 (37.50%), Postives = 207/360 (57.50%), Query Frame = 3
Query:  177 VIVRCVFIKISHVDTVNERYYADVFLEAKWSDPSLENGKNEENEE-DFSKYWNPRMYIENCFGEIKETISREIVFYSEEPTKGFIIEKHRIKAMFHETLELRQFPFDCQDLSIILTSELSYDXXXXXXXXXXXXRINEHAEVDSQEWDLHKHVEVSITDILSDCNVGPVKRPSIKFTCRVSRRFGYXXXXXXXXXXXXXXXXXXXXXVSPQNTFGRLQLCMIILLTTVTFKVAVSQNLPKISYLTYLDKAILGNIVIIICLCIWHAVISHMFEDAIFQNSTATELSNTRQQILNLRHQENILLITFILGYSFVVLLFILIIYFDAGARRKKMHLKDKQFM----KKLEQLYDDQKHQPIS 1241
            V +R VF+KI  +DT+ E+Y AD F++AKW +P+L+    EE +  D  ++WNP ++IEN   E KE  +  +   +    + F++E+ R++ +F E LEL  FP D QDL++ +TSE    E++      E+S IN    VD QEW LH+H+EVS   +  + +      P++  TCR +RR GYF  N FL+   +  L+F++ AVSP+    RLQL   +LLT++TFK  ++Q+LPKISYLTY+DK +L ++VI+  +C+WHAV++      I               ++ L   E  + I F + Y    ++FI  +YFDA  RR+ M  KDK+++    KK E L   +   P S
Sbjct:   34 VELRVVFLKIGEIDTLKEQYSADTFIQAKWREPALDGKTTEELKRIDLDRFWNPLLFIENVLSETKE--ATWLTASTNSRAEAFVLERRRVRGVFMENLELNDFPLDVQDLTVTITSERPDTEIDIIPDENEMSGINVQTFVDQQEWRLHEHIEVSKKVMTQEYSSSNRCHPALSVTCRAARRPGYFYWNVFLVMFFISALSFATFAVSPELPQNRLQLSFTLLLTSITFKFVINQSLPKISYLTYMDKYVLLSLVILCMVCVWHAVVTVFVHHGI-------------NFLMTL---ERDVFIAFSVIYIGFHVVFIFWLYFDACKRRRLMKHKDKEYLDFLAKKKEWLEKTKDLNPQS 375          
BLAST of Neur_chan_LBD domain-containing protein vs. TrEMBL
Match: A0A3R7CFX9 (Neuronal acetylcholine receptor subunit alpha-7 OS=Clonorchis sinensis OX=79923 GN=CHRNA7 PE=4 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.228e-60
Identity = 143/378 (37.83%), Postives = 217/378 (57.41%), Query Frame = 3
Query:  192 VFIKISHVDTVNERYYADVFLEAKWSDPSLE----NGKNEENEEDF-----------------------SKYWNPRMYIENCFGEIKETISREIVFYSEEPTKGFIIEKHRIKAMFHETLELRQFPFDCQDLSIILTSELSYDXXXXXXXXXXXXRINEHAEVDSQEWDLHKHVEVSITDILSDCNVGPVKR--PSIKFTCRVSRRFGYXXXXXXXXXXXXXXXXXXXXXVSPQNTFGRLQLCMIILLTTVTFKVAVSQNLPKISYLTYLDKAILGNIVIIICLCIWHAVISHMFEDAIFQNSTATELSNTRQQILNLRHQENILLITFILGYSFVVLLFILIIYFDAGARRKKMHLKDKQFMKKLEQLYDDQKHQPI 1238
            +F+KI  VDTVNERY AD+FL+A+W +P L+      +   N   F                        ++WNPR+ ++N  GE  E +S E+ F  E   + +++EK RIK +FHETLEL+ FPFDCQDLS+ +T + + +E+E   S TE+S+++     DSQEW +  HV+++  +I +  + G  KR  P + FT R +RR GYF++N  LIS +L LL+FS  +V       RLQL +++LLTTVTFK A SQNLPKISYLTYLDK +L N  +++ L +WH +   +F                  +   L+ +E  ++ T +  Y    ++F L +Y DAG+RR+ M  KD  F +  +++  +++H+ I
Sbjct:   44 IFVKIGQVDTVNERYQADIFLQARWREPLLDATWNTSRPRNNFRTFKMVENPVMELAPKRHLHTLKLQDDEFWNPRLLLDNAQGEPIEIVSHEVEFV-EPDFEAYLVEKRRIKGVFHETLELKHFPFDCQDLSVTVTCDRTVEEVELVPSPTEVSQVDRRCAADSQEWKIFHHVDIASMEIQTAYSPGTCKRRHPGLVFTSRSARRAGYFMVNMALISCVLSLLSFSVFSVPVDG--NRLQLSLLLLLTTVTFKFAASQNLPKISYLTYLDKMVLANFFMLVILTVWHTIARSVF-----------------AKYPGLKDKEQYVVYTLLSAYCLGAVVFGLTVYLDAGSRRRLMKSKDMDFTQHKQRIELEKQHKSI 401          
BLAST of Neur_chan_LBD domain-containing protein vs. TrEMBL
Match: A0A4E0RSR9 (Uncharacterized protein OS=Fasciola hepatica OX=6192 GN=D915_005714 PE=4 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.062e-59
Identity = 145/363 (39.94%), Postives = 212/363 (58.40%), Query Frame = 3
Query:  192 VFIKISHVDTVNERYYADVFLEAKWSDPSLE-NGKNEENEEDF--------------------------SKYWNPRMYIENCFGEIKETISREIVFYSEEPT-KGFIIEKHRIKAMFHETLELRQFPFDCQDLSIILTSELSYDXXXXXXXXXXXXRINEHAEVDSQEWDLHKHVEVSITDILSDCNVGPVKR--PSIKFTCRVSRRFGYXXXXXXXXXXXXXXXXXXXXXVSPQNTFGRLQLCMIILLTTVTFKVAVSQNLPKISYLTYLDKAILGNIVIIICLCIWHAVISHMFEDAIFQNSTATELSNTRQQILNLRHQENILLITFILGYSFVVLLFILIIYFDAGARRKKMHLKDKQF 1190
            +F+KI  VDTVNERY AD+FL+A+W +P L+   K+E  ++++                           ++WNPR+ ++N  GE  E +S E+ F   EPT + +++EK RIK +FHETLEL+ FPFD QDLS+ +T + S DE+    S TE+S+++     DSQEW +  HV+V   +I +  + G  KR  P + FT R +RR GYF++N  LIS +LCLL+F   +V       RLQ  +++LLTTVTFK A SQNLPKISYLTYLDK +L N  +++ L +WH +              A  LS +  ++L+    E  ++ T +  Y    ++F L +Y DAG+RR+ M  KD +F
Sbjct:    3 IFVKIGQVDTVNERYQADIFLQARWREPLLDATWKSERAQKNWRGKSGVENPIQDLVPKRHLHTLGLQDDEFWNPRLLLDNAQGEPIEIVSHEVEFV--EPTFEAYLVEKRRIKGVFHETLELKHFPFDVQDLSVTVTCDRSVDEVLLVPSPTEVSQVDRRGAADSQEWKIFHHVDVERMEIQTAYSPGTSKRRHPGLVFTSRSARRSGYFMVNMVLISCVLCLLSFCIFSVPVDG--NRLQQALLLLLTTVTFKFAASQNLPKISYLTYLDKVVLANFFMLVILTVWHTI--------------ARSLSASYPKLLD---NEKYVVYTLLSSYCLGAVIFGLTVYLDAGSRRRLMQRKDVEF 344          
BLAST of Neur_chan_LBD domain-containing protein vs. TrEMBL
Match: A0A075A8W6 (Uncharacterized protein OS=Opisthorchis viverrini OX=6198 GN=T265_08254 PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 6.637e-59
Identity = 148/401 (36.91%), Postives = 225/401 (56.11%), Query Frame = 3
Query:  123 DILPKMVQIMRSRGKKNNVIVRCVFIKISHVDTVNERYYADVFLEAKWSDPSLE----NGKNEENEEDFS-----------------------KYWNPRMYIENCFGEIKETISREIVFYSEEPTKGFIIEKHRIKAMFHETLELRQFPFDCQDLSIILTSELSYDXXXXXXXXXXXXRINEHAEVDSQEWDLHKHVEVSITDILSDCNVGPVKR--PSIKFTCRVSRRFGYXXXXXXXXXXXXXXXXXXXXXVSPQNTFGRLQLCMIILLTTVTFKVAVSQNLPKISYLTYLDKAILGNIVIIICLCIWHAVISHMFEDAIFQNSTATELSNTRQQILNLRHQENILLITFILGYSFVVLLFILIIYFDAGARRKKMHLKDKQFMKKLEQLYDDQKHQPI 1238
            D L +M  +   R     V +  +F+KI  VDTVNERY AD+FL+A+W +P L+      +   N   F+                       ++WNPR+ ++N  GE  E +S E+ F  E   + +++EK RIK +FHETLEL+ FPFDCQDLS+ +T + + +E+E   S TE+S+++     DSQEW +  HV+++  +I +  + G  KR  P + FT R +RR GYF++N  LIS +L LL+FS  +V       RLQL +++LLTTVTFK A SQNLPKISYLTYLDK +L N  +++ L +WH +   +F                  +   L+ +E  ++ T +  Y    ++F L +Y DAG+RR+ M  KD  F +  +++   ++H+ I
Sbjct:  221 DELSQMKHLEPVRHPPARVELMLIFVKIGQVDTVNERYQADIFLQARWREPLLDATWNTSRPRNNFRTFNMVENPVMELAPKRHLHTLKLQDDEFWNPRLLLDNAQGEPIEIVSHEVEFV-EPDFEAYLVEKRRIKGIFHETLELKHFPFDCQDLSVTVTCDRTVEEVELVPSPTEVSQVDRRCAADSQEWKIFHHVDIASMEIQTAYSPGTCKRRHPGLVFTSRSARRAGYFMVNMALISCVLSLLSFSVFSVPVDG--NRLQLSLLLLLTTVTFKFAASQNLPKISYLTYLDKMVLANFFMLVILTVWHTIARSVFA-----------------KYPGLKDKEQYVVYTLLSAYCLGAVVFGLTVYLDAGSRRRLMKSKDMDFTQHKQRIELAKQHKSI 601          
BLAST of Neur_chan_LBD domain-containing protein vs. TrEMBL
Match: A0A210Q143 (Cys-loop ligand-gated ion channel OS=Mizuhopecten yessoensis OX=6573 GN=KP79_PYT24637 PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 9.284e-59
Identity = 139/368 (37.77%), Postives = 216/368 (58.70%), Query Frame = 3
Query:  114 AKLDILPKMVQIMRSRGKKNNVIVR-CV-FIKISHVDTVNERYYADVFLEAKWSDPSLENGKNEENEE-DFSKYWNPRMYIENCFGEIKETISREIVFYSEEPTKGFIIEKHRIKAMFHETLELRQFPFDCQDLSIILTSELSYDXXXXXXXXXXXXRINEHAEVDSQEWDLHKHVEVSITDILSDCNVGPVKRPSIKFTCRVSRRFGYXXXXXXXXXXXXXXXXXXXXXVS---PQNTFGRLQLCMIILLTTVTFKVAVSQNLPKISYLTYLDKAILGNIVIIICLCIWHAVISHMFEDAIFQNSTATELSNTRQQILNLRHQENILLITFILGYSFVVLLFILIIYFDAGARRKKMHLKDKQFMKK 1199
            A    +  M   +RS      V V+ CV F K+  +DT+ E+Y ADV ++AKW +PSL+ G+N+ +E  +F+K WNP++YIEN  G+ KE I  ++++   +  + ++ EK  IK  F E LEL  FPFD QD++I + SEL   E+E  E   +   +N+ A VD QEW L+ H E    DI+ D     V+R ++   CR +RR GYF+ N F+++ L+C LAF++ +V+   PQN   RLQL   ++LT V FK AV+ +LP+ISYLTY+DK +L  +V++  +C+WHA++S +          AT+    R +I      E+++L      Y F  + F ++IY     +R++M  KDK++  K
Sbjct:    2 ATYSAMKSMWYFIRSTASSFQVKVKICVQFFKVGEIDTLKEQYTADVIVKAKWREPSLD-GQNKTSESVEFNKMWNPKLYIENSLGDPKEQIRYQVLY--NDKGEAYVSEKRVIKGTFMENLELDDFPFDVQDITITVASELPSSEVELIEDDDDHHVVNKQAFVDEQEWHLYMHTECVKRDIVIDQADMSVRRSALSVKCRAARRPGYFVWNIFVVTFLICSLAFTTFSVNNNLPQN---RLQLSFTLVLTAVAFKSAVNSSLPRISYLTYMDKYLLIAMVMLTAVCVWHAIVSTL----------ATQ--EKRDRI------ESVVLTVLAAIYIFYNIGFFIVIYVSPWKKRREMQQKDKEYQMK 345          
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Cavefish
Match: gabrg1 (gamma-aminobutyric acid type A receptor gamma1 subunit [Source:NCBI gene;Acc:103030074])

HSP 1 Score: 48.9062 bits (115), Expect = 7.775e-6
Identity = 79/354 (22.32%), Postives = 144/354 (40.68%), Query Frame = 3
Query:   87 IFNVKRYQTAKLDILPKMVQIMRSR-----GKKNNVIVRCVFI-KISHVDTVNERYYADVFLEAKWSDPSLENGKNEE----NEEDFSKYWNPRMYIENCFGEIKETIS---REIVFYSEEPTKGFIIEKHRIKAMFHETLELRQFPFDCQDLSIILTSELSYDXXXXXXXXXXXXRINEHAEVDSQEWDLHKHVEVSI--TDILSDCNVGPVKRPSIKFTCRVSRRFGYXXXXXXXXXXXXXXXXXXXXXVSPQNTFGRLQLCMIILLTTVTFKVAVSQNLPKISYLTYLDKAILGNIVIIICLCIWHAVISHMFEDAIFQNSTATELSNTRQQILNLRHQENILLITFILGY 1103
            + + K Y++    IL K++Q   ++     G K  +I   V++  I  VD +N  Y  D+F    W D  L+   + +    N     K W P  +  N        I+   R +  +S     G ++   R+       L+L  FP D     +  +S   Y   +        SR  + A  D + W L++   V +  T  ++    G     SI FT  +SRR GYF I  ++   ++ +L++ S  ++      R  L +  +LT  T      ++LPK+SY+T +D  +    +      + +  + +   +   QN      S  +  ++N+R   ++L +  I  Y
Sbjct:   44 VLSPKVYESDVTLILNKLLQGYDNKLRPDIGVKPTLIDAAVYVNSIGPVDPINMEYTIDIFFAQSWYDSRLQFNSSMKVLMLNSNMVGKIWIPDTFFRNSRKSDAHWITTPNRLLRLWSN----GRVMYTLRLTINAECYLKLHNFPMDEHSCPLEFSS---YGYPKNEIEYKWHSRAVQVA--DQRYWRLYQFAFVGLQNTTGIAHTQSGDYVVMSILFT--LSRRMGYFTIQTYIPCSMIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTISRKSLPKVSYVTAMDLFVSVCFIFTFAALMEYGTLHYFTSNR--QNKKTKTNSAPKSSMVNIRPGTSLLQMNNIAPY 384          
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Nematostella
Match: EDO32790 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SU26])

HSP 1 Score: 103.605 bits (257), Expect = 2.499e-24
Identity = 80/271 (29.52%), Postives = 139/271 (51.29%), Query Frame = 3
Query:  168 KNNVIVRCVFIKISHVDTVNERYYADVFLEAKWSDPSLENGKNEENEEDFSKYWNPRMYIENCFGEIKETISREIVFYSEEPTKGFIIEKHRIKAMFHETLELRQFPFDCQDLSIILTSELSYDXXXXXXXXXXXXRINEHAEVDSQEWDLHKHVEVSITDILSDCNVGPVKR--PSIKFTCRVSRRFGYXXXXXXXXXXXXXXXXXXXXXVSPQNTFGRLQLCMIILLTTVTFKVAVSQNLPKISYLTYLDKAILGNIVIIICLCIWHAV 974
            K  V++RC    +  +D + +++  ++++ A W +P L   KNEE + D    W+P++   N     +    R + +Y E  T     E ++I+  F E   L QFP D Q+LSII++S+ S   + F +   +   + +      ++W L+ HV    T       +GP  R  P    T  V RR  ++  N  ++  +L  L+F+S A+ PQ T  RL + +++LL +V +K   S +LP+ SYLT+LDK  LGN++ I  + + + +
Sbjct:   15 KVTVLIRCGISFLGDIDVIRQQFTCELWMTASWREPKLAGKKNEEVKWD--NEWSPKISFSNSLLLDRVYKGRRL-YYEENSTVPLAQEVYKIRGTFKEQFSLEQFPVDLQELSIIISSDWSDRTVTFEKDMAKPDYLRQQTFSSPRDWVLYPHVHTD-TATQEGEGLGPNDRSYPVYIITAHVRRRAVHYFWNTAVVMSVLTALSFASFAIPPQQTADRLTVTLLLLLISVAYKFVTSLHLPRTSYLTFLDKYQLGNLLFISFIAVLNTI 281          
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Nematostella
Match: EDO37396 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SFV7])

HSP 1 Score: 57.3806 bits (137), Expect = 4.457e-9
Identity = 68/310 (21.94%), Postives = 128/310 (41.29%), Query Frame = 3
Query:  162 GKKNNVIVRCVFIKISHVDTVNERYYADVFLEAKWSDPSLENGKNEE---NEEDFSKYWNPRMYIENCFGEIKETISREIVFYSEEPTKGFIIEKHRIKAMFHETLELRQFPFDCQDLSIILTSELSYDXXXXXXXXXXXXRINEHAEVDSQE-----------WDLHKHVEVSITDILSDCNVGPVKRPSIKFTCRVSRRFGYXXXXXXXXXXXXXXXXXXXXXVSPQNTFGRLQLCMIILLTTVTFKVAVSQNLPKISYLTYLDKAILGNIVIIICLCIWHAVISHMFEDAIFQNSTATELSNTRQQI 1049
            GK   V V    + +  +D VN  +  D+FL  +W DP L++G NE          K W P  Y  N        ++         P  G +    R+      T++LR FP D Q+  ++L S   YD           S I  H E ++ +              +  V ++++       +G        F+  + R + YF+ + +  S ++  +++    + P  T  R+ + +  LLT VT    ++ ++PK+SY+  +DK ++  ++ +    I + VI  +      ++   T+ +NT + I
Sbjct:   56 GKPVVVKVGYWILSVDSIDVVNMDFTVDLFLRQEWVDPRLDHGLNETIYLGHRVMQKIWTPDSYFLNAKTAKMHHVTTPNQMTLIAPM-GVVKYNTRVTVKAACTIDLRSFPMDQQNCPLVLES-YGYD----------RSHIVYHWEGNATDGLPFVPNRMRIMPQYSLVRLTLSREWHQYIIGNFSAVVAVFS--IERSYTYFLTHVYGTSCVIVFISWMGFVIPPDQTAARIAVGVTTLLTQVTVINILNSSMPKVSYVKSIDKFLISCLIFVFLSLIEYCVILILDGKRTRRHQQHTDTANTHETI 351          
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Nematostella
Match: EDO37555 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SFG6])

HSP 1 Score: 49.6766 bits (117), Expect = 1.287e-6
Identity = 63/277 (22.74%), Postives = 116/277 (41.88%), Query Frame = 3
Query:  162 GKKNNVIVRCVFIKISHVDTVNERYYADVFLEAKWSDPSLENGKNEE---NEEDFSKYWNPRMYIENCFGEIKETISREIVFYSEEPTKGFIIEKHRIKAMFHETLELRQFPFDCQDLSIILTSELSYDXXXXXXXXXXXXRINEHAEVDSQEWDLHKHVEVSITDILSDCNVG-------PVKRPSIKFTCRVSRRFGYXXXXXXXXXXXXXXXXXXXXXVSPQNTFGRLQLCMIILLTTVTFKVAVSQNLPKISYLTYLDKAILGNIVIIICLCI 962
            G    V V    + I  ++ ++  Y  D FL   W DP L++  ++    +     K W P  Y  N       +++      S  P  G +    R+       + LR FP D Q+ +I + S   Y     +      +R +    V+ +  D+ ++        LSD NV              +  T R  RR GYFII+ +    L+ +L++ S  + P++T  R+ L +  +LT  T    ++ ++PK+SY+  +D  ++G  + +  + +
Sbjct:   27 GDPVTVTVGFWVLSIDAINVIDMDYRMDFFLRQLWRDPRLKHRFDDTLALSNTMLDKIWVPDTYFVNSKMSKFHSVTTINKMLSISP-DGLVHYNSRVTVKASCAMNLRMFPKDVQNCNIDIES---YGYSADNVQYQWENRSDNGIAVNKKIRDMPQYN-------LSDINVSRHFTMYVAGNWSGLTATFRFRRRSGYFIIHIYAPCALIVILSWISFCIPPESTAARIALGITSVLTITTILNMLNNSMPKVSYVKAVDWYLIGCFLFVFAVLL 292          
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Nematostella
Match: EDO43147 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RZH2])

HSP 1 Score: 48.1358 bits (113), Expect = 2.693e-6
Identity = 56/257 (21.79%), Postives = 103/257 (40.08%), Query Frame = 3
Query:  198 IKISHVDTVNERYYADVFLEAKWSDPSLENGKNEE--NEEDFSK-YWNPRMYIENC----FGEIKETISREIVFYSEEPTKGFIIEKHRIKAMFHETLELRQFPFDCQDLSIILTSELSYDXXXXXXXXXXXXRINEHAEVDSQEWDLHKHVEVSITDILSDCNVGPVKRPSIKFTCRVSRRFGYXXXXXXXXXXXXXXXXXXXXXVSPQNTFGRLQLCMIILLTTVTFKVAVSQNLPKISYLTYLDKAILGNIVII 947
            + +  ++  +  +  D+F    W +P   +  +E     ED  K +W P  Y  N     F ++ +  +R I++ S     G +    R+       + L+ FP D Q   + + S   Y             R  +  E+ S E      VE     I +    G   +    F+ +  RR  YF I     +++L +L++    + P     R+ L +  +L+T+     V+  +PK+SY+  +D  +LGN   I
Sbjct:   37 VSLGGINEASMEFSMDIFFRQWWHEPRFTHNYSEPFTMAEDAGKLFWIPDTYFINAKKSNFHKVTKENARIIIYPS-----GNVYYSVRLTLTLQCNMNLQLFPMDVQACPLFIES---YAYTSEDIKYKWTPRGTKGIEIISNETAQFVLVEARTEQIATAKISGHFSQLVATFSLK--RRLEYFAITVVTPAMILVVLSWCCFWIVPDAIPARISLSVTTILSTLLLSGTVNAQMPKVSYMKAIDVFVLGNFAFI 283          
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Nematostella
Match: EDO47783 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RL25])

HSP 1 Score: 48.1358 bits (113), Expect = 3.607e-6
Identity = 57/275 (20.73%), Postives = 114/275 (41.45%), Query Frame = 3
Query:  162 GKKNNVIVRCVFIKISHVDTVNERYYADVFLEAKWSDPSLENGKNEE---NEEDFSKYWNPRMYIENCFGEIKETISREIVFYSEEPTKGFIIEKHRIKAMFHETLELRQFPFDCQDLSIILTSELSYDXXXXXXXXXXXXRINEHAEVDSQEWDLHKHVEVSITDILSDCNVGPVKRPSIKFTCRVSRRFGYXXXXXXXXXXXXXXXXXXXXXVSPQNTFGRLQLCMIILLTTVTFKVAVSQNLPKISYLTYLDKAILGNIVIIICLCIWHAVI 977
            G    V V    + I  ++ ++  +  D+FL  +W D  L++  NE    +     K W P  Y  N       T++ +       P  G +    R+    +  +ELR FP D Q   ++  S    D          ++ I E  ++  Q    +   EV+++   +   VG      +K T    R + YFI + +  S ++ ++++    +       R+ L +  +LT VT    +S  + K++Y+  +D+ ++G  + + C  I ++ +
Sbjct:   23 GHPVVVTVGFTLLSIDTINVIDMDFSMDMFLRQEWYDQRLDHKTNETVFLSNHVMDKIWLPDSYFVNAKDAKFHTVTTDNKMIMLSP-GGRVQYNARVSVRLYCDMELRDFPMDTQYCPVVFESYGYSDRHITFVWELGMNTIPERLKILPQ----YNLKEVALSTTYNVYVVG--NWSGVKATFAFERTYSYFIYHVYAPSAIIVVISWIGFVLPRDKPPARITLGVTSVLTIVTVLNMLSNTVAKVNYVKRIDEYLIGCFLFVFCSLIEYSFV 290          
BLAST of Neur_chan_LBD domain-containing protein vs. Planmine SMEST
Match: SMESG000031120.1 (SMESG000031120.1)

HSP 1 Score: 731.865 bits (1888), Expect = 0.000e+0
Identity = 402/403 (99.75%), Postives = 403/403 (100.00%), Query Frame = 3
Query:   69 MTKRNSIFNVKRYQTAKLDILPKMVQIMRSRGKKNNVIVRCVFIKISHVDTVNERYYADVFLEAKWSDPSLENGKNEENEEDFSKYWNPRMYIENCFGEIKETISREIVFYSEEPTKGFIIEKHRIKAMFHETLELRQFPFDCQDLSIILTSELSYDXXXXXXXXXXXXRINEHAEVDSQEWDLHKHVEVSITDILSDCNVGPVKRPSIKFTCRVSRRFGYXXXXXXXXXXXXXXXXXXXXXVSPQNTFGRLQLCMIILLTTVTFKVAVSQNLPKISYLTYLDKAILGNIVIIICLCIWHAVISHMFEDAIFQNSTATELSNTRQQILNLRHQENILLITFILGYSFVVLLFILIIYFDAGARRKKMHLKDKQFMKKLEQLYDDQKHQPISSSLIPFFASKTV 1277
            MTKRNSIFNVKRYQTAKLDILPKMVQIMRSRGKKNNVIVRCVFIKISHVDTVNERYYADVFLEAKWSDPSLENGKNEENEEDFSKYWNPRMYIENCFGEIKETISREIVFYSEEPTKGFIIEKHRIKAMFHETLELRQFPFDCQDLSIILTSELSYDELEFSESSTELSRINEHAEVDSQEWDLHKHVEVSITDILSDCNVGPVKRPSIKFTCRVSRRFGYFIINNFLISILLCLLAFSSLAVSPQNTFGRLQLCMIILLTTVTFKVAVSQNLPKISYLTYLDKAILGNIVIIICLCIWHAVISHMFEDAIFQNSTATELSNTRQQILNLRHQENILLITFILGYSFVVLLFIL+IYFDAGARRKKMHLKDKQFMKKLEQLYDDQKHQPISSSLIPFFASKTV
Sbjct:    1 MTKRNSIFNVKRYQTAKLDILPKMVQIMRSRGKKNNVIVRCVFIKISHVDTVNERYYADVFLEAKWSDPSLENGKNEENEEDFSKYWNPRMYIENCFGEIKETISREIVFYSEEPTKGFIIEKHRIKAMFHETLELRQFPFDCQDLSIILTSELSYDELEFSESSTELSRINEHAEVDSQEWDLHKHVEVSITDILSDCNVGPVKRPSIKFTCRVSRRFGYFIINNFLISILLCLLAFSSLAVSPQNTFGRLQLCMIILLTTVTFKVAVSQNLPKISYLTYLDKAILGNIVIIICLCIWHAVISHMFEDAIFQNSTATELSNTRQQILNLRHQENILLITFILGYSFVVLLFILVIYFDAGARRKKMHLKDKQFMKKLEQLYDDQKHQPISSSLIPFFASKTV 403          
BLAST of Neur_chan_LBD domain-containing protein vs. Planmine SMEST
Match: SMESG000031120.1 (SMESG000031120.1)

HSP 1 Score: 487.263 bits (1253), Expect = 6.654e-173
Identity = 283/285 (99.30%), Postives = 283/285 (99.30%), Query Frame = 3
Query:   69 MTKRNSIFNVKRYQTAKLDILPKMVQIMRSRGKKNNVIVRCVFIKISHVDTVNERYYADVFLEAKWSDPSLENGKNEENEEDFSKYWNPRMYIENCFGEIKETISREIVFYSEEPTKGFIIEKHRIKAMFHETLELRQFPFDCQDLSIILTSELSYDXXXXXXXXXXXXRINEHAEVDSQEWDLHKHVEVSITDILSDCNVGPVKRPSIKFTCRVSRRFGYXXXXXXXXXXXXXXXXXXXXXVSPQNTFGRLQLCMIILLTTVTFKVAVSQNLPKISYLTYLDKA 923
            MTKRNSIFNVKRYQTAKLDILPKMVQIMRSRGKKNNVIVRCVFIKISHVDTVNERYYADVFLEAKWSDPSLENGKNEENEEDFSKYWNPRMYIENCFGEIKETISREIVFYSEEPTKGFIIEKHRIKAMFHETLELRQFPFDCQDLSIILTSELSYDELEFSESSTELSRINEHAEVDSQEWDLHKHVEVSITDILSDCNVGPVKRPSIKFTCRVSRRFGYFIINNFLISILLCLLAFSSLAVSPQNTFGRLQLCMIILLTTVTFKVAVSQNLPKISYLTYL  A
Sbjct:    1 MTKRNSIFNVKRYQTAKLDILPKMVQIMRSRGKKNNVIVRCVFIKISHVDTVNERYYADVFLEAKWSDPSLENGKNEENEEDFSKYWNPRMYIENCFGEIKETISREIVFYSEEPTKGFIIEKHRIKAMFHETLELRQFPFDCQDLSIILTSELSYDELEFSESSTELSRINEHAEVDSQEWDLHKHVEVSITDILSDCNVGPVKRPSIKFTCRVSRRFGYFIINNFLISILLCLLAFSSLAVSPQNTFGRLQLCMIILLTTVTFKVAVSQNLPKISYLTYLAGA 285          

HSP 2 Score: 94.3597 bits (233), Expect = 2.573e-21
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 3
Query: 1146 AGARRKKMHLKDKQFMKKLEQLYDDQKHQPISSSLIPFFASKTV 1277
            AGARRKKMHLKDKQFMKKLEQLYDDQKHQPISSSLIPFFASKTV
Sbjct:  283 AGARRKKMHLKDKQFMKKLEQLYDDQKHQPISSSLIPFFASKTV 326          
BLAST of Neur_chan_LBD domain-containing protein vs. Planmine SMEST
Match: SMESG000041740.1 (SMESG000041740.1)

HSP 1 Score: 345.51 bits (885), Expect = 1.386e-116
Identity = 190/350 (54.29%), Postives = 251/350 (71.71%), Query Frame = 3
Query:  177 VIVRCVFIKISHVDTVNERYYADVFLEAKWSDPSLENGKNEENEEDFSKYWNPRMYIENCFGEIKETISREIVFYSEEPTKGFIIEKHRIKAMFHETLELRQFPFDCQDLSIILTSELSYDXXXXXXXXXXXXRINEHAEVDSQEWDLHKHVEVSITDILSDCNVGPVKRPSIKFTCRVSRRFGYXXXXXXXXXXXXXXXXXXXXXVSPQNTFGRLQLCMIILLTTVTFKVAVSQNLPKISYLTYLDKAILGNIVIIICLCIWHAVISHMFEDAIFQNSTATELSNTRQQILNLRHQENILLITFILGYSFVVLLFILIIYFDAGARRKKMHLKDKQFMKKLEQLYDDQK 1226
            V +RCVF+KI  VDTVNE Y A++FL+AKW +P L+N K E    D SK+WNPR+ IEN F E  ET+  E V Y E+    F+++K R+KA+FHETLEL QFPFDCQDLS+ ++SE S DE+E  E  T++S++N    V+SQEWDLH HV+V I  I++DCN+GP +R SI FTCR  RRFGYF++N+FLIS +   L F S +V   NTFGRLQLCMI LLT+VTFKVAVS NLPK+ YLTYLDKAILGNI +I+CLC+WHA  S  F D     ST  +  N    I  ++  E  L+   ++ Y   V++F L+IYFDAG+RR++MHLKD +F +K+++L ++++
Sbjct:   16 VFIRCVFLKIFQVDTVNEYYNAEIFLQAKWREPILDN-KLETKNIDLSKFWNPRLVIENLFKENNETVLLE-VSYVEKEGVAFVVQKRRVKAIFHETLELNQFPFDCQDLSVTVSSEYSSDEVELVEFPTDISKLNSSDAVESQEWDLHSHVDVEIKRIITDCNIGPKERTSITFTCRAGRRFGYFLVNHFLISCMFFFLTFCSFSVISSNTFGRLQLCMITLLTSVTFKVAVSNNLPKVPYLTYLDKAILGNIFMIMCLCLWHAATSVYFYD-----STTLQSINDSIAIEKVKQVEKYLIPALLIFYVTAVVVFALVIYFDAGSRRREMHLKDIEFEQKIKRLKNEER 358          
BLAST of Neur_chan_LBD domain-containing protein vs. Planmine SMEST
Match: SMESG000041696.1 (SMESG000041696.1)

HSP 1 Score: 345.125 bits (884), Expect = 1.456e-116
Identity = 196/360 (54.44%), Postives = 261/360 (72.50%), Query Frame = 3
Query:  159 RGKKNNVIVRCVFIKISHVDTVNERYYADVFLEAKWSDPSLENGKNEENEEDFSKYWNPRMYIENCFGEIKETISREIVFYSEEPTKGFIIEKHRIKAMFHETLELRQFPFDCQDLSIILTSELSYDXXXXXXXXXXXXRINEHAEVDSQEWDLHKHVEVSITDILSDCNVGPVKRPSIKFTCRVSRRFGYXXXXXXXXXXXXXXXXXXXXXVSPQNTFGRLQLCMIILLTTVTFKVAVSQNLPKISYLTYLDKAILGNIVIIICLCIWHAVISHMFEDAIFQNSTATELSNTRQQILN-LRHQENILLITFILGYSFVVLLFILIIYFDAGARRKKMHLKDKQFMKKL-----EQLYDD 1220
            + ++  V +RCVF+KI HVDTVNE + A++FL++KW +PSL+N K+ +++E  SK WNP+++IEN + E K+T+ RE V Y ++    ++IEK RI A+FHETLEL+QFPFDCQDLSI++++ELS DE+ F E   ++S++N    +DSQEWDLH HV+V I +++SDCN+GP KR +I FTCR SRRFGYFI+N+ LIS +  LL F S AV   NT GRLQLCMIILLT+VTFKVAVS+NLPKI YLTYLDKA+LGNI +I+CLC+WHA  S  F D    N        T  ++L  +R  E IL+ + ++ Y F + +F LIIYFDAG RRK M  KD +F KK+     E+LY D
Sbjct:    3 KKRQIRVYIRCVFVKIFHVDTVNEHFSAEIFLQSKWREPSLDNVKDFKSKE-ISKLWNPKIHIENIYKENKQTVVRE-VHYPDKKGSAYMIEKRRINAIFHETLELKQFPFDCQDLSIVVSTELSADEMIFVEYPNDISKLNLSDAIDSQEWDLHSHVDVEIKEVISDCNIGPEKRYTITFTCRASRRFGYFILNHMLISSMFVLLTFCSFAVISNNTHGRLQLCMIILLTSVTFKVAVSENLPKIPYLTYLDKAVLGNIFMIMCLCMWHAATSIFFYDFKTLNYI------TENRVLEVIRKIEMILIPSLLVFYLFSIFIFGLIIYFDAGNRRKLMKSKDIEFEKKIIKMNNEELYCD 354          
BLAST of Neur_chan_LBD domain-containing protein vs. Planmine SMEST
Match: SMESG000064442.1 (SMESG000064442.1)

HSP 1 Score: 323.939 bits (829), Expect = 3.471e-108
Identity = 184/341 (53.96%), Postives = 243/341 (71.26%), Query Frame = 3
Query:  183 VRCVFIKISHVDTVNERYYADVFLEAKWSDPSLENGKNEENEEDFSKYWNPRMYIENCFGEIKETISREIVFYSEEPTKGFIIEKHRIKAMFHETLELRQFPFDCQDLSIILTSELSYDXXXXXXXXXXXXRINEHAEVDSQEWDLHKHVEVSITDILSDCNVGPVKRPSIKFTCRVSRRFGYXXXXXXXXXXXXXXXXXXXXXVSPQNTFGRLQLCMIILLTTVTFKVAVSQNLPKISYLTYLDKAILGNIVIIICLCIWHAVISHMFEDAIFQNSTATELSNTRQQILNLRHQENILLITFILGYSFVVLLFILIIYFDAGARRKKMHLKDKQFMKKLE 1205
            +RCVF+KI  VDTVNE YYAD+FL++KW +P L+  K+ +++ D    WNP++++EN + E + T S E V++ +     ++IEK RI   FHETLEL+QFPFDCQDLSI ++SE S +E++  ES T+LS +N  +EV+SQEW++H HVEVS   ++++CN+GP  +  I FTCR SRRF YF+IN+ LIS++LCLL F S AV P NT GRLQLCMIILLTTVTFKVAVSQNLPKI YLTYLDKAILGNI +I+CLC+WHA+ S  F +   Q S          +I N+R  E  ++   +  Y   + +F L IYFDAG RR+ M LKD +F KKL+
Sbjct:   18 IRCVFVKICQVDTVNEVYYADIFLQSKWREPLLD--KSLDSQVDLKNLWNPKLFVENLYKENQNTTSLE-VYFPDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSSECSIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILGNIFVIMCLCLWHALTSIFFLNQNLQKS----------KIENIRKIECFIIPILLTSYIMAIFVFGLAIYFDAGKRRRLMKLKDLEFGKKLK 345          
The following BLAST results are available for this feature:
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 1
Match NameE-valueIdentityDescription
CG69274.635e-627.01gene:FBgn0029733 transcript:FBtr0070721[more]
back to top
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Neur_chan_LBD domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Neur_chan_LBD domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
R7VF523.442e-6137.50Neur_chan_LBD domain-containing protein OS=Capitel... [more]
A0A3R7CFX91.228e-6037.83Neuronal acetylcholine receptor subunit alpha-7 OS... [more]
A0A4E0RSR91.062e-5939.94Uncharacterized protein OS=Fasciola hepatica OX=61... [more]
A0A075A8W66.637e-5936.91Uncharacterized protein OS=Opisthorchis viverrini ... [more]
A0A210Q1439.284e-5937.77Cys-loop ligand-gated ion channel OS=Mizuhopecten ... [more]
back to top
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
gabrg17.775e-622.32gamma-aminobutyric acid type A receptor gamma1 sub... [more]
back to top
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5
Match NameE-valueIdentityDescription
EDO327902.499e-2429.52Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO373964.457e-921.94Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO375551.287e-622.74Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO431472.693e-621.79Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO477833.607e-620.73Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
back to top
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Neur_chan_LBD domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000031120.10.000e+099.75SMESG000031120.1[more]
SMESG000031120.16.654e-17399.30SMESG000031120.1[more]
SMESG000041740.11.386e-11654.29SMESG000041740.1[more]
SMESG000041696.11.456e-11654.44SMESG000041696.1[more]
SMESG000064442.13.471e-10853.96SMESG000064442.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30009082 ID=SMED30009082|Name=Neur_chan_LBD domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1293bp
GTGCTGAATGTGTCATTTTTTTTTGATTTATTTCTGAATTATTGGGAATT
TATTCGAGTTCATGCTAAATGACTAAACGAAATTCAATTTTCAATGTTAA
AAGATATCAAACGGCAAAATTAGACATTTTACCAAAAATGGTTCAAATTA
TGAGAAGCCGAGGTAAAAAAAATAACGTGATAGTTAGATGCGTTTTCATA
AAAATATCCCATGTTGATACAGTCAATGAGAGATATTATGCAGATGTTTT
TCTTGAAGCCAAATGGAGTGATCCTTCTTTAGAAAATGGTAAAAATGAAG
AAAATGAGGAGGATTTCTCTAAATATTGGAATCCCAGAATGTATATAGAA
AATTGCTTTGGAGAAATAAAAGAAACTATTTCCCGAGAGATTGTGTTTTA
TTCTGAAGAGCCTACCAAAGGTTTTATAATCGAGAAACACCGAATAAAAG
CAATGTTTCATGAAACTTTAGAATTACGACAATTCCCATTCGATTGCCAA
GATTTGTCCATAATTCTTACTAGTGAACTATCTTATGATGAATTGGAATT
TTCAGAATCCTCTACCGAATTAAGCCGCATAAATGAACATGCTGAGGTAG
ATTCTCAAGAATGGGACTTACACAAACATGTAGAAGTTTCGATTACTGAT
ATTCTTTCCGATTGCAACGTTGGTCCGGTCAAGCGACCATCAATTAAATT
CACGTGTAGAGTCAGCCGACGATTTGGATATTTTATAATTAATAACTTCC
TAATCAGCATCCTATTATGCCTATTAGCCTTTTCAAGCTTGGCAGTTTCT
CCACAAAATACATTCGGCCGACTTCAACTTTGTATGATAATTCTTTTGAC
TACAGTTACATTCAAAGTGGCTGTATCACAAAATCTTCCAAAAATATCCT
ATTTAACATATTTGGATAAAGCAATATTGGGAAATATTGTAATTATTATT
TGTCTATGTATTTGGCATGCGGTAATATCGCATATGTTTGAAGATGCAAT
TTTCCAAAACTCTACGGCAACAGAACTTTCGAATACTCGGCAACAGATTT
TGAATTTAAGGCATCAAGAAAATATACTCTTGATCACATTTATCCTTGGT
TACAGCTTCGTTGTTTTATTGTTTATCTTAATAATATATTTTGATGCTGG
TGCTAGGAGAAAAAAAATGCACTTAAAAGACAAGCAATTCATGAAAAAAC
TTGAACAATTATATGATGATCAAAAGCATCAACCTATTTCCAGTTCATTA
ATTCCGTTTTTCGCCAGCAAAACTGTATAAAAATTACTCTTTT
back to top

protein sequence of SMED30009082-orf-1

>SMED30009082-orf-1 ID=SMED30009082-orf-1|Name=SMED30009082-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=404bp
MTKRNSIFNVKRYQTAKLDILPKMVQIMRSRGKKNNVIVRCVFIKISHVD
TVNERYYADVFLEAKWSDPSLENGKNEENEEDFSKYWNPRMYIENCFGEI
KETISREIVFYSEEPTKGFIIEKHRIKAMFHETLELRQFPFDCQDLSIIL
TSELSYDELEFSESSTELSRINEHAEVDSQEWDLHKHVEVSITDILSDCN
VGPVKRPSIKFTCRVSRRFGYFIINNFLISILLCLLAFSSLAVSPQNTFG
RLQLCMIILLTTVTFKVAVSQNLPKISYLTYLDKAILGNIVIIICLCIWH
AVISHMFEDAIFQNSTATELSNTRQQILNLRHQENILLITFILGYSFVVL
LFILIIYFDAGARRKKMHLKDKQFMKKLEQLYDDQKHQPISSSLIPFFAS
KTV*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: molecular function
TermDefinition
GO:0004888transmembrane signaling receptor activity
GO:0005216ion channel activity
GO:0005230extracellular ligand-gated ion channel activity
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000418head
Vocabulary: INTERPRO
TermDefinition
IPR036734Neur_chan_lig-bd_sf
IPR006201Neur_channel
IPR036719Neuro-gated_channel_TM_sf
IPR006202Neur_chan_lig-bd
IPR006029Neurotrans-gated_channel_TM
Vocabulary: biological process
TermDefinition
GO:0006810transport
GO:0006811ion transport
GO:0034220ion transmembrane transport
Vocabulary: cellular component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 399..403
NoneNo IPR availableGENE3DG3DSA:1.20.58.390coord: 215..373
e-value: 9.3E-19
score: 69.6
NoneNo IPR availablePANTHERPTHR18945:SF768coord: 32..318
NoneNo IPR availableCDDcd18988LGIC_ECD_bactcoord: 37..184
e-value: 5.80497E-14
score: 67.703
NoneNo IPR availableCDDcd19050LGIC_TM_bactcoord: 221..308
e-value: 1.2684E-11
score: 59.1442
NoneNo IPR availableTMHMMTMhelixcoord: 251..273
NoneNo IPR availableTMHMMTMhelixcoord: 219..241
NoneNo IPR availableTMHMMTMhelixcoord: 285..307
NoneNo IPR availableTMHMMTMhelixcoord: 336..358
IPR006202Neurotransmitter-gated ion-channel ligand-binding domainPFAMPF02931Neur_chan_LBDcoord: 31..218
e-value: 8.4E-10
score: 38.5
IPR036734Neurotransmitter-gated ion-channel ligand-binding domain superfamilyGENE3DG3DSA:2.70.170.10coord: 28..212
e-value: 6.9E-19
score: 70.1
IPR036734Neurotransmitter-gated ion-channel ligand-binding domain superfamilySUPERFAMILYSSF63712Nicotinic receptor ligand binding domain-likecoord: 32..199
IPR006201Neurotransmitter-gated ion-channelPANTHERPTHR18945NEUROTRANSMITTER GATED ION CHANNELcoord: 32..318
IPR036719Neurotransmitter-gated ion-channel transmembrane domain superfamilySUPERFAMILYSSF90112Neurotransmitter-gated ion-channel transmembrane porecoord: 220..307