Neur_chan_LBD domain-containing protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30009082 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 3
Homology
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Fly
Match: CG6927 (gene:FBgn0029733 transcript:FBtr0070721) HSP 1 Score: 49.2914 bits (116), Expect = 4.635e-6 Identity = 57/211 (27.01%), Postives = 97/211 (45.97%), Query Frame = 3 Query: 327 WNPRMYIENCFGEIKETISREIVFYSEEPTKGFIIEKHRIKAMFHETLELRQFPFDCQDLSIILTSELSYDXXXXXXXXXXXXRINEHAEVDSQEWDLHKHV--EVSITDILSDCNVGPVKR--PSIKFTCRVSRRFGYXXXXXXXXXXXXXXXXXXXXXVSPQNTFGRLQLCMIILLTTVTFKVAVSQNLPKISYLTYLDKAILGNIVII 947 W P +++ N ++ + + S P G +I +RIKA + L L++FPFD Q S +L S + Y+ E + I + E+ L + E I LSD G S+ FT ++R G+++++ FL S+L+ +++ S + R+ L LLT +T A + LPK+SY+ + LG + I Sbjct: 127 WMPHIFLANERDSSILGLTEKDILTSISP-DGTVIVSNRIKATLYCWLNLKKFPFDEQHCSTVLESWM-YNTSELVLHWEQKRPITYDGALHLTEFVLQRSWSNETVINADLSDLRHGAFAGNYSSLSFTVHLTRVVGFYLMDYFLPSMLIVAISWVSFWLQADQAPPRITLGTSTLLTFITLASAQGKTLPKVSYIKVSEVWFLGCTIFI 335
BLAST of Neur_chan_LBD domain-containing protein vs. TrEMBL
Match: R7VF52 (Neur_chan_LBD domain-containing protein OS=Capitella teleta OX=283909 GN=CAPTEDRAFT_228357 PE=3 SV=1) HSP 1 Score: 213.001 bits (541), Expect = 3.442e-61 Identity = 135/360 (37.50%), Postives = 207/360 (57.50%), Query Frame = 3 Query: 177 VIVRCVFIKISHVDTVNERYYADVFLEAKWSDPSLENGKNEENEE-DFSKYWNPRMYIENCFGEIKETISREIVFYSEEPTKGFIIEKHRIKAMFHETLELRQFPFDCQDLSIILTSELSYDXXXXXXXXXXXXRINEHAEVDSQEWDLHKHVEVSITDILSDCNVGPVKRPSIKFTCRVSRRFGYXXXXXXXXXXXXXXXXXXXXXVSPQNTFGRLQLCMIILLTTVTFKVAVSQNLPKISYLTYLDKAILGNIVIIICLCIWHAVISHMFEDAIFQNSTATELSNTRQQILNLRHQENILLITFILGYSFVVLLFILIIYFDAGARRKKMHLKDKQFM----KKLEQLYDDQKHQPIS 1241 V +R VF+KI +DT+ E+Y AD F++AKW +P+L+ EE + D ++WNP ++IEN E KE + + + + F++E+ R++ +F E LEL FP D QDL++ +TSE E++ E+S IN VD QEW LH+H+EVS + + + P++ TCR +RR GYF N FL+ + L+F++ AVSP+ RLQL +LLT++TFK ++Q+LPKISYLTY+DK +L ++VI+ +C+WHAV++ I ++ L E + I F + Y ++FI +YFDA RR+ M KDK+++ KK E L + P S Sbjct: 34 VELRVVFLKIGEIDTLKEQYSADTFIQAKWREPALDGKTTEELKRIDLDRFWNPLLFIENVLSETKE--ATWLTASTNSRAEAFVLERRRVRGVFMENLELNDFPLDVQDLTVTITSERPDTEIDIIPDENEMSGINVQTFVDQQEWRLHEHIEVSKKVMTQEYSSSNRCHPALSVTCRAARRPGYFYWNVFLVMFFISALSFATFAVSPELPQNRLQLSFTLLLTSITFKFVINQSLPKISYLTYMDKYVLLSLVILCMVCVWHAVVTVFVHHGI-------------NFLMTL---ERDVFIAFSVIYIGFHVVFIFWLYFDACKRRRLMKHKDKEYLDFLAKKKEWLEKTKDLNPQS 375
BLAST of Neur_chan_LBD domain-containing protein vs. TrEMBL
Match: A0A3R7CFX9 (Neuronal acetylcholine receptor subunit alpha-7 OS=Clonorchis sinensis OX=79923 GN=CHRNA7 PE=4 SV=1) HSP 1 Score: 212.616 bits (540), Expect = 1.228e-60 Identity = 143/378 (37.83%), Postives = 217/378 (57.41%), Query Frame = 3 Query: 192 VFIKISHVDTVNERYYADVFLEAKWSDPSLE----NGKNEENEEDF-----------------------SKYWNPRMYIENCFGEIKETISREIVFYSEEPTKGFIIEKHRIKAMFHETLELRQFPFDCQDLSIILTSELSYDXXXXXXXXXXXXRINEHAEVDSQEWDLHKHVEVSITDILSDCNVGPVKR--PSIKFTCRVSRRFGYXXXXXXXXXXXXXXXXXXXXXVSPQNTFGRLQLCMIILLTTVTFKVAVSQNLPKISYLTYLDKAILGNIVIIICLCIWHAVISHMFEDAIFQNSTATELSNTRQQILNLRHQENILLITFILGYSFVVLLFILIIYFDAGARRKKMHLKDKQFMKKLEQLYDDQKHQPI 1238 +F+KI VDTVNERY AD+FL+A+W +P L+ + N F ++WNPR+ ++N GE E +S E+ F E + +++EK RIK +FHETLEL+ FPFDCQDLS+ +T + + +E+E S TE+S+++ DSQEW + HV+++ +I + + G KR P + FT R +RR GYF++N LIS +L LL+FS +V RLQL +++LLTTVTFK A SQNLPKISYLTYLDK +L N +++ L +WH + +F + L+ +E ++ T + Y ++F L +Y DAG+RR+ M KD F + +++ +++H+ I Sbjct: 44 IFVKIGQVDTVNERYQADIFLQARWREPLLDATWNTSRPRNNFRTFKMVENPVMELAPKRHLHTLKLQDDEFWNPRLLLDNAQGEPIEIVSHEVEFV-EPDFEAYLVEKRRIKGVFHETLELKHFPFDCQDLSVTVTCDRTVEEVELVPSPTEVSQVDRRCAADSQEWKIFHHVDIASMEIQTAYSPGTCKRRHPGLVFTSRSARRAGYFMVNMALISCVLSLLSFSVFSVPVDG--NRLQLSLLLLLTTVTFKFAASQNLPKISYLTYLDKMVLANFFMLVILTVWHTIARSVF-----------------AKYPGLKDKEQYVVYTLLSAYCLGAVVFGLTVYLDAGSRRRLMKSKDMDFTQHKQRIELEKQHKSI 401
BLAST of Neur_chan_LBD domain-containing protein vs. TrEMBL
Match: A0A4E0RSR9 (Uncharacterized protein OS=Fasciola hepatica OX=6192 GN=D915_005714 PE=4 SV=1) HSP 1 Score: 209.534 bits (532), Expect = 1.062e-59 Identity = 145/363 (39.94%), Postives = 212/363 (58.40%), Query Frame = 3 Query: 192 VFIKISHVDTVNERYYADVFLEAKWSDPSLE-NGKNEENEEDF--------------------------SKYWNPRMYIENCFGEIKETISREIVFYSEEPT-KGFIIEKHRIKAMFHETLELRQFPFDCQDLSIILTSELSYDXXXXXXXXXXXXRINEHAEVDSQEWDLHKHVEVSITDILSDCNVGPVKR--PSIKFTCRVSRRFGYXXXXXXXXXXXXXXXXXXXXXVSPQNTFGRLQLCMIILLTTVTFKVAVSQNLPKISYLTYLDKAILGNIVIIICLCIWHAVISHMFEDAIFQNSTATELSNTRQQILNLRHQENILLITFILGYSFVVLLFILIIYFDAGARRKKMHLKDKQF 1190 +F+KI VDTVNERY AD+FL+A+W +P L+ K+E ++++ ++WNPR+ ++N GE E +S E+ F EPT + +++EK RIK +FHETLEL+ FPFD QDLS+ +T + S DE+ S TE+S+++ DSQEW + HV+V +I + + G KR P + FT R +RR GYF++N LIS +LCLL+F +V RLQ +++LLTTVTFK A SQNLPKISYLTYLDK +L N +++ L +WH + A LS + ++L+ E ++ T + Y ++F L +Y DAG+RR+ M KD +F Sbjct: 3 IFVKIGQVDTVNERYQADIFLQARWREPLLDATWKSERAQKNWRGKSGVENPIQDLVPKRHLHTLGLQDDEFWNPRLLLDNAQGEPIEIVSHEVEFV--EPTFEAYLVEKRRIKGVFHETLELKHFPFDVQDLSVTVTCDRSVDEVLLVPSPTEVSQVDRRGAADSQEWKIFHHVDVERMEIQTAYSPGTSKRRHPGLVFTSRSARRSGYFMVNMVLISCVLCLLSFCIFSVPVDG--NRLQQALLLLLTTVTFKFAASQNLPKISYLTYLDKVVLANFFMLVILTVWHTI--------------ARSLSASYPKLLD---NEKYVVYTLLSSYCLGAVIFGLTVYLDAGSRRRLMQRKDVEF 344
BLAST of Neur_chan_LBD domain-containing protein vs. TrEMBL
Match: A0A075A8W6 (Uncharacterized protein OS=Opisthorchis viverrini OX=6198 GN=T265_08254 PE=3 SV=1) HSP 1 Score: 213.001 bits (541), Expect = 6.637e-59 Identity = 148/401 (36.91%), Postives = 225/401 (56.11%), Query Frame = 3 Query: 123 DILPKMVQIMRSRGKKNNVIVRCVFIKISHVDTVNERYYADVFLEAKWSDPSLE----NGKNEENEEDFS-----------------------KYWNPRMYIENCFGEIKETISREIVFYSEEPTKGFIIEKHRIKAMFHETLELRQFPFDCQDLSIILTSELSYDXXXXXXXXXXXXRINEHAEVDSQEWDLHKHVEVSITDILSDCNVGPVKR--PSIKFTCRVSRRFGYXXXXXXXXXXXXXXXXXXXXXVSPQNTFGRLQLCMIILLTTVTFKVAVSQNLPKISYLTYLDKAILGNIVIIICLCIWHAVISHMFEDAIFQNSTATELSNTRQQILNLRHQENILLITFILGYSFVVLLFILIIYFDAGARRKKMHLKDKQFMKKLEQLYDDQKHQPI 1238 D L +M + R V + +F+KI VDTVNERY AD+FL+A+W +P L+ + N F+ ++WNPR+ ++N GE E +S E+ F E + +++EK RIK +FHETLEL+ FPFDCQDLS+ +T + + +E+E S TE+S+++ DSQEW + HV+++ +I + + G KR P + FT R +RR GYF++N LIS +L LL+FS +V RLQL +++LLTTVTFK A SQNLPKISYLTYLDK +L N +++ L +WH + +F + L+ +E ++ T + Y ++F L +Y DAG+RR+ M KD F + +++ ++H+ I Sbjct: 221 DELSQMKHLEPVRHPPARVELMLIFVKIGQVDTVNERYQADIFLQARWREPLLDATWNTSRPRNNFRTFNMVENPVMELAPKRHLHTLKLQDDEFWNPRLLLDNAQGEPIEIVSHEVEFV-EPDFEAYLVEKRRIKGIFHETLELKHFPFDCQDLSVTVTCDRTVEEVELVPSPTEVSQVDRRCAADSQEWKIFHHVDIASMEIQTAYSPGTCKRRHPGLVFTSRSARRAGYFMVNMALISCVLSLLSFSVFSVPVDG--NRLQLSLLLLLTTVTFKFAASQNLPKISYLTYLDKMVLANFFMLVILTVWHTIARSVFA-----------------KYPGLKDKEQYVVYTLLSAYCLGAVVFGLTVYLDAGSRRRLMKSKDMDFTQHKQRIELAKQHKSI 601
BLAST of Neur_chan_LBD domain-containing protein vs. TrEMBL
Match: A0A210Q143 (Cys-loop ligand-gated ion channel OS=Mizuhopecten yessoensis OX=6573 GN=KP79_PYT24637 PE=3 SV=1) HSP 1 Score: 206.453 bits (524), Expect = 9.284e-59 Identity = 139/368 (37.77%), Postives = 216/368 (58.70%), Query Frame = 3 Query: 114 AKLDILPKMVQIMRSRGKKNNVIVR-CV-FIKISHVDTVNERYYADVFLEAKWSDPSLENGKNEENEE-DFSKYWNPRMYIENCFGEIKETISREIVFYSEEPTKGFIIEKHRIKAMFHETLELRQFPFDCQDLSIILTSELSYDXXXXXXXXXXXXRINEHAEVDSQEWDLHKHVEVSITDILSDCNVGPVKRPSIKFTCRVSRRFGYXXXXXXXXXXXXXXXXXXXXXVS---PQNTFGRLQLCMIILLTTVTFKVAVSQNLPKISYLTYLDKAILGNIVIIICLCIWHAVISHMFEDAIFQNSTATELSNTRQQILNLRHQENILLITFILGYSFVVLLFILIIYFDAGARRKKMHLKDKQFMKK 1199 A + M +RS V V+ CV F K+ +DT+ E+Y ADV ++AKW +PSL+ G+N+ +E +F+K WNP++YIEN G+ KE I ++++ + + ++ EK IK F E LEL FPFD QD++I + SEL E+E E + +N+ A VD QEW L+ H E DI+ D V+R ++ CR +RR GYF+ N F+++ L+C LAF++ +V+ PQN RLQL ++LT V FK AV+ +LP+ISYLTY+DK +L +V++ +C+WHA++S + AT+ R +I E+++L Y F + F ++IY +R++M KDK++ K Sbjct: 2 ATYSAMKSMWYFIRSTASSFQVKVKICVQFFKVGEIDTLKEQYTADVIVKAKWREPSLD-GQNKTSESVEFNKMWNPKLYIENSLGDPKEQIRYQVLY--NDKGEAYVSEKRVIKGTFMENLELDDFPFDVQDITITVASELPSSEVELIEDDDDHHVVNKQAFVDEQEWHLYMHTECVKRDIVIDQADMSVRRSALSVKCRAARRPGYFVWNIFVVTFLICSLAFTTFSVNNNLPQN---RLQLSFTLVLTAVAFKSAVNSSLPRISYLTYMDKYLLIAMVMLTAVCVWHAIVSTL----------ATQ--EKRDRI------ESVVLTVLAAIYIFYNIGFFIVIYVSPWKKRREMQQKDKEYQMK 345
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Cavefish
Match: gabrg1 (gamma-aminobutyric acid type A receptor gamma1 subunit [Source:NCBI gene;Acc:103030074]) HSP 1 Score: 48.9062 bits (115), Expect = 7.775e-6 Identity = 79/354 (22.32%), Postives = 144/354 (40.68%), Query Frame = 3 Query: 87 IFNVKRYQTAKLDILPKMVQIMRSR-----GKKNNVIVRCVFI-KISHVDTVNERYYADVFLEAKWSDPSLENGKNEE----NEEDFSKYWNPRMYIENCFGEIKETIS---REIVFYSEEPTKGFIIEKHRIKAMFHETLELRQFPFDCQDLSIILTSELSYDXXXXXXXXXXXXRINEHAEVDSQEWDLHKHVEVSI--TDILSDCNVGPVKRPSIKFTCRVSRRFGYXXXXXXXXXXXXXXXXXXXXXVSPQNTFGRLQLCMIILLTTVTFKVAVSQNLPKISYLTYLDKAILGNIVIIICLCIWHAVISHMFEDAIFQNSTATELSNTRQQILNLRHQENILLITFILGY 1103 + + K Y++ IL K++Q ++ G K +I V++ I VD +N Y D+F W D L+ + + N K W P + N I+ R + +S G ++ R+ L+L FP D + +S Y + SR + A D + W L++ V + T ++ G SI FT +SRR GYF I ++ ++ +L++ S ++ R L + +LT T ++LPK+SY+T +D + + + + + + + QN S + ++N+R ++L + I Y Sbjct: 44 VLSPKVYESDVTLILNKLLQGYDNKLRPDIGVKPTLIDAAVYVNSIGPVDPINMEYTIDIFFAQSWYDSRLQFNSSMKVLMLNSNMVGKIWIPDTFFRNSRKSDAHWITTPNRLLRLWSN----GRVMYTLRLTINAECYLKLHNFPMDEHSCPLEFSS---YGYPKNEIEYKWHSRAVQVA--DQRYWRLYQFAFVGLQNTTGIAHTQSGDYVVMSILFT--LSRRMGYFTIQTYIPCSMIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTISRKSLPKVSYVTAMDLFVSVCFIFTFAALMEYGTLHYFTSNR--QNKKTKTNSAPKSSMVNIRPGTSLLQMNNIAPY 384
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Nematostella
Match: EDO32790 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SU26]) HSP 1 Score: 103.605 bits (257), Expect = 2.499e-24 Identity = 80/271 (29.52%), Postives = 139/271 (51.29%), Query Frame = 3 Query: 168 KNNVIVRCVFIKISHVDTVNERYYADVFLEAKWSDPSLENGKNEENEEDFSKYWNPRMYIENCFGEIKETISREIVFYSEEPTKGFIIEKHRIKAMFHETLELRQFPFDCQDLSIILTSELSYDXXXXXXXXXXXXRINEHAEVDSQEWDLHKHVEVSITDILSDCNVGPVKR--PSIKFTCRVSRRFGYXXXXXXXXXXXXXXXXXXXXXVSPQNTFGRLQLCMIILLTTVTFKVAVSQNLPKISYLTYLDKAILGNIVIIICLCIWHAV 974 K V++RC + +D + +++ ++++ A W +P L KNEE + D W+P++ N + R + +Y E T E ++I+ F E L QFP D Q+LSII++S+ S + F + + + + ++W L+ HV T +GP R P T V RR ++ N ++ +L L+F+S A+ PQ T RL + +++LL +V +K S +LP+ SYLT+LDK LGN++ I + + + + Sbjct: 15 KVTVLIRCGISFLGDIDVIRQQFTCELWMTASWREPKLAGKKNEEVKWD--NEWSPKISFSNSLLLDRVYKGRRL-YYEENSTVPLAQEVYKIRGTFKEQFSLEQFPVDLQELSIIISSDWSDRTVTFEKDMAKPDYLRQQTFSSPRDWVLYPHVHTD-TATQEGEGLGPNDRSYPVYIITAHVRRRAVHYFWNTAVVMSVLTALSFASFAIPPQQTADRLTVTLLLLLISVAYKFVTSLHLPRTSYLTFLDKYQLGNLLFISFIAVLNTI 281
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Nematostella
Match: EDO37396 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SFV7]) HSP 1 Score: 57.3806 bits (137), Expect = 4.457e-9 Identity = 68/310 (21.94%), Postives = 128/310 (41.29%), Query Frame = 3 Query: 162 GKKNNVIVRCVFIKISHVDTVNERYYADVFLEAKWSDPSLENGKNEE---NEEDFSKYWNPRMYIENCFGEIKETISREIVFYSEEPTKGFIIEKHRIKAMFHETLELRQFPFDCQDLSIILTSELSYDXXXXXXXXXXXXRINEHAEVDSQE-----------WDLHKHVEVSITDILSDCNVGPVKRPSIKFTCRVSRRFGYXXXXXXXXXXXXXXXXXXXXXVSPQNTFGRLQLCMIILLTTVTFKVAVSQNLPKISYLTYLDKAILGNIVIIICLCIWHAVISHMFEDAIFQNSTATELSNTRQQI 1049 GK V V + + +D VN + D+FL +W DP L++G NE K W P Y N ++ P G + R+ T++LR FP D Q+ ++L S YD S I H E ++ + + V ++++ +G F+ + R + YF+ + + S ++ +++ + P T R+ + + LLT VT ++ ++PK+SY+ +DK ++ ++ + I + VI + ++ T+ +NT + I Sbjct: 56 GKPVVVKVGYWILSVDSIDVVNMDFTVDLFLRQEWVDPRLDHGLNETIYLGHRVMQKIWTPDSYFLNAKTAKMHHVTTPNQMTLIAPM-GVVKYNTRVTVKAACTIDLRSFPMDQQNCPLVLES-YGYD----------RSHIVYHWEGNATDGLPFVPNRMRIMPQYSLVRLTLSREWHQYIIGNFSAVVAVFS--IERSYTYFLTHVYGTSCVIVFISWMGFVIPPDQTAARIAVGVTTLLTQVTVINILNSSMPKVSYVKSIDKFLISCLIFVFLSLIEYCVILILDGKRTRRHQQHTDTANTHETI 351
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Nematostella
Match: EDO37555 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SFG6]) HSP 1 Score: 49.6766 bits (117), Expect = 1.287e-6 Identity = 63/277 (22.74%), Postives = 116/277 (41.88%), Query Frame = 3 Query: 162 GKKNNVIVRCVFIKISHVDTVNERYYADVFLEAKWSDPSLENGKNEE---NEEDFSKYWNPRMYIENCFGEIKETISREIVFYSEEPTKGFIIEKHRIKAMFHETLELRQFPFDCQDLSIILTSELSYDXXXXXXXXXXXXRINEHAEVDSQEWDLHKHVEVSITDILSDCNVG-------PVKRPSIKFTCRVSRRFGYXXXXXXXXXXXXXXXXXXXXXVSPQNTFGRLQLCMIILLTTVTFKVAVSQNLPKISYLTYLDKAILGNIVIIICLCI 962 G V V + I ++ ++ Y D FL W DP L++ ++ + K W P Y N +++ S P G + R+ + LR FP D Q+ +I + S Y + +R + V+ + D+ ++ LSD NV + T R RR GYFII+ + L+ +L++ S + P++T R+ L + +LT T ++ ++PK+SY+ +D ++G + + + + Sbjct: 27 GDPVTVTVGFWVLSIDAINVIDMDYRMDFFLRQLWRDPRLKHRFDDTLALSNTMLDKIWVPDTYFVNSKMSKFHSVTTINKMLSISP-DGLVHYNSRVTVKASCAMNLRMFPKDVQNCNIDIES---YGYSADNVQYQWENRSDNGIAVNKKIRDMPQYN-------LSDINVSRHFTMYVAGNWSGLTATFRFRRRSGYFIIHIYAPCALIVILSWISFCIPPESTAARIALGITSVLTITTILNMLNNSMPKVSYVKAVDWYLIGCFLFVFAVLL 292
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Nematostella
Match: EDO43147 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RZH2]) HSP 1 Score: 48.1358 bits (113), Expect = 2.693e-6 Identity = 56/257 (21.79%), Postives = 103/257 (40.08%), Query Frame = 3 Query: 198 IKISHVDTVNERYYADVFLEAKWSDPSLENGKNEE--NEEDFSK-YWNPRMYIENC----FGEIKETISREIVFYSEEPTKGFIIEKHRIKAMFHETLELRQFPFDCQDLSIILTSELSYDXXXXXXXXXXXXRINEHAEVDSQEWDLHKHVEVSITDILSDCNVGPVKRPSIKFTCRVSRRFGYXXXXXXXXXXXXXXXXXXXXXVSPQNTFGRLQLCMIILLTTVTFKVAVSQNLPKISYLTYLDKAILGNIVII 947 + + ++ + + D+F W +P + +E ED K +W P Y N F ++ + +R I++ S G + R+ + L+ FP D Q + + S Y R + E+ S E VE I + G + F+ + RR YF I +++L +L++ + P R+ L + +L+T+ V+ +PK+SY+ +D +LGN I Sbjct: 37 VSLGGINEASMEFSMDIFFRQWWHEPRFTHNYSEPFTMAEDAGKLFWIPDTYFINAKKSNFHKVTKENARIIIYPS-----GNVYYSVRLTLTLQCNMNLQLFPMDVQACPLFIES---YAYTSEDIKYKWTPRGTKGIEIISNETAQFVLVEARTEQIATAKISGHFSQLVATFSLK--RRLEYFAITVVTPAMILVVLSWCCFWIVPDAIPARISLSVTTILSTLLLSGTVNAQMPKVSYMKAIDVFVLGNFAFI 283
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Nematostella
Match: EDO47783 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RL25]) HSP 1 Score: 48.1358 bits (113), Expect = 3.607e-6 Identity = 57/275 (20.73%), Postives = 114/275 (41.45%), Query Frame = 3 Query: 162 GKKNNVIVRCVFIKISHVDTVNERYYADVFLEAKWSDPSLENGKNEE---NEEDFSKYWNPRMYIENCFGEIKETISREIVFYSEEPTKGFIIEKHRIKAMFHETLELRQFPFDCQDLSIILTSELSYDXXXXXXXXXXXXRINEHAEVDSQEWDLHKHVEVSITDILSDCNVGPVKRPSIKFTCRVSRRFGYXXXXXXXXXXXXXXXXXXXXXVSPQNTFGRLQLCMIILLTTVTFKVAVSQNLPKISYLTYLDKAILGNIVIIICLCIWHAVI 977 G V V + I ++ ++ + D+FL +W D L++ NE + K W P Y N T++ + P G + R+ + +ELR FP D Q ++ S D ++ I E ++ Q + EV+++ + VG +K T R + YFI + + S ++ ++++ + R+ L + +LT VT +S + K++Y+ +D+ ++G + + C I ++ + Sbjct: 23 GHPVVVTVGFTLLSIDTINVIDMDFSMDMFLRQEWYDQRLDHKTNETVFLSNHVMDKIWLPDSYFVNAKDAKFHTVTTDNKMIMLSP-GGRVQYNARVSVRLYCDMELRDFPMDTQYCPVVFESYGYSDRHITFVWELGMNTIPERLKILPQ----YNLKEVALSTTYNVYVVG--NWSGVKATFAFERTYSYFIYHVYAPSAIIVVISWIGFVLPRDKPPARITLGVTSVLTIVTVLNMLSNTVAKVNYVKRIDEYLIGCFLFVFCSLIEYSFV 290
BLAST of Neur_chan_LBD domain-containing protein vs. Planmine SMEST
Match: SMESG000031120.1 (SMESG000031120.1) HSP 1 Score: 731.865 bits (1888), Expect = 0.000e+0 Identity = 402/403 (99.75%), Postives = 403/403 (100.00%), Query Frame = 3 Query: 69 MTKRNSIFNVKRYQTAKLDILPKMVQIMRSRGKKNNVIVRCVFIKISHVDTVNERYYADVFLEAKWSDPSLENGKNEENEEDFSKYWNPRMYIENCFGEIKETISREIVFYSEEPTKGFIIEKHRIKAMFHETLELRQFPFDCQDLSIILTSELSYDXXXXXXXXXXXXRINEHAEVDSQEWDLHKHVEVSITDILSDCNVGPVKRPSIKFTCRVSRRFGYXXXXXXXXXXXXXXXXXXXXXVSPQNTFGRLQLCMIILLTTVTFKVAVSQNLPKISYLTYLDKAILGNIVIIICLCIWHAVISHMFEDAIFQNSTATELSNTRQQILNLRHQENILLITFILGYSFVVLLFILIIYFDAGARRKKMHLKDKQFMKKLEQLYDDQKHQPISSSLIPFFASKTV 1277 MTKRNSIFNVKRYQTAKLDILPKMVQIMRSRGKKNNVIVRCVFIKISHVDTVNERYYADVFLEAKWSDPSLENGKNEENEEDFSKYWNPRMYIENCFGEIKETISREIVFYSEEPTKGFIIEKHRIKAMFHETLELRQFPFDCQDLSIILTSELSYDELEFSESSTELSRINEHAEVDSQEWDLHKHVEVSITDILSDCNVGPVKRPSIKFTCRVSRRFGYFIINNFLISILLCLLAFSSLAVSPQNTFGRLQLCMIILLTTVTFKVAVSQNLPKISYLTYLDKAILGNIVIIICLCIWHAVISHMFEDAIFQNSTATELSNTRQQILNLRHQENILLITFILGYSFVVLLFIL+IYFDAGARRKKMHLKDKQFMKKLEQLYDDQKHQPISSSLIPFFASKTV Sbjct: 1 MTKRNSIFNVKRYQTAKLDILPKMVQIMRSRGKKNNVIVRCVFIKISHVDTVNERYYADVFLEAKWSDPSLENGKNEENEEDFSKYWNPRMYIENCFGEIKETISREIVFYSEEPTKGFIIEKHRIKAMFHETLELRQFPFDCQDLSIILTSELSYDELEFSESSTELSRINEHAEVDSQEWDLHKHVEVSITDILSDCNVGPVKRPSIKFTCRVSRRFGYFIINNFLISILLCLLAFSSLAVSPQNTFGRLQLCMIILLTTVTFKVAVSQNLPKISYLTYLDKAILGNIVIIICLCIWHAVISHMFEDAIFQNSTATELSNTRQQILNLRHQENILLITFILGYSFVVLLFILVIYFDAGARRKKMHLKDKQFMKKLEQLYDDQKHQPISSSLIPFFASKTV 403
BLAST of Neur_chan_LBD domain-containing protein vs. Planmine SMEST
Match: SMESG000031120.1 (SMESG000031120.1) HSP 1 Score: 487.263 bits (1253), Expect = 6.654e-173 Identity = 283/285 (99.30%), Postives = 283/285 (99.30%), Query Frame = 3 Query: 69 MTKRNSIFNVKRYQTAKLDILPKMVQIMRSRGKKNNVIVRCVFIKISHVDTVNERYYADVFLEAKWSDPSLENGKNEENEEDFSKYWNPRMYIENCFGEIKETISREIVFYSEEPTKGFIIEKHRIKAMFHETLELRQFPFDCQDLSIILTSELSYDXXXXXXXXXXXXRINEHAEVDSQEWDLHKHVEVSITDILSDCNVGPVKRPSIKFTCRVSRRFGYXXXXXXXXXXXXXXXXXXXXXVSPQNTFGRLQLCMIILLTTVTFKVAVSQNLPKISYLTYLDKA 923 MTKRNSIFNVKRYQTAKLDILPKMVQIMRSRGKKNNVIVRCVFIKISHVDTVNERYYADVFLEAKWSDPSLENGKNEENEEDFSKYWNPRMYIENCFGEIKETISREIVFYSEEPTKGFIIEKHRIKAMFHETLELRQFPFDCQDLSIILTSELSYDELEFSESSTELSRINEHAEVDSQEWDLHKHVEVSITDILSDCNVGPVKRPSIKFTCRVSRRFGYFIINNFLISILLCLLAFSSLAVSPQNTFGRLQLCMIILLTTVTFKVAVSQNLPKISYLTYL A Sbjct: 1 MTKRNSIFNVKRYQTAKLDILPKMVQIMRSRGKKNNVIVRCVFIKISHVDTVNERYYADVFLEAKWSDPSLENGKNEENEEDFSKYWNPRMYIENCFGEIKETISREIVFYSEEPTKGFIIEKHRIKAMFHETLELRQFPFDCQDLSIILTSELSYDELEFSESSTELSRINEHAEVDSQEWDLHKHVEVSITDILSDCNVGPVKRPSIKFTCRVSRRFGYFIINNFLISILLCLLAFSSLAVSPQNTFGRLQLCMIILLTTVTFKVAVSQNLPKISYLTYLAGA 285 HSP 2 Score: 94.3597 bits (233), Expect = 2.573e-21 Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 3 Query: 1146 AGARRKKMHLKDKQFMKKLEQLYDDQKHQPISSSLIPFFASKTV 1277 AGARRKKMHLKDKQFMKKLEQLYDDQKHQPISSSLIPFFASKTV Sbjct: 283 AGARRKKMHLKDKQFMKKLEQLYDDQKHQPISSSLIPFFASKTV 326
BLAST of Neur_chan_LBD domain-containing protein vs. Planmine SMEST
Match: SMESG000041740.1 (SMESG000041740.1) HSP 1 Score: 345.51 bits (885), Expect = 1.386e-116 Identity = 190/350 (54.29%), Postives = 251/350 (71.71%), Query Frame = 3 Query: 177 VIVRCVFIKISHVDTVNERYYADVFLEAKWSDPSLENGKNEENEEDFSKYWNPRMYIENCFGEIKETISREIVFYSEEPTKGFIIEKHRIKAMFHETLELRQFPFDCQDLSIILTSELSYDXXXXXXXXXXXXRINEHAEVDSQEWDLHKHVEVSITDILSDCNVGPVKRPSIKFTCRVSRRFGYXXXXXXXXXXXXXXXXXXXXXVSPQNTFGRLQLCMIILLTTVTFKVAVSQNLPKISYLTYLDKAILGNIVIIICLCIWHAVISHMFEDAIFQNSTATELSNTRQQILNLRHQENILLITFILGYSFVVLLFILIIYFDAGARRKKMHLKDKQFMKKLEQLYDDQK 1226 V +RCVF+KI VDTVNE Y A++FL+AKW +P L+N K E D SK+WNPR+ IEN F E ET+ E V Y E+ F+++K R+KA+FHETLEL QFPFDCQDLS+ ++SE S DE+E E T++S++N V+SQEWDLH HV+V I I++DCN+GP +R SI FTCR RRFGYF++N+FLIS + L F S +V NTFGRLQLCMI LLT+VTFKVAVS NLPK+ YLTYLDKAILGNI +I+CLC+WHA S F D ST + N I ++ E L+ ++ Y V++F L+IYFDAG+RR++MHLKD +F +K+++L ++++ Sbjct: 16 VFIRCVFLKIFQVDTVNEYYNAEIFLQAKWREPILDN-KLETKNIDLSKFWNPRLVIENLFKENNETVLLE-VSYVEKEGVAFVVQKRRVKAIFHETLELNQFPFDCQDLSVTVSSEYSSDEVELVEFPTDISKLNSSDAVESQEWDLHSHVDVEIKRIITDCNIGPKERTSITFTCRAGRRFGYFLVNHFLISCMFFFLTFCSFSVISSNTFGRLQLCMITLLTSVTFKVAVSNNLPKVPYLTYLDKAILGNIFMIMCLCLWHAATSVYFYD-----STTLQSINDSIAIEKVKQVEKYLIPALLIFYVTAVVVFALVIYFDAGSRRREMHLKDIEFEQKIKRLKNEER 358
BLAST of Neur_chan_LBD domain-containing protein vs. Planmine SMEST
Match: SMESG000041696.1 (SMESG000041696.1) HSP 1 Score: 345.125 bits (884), Expect = 1.456e-116 Identity = 196/360 (54.44%), Postives = 261/360 (72.50%), Query Frame = 3 Query: 159 RGKKNNVIVRCVFIKISHVDTVNERYYADVFLEAKWSDPSLENGKNEENEEDFSKYWNPRMYIENCFGEIKETISREIVFYSEEPTKGFIIEKHRIKAMFHETLELRQFPFDCQDLSIILTSELSYDXXXXXXXXXXXXRINEHAEVDSQEWDLHKHVEVSITDILSDCNVGPVKRPSIKFTCRVSRRFGYXXXXXXXXXXXXXXXXXXXXXVSPQNTFGRLQLCMIILLTTVTFKVAVSQNLPKISYLTYLDKAILGNIVIIICLCIWHAVISHMFEDAIFQNSTATELSNTRQQILN-LRHQENILLITFILGYSFVVLLFILIIYFDAGARRKKMHLKDKQFMKKL-----EQLYDD 1220 + ++ V +RCVF+KI HVDTVNE + A++FL++KW +PSL+N K+ +++E SK WNP+++IEN + E K+T+ RE V Y ++ ++IEK RI A+FHETLEL+QFPFDCQDLSI++++ELS DE+ F E ++S++N +DSQEWDLH HV+V I +++SDCN+GP KR +I FTCR SRRFGYFI+N+ LIS + LL F S AV NT GRLQLCMIILLT+VTFKVAVS+NLPKI YLTYLDKA+LGNI +I+CLC+WHA S F D N T ++L +R E IL+ + ++ Y F + +F LIIYFDAG RRK M KD +F KK+ E+LY D Sbjct: 3 KKRQIRVYIRCVFVKIFHVDTVNEHFSAEIFLQSKWREPSLDNVKDFKSKE-ISKLWNPKIHIENIYKENKQTVVRE-VHYPDKKGSAYMIEKRRINAIFHETLELKQFPFDCQDLSIVVSTELSADEMIFVEYPNDISKLNLSDAIDSQEWDLHSHVDVEIKEVISDCNIGPEKRYTITFTCRASRRFGYFILNHMLISSMFVLLTFCSFAVISNNTHGRLQLCMIILLTSVTFKVAVSENLPKIPYLTYLDKAVLGNIFMIMCLCMWHAATSIFFYDFKTLNYI------TENRVLEVIRKIEMILIPSLLVFYLFSIFIFGLIIYFDAGNRRKLMKSKDIEFEKKIIKMNNEELYCD 354
BLAST of Neur_chan_LBD domain-containing protein vs. Planmine SMEST
Match: SMESG000064442.1 (SMESG000064442.1) HSP 1 Score: 323.939 bits (829), Expect = 3.471e-108 Identity = 184/341 (53.96%), Postives = 243/341 (71.26%), Query Frame = 3 Query: 183 VRCVFIKISHVDTVNERYYADVFLEAKWSDPSLENGKNEENEEDFSKYWNPRMYIENCFGEIKETISREIVFYSEEPTKGFIIEKHRIKAMFHETLELRQFPFDCQDLSIILTSELSYDXXXXXXXXXXXXRINEHAEVDSQEWDLHKHVEVSITDILSDCNVGPVKRPSIKFTCRVSRRFGYXXXXXXXXXXXXXXXXXXXXXVSPQNTFGRLQLCMIILLTTVTFKVAVSQNLPKISYLTYLDKAILGNIVIIICLCIWHAVISHMFEDAIFQNSTATELSNTRQQILNLRHQENILLITFILGYSFVVLLFILIIYFDAGARRKKMHLKDKQFMKKLE 1205 +RCVF+KI VDTVNE YYAD+FL++KW +P L+ K+ +++ D WNP++++EN + E + T S E V++ + ++IEK RI FHETLEL+QFPFDCQDLSI ++SE S +E++ ES T+LS +N +EV+SQEW++H HVEVS ++++CN+GP + I FTCR SRRF YF+IN+ LIS++LCLL F S AV P NT GRLQLCMIILLTTVTFKVAVSQNLPKI YLTYLDKAILGNI +I+CLC+WHA+ S F + Q S +I N+R E ++ + Y + +F L IYFDAG RR+ M LKD +F KKL+ Sbjct: 18 IRCVFVKICQVDTVNEVYYADIFLQSKWREPLLD--KSLDSQVDLKNLWNPKLFVENLYKENQNTTSLE-VYFPDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSSECSIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILGNIFVIMCLCLWHALTSIFFLNQNLQKS----------KIENIRKIECFIIPILLTSYIMAIFVFGLAIYFDAGKRRRLMKLKDLEFGKKLK 345 The following BLAST results are available for this feature:
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 1
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of Neur_chan_LBD domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of Neur_chan_LBD domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 5
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of Neur_chan_LBD domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30009082 ID=SMED30009082|Name=Neur_chan_LBD domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1293bpback to top protein sequence of SMED30009082-orf-1 >SMED30009082-orf-1 ID=SMED30009082-orf-1|Name=SMED30009082-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=404bp MTKRNSIFNVKRYQTAKLDILPKMVQIMRSRGKKNNVIVRCVFIKISHVDback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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