SMED30009071

Overview
NameSMED30009071
Smed IDSMED30009071
Length (bp)1252
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30009071 (SMED30009071) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30009071 (SMED30009071) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30009071 (SMED30009071) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30009071 (SMED30009071) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30009071

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 8

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30009071SMESG000017123.1 SmedASXL_009602SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016
whole organism asexual adult RNA-sequencing evidence
pharynxSMED30009071SMESG000017123.1 dd_Smed_v4_10551_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30009071SMESG000017123.1 dd_Smed_v4_10551_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30009071SMESG000017123.1 dd_Smed_v4_10551_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30009071SMESG000017123.1 dd_Smed_v4_10551_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30009071SMESG000017123.1 dd_Smed_v4_10551_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30009071SMESG000017123.1 dd_Smed_v6_10551_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017
whole organism asexual adult RNA-sequencing evidence
epidermisSMED30009071SMESG000017123.1 dd_Smed_v4_10551_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017
whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30009071 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.003568:12169..16775 +6153
Homology
BLAST of SMED30009071 vs. TrEMBL
Match: W4ZH54 (Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.931e-8
Identity = 60/221 (27.15%), Postives = 98/221 (44.34%), Query Frame = 2
Query:  164 HEQLLHDYFGAEVADSFLHPVMDTSVGVAGMSAXXXXXXXXXXXXXXXXXXTYDQALSKLT--SNAERLWKILRENSIYNIEKEDKRIPEDLKMSFDSFARSCINRNMTPPERSFVENNELKEMEKIVKNRKIEKSDLARRKKQLMFNLSRVQEGNQKILMREKSFLGDTDMGFGTKELFFPPILDGVPDHFSVHKDIEHRKPHEKSYHKML---ADLEVE 811
            H+Q L++ FG E A+ +LHP ++                      ++R  I    A+ +L   + A  LW  LR+ S   ++  D RIP +LK ++ +F R C+ +N T  +RSF    E+ E EK+  N   ++    +R+ +LM+  +   E    +L+            F   E    P L  +P    V  D E     +KSY K L   +D+E+E
Sbjct:  258 HKQRLYNLFGQEEAEYYLHPRIEP---------------------ERRKVIRIPNAVKQLGGRAGAHTLWSTLRDRSQVKLKYADARIPLELKDAYGAFVRECLTKNKTVAKRSFYSETEVPESEKLQDNSYKDRVKETQRRMELMYRAALANEDKTGVLLYNNPM-----PDFNNFEGHEGP-LRYLPSWLQVDDDSEEGTEEDKSYKKWLLSSSDMEIE 451          
BLAST of SMED30009071 vs. TrEMBL
Match: A0A2G8L4Q9 (Putative ankyrin repeat domain-containing protein 11-like OS=Stichopus japonicus OX=307972 GN=BSL78_07850 PE=4 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 4.983e-7
Identity = 89/385 (23.12%), Postives = 149/385 (38.70%), Query Frame = 2
Query:  155 LLHHEQLLHDYFGAEVADSFLHP-VMDTSVGVAGMSAXXXXXXXXXXXXXXXXXXTYDQALSKLTSNAERLWKILRENSIYNIEKEDKRIPEDLKMSFDSFARSCINRNMTPPERSFVENNELKEMEKIVKNRKIEKSDLARRKKQLMFNLSRVQEGNQKILMREKSFLGDTDM-GFGTKELFFPPILDGVPDHFSVHKDIE-HRKPHEKSYHKMLADLEVEVVNEDALFQSNSKPSYPGLRFFTEQDSHKVLKSKR----EFMSNLDSKSKDMLMENIIDKSRRWAEDDRIRSGA----------SFEYVVPSKGKIER--------SKSQKDLSKMKPENV--KQWQPLTLGAVMDFKIAKKPTFLDEHTQFFRQGSVKLWRP 1228
            L  H+Q L+  FG E A+  LHP +M     V  +  ++ +                        + A+ LW +LR  +   +E+ D +IP +LK ++ ++ R  +        R F    +L   E++  +R  E     R + +LM+  S   E    +L+         D+ G    E + P  +DG         ++E  R   E+ Y K L  LE     E+   Q  SK S    R   ++  ++  +S R     F++   ++S+     N     RR  E       A          +  Y VP   + +R        S+SQ   ++    +   ++WQPLTL A+ D     +PT     T+ FR G    W+P
Sbjct:   55 LPPHKQELYRLFGPEEAECILHPKIMPEKKRVIQVPTALRNQGGR--------------------AGADPLWHLLRSKTHLKLEQADSQIPAELKQAYSAYIREYLTHTKPASRRQFYTERDLPPSERMEDSRYHEHIREIRHRMELMYRSSLANEDKTSVLLHNNPMPDFNDLNGSDGIERYHPSWVDG---------EVEDSRSEDEQDYRKWLPPLETSKSPEEPEPQPRSKSSDELQRMDPQKKGNRGHRSHRGQKLSFLTEEKARSEGQFWRN-----RRNPEIPEPSVPAYMIMAEALDDNVYYHVPEMSQDDRQENVLRRQSRSQNSTTRESKSSASHRKWQPLTLSALGDH----RPTVDLPGTRDFRFGQPMTWKP 401          
BLAST of SMED30009071 vs. TrEMBL
Match: K1S1I0 (Uncharacterized protein OS=Crassostrea gigas OX=29159 GN=CGI_10026551 PE=4 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 7.631e-7
Identity = 93/419 (22.20%), Postives = 176/419 (42.00%), Query Frame = 2
Query:   68 NFESLSHGPISSLEEVDENEAFSTESKPTLLHHEQLLHDYFGAEVADSFLHPVMDTSVGVAGMSAXXXXXXXXXXXXXXXXXXTYDQALSKLTSNAERLWKILRENSIYNIEKEDKRIPEDLKMSFDSFARSCINRNMTPPERSFVENNELKEMEKIVKNRKIEKSDLARRKKQLMFNLSRVQEGNQKILMR-----EKSFLGDTDM-GFGTKELFFPPILD----GVPDHF-------SVHKDIEHR--KPHEKSYHKMLADLEVEVVNEDALFQSNSKPSYPGLRFFTEQDSHKVLKSKREFMSNLDSKSKDMLMENIIDKSRRWAEDDRIRSGASFEYVVPSKGKIERSKSQKDL--------SKMKPEN-------VKQWQPLTLGAVMDFKIAKKPTFLDEHTQFFRQGSVKLW 1222
            N   +S  P ++ E +D + ++S      L  H++ L+   G + AD FLHP ++    V  +++ +      +   +     ++D +L +  +  +RL K LR+ S   + K D  IP++LK +F +F R  + ++  P  R F    ++ E+ ++  + K  +    + +  LM+  SR  E    IL+      E + L DTD  G G    + P  +D      PD+        + H+D+  +  K  ++ + K   DL  E   ++ + Q + +              H+  + K  FM   D+  K    +   D    +   D  R   + +   P+K K     + +DL        S   PE        + QW+PL++ A++++   K+   + E    + QG  K+W
Sbjct:  228 NLSPVSRTPTNT-ELLDRDPSWSMPEGEKLQWHQKQLYQVLG-KGADYFLHPKIEKK-AVKPINSKLRKEGGKRRKRESSEM-SFD-SLGR--AGVDRLLKTLRDESQIRLLKADAHIPQELKDTFGAFVRESVGKDRPPVRRFFCPQEDVPELARLQDHSKTARVRHYKHRVDLMYRASRNNEDRTNILIHNNPPPEVASL-DTDQDGVGR---YLPSWMDDRAESEPDYMKWVKEGGNTHRDLTSQPIKEDDEDWQKPEEDLGGEGFTDEVILQMSRR-------------KHRHPQPKYIFMKEEDTNVKGTFTDKFRDM---YDNADIPRPFNATKLPTPTKSKSVLGLTTEDLVEDRTSCQSAPVPERHRRYYDYISQWEPLSMNALIEYTQKKEAEGVGE----YNQGRPKMW 615          
BLAST of SMED30009071 vs. TrEMBL
Match: A0A1W5BCD0 (testis-specific gene 13 protein isoform X2 OS=Ciona intestinalis OX=7719 GN=LOC100185515 PE=4 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 9.878e-7
Identity = 41/159 (25.79%), Postives = 79/159 (49.69%), Query Frame = 2
Query:  164 HEQLLHDYFGAEVADSFLHPVMDTSVGVAGMSAXXXXXXXXXXXXXXXXXXTYDQALSKLTSNAERLWKILRENSIYNIEKEDKRIPEDLKMSFDSFARSCINRNMTPPERSFVENNELKEMEKIVKNRKIEKSDLARRKKQLMFNLSRVQEGNQKILM 640
            H Q+L++  GA+ A+S L+P M+             ++++      ++     D  +      A+ LWKIL++ S   ++  D RIP + K+S+ +F R  +N+N +   RSF  + ++ E++K++  R  E+   AR    +MF  S   +    +L+
Sbjct:   67 HHQVLYELLGADKAESILNPKMEEPA---------KNNEEISEMKHRKRLPAVDTGV-----GADALWKILKKESDRKLQSMDNRIPTEWKVSYGAFLRDSLNQNRSIVHRSFTHHVDVPELDKLMDKRYRERVRKARHHTNVMFRASENNKNKTTLLL 211          
BLAST of SMED30009071 vs. TrEMBL
Match: A0A1W2WHU0 (uncharacterized protein LOC100185515 isoform X1 OS=Ciona intestinalis OX=7719 GN=LOC100185515 PE=4 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 1.233e-6
Identity = 41/160 (25.62%), Postives = 79/160 (49.38%), Query Frame = 2
Query:  161 HHEQLLHDYFGAEVADSFLHPVMDTSVGVAGMSAXXXXXXXXXXXXXXXXXXTYDQALSKLTSNAERLWKILRENSIYNIEKEDKRIPEDLKMSFDSFARSCINRNMTPPERSFVENNELKEMEKIVKNRKIEKSDLARRKKQLMFNLSRVQEGNQKILM 640
             H Q+L++  GA+ A+S L+P M+             ++++      ++     D  +      A+ LWKIL++ S   ++  D RIP + K+S+ +F R  +N+N +   RSF  + ++ E++K++  R  E+   AR    +MF  S   +    +L+
Sbjct:  100 QHHQVLYELLGADKAESILNPKMEEPA---------KNNEEISEMKHRKRLPAVDTGV-----GADALWKILKKESDRKLQSMDNRIPTEWKVSYGAFLRDSLNQNRSIVHRSFTHHVDVPELDKLMDKRYRERVRKARHHTNVMFRASENNKNKTTLLL 245          
BLAST of SMED30009071 vs. Ensembl Nematostella
Match: EDO48134 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RKA4])

HSP 1 Score: 49.6766 bits (117), Expect = 1.555e-6
Identity = 28/99 (28.28%), Postives = 56/99 (56.57%), Query Frame = 2
Query:  350 NAERLWKILRENSIYNIEKEDKRIPEDLKMSFDSFARSCINRNMTPPERSFVENNELKEME-KIVKNRKIEKSDLARRKKQLMFNLSRVQEGNQKILMR 643
             A  LW +LR  S   +EK++  IP +LK ++ SF R C++ N+   ERSF++ N+ +  E ++ ++  I+    A  +  LM+ ++ + +   ++L +
Sbjct:   86 GAHDLWGLLRGKSQKKLEKQEDSIPTELKNAYRSFLRECVHANIPVFERSFIDRNKERIPEDQLSESHLIKDIHFALHRLDLMYRVAHMNKDKTRLLFK 184          

HSP 2 Score: 49.6766 bits (117), Expect = 1.569e-6
Identity = 28/99 (28.28%), Postives = 56/99 (56.57%), Query Frame = 2
Query:  350 NAERLWKILRENSIYNIEKEDKRIPEDLKMSFDSFARSCINRNMTPPERSFVENNELKEME-KIVKNRKIEKSDLARRKKQLMFNLSRVQEGNQKILMR 643
             A  LW +LR  S   +EK++  IP +LK ++ SF R C++ N+   ERSF++ N+ +  E ++ ++  I+    A  +  LM+ ++ + +   ++L +
Sbjct:  455 GAHDLWGLLRGKSQKKLEKQEDSIPTELKNAYRSFLRECVHANIPVFERSFIDKNKERIPEDQLSESHLIKDIHFALHRLDLMYRVAHMNKDKTRLLFK 553          
BLAST of SMED30009071 vs. Planmine SMEST
Match: SMESG000017123.1 (SMESG000017123.1)

HSP 1 Score: 768.844 bits (1984), Expect = 0.000e+0
Identity = 395/395 (100.00%), Postives = 395/395 (100.00%), Query Frame = 2
Query:   59 MNDNFESLSHGPISSLEEVDENEAFSTESKPTLLHHEQLLHDYFGAEVADSFLHPVMDTSVGVAGMSAXXXXXXXXXXXXXXXXXXTYDQALSKLTSNAERLWKILRENSIYNIEKEDKRIPEDLKMSFDSFARSCINRNMTPPERSFVENNELKEMEKIVKNRKIEKSDLARRKKQLMFNLSRVQEGNQKILMREKSFLGDTDMGFGTKELFFPPILDGVPDHFSVHKDIEHRKPHEKSYHKMLADLEVEVVNEDALFQSNSKPSYPGLRFFTEQDSHKVLKSKREFMSNLDSKSKDMLMENIIDKSRRWAEDDRIRSGASFEYVVPSKGKIERSKSQKDLSKMKPENVKQWQPLTLGAVMDFKIAKKPTFLDEHTQFFRQGSVKLWRPKLTQV 1243
            MNDNFESLSHGPISSLEEVDENEAFSTESKPTLLHHEQLLHDYFGAEVADSFLHPVMDTSVGVAGMSASISSHKKNKSSNKKRINITYDQALSKLTSNAERLWKILRENSIYNIEKEDKRIPEDLKMSFDSFARSCINRNMTPPERSFVENNELKEMEKIVKNRKIEKSDLARRKKQLMFNLSRVQEGNQKILMREKSFLGDTDMGFGTKELFFPPILDGVPDHFSVHKDIEHRKPHEKSYHKMLADLEVEVVNEDALFQSNSKPSYPGLRFFTEQDSHKVLKSKREFMSNLDSKSKDMLMENIIDKSRRWAEDDRIRSGASFEYVVPSKGKIERSKSQKDLSKMKPENVKQWQPLTLGAVMDFKIAKKPTFLDEHTQFFRQGSVKLWRPKLTQV
Sbjct:    1 MNDNFESLSHGPISSLEEVDENEAFSTESKPTLLHHEQLLHDYFGAEVADSFLHPVMDTSVGVAGMSASISSHKKNKSSNKKRINITYDQALSKLTSNAERLWKILRENSIYNIEKEDKRIPEDLKMSFDSFARSCINRNMTPPERSFVENNELKEMEKIVKNRKIEKSDLARRKKQLMFNLSRVQEGNQKILMREKSFLGDTDMGFGTKELFFPPILDGVPDHFSVHKDIEHRKPHEKSYHKMLADLEVEVVNEDALFQSNSKPSYPGLRFFTEQDSHKVLKSKREFMSNLDSKSKDMLMENIIDKSRRWAEDDRIRSGASFEYVVPSKGKIERSKSQKDLSKMKPENVKQWQPLTLGAVMDFKIAKKPTFLDEHTQFFRQGSVKLWRPKLTQV 395          
The following BLAST results are available for this feature:
BLAST of SMED30009071 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009071 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009071 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009071 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009071 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009071 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009071 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009071 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
W4ZH541.931e-827.15Uncharacterized protein OS=Strongylocentrotus purp... [more]
A0A2G8L4Q94.983e-723.12Putative ankyrin repeat domain-containing protein ... [more]
K1S1I07.631e-722.20Uncharacterized protein OS=Crassostrea gigas OX=29... [more]
A0A1W5BCD09.878e-725.79testis-specific gene 13 protein isoform X2 OS=Cion... [more]
A0A1W2WHU01.233e-625.63uncharacterized protein LOC100185515 isoform X1 OS... [more]
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BLAST of SMED30009071 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009071 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009071 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009071 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO481341.555e-628.28Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of SMED30009071 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009071 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000017123.10.000e+0100.00SMESG000017123.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30009071 ID=SMED30009071|Name=SMED30009071|organism=Schmidtea mediterranea sexual|type=transcript|length=1252bp
AATACATTGCTTAGCAACTGAATTTATAATTGAATAGCGTTTTTTTTAAA
AATTATAAATGAATGATAATTTTGAGAGCCTTTCTCATGGACCAATTTCG
TCTTTAGAAGAAGTAGATGAAAATGAAGCATTTTCTACTGAATCAAAGCC
TACATTATTACATCATGAACAGCTATTGCACGATTACTTTGGGGCAGAGG
TCGCCGACTCCTTCCTCCATCCAGTAATGGATACTTCAGTTGGGGTTGCT
GGCATGTCGGCAAGCATCAGTTCACACAAAAAGAACAAATCTTCGAACAA
AAAACGAATAAATATAACTTACGATCAAGCTCTTTCAAAGCTTACCAGTA
ATGCTGAAAGATTGTGGAAAATATTGAGAGAAAATTCGATTTATAACATC
GAAAAAGAGGATAAAAGAATTCCAGAAGATTTAAAAATGTCCTTTGATTC
GTTTGCAAGGAGCTGTATAAATCGCAACATGACCCCTCCAGAACGAAGCT
TTGTTGAAAATAATGAGTTGAAAGAGATGGAAAAAATAGTCAAGAACAGA
AAAATTGAAAAATCAGATTTGGCTAGACGAAAAAAACAATTAATGTTTAA
TTTATCTCGAGTCCAAGAAGGCAATCAAAAAATTTTGATGAGAGAAAAAA
GTTTCCTAGGAGACACCGATATGGGATTCGGAACCAAAGAGCTTTTTTTC
CCTCCGATCCTTGACGGTGTCCCAGACCATTTCTCAGTTCATAAAGATAT
AGAACATCGAAAACCCCACGAAAAAAGTTATCACAAGATGCTTGCTGATC
TTGAAGTTGAAGTTGTCAATGAAGATGCTCTATTCCAAAGTAATTCCAAG
CCATCCTACCCTGGTTTAAGATTTTTTACGGAACAGGATTCTCACAAAGT
TCTCAAAAGTAAACGAGAGTTTATGAGCAATTTGGATTCAAAATCCAAAG
ACATGCTGATGGAAAATATTATTGATAAATCTCGACGTTGGGCCGAGGAC
GATCGTATACGTTCGGGAGCATCCTTTGAATACGTAGTGCCTTCTAAGGG
TAAAATCGAGAGGTCAAAATCACAGAAAGACCTTTCAAAAATGAAACCAG
AAAATGTGAAACAATGGCAGCCATTAACTCTTGGTGCTGTAATGGATTTC
AAGATAGCCAAGAAACCAACATTTCTCGATGAACACACTCAATTTTTCCG
TCAGGGTTCAGTAAAACTTTGGCGACCTAAATTAACTCAAGTGTAACATA
TC
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protein sequence of SMED30009071-orf-1

>SMED30009071-orf-1 ID=SMED30009071-orf-1|Name=SMED30009071-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=396bp
MNDNFESLSHGPISSLEEVDENEAFSTESKPTLLHHEQLLHDYFGAEVAD
SFLHPVMDTSVGVAGMSASISSHKKNKSSNKKRINITYDQALSKLTSNAE
RLWKILRENSIYNIEKEDKRIPEDLKMSFDSFARSCINRNMTPPERSFVE
NNELKEMEKIVKNRKIEKSDLARRKKQLMFNLSRVQEGNQKILMREKSFL
GDTDMGFGTKELFFPPILDGVPDHFSVHKDIEHRKPHEKSYHKMLADLEV
EVVNEDALFQSNSKPSYPGLRFFTEQDSHKVLKSKREFMSNLDSKSKDML
MENIIDKSRRWAEDDRIRSGASFEYVVPSKGKIERSKSQKDLSKMKPENV
KQWQPLTLGAVMDFKIAKKPTFLDEHTQFFRQGSVKLWRPKLTQV*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000026gut
PLANA:0000034epidermis
PLANA:0000418head
Vocabulary: INTERPRO
TermDefinition
IPR029241TSGA13
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
IPR029241Testis-specific gene 13 proteinPANTHERPTHR37352FAMILY NOT NAMEDcoord: 35..388