SMED30009051

Overview
NameSMED30009051
Smed IDSMED30009051
Length (bp)1396
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30009051 (SMED30009051) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30009051 (SMED30009051) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30009051 (SMED30009051) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30009051 (SMED30009051) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30009051

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 3

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
posterior sideSMED30009051 dd_Smed_v4_10445_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
posterior muscle cellSMED30009051 dd_Smed_v4_10445_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30009051 dd_Smed_v4_10445_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30009051 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.018848:942..2337 -6980
v31.021687:6510..7920 +6381
v31.018113:5516..6927 -6362
v31.004591:31077..32490 -6221
v31.011757:10089..11425 +6205
v31.009715:2834..4215 +6191
Homology
[Close]
BLAST of SMED30009051 vs. Ensembl Zebrafish
Match: FO704673.1 (pep chromosome:GRCz11:12:14545475:14551077:-1 gene:ENSDARG00000112601.1 transcript:ENSDART00000188717.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:FO704673.1)

HSP 1 Score: 43.8986 bits (102), Expect = 5.942e-11
Identity = 24/71 (33.80%), Postives = 39/71 (54.93%), Query Frame = -1 
Query:  659 VTLKSISAEIVANAILQQ*IFR-YGVPKSIRIDRETQFESQLFQQLTEKLAIQHFRSTAYHLKINGITERL 868
            + LK +   +     L Q +FR YG+P+ I  DR  QF S++++   ++L I    ++ YH + NG  ERL
Sbjct: 1085 IPLKGLPTAMETALELFQHVFRVYGIPEDIVSDRGPQFTSKVWKAFCKQLDINVSLTSGYHPESNGQVERL 1155

HSP 2 Score: 43.1282 bits (100), Expect = 5.942e-11
Identity = 26/95 (27.37%), Postives = 39/95 (41.05%), Query Frame = -2 
Query:  889 HATHDLHHLGFSAAFTLLHSQVIWPAMRHEVKLWVSQCIGCQQHKITKHTKP------PIIHYPTGNRFETLHFDLVGPLPPDNGFSYLLTMIDK 1155
            H +    H G S    L+ +   WP M  ++  +V  C  C Q K  +          PI H P    +  L  D V  LP  N ++ +L +ID+
Sbjct:  987 HNSLSSGHPGISRTLNLVRNAFWWPKMNQDITTFVKSCAVCAQSKTPRELPSGLLQPLPIPHRP----WSHLSIDFVTDLPNSNNYTTILVIIDR 1077
[Close]
BLAST of SMED30009051 vs. Ensembl Zebrafish
Match: BX571665.1 (pep chromosome:GRCz11:17:35431724:35437222:1 gene:ENSDARG00000111789.1 transcript:ENSDART00000190293.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BX571665.1)

HSP 1 Score: 41.5874 bits (96), Expect = 4.598e-9
Identity = 21/64 (32.81%), Postives = 36/64 (56.25%), Query Frame = -1 
Query:  659 SAEIVANAILQQ*IFRYGVPKSIRIDRETQFESQLFQQLTEKLAIQHFRSTAYHLKINGITERL 850
            +AE + N + +     +G+P  I  DR +QF S+++  L + L I    ++ YH + NG TER+
Sbjct: 1101 TAEALCNHVFRM----FGLPDDIVSDRGSQFTSRVWSALCKNLNINVSLTSGYHPQSNGQTERM 1160

HSP 2 Score: 38.891 bits (89), Expect = 4.598e-9
Identity = 23/92 (25.00%), Postives = 43/92 (46.74%), Query Frame = -2 
Query:  889 FHATHDLHHLGFSAAFTLLHSQVIWPAMRHEVKLWVSQCIGCQQHKITKHTKPPIIH-YPTGNR-FETLHFDLVGPLPPDNGFSYLLTMIDK 1158
             H T    H G +A   L+ ++  WP++  +V  +V +C  CQ  K +  T   ++   P   R +  +  D +  LP     + +LT++D+
Sbjct:  991 IHDTPSSGHPGITATLELVKARFWWPSLTKDVINYVQKCKICQSTKASHQTPAGLLQPLPVPQRPWSHIAVDFITDLPVSQNNTVILTVVDR 1082
[Close]
BLAST of SMED30009051 vs. Ensembl Zebrafish
Match: CU929458.1 (pep chromosome:GRCz11:11:43363075:43368382:1 gene:ENSDARG00000114395.1 transcript:ENSDART00000179934.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CU929458.1)

HSP 1 Score: 41.5874 bits (96), Expect = 4.905e-9
Identity = 21/64 (32.81%), Postives = 36/64 (56.25%), Query Frame = -1 
Query:  659 SAEIVANAILQQ*IFRYGVPKSIRIDRETQFESQLFQQLTEKLAIQHFRSTAYHLKINGITERL 850
            +AE + N + +     +G+P  I  DR +QF S+++  L + L I    ++ YH + NG TER+
Sbjct: 1108 TAEALCNHVFRM----FGLPDDIVSDRGSQFTSRVWSALCKNLNINVSLTSGYHPQSNGQTERM 1167

HSP 2 Score: 38.5058 bits (88), Expect = 4.905e-9
Identity = 23/92 (25.00%), Postives = 43/92 (46.74%), Query Frame = -2 
Query:  889 FHATHDLHHLGFSAAFTLLHSQVIWPAMRHEVKLWVSQCIGCQQHKITKHTKPPIIH-YPTGNR-FETLHFDLVGPLPPDNGFSYLLTMIDK 1158
             H T    H G +A   L+ ++  WP++  +V  +V +C  CQ  K +  T   ++   P   R +  +  D +  LP     + +LT++D+
Sbjct:  998 IHDTPSSGHPGITATLELVKARFWWPSLTKDVINYVQKCEICQSTKASHQTPAGLLQPLPVPQRPWSHIAVDFITDLPVSQNNTVILTVVDR 1089
[Close]
BLAST of SMED30009051 vs. Ensembl Zebrafish
Match: CR354395.2 (pep chromosome:GRCz11:12:13553730:13556536:-1 gene:ENSDARG00000101547.2 transcript:ENSDART00000166396.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CR354395.2)

HSP 1 Score: 39.6614 bits (91), Expect = 1.851e-8
Identity = 20/64 (31.25%), Postives = 35/64 (54.69%), Query Frame = -1 
Query:  659 SAEIVANAILQQ*IFRYGVPKSIRIDRETQFESQLFQQLTEKLAIQHFRSTAYHLKINGITERL 850
            +AE + N + +     +G+P  I  DR +QF S+++  L + L I    ++ YH + NG TE +
Sbjct:  766 TAEALCNHVFRM----FGLPDDIVSDRGSQFTSRVWSALCKNLNINVSLTSGYHPQSNGQTEHM 825

HSP 2 Score: 38.891 bits (89), Expect = 1.851e-8
Identity = 23/92 (25.00%), Postives = 43/92 (46.74%), Query Frame = -2 
Query:  889 FHATHDLHHLGFSAAFTLLHSQVIWPAMRHEVKLWVSQCIGCQQHKITKHTKPPIIH-YPTGNR-FETLHFDLVGPLPPDNGFSYLLTMIDK 1158
             H T    H G +A   L+ ++  WP++  +V  +V +C  CQ  K +  T   ++   P   R +  +  D +  LP     + +LT++D+
Sbjct:  656 IHDTPSSGHPGITATLELVKARFWWPSLTKDVINYVQKCKICQSTKASHQTPAGLLQPLPVPQRPWSHIAVDFITDLPVSQNNTVILTVVDR 747
[Close]
BLAST of SMED30009051 vs. Ensembl Zebrafish
Match: CR533578.3 (pep chromosome:GRCz11:16:23466094:23471387:-1 gene:ENSDARG00000115891.1 transcript:ENSDART00000180899.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CR533578.3)

HSP 1 Score: 38.891 bits (89), Expect = 3.079e-8
Identity = 20/52 (38.46%), Postives = 32/52 (61.54%), Query Frame = -1 
Query:  659 IFR-YGVPKSIRIDRETQFESQLFQQLTEKLAIQHFRSTAYHLKINGITERL 811
            +FR +G+P  I  DR +QF S+++  L + L I    ++ YH + NG TER+
Sbjct: 1116 VFRMFGLPDDIVSDRGSQFTSRVWSALCKNLNINVSLTSGYHPQSNGQTERM 1167

HSP 2 Score: 38.5058 bits (88), Expect = 3.079e-8
Identity = 23/92 (25.00%), Postives = 43/92 (46.74%), Query Frame = -2 
Query:  889 FHATHDLHHLGFSAAFTLLHSQVIWPAMRHEVKLWVSQCIGCQQHKITKHTKPPIIH-YPTGNR-FETLHFDLVGPLPPDNGFSYLLTMIDK 1158
             H T    H G +A   L+ ++  WP++  +V  +V +C  CQ  K +  T   ++   P   R +  +  D +  LP     + +LT++D+
Sbjct:  998 IHDTPSSGHPGITATLELVKARFWWPSLTKDVINYVQKCKICQSTKASHQTPAGLLQPLPVPQRPWSHIAVDFITDLPVSQNNTVILTVVDR 1089
[Close]
BLAST of SMED30009051 vs. Ensembl Xenopus
Match: ENSXETT00000023941.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:KV463742.1:21:4282:-1 gene:ENSXETG00000015734.1 transcript:ENSXETT00000023941.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 65.4698 bits (158), Expect = 1.150e-16
Identity = 41/104 (39.42%), Postives = 58/104 (55.77%), Query Frame = -1 
Query:  587 RLFEAVTLKSISAEIVANAILQQ*IF-RYGVPKSIRIDRETQFESQLFQQLTEKLAIQHFRSTAYHLKINGITERLYRTLKT--SRGILSSKVNWTKL--YLLF 883
            R  EAV L+ I A  VA+A++Q  IF R G P  I  D+  QF SQL Q L ++  ++   S+ YH + NG+ ER   TLKT     + S + +W +   +LLF
Sbjct:  739 RYPEAVALRKIDAPTVADALIQ--IFSRVGFPSEILSDQGPQFTSQLLQCLWQRCGVRAIHSSPYHPQTNGLCERFNGTLKTMLRTFVESGEKDWERYLPHLLF 840

HSP 2 Score: 41.2022 bits (95), Expect = 1.150e-16
Identity = 31/106 (29.25%), Postives = 45/106 (42.45%), Query Frame = -2 
Query:  877 FHATHDL---HHLGFSAAFTLLHSQVIWPAMRHEVKLWVSQCIGCQQHKITKHTKP-------PIIHYPTGNRFETLHFDLVGPL--PPDNGFSYLLTMIDKKGVY 1158
             H  H++    H G +     L     WP +  EV  +   C  CQ+     + KP       PII  P    F+ +  DL+GPL  P  +G  Y+LT++D    Y
Sbjct:  640 LHMAHEIPLAGHQGVTRTRHRLTQNFYWPGISQEVTRYCRTCDSCQRTG-RANDKPKFPLCPLPIISEP----FQRVAVDLIGPLSRPSRSGKQYILTVMDYATRY 740
[Close]
BLAST of SMED30009051 vs. Ensembl Xenopus
Match: ENSXETT00000025355.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:1:22781891:22783779:1 gene:ENSXETG00000014447.1 transcript:ENSXETT00000025355.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 51.9878 bits (123), Expect = 7.790e-15
Identity = 31/96 (32.29%), Postives = 47/96 (48.96%), Query Frame = -1 
Query:  602 RLFEAVTLKSISAEIVANAILQQ*IFRYGVPKSIRIDRETQFESQLFQQLTEKLAIQHFRSTAYHLKINGITERLYRTLKTSRGILS--SKVNWTK 883
            R  +A   K   A  VA  ++++    YG+PK I  D+   FES+L  +L   L +   R+T YH + +   ER  RTL    G L    K +W++
Sbjct:  217 RYAQAFPTKDQRAITVAKVLVERFFIHYGLPKRIHSDQGRDFESKLVHELMSMLGVLKSRTTPYHPQGDPQPERFNRTLLDMLGTLPKEKKTHWSR 312

HSP 2 Score: 48.521 bits (114), Expect = 7.790e-15
Identity = 24/88 (27.27%), Postives = 41/88 (46.59%), Query Frame = -2 
Query:  892 ATHDLH-HLGFSAAFTLLHSQVIWPAMRHEVKLWVSQCIGCQQHKITKHTKPPIIHYPTGNRFETLHFDLVGPLPPDNGFSYLLTMID 1152
            A HD H HLG+     L+  +  WP M+ +V+ +   C+ C Q K       P+ H  + +  + +  D +   P + G S +L + D
Sbjct:  126 ALHDEHGHLGYDKTLGLVRDRFYWPCMKQDVEDYCRSCLRCIQRKTLPSRAAPLSHMESHSPLDLVCIDFLSIEPDEGGTSNVLVVTD 213
[Close]
BLAST of SMED30009051 vs. Ensembl Xenopus
Match: ENSXETT00000006041.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:6:37317867:37322724:1 gene:ENSXETG00000003070.1 transcript:ENSXETT00000006041.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 51.9878 bits (123), Expect = 1.441e-14
Identity = 31/96 (32.29%), Postives = 47/96 (48.96%), Query Frame = -1 
Query:  602 RLFEAVTLKSISAEIVANAILQQ*IFRYGVPKSIRIDRETQFESQLFQQLTEKLAIQHFRSTAYHLKINGITERLYRTLKTSRGILS--SKVNWTK 883
            R  +A   K   A  VA  ++++    YG+PK I  D+   FES+L  +L   L +   R+T YH + +   ER  RTL    G L    K +W++
Sbjct: 1004 RYAQAFPTKDQRAITVAKVLVERFFIHYGLPKRIHSDQGRDFESKLVHELMSMLGVLKSRTTPYHPQGDPQPERFNRTLLDMLGTLPKEKKTHWSR 1099

HSP 2 Score: 47.7506 bits (112), Expect = 1.441e-14
Identity = 24/88 (27.27%), Postives = 41/88 (46.59%), Query Frame = -2 
Query:  892 ATHDLH-HLGFSAAFTLLHSQVIWPAMRHEVKLWVSQCIGCQQHKITKHTKPPIIHYPTGNRFETLHFDLVGPLPPDNGFSYLLTMID 1152
            A HD H HLG+     L+  +  WP M+ +V+ +   C+ C Q K       P+ H  + +  + +  D +   P + G S +L + D
Sbjct:  913 ALHDEHGHLGYDKTLGLVRDRFYWPCMKQDVEDYCRSCLRCIQRKTLPSRAAPLSHMESHSPLDLVCIDFLSIEPDEGGTSNVLVVTD 1000
[Close]
BLAST of SMED30009051 vs. Ensembl Xenopus
Match: mybl2 (MYB proto-oncogene like 2 [Source:Xenbase;Acc:XB-GENE-982419])

HSP 1 Score: 55.4546 bits (132), Expect = 5.034e-14
Identity = 33/107 (30.84%), Postives = 60/107 (56.07%), Query Frame = -1 
Query:  572 RLFEAVTLKSISAEIVANAILQQ*IF-RYGVPKSIRIDRETQFESQLFQQLTEKLAIQHFRSTAYHLKINGITERLYRTLKT--SRGILSSKVNWTKLYLLFFLVGA 883
            R  EA+ L++ S++ +A  ++   +F R G+PK I  D+ T F S++ ++L     +   R++ YH + +G+ ER  +TLK+   + +     NW   YLL +L+ A
Sbjct:  176 RYPEAIPLRNTSSKSIARELVH--VFSRVGIPKEILTDQGTPFMSRVMKELCRLFKVVQLRTSVYHPQTDGLVERFNKTLKSMLKKVVDKDGKNWD--YLLPYLMFA 278

HSP 2 Score: 42.743 bits (99), Expect = 5.034e-14
Identity = 25/88 (28.41%), Postives = 39/88 (44.32%), Query Frame = -2 
Query:  877 HLGFSAAFTLLHSQVIWPAMRHEVKLWVSQCIGCQQHKITKHTKPPIIHYPT-GNRFETLHFDLVGPL-PPDNGFSYLLTMIDKKGVY 1134
            HLG       +  +  WP +  EV+ + S C  CQ      H + P++  P     FE +  DLVGP+     G  ++L ++D    Y
Sbjct:   90 HLGVEKTKERILQRFFWPGLHGEVEQYCSSCPDCQYSAPRPHFRSPLVPLPVIETPFERIAMDLVGPIVKSARGHQHILVIMDYATRY 177
[Close]
BLAST of SMED30009051 vs. Ensembl Xenopus
Match: nmbr (neuromedin B receptor [Source:Xenbase;Acc:XB-GENE-6074611])

HSP 1 Score: 52.373 bits (124), Expect = 4.961e-13
Identity = 26/82 (31.71%), Postives = 49/82 (59.76%), Query Frame = -1 
Query:  641 RLFEAVTLKSISAEIVANAILQQ*IF-RYGVPKSIRIDRETQFESQLFQQLTEKLAIQHFRSTAYHLKINGITERLYRTLKT 883
            R  EA+ L++ S++ +A  ++   +F R G+PK I  D+ T F S++ ++L     +   R++ YH + +G+ ER  +TLK+
Sbjct:  243 RYPEAIPLRNTSSKSIARELVH--VFSRVGIPKEILTDQGTPFMSRVMKELCRLFKVVQLRTSVYHPQTDGLVERFNKTLKS 322

HSP 2 Score: 42.3578 bits (98), Expect = 4.961e-13
Identity = 24/83 (28.92%), Postives = 38/83 (45.78%), Query Frame = -2 
Query:  892 HLGFSAAFTLLHSQVIWPAMRHEVKLWVSQCIGCQQHKITKHTKPPIIHYPT-GNRFETLHFDLVGPL-PPDNGFSYLLTMID 1134
            HLG       +  +  WP +  EV+ + S C  CQ      H + P++  P     FE +  DLVGP+     G  ++L ++D
Sbjct:  157 HLGVEKTKERILQRFFWPGLHGEVEQYCSSCPDCQYSAPRPHFRSPLVPLPVIETPFERIAMDLVGPIVKSARGHQHILVIMD 239
[Close]
BLAST of SMED30009051 vs. UniProt/SwissProt
Match: sp|P10394|POL4_DROME (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 4.688e-11
Identity = 31/99 (31.31%), Postives = 56/99 (56.57%), Query Frame = -1 
Query:  581 AVTLKSISAEIVANAILQQ*IFRYGVPKSIRIDRETQFESQLFQQLTEKLAIQHFRSTAYHLKINGITERLYRTLKT--SRGILSSKVNWTKLYLLFFL 871
            A+ + + SA+ VA AI +  I +YG  K+   D  T++++ +   L + L I++  STA+H +  G+ ER +RTL       I + K +W  ++L +F+
Sbjct:  999 AIPIANKSAKTVAKAIFESFILKYGPMKTFITDMGTEYKNSIITDLCKYLKIKNITSTAHHHQTVGVVERSHRTLNEYIRSYISTDKTDW-DVWLQYFV 1096

HSP 2 Score: 37.7354 bits (86), Expect = 4.688e-11
Identity = 30/89 (33.71%), Postives = 43/89 (48.31%), Query Frame = -2 
Query:  874 HLGFSAAFTLLHSQVIWPAMRHEVKLWVSQCIGCQQHKITKHTKPPIIHYPTGNR-FETLHFDLVGPLP-PDNGFSYLLTMIDKKGVYL 1134
            H G +     +     W  M   +K +V +C  CQ+ K TKHTK P+    T    F+ +  D +GPLP  +NG  Y +T+I     YL
Sbjct:  909 HTGITKTLAKVKRHYYWKNMSKYIKEYVRKCQKCQKAKTTKHTKTPMTITETPEHAFDRVVVDTIGPLPKSENGNEYAVTLICDLTKYL 997
[Close]
BLAST of SMED30009051 vs. UniProt/SwissProt
Match: sp|P23074|POL_SFV1 (Pro-Pol polyprotein OS=Simian foamy virus type 1 OX=338478 GN=pol PE=1 SV=3)

HSP 1 Score: 60.4622 bits (145), Expect = 7.349e-11
Identity = 30/91 (32.97%), Postives = 46/91 (50.55%), Query Frame = -2 
Query:  892 FHATHDLHHLGFSAAFTLLHSQVIWPAMRHEVKLWVSQCIGCQQHKITKHTKPPIIHYPTG--NRFETLHFDLVGPLPPDNGFSYLLTMID 1158
                H++ H G  A F  + S+  WP +R +V   + QC  C     T  T PPI+  P      F+  + D +GPLPP NG+ ++L ++D
Sbjct:  808 ISTAHNIAHTGRDATFLKVSSKYWWPNLRKDVVKSIRQCKQCLVTNATNLTSPPILR-PVKPLKPFDKFYIDYIGPLPPSNGYLHVLVVVD 897

HSP 2 Score: 28.8758 bits (63), Expect = 7.349e-11
Identity = 15/46 (32.61%), Postives = 22/46 (47.83%), Query Frame = -1 
Query:  662 GVPKSIRIDRETQFESQLFQQLTEKLAIQHFRSTAYHLKINGITER 799
             +PK +  D+   F S  F    ++  IQ   ST YH + +G  ER
Sbjct:  927 AIPKVLHSDQGAAFTSSTFADWAKEKGIQLEFSTPYHPQSSGKVER 972
[Close]
BLAST of SMED30009051 vs. UniProt/SwissProt
Match: sp|P27401|POL_SFV3L (Pro-Pol polyprotein OS=Simian foamy virus type 3 (strain LK3) OX=11644 GN=pol PE=3 SV=2)

HSP 1 Score: 54.6842 bits (130), Expect = 1.328e-9
Identity = 26/87 (29.89%), Postives = 43/87 (49.43%), Query Frame = -2 
Query:  892 THDLHHLGFSAAFTLLHSQVIWPAMRHEVKLWVSQCIGCQQHKITKHTKPPIIHYPTGNR-FETLHFDLVGPLPPDNGFSYLLTMID 1149
             H++ H G  + F  + S+  WP +R +V   + QC  C          PPI+      + F+    D +GPLPP NG+ ++L ++D
Sbjct:  811 AHNIAHTGRDSTFLKVSSKYWWPNLRKDVVKVIRQCKQCLVTNAATLAAPPILRPERPVKPFDKFFIDYIGPLPPSNGYLHVLVVVD 897

HSP 2 Score: 30.4166 bits (67), Expect = 1.328e-9
Identity = 17/46 (36.96%), Postives = 21/46 (45.65%), Query Frame = -1 
Query:  662 GVPKSIRIDRETQFESQLFQQLTEKLAIQHFRSTAYHLKINGITER 799
             VPK I  D+   F S  F    +   IQ   ST YH + +G  ER
Sbjct:  927 AVPKVIHSDQGAAFTSATFADWAKNKGIQLEFSTPYHPQSSGKVER 972
[Close]
BLAST of SMED30009051 vs. UniProt/SwissProt
Match: sp|Q87040|POL_SFVCP (Pro-Pol polyprotein OS=Simian foamy virus (isolate chimpanzee) OX=298339 GN=pol PE=3 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 2.199e-8
Identity = 26/86 (30.23%), Postives = 41/86 (47.67%), Query Frame = -2 
Query:  892 HDLHHLGFSAAFTLLHSQVIWPAMRHEVKLWVSQCIGCQQHKITKHTKPPIIHYPTGNR-FETLHFDLVGPLPPDNGFSYLLTMID 1146
            H+L H G  A    + +   WP MR +V   + +C  C     +  T  PI+      + F+    D +GPLPP  G+ Y+L ++D
Sbjct:  813 HNLAHTGREATLLKIANLYWWPNMRKDVVKQLGRCKQCLITNASNKTSGPILRPDRPQKPFDKFFIDYIGPLPPSQGYLYVLVIVD 898

HSP 2 Score: 28.4906 bits (62), Expect = 2.199e-8
Identity = 15/46 (32.61%), Postives = 22/46 (47.83%), Query Frame = -1 
Query:  662 GVPKSIRIDRETQFESQLFQQLTEKLAIQHFRSTAYHLKINGITER 799
             +PK I  D+   F S  F +  ++  I    ST YH + +G  ER
Sbjct:  928 AIPKVIHSDQGAAFTSSTFAEWAKERGIHLEFSTPYHPQSSGKVER 973
[Close]
BLAST of SMED30009051 vs. UniProt/SwissProt
Match: sp|O93209|POL_FFV (Pro-Pol polyprotein OS=Feline foamy virus OX=53182 GN=pol PE=3 SV=1)

HSP 1 Score: 50.0618 bits (118), Expect = 2.607e-8
Identity = 25/91 (27.47%), Postives = 43/91 (47.25%), Query Frame = -2 
Query:  892 FHATHDLHHLGFSAAFTLLHSQVIWPAMRHEVKLWVSQCIGCQQHK--ITKHTKPPIIHYPTGNRFETLHFDLVGPLPPDNGFSYLLTMID 1158
                H++ H G  A    +     WP M+ ++  ++S C  C+       K   P  I +PT   F+  + D +GPLPP  G+ ++L ++D
Sbjct:  810 IKEAHNISHAGREAVLLKIQENYWWPKMKKDISSFLSTCNVCKMVNPLNLKPISPQAIVHPT-KPFDKFYMDYIGPLPPSEGYVHVLVVVD 899

HSP 2 Score: 30.4166 bits (67), Expect = 2.607e-8
Identity = 16/46 (34.78%), Postives = 25/46 (54.35%), Query Frame = -1 
Query:  662 GVPKSIRIDRETQFESQLFQQLTEKLAIQHFRSTAYHLKINGITER 799
             +PK +  D+ + F S+ F Q  ++  IQ   ST YH + +G  ER
Sbjct:  929 AIPKVLHSDQGSAFTSEEFAQWAKERNIQLEFSTPYHPQSSGKVER 974
[Close]
BLAST of SMED30009051 vs. TrEMBL
Match: A0A139W8U7 (Uncharacterized protein OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC031725 PE=4 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.394e-35
Identity = 41/91 (45.05%), Postives = 57/91 (62.64%), Query Frame = -2 
Query:  889 FHATHDLHHLGFSAAFTLLHSQVIWPAMRHEVKLWVSQCIGCQQHKITKHTKPPIIHYPT-GNRFETLHFDLVGPLPPDNGFSYLLTMIDK 1158
            F+  H+L H G +A   ++  + +WP +    + W  QCI CQ+ KIT+HTK     +PT  NRF  LH DLVGPLPP +G+ Y+LT ID+
Sbjct:  933 FYNVHNLSHPGVNATTKMVKQKYMWPGIDKNCRTWARQCISCQRSKITRHTKSNFGSFPTPTNRFRHLHLDLVGPLPPSHGYKYVLTCIDR 1023

HSP 2 Score: 87.0409 bits (214), Expect = 1.394e-35
Identity = 44/101 (43.56%), Postives = 65/101 (64.36%), Query Frame = -1 
Query:  581 RLFEAVTLKSISAEIVANAILQQ*IFRYGVPKSIRIDRETQFESQLFQQLTEKLAIQHFRSTAYHLKINGITERLYRTLKTSRGILSSKVNWTKLYLLFFL 883
            R  EA+ +K ISAE VA A+L   I R+G+P+ I  DR TQF+S+LF+ +++   I H ++TAYH + NG+ ERL++ LKTS    +++ NW     L  L
Sbjct: 1026 RWPEAIPIKDISAETVAQALLHTWIARFGIPELITTDRGTQFDSELFRNMSKLFGICHCKTTAYHPQANGMIERLHQQLKTSIKCHNTE-NWFDCLPLVLL 1125
[Close]
BLAST of SMED30009051 vs. TrEMBL
Match: A0A430QE18 (Uncharacterized protein OS=Schistosoma bovis OX=6184 GN=DC041_0010991 PE=4 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 3.035e-35
Identity = 38/91 (41.76%), Postives = 56/91 (61.54%), Query Frame = -2 
Query:  889 FHATHDLHHLGFSAAFTLLHSQVIWPAMRHEVKLWVSQCIGCQQHKITKHTKPPIIHYP-TGNRFETLHFDLVGPLPPDNGFSYLLTMIDK 1158
            F A H++ H G  A   L+  + +WP+M  +++ W   CI CQ+ KI +HT   + H+    NRFE +H D++GPLP  NGFSY+ T ID+
Sbjct:  656 FEAMHNISHPGIKATIKLISERFVWPSMNRDIRNWTQACIKCQRVKIHRHTSSAVGHFRHPDNRFEHVHIDIIGPLPVSNGFSYIFTCIDR 746

HSP 2 Score: 88.5817 bits (218), Expect = 3.035e-35
Identity = 46/97 (47.42%), Postives = 63/97 (64.95%), Query Frame = -1 
Query:  584 AVTLKSISAEIVANAILQQ*IFRYGVPKSIRIDRETQFESQLFQQLTEKLAIQHFRSTAYHLKINGITERLYRTLKTSRGILSSKVNW-TKLYLLFF 871
            AV +K I+AE +A  +++  I  YGVP +I  DR  QFES+LFQQLTE L I+  R+T+YH   NG+ ERL+R LK S   + S  +W +KL L+  
Sbjct:  753 AVPIKDITAETIAKTLVEHWISHYGVPTNITTDRGAQFESRLFQQLTELLGIKRIRTTSYHPMSNGMVERLHRQLKASLTAVISNNDWASKLPLVML 849
[Close]
BLAST of SMED30009051 vs. TrEMBL
Match: A0A430QDQ5 (Uncharacterized protein OS=Schistosoma bovis OX=6184 GN=DC041_0012774 PE=4 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 3.163e-35
Identity = 38/91 (41.76%), Postives = 56/91 (61.54%), Query Frame = -2 
Query:  889 FHATHDLHHLGFSAAFTLLHSQVIWPAMRHEVKLWVSQCIGCQQHKITKHTKPPIIHYP-TGNRFETLHFDLVGPLPPDNGFSYLLTMIDK 1158
            F A H++ H G  A   L+  + +WP+M  +++ W   CI CQ+ KI +HT   + H+    NRFE +H D++GPLP  NGFSY+ T ID+
Sbjct:  656 FEAMHNISHPGIKATIKLISERFVWPSMNRDIRNWTQACIKCQRVKIHRHTSSAVGHFRHPDNRFEHVHIDIIGPLPVSNGFSYIFTCIDR 746

HSP 2 Score: 88.5817 bits (218), Expect = 3.163e-35
Identity = 46/97 (47.42%), Postives = 63/97 (64.95%), Query Frame = -1 
Query:  584 AVTLKSISAEIVANAILQQ*IFRYGVPKSIRIDRETQFESQLFQQLTEKLAIQHFRSTAYHLKINGITERLYRTLKTSRGILSSKVNW-TKLYLLFF 871
            AV +K I+AE +A  +++  I  YGVP +I  DR  QFES+LFQQLTE L I+  R+T+YH   NG+ ERL+R LK S   + S  +W +KL L+  
Sbjct:  753 AVPIKDITAETIAKTLVEHWISHYGVPTNITTDRGAQFESRLFQQLTELLGIKRIRTTSYHPMSNGMVERLHRQLKASLTAVISNNDWASKLPLVML 849
[Close]
BLAST of SMED30009051 vs. TrEMBL
Match: A0A085MC24 (Uncharacterized protein (Fragment) OS=Trichuris suis OX=68888 GN=M513_04470 PE=4 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.111e-34
Identity = 38/96 (39.58%), Postives = 57/96 (59.38%), Query Frame = -2 
Query:  889 FT*ISFHATHDLHHLGFSAAFTLLHSQVIWPAMRHEVKLWVSQCIGCQQHKITKHTKPPIIHYPT-GNRFETLHFDLVGPLPPDNGFSYLLTMIDK 1173
            F  I F+  H L H G  A   LL  + +WP+++ +   W  +C+ CQ+ KI +H + P+ ++P    RF  +H D+VGPLPP  G SY+LT ID+
Sbjct:  555 FRKIVFNHLHSLSHPGTRATSRLLRERFVWPSIKKDCATWTRECLTCQKAKIHRHVRSPLANFPVPAERFSHVHIDIVGPLPPAQGHSYILTCIDR 650

HSP 2 Score: 83.5741 bits (205), Expect = 1.111e-34
Identity = 45/101 (44.55%), Postives = 63/101 (62.38%), Query Frame = -1 
Query:  581 RLFEAVTLKSISAEIVANAILQQ*IFRYGVPKSIRIDRETQFESQLFQQLTEKLAIQHFRSTAYHLKINGITERLYRTLKTSRGILSSKVNWTKLYLLFFL 883
            R  EA+ ++  SAE +A A LQ  + R+GVP++I  D+  QFES LF  LT+ L I+  R+TAY+ K NG+ ER++R LKT+  I   K NW +   L  L
Sbjct:  653 RWPEAMPIEDASAETIAFAFLQGWVSRFGVPRTITTDQGRQFESSLFNSLTQFLGIRRTRTTAYNPKANGLVERMHRQLKTAI-ICHKKANWLQALPLVLL 752

HSP 3 Score: 25.0238 bits (53), Expect = 1.111e-34
Identity = 12/22 (54.55%), Postives = 14/22 (63.64%), Query Frame = -3 
Query:  540 QALPIVLLGWRSTPVRTTGTSI 605
            QALP+VLLG RS      G S+
Sbjct:  745 QALPLVLLGMRSVVKEDLGFSV 766

HSP 4 Score: 23.483 bits (49), Expect = 1.111e-34
Identity = 26/97 (26.80%), Postives = 47/97 (48.45%), Query Frame = -2 
Query:  241 DNSPTLDELDTARDHVFSIDSNPQFTTASSYTPYVPKSFKDAKNVNVSNVTDSGFKKR----YYGPYKLXXXXXXXXXXXXNGVAQTINL*QLKPAL 519
            D S  + ++ TA   +  + +N       + TP+V K    + +V V      G KK     YYGP+++I+   N   ++++G  + + L +LKPA 
Sbjct:  791 DRSRLISDIRTAIQRMVPVPTNHH----GNPTPFVHKDLMSSSHVLVRK---GGVKKPLTAPYYGPFRVIERSKNFFTLDMHGEHRVVCLDRLKPAF 880
[Close]
BLAST of SMED30009051 vs. TrEMBL
Match: A0A5S6QCX0 (Uncharacterized protein OS=Trichuris muris OX=70415 PE=4 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.708e-34
Identity = 38/92 (41.30%), Postives = 56/92 (60.87%), Query Frame = -2 
Query:  889 FHATHDLHHLGFSAAFTLLHSQVIWPAMRHEVKLWVSQCIGCQQHKITKHTKPPIIHY--PTGNRFETLHFDLVGPLPPDNGFSYLLTMIDK 1158
            F   H+L H G  A   L+  + +WP+++ +   W  +C+ CQ  KI KHT+ P+  +  PT  RF  +H D+VGPLPP  G+SY+LT ID+
Sbjct:  906 FSHLHNLSHPGIRATSQLIRQRFVWPSIKKDCTTWTRECLACQTAKIHKHTRSPLGKFKVPT-ERFSHVHIDIVGPLPPAQGYSYILTCIDR 996

HSP 2 Score: 82.8037 bits (203), Expect = 2.708e-34
Identity = 43/101 (42.57%), Postives = 62/101 (61.39%), Query Frame = -1 
Query:  581 RLFEAVTLKSISAEIVANAILQQ*IFRYGVPKSIRIDRETQFESQLFQQLTEKLAIQHFRSTAYHLKINGITERLYRTLKTSRGILSSKVNWTKLYLLFFL 883
            R  EA+ +++ S E +A A L   + R+GVPK++  D+  QFES +F  LTE L I+H R+TAY+ K NG+ ER++R LKT+      K NW +   L  L
Sbjct:  999 RWPEAIPIQNTSTETIALAFLHAWVSRFGVPKTLTTDQGRQFESSMFNHLTEFLGIKHTRTTAYNPKANGLVERMHRQLKTAI-TCHKKDNWLQALPLVLL 1098

HSP 3 Score: 25.0238 bits (53), Expect = 2.708e-34
Identity = 29/103 (28.16%), Postives = 42/103 (40.78%), Query Frame = -2 
Query:  241 LIDFDNSPTLDELDTARDHVFSIDSNPQFTTA--SSYTPYVPKSFKDAKNVNVSNVTDSGFKKR----YYGPYKLXXXXXXXXXXXXNGVAQTINL*QLKPAL 531
             I     PT    D   D   +I      TT+   S TP+V K      +V +      G KK     Y GPY++I+       +++ G  + I L +LKPA 
Sbjct: 1127 FIATSKQPTGTGFDLVSDIRIAIQKMIPTTTSHHGSLTPFVHKDLMSTSHVFIRK---GGVKKPLTTPYDGPYRVIERNTKFFTLDMRGKQRVIGLDRLKPAF 1226

HSP 4 Score: 24.2534 bits (51), Expect = 2.708e-34
Identity = 11/24 (45.83%), Postives = 14/24 (58.33%), Query Frame = -3 
Query:  534 QALPIVLLGWRSTPVRTTGTSICN 605
            QALP+VLLG R+      G S+  
Sbjct: 1091 QALPLVLLGMRAAVKEDIGFSVAE 1114
[Close]
BLAST of SMED30009051 vs. Ensembl Cavefish
Match: ENSAMXT00000037741.1 (pep primary_assembly:Astyanax_mexicanus-2.0:6:27788674:27792885:-1 gene:ENSAMXG00000029895.1 transcript:ENSAMXT00000037741.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 70.4774 bits (171), Expect = 7.879e-19
Identity = 35/94 (37.23%), Postives = 57/94 (60.64%), Query Frame = -1 
Query:  599 EAVTLKSISAEIVANAILQQ*IFRYGVPKSIRIDRETQFESQLFQQLTEKLAIQHFRSTAYHLKINGITERLYRTLKT--SRGILSSKVNWTKL 874
            EA  +++  A+ VA  +++Q I R+G P+SI  D+   F+S LF+ + E L I   R+T YH   +G+ ERL RT+ T  S  + +++ NW +L
Sbjct:  190 EAFAMRAQDADTVARTVVEQFILRWGTPRSIHTDQGKNFDSALFRAICELLDIHKTRTTPYHPSSDGLVERLNRTITTMLSMFVDANQGNWDEL 283

HSP 2 Score: 42.743 bits (99), Expect = 7.879e-19
Identity = 25/91 (27.47%), Postives = 39/91 (42.86%), Query Frame = -2 
Query:  892 FHATHDLHHLGFSAAFTLLHSQVIWPAMRHEVKLWVSQCIGCQQHKIT-KHTKPPIIHYPTGNRFETLHFDLVGPLP-PDNGFSYLLTMID 1158
             H +    HLG +     + ++  WP    +V  W  +C  C   K +    + P+     G  FE L  D+VGPLP    G  Y++ + D
Sbjct:   93 LHNSKTGGHLGIAKLKDKIRTRFYWPKWSSDVMDWCKKCELCAVFKTSGAEPRAPLRPIQAGYPFEKLGIDIVGPLPVTSQGNKYIIVIAD 183
[Close]
BLAST of SMED30009051 vs. Ensembl Cavefish
Match: ENSAMXT00000033239.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02002121.1:47256:48953:1 gene:ENSAMXG00000036506.1 transcript:ENSAMXT00000033239.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 54.299 bits (129), Expect = 1.315e-16
Identity = 28/93 (30.11%), Postives = 49/93 (52.69%), Query Frame = -1 
Query:  602 EAVTLKSISAEIVANAILQQ*IFRYGVPKSIRIDRETQFESQLFQQLTEKLAIQHFRSTAYHLKINGITERLYRTLKTSRGILSSKV--NWTK 874
            EA  +    A   A+ ++++   R+GVP+ +  D+   FES++  ++   L I   R+T  H + +G+ ER  RTL     ++SSK   +W K
Sbjct:  264 EAYAVPDQGAVTTADVLVREFFCRFGVPEELHSDQGRNFESEVMAEVCRILGIHKTRTTPLHPQSDGLVERFNRTLAAQLAMVSSKGQRDWDK 356

HSP 2 Score: 47.3654 bits (111), Expect = 1.315e-16
Identity = 26/90 (28.89%), Postives = 41/90 (45.56%), Query Frame = -2 
Query:  892 HATHDLHHLGFSAAFTLLHSQVIWPAMRHEVKLWVSQCIGCQQHKI-TKHTKPPIIHYPTGNRFETLHFDLVGPLP-PDNGFSYLLTMID 1155
            H +    H G +     L  +  WP  R +V+L+V  C  C   K   +  + P+  Y  G   E +  D++GP P  D+G  Y+L  +D
Sbjct:  168 HGSPGAGHFGVTKTLKRLRQRFYWPGCRTDVELFVHCCDVCAAKKGPARAPRAPLHPYQCGGPMERVAVDVLGPFPVTDSGNRYVLVAMD 257

HSP 3 Score: 23.8682 bits (50), Expect = 1.315e-16
Identity = 11/20 (55.00%), Postives = 13/20 (65.00%), Query Frame = -3 
Query:  549 DQALPIVLLGWRSTPVRTTG 608
            D+ LP+VLL  RS    TTG
Sbjct:  355 DKHLPVVLLACRSAVQETTG 374
[Close]
BLAST of SMED30009051 vs. Ensembl Cavefish
Match: ENSAMXT00000039359.1 (pep primary_assembly:Astyanax_mexicanus-2.0:5:19359511:19362411:1 gene:ENSAMXG00000043892.1 transcript:ENSAMXT00000039359.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 62.3882 bits (150), Expect = 7.802e-16
Identity = 34/104 (32.69%), Postives = 63/104 (60.58%), Query Frame = -1 
Query:  584 RLFEAVTLKSISAEIVANAILQQ*IFR-YGVPKSIRIDRETQFESQLFQQLTEKLAIQHFRSTAYHLKINGITERLYRTLKTS--RGILSSKVNWTK-LYLLFF 883
            R  EA+ L+ I+A ++  A+++   F  +G+P+ ++ D+ T F S++FQQ+ + L I+H  S+ YH +  G  ER +++LK++  R  L +   W + + LL F
Sbjct:  128 RFPEAIPLRKITAPVIVRALVK--FFSTFGLPREVQTDQGTNFMSKIFQQVMKMLNIKHVVSSPYHPEFQGALERFHQSLKSALKRYCLETGKGWDEGVPLLLF 229

HSP 2 Score: 40.817 bits (94), Expect = 7.802e-16
Identity = 25/84 (29.76%), Postives = 39/84 (46.43%), Query Frame = -2 
Query:  895 HLGFSAAFTLLHSQVIWPAMRHEVKLWVSQCIGCQQHKITKHTKPPIIHYPT---GNRFETLHFDLVGPLPPD-NGFSYLLTMI 1134
            HLG +  ++ +     WP+++ +V  +   C  CQ         PP    P    G  FE +  D VGPLP   +G  +LLT++
Sbjct:   40 HLGVTKTYSRVLKCFFWPSLKKDVAEYCRTCHTCQCVGKPNQKIPPAPLCPVPVMGEPFERVLVDCVGPLPKSKSGNQFLLTIM 123
[Close]
BLAST of SMED30009051 vs. Ensembl Cavefish
Match: ENSAMXT00000042253.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000503.1:15658:18693:-1 gene:ENSAMXG00000039114.1 transcript:ENSAMXT00000042253.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 51.2174 bits (121), Expect = 1.023e-15
Identity = 27/93 (29.03%), Postives = 48/93 (51.61%), Query Frame = -1 
Query:  602 EAVTLKSISAEIVANAILQQ*IFRYGVPKSIRIDRETQFESQLFQQLTEKLAIQHFRSTAYHLKINGITERLYRTLKTSRGILSSKV--NWTK 874
            EA  +    A   A+ ++++   R+GVP+ +  D+   FES++  ++   L I   R+T  H + +G+ ER   TL     ++SSK   +W K
Sbjct:  778 EAYAVPDQGAVTTADVLVREFFCRFGVPEELHSDQGRNFESEVMAEVCRILGIHKTRTTPLHPQSDGLVERFNCTLAAQLAMVSSKGQRDWDK 870

HSP 2 Score: 46.9802 bits (110), Expect = 1.023e-15
Identity = 26/90 (28.89%), Postives = 41/90 (45.56%), Query Frame = -2 
Query:  892 HATHDLHHLGFSAAFTLLHSQVIWPAMRHEVKLWVSQCIGCQQHKI-TKHTKPPIIHYPTGNRFETLHFDLVGPLP-PDNGFSYLLTMID 1155
            H +    H G +     L  +  WP  R +V+L+V  C  C   K   +  + P+  Y  G   E +  D++GP P  D+G  Y+L  +D
Sbjct:  682 HGSPGAGHFGVTKTLKRLRQRFYWPGCRTDVELFVHCCDVCAAKKGPARAPRAPLHPYQCGGPMERVAVDVLGPFPVTDSGNRYVLVAMD 771

HSP 3 Score: 24.2534 bits (51), Expect = 1.023e-15
Identity = 11/20 (55.00%), Postives = 13/20 (65.00%), Query Frame = -3 
Query:  549 DQALPIVLLGWRSTPVRTTG 608
            D+ LP+VLL  RS    TTG
Sbjct:  869 DKHLPVVLLACRSAVQETTG 888
[Close]
BLAST of SMED30009051 vs. Ensembl Cavefish
Match: ENSAMXT00000036301.1 (pep primary_assembly:Astyanax_mexicanus-2.0:15:28817284:28820114:1 gene:ENSAMXG00000037673.1 transcript:ENSAMXT00000036301.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 56.225 bits (134), Expect = 1.127e-15
Identity = 29/100 (29.00%), Postives = 53/100 (53.00%), Query Frame = -1 
Query:  581 EAVTLKSISAEIVANAILQQ*IFRYGVPKSIRIDRETQFESQLFQQLTEKLAIQHFRSTAYHLKINGITERLYRTLKTSRGILSSK--VNWTKLYLLFFL 874
            EA  +   SA   A  +++    R+G+P+ +  D+   FESQ+  ++ ++L ++  R+T  H + +G+ ER  RTL T   I +S+   +W +   L  L
Sbjct:  501 EAYAVPDQSAATTATRLVEDFFCRFGIPEELHSDQGRNFESQVMAEVCKRLGVRKTRTTPLHPQSDGLVERFNRTLATQLAITTSRHQKDWDRHLPLVLL 600

HSP 2 Score: 46.595 bits (109), Expect = 1.127e-15
Identity = 24/92 (26.09%), Postives = 42/92 (45.65%), Query Frame = -2 
Query:  892 SFHATHDLHHLGFSAAFTLLHSQVIWPAMRHEVKLWVSQCIGCQQHKI-TKHTKPPIIHYPTGNRFETLHFDLVGPLP-PDNGFSYLLTMID 1161
            + H    + H G +     L  +  WP  R +V+L+V  C  C   K     ++ P+    +G   E +  D++GP P  ++G  Y+L  +D
Sbjct:  403 AIHGPAGVGHFGVTKTLRQLRQRFYWPGCRADVELFVHCCDSCTAKKGPVGRSRAPLQSLRSGAPMERVAVDVLGPFPVTEDGNRYVLVAMD 494
[Close]
BLAST of SMED30009051 vs. Ensembl Medaka
Match: ENSORLT00000043660.1 (pep primary_assembly:ASM223467v1:15:27996403:27998990:-1 gene:ENSORLG00000029791.1 transcript:ENSORLT00000043660.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 58.9214 bits (141), Expect = 1.006e-16
Identity = 37/104 (35.58%), Postives = 58/104 (55.77%), Query Frame = -1 
Query:  581 RLFEAVTLKSISAEIVANAILQQ*IF-RYGVPKSIRIDRETQFESQLFQQLTEKLAIQHFRSTAYHLKINGITERLYRTLKT--SRGILSSKVNWTKLYLLFFL 883
            R  EA  L+SI    + +A++Q  +F R GVP  I  D+ T F S   +QL ++L I+  R+T YH + +G+ ER  +TLK    + +  +  +W K +L F L
Sbjct:  227 RFPEAFPLRSIKTPKIISALVQ--LFSRVGVPDEIITDQATNFTSGTMKQLQKELGIKGIRTTPYHPQTDGLVERFNQTLKQMLRKFVADTGRDWDK-WLPFVL 327

HSP 2 Score: 47.3654 bits (111), Expect = 1.006e-16
Identity = 28/83 (33.73%), Postives = 40/83 (48.19%), Query Frame = -2 
Query:  892 HLGFSAAFTLLHSQVIWPAMRHEVKLWVSQCIGCQQHKITKHTKPPIIHYPT-GNRFETLHFDLVGPLPP-DNGFSYLLTMID 1134
            HLG    +  L S+  WP M  +VK + S C  CQ     K  + P+   P  G  F  +  D+VGPL    +G+ Y+L + D
Sbjct:  141 HLGQQKTYMRLGSRFFWPTMFKDVKQYCSTCPDCQVTSHIKVRQAPLHPLPVIGTPFRRIAMDVVGPLEKSSSGYKYILVICD 223
[Close]
BLAST of SMED30009051 vs. Ensembl Medaka
Match: ENSORLT00000033056.1 (pep primary_assembly:ASM223467v1:23:165526:166795:1 gene:ENSORLG00000025483.1 transcript:ENSORLT00000033056.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 58.151 bits (139), Expect = 1.700e-16
Identity = 37/104 (35.58%), Postives = 58/104 (55.77%), Query Frame = -1 
Query:  581 RLFEAVTLKSISAEIVANAILQQ*IF-RYGVPKSIRIDRETQFESQLFQQLTEKLAIQHFRSTAYHLKINGITERLYRTLKT--SRGILSSKVNWTKLYLLFFL 883
            R  EA  L+SI    + +A++Q  +F R GVP  I  D+ T F S   +QL ++L I+  R+T YH + +G+ ER  +TLK    + +  +  +W K +L F L
Sbjct:  151 RFPEAFPLRSIKTPKIISALVQ--LFSRVGVPDEIITDQATNFTSGTMKQLQKELGIKGIRTTPYHPQTDGLVERFNQTLKQMLRKFVADTGRDWDK-WLPFVL 251

HSP 2 Score: 47.3654 bits (111), Expect = 1.700e-16
Identity = 28/83 (33.73%), Postives = 40/83 (48.19%), Query Frame = -2 
Query:  892 HLGFSAAFTLLHSQVIWPAMRHEVKLWVSQCIGCQQHKITKHTKPPIIHYPT-GNRFETLHFDLVGPL-PPDNGFSYLLTMID 1134
            HLG    +  L S+  WP M  +VK + S C  CQ     K  + P+   P  G  F  +  D+VGPL    +G+ Y+L + D
Sbjct:   65 HLGQQKTYMRLGSRFFWPTMFKDVKQYCSTCPDCQVTSHIKVRQAPLHPLPVIGTPFRRIAMDVVGPLEKSSSGYKYILVICD 147
[Close]
BLAST of SMED30009051 vs. Ensembl Medaka
Match: ENSORLT00000041026.1 (pep primary_assembly:ASM223467v1:6:22718848:22725332:1 gene:ENSORLG00000029874.1 transcript:ENSORLT00000041026.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 67.0106 bits (162), Expect = 2.224e-16
Identity = 37/111 (33.33%), Postives = 70/111 (63.06%), Query Frame = -1 
Query:  566 RLFEAVTLKSISAEIVANAILQQ*IFR-YGVPKSIRIDRETQFESQLFQQLTEKLAIQHFRSTAYHLKINGITERLYRTLKT--SRGILSSKVNWTKL--YLLFFLVGAAH 883
            R  EAV L+ I+A ++  A+++   F  +G+PK I+ D+ T F+S++F+++ + L I+H  S++YH +  G  ER ++TLK+   +  L+S+++W +   +L+F   GA  
Sbjct:  811 RFPEAVPLRRITANVITKALVK--FFSVFGLPKVIQTDQGTNFKSKVFKEVLKGLNIRHVTSSSYHPESQGALERFHQTLKSMVRKHCLASRMSWDESLPFLMFAARGAVQ 919

HSP 2 Score: 38.1206 bits (87), Expect = 2.224e-16
Identity = 24/84 (28.57%), Postives = 37/84 (44.05%), Query Frame = -2 
Query:  895 HLGFSAAFTLLHSQVIWPAMRHEVKLWVSQCIGCQQHKITKHTKP--PIIHYPTGNR-FETLHFDLVGPLP-PDNGFSYLLTMI 1134
            HLG +  +  +     WP +R +V  +   C  CQ         P  P++  P     FE +  D VGPLP    G  ++LT++
Sbjct:  723 HLGVTKTYDRVLKHFFWPGLRSDVIHYCRTCHICQLAGKPNQVVPPAPLVPIPVHEEPFERVIVDCVGPLPKAKTGNQFILTIM 806
[Close]
BLAST of SMED30009051 vs. Ensembl Medaka
Match: ENSORLT00000031051.1 (uncharacterized LOC111947296 [Source:NCBI gene;Acc:111947296])

HSP 1 Score: 67.0106 bits (162), Expect = 5.292e-16
Identity = 37/111 (33.33%), Postives = 70/111 (63.06%), Query Frame = -1 
Query:  566 RLFEAVTLKSISAEIVANAILQQ*IFR-YGVPKSIRIDRETQFESQLFQQLTEKLAIQHFRSTAYHLKINGITERLYRTLKT--SRGILSSKVNWTKL--YLLFFLVGAAH 883
            R  EAV L+ I+A ++  A+++   F  +G+PK I+ D+ T F+S++F+++ + L I+H  S++YH +  G  ER ++TLK+   +  L+S+++W +   +L+F   GA  
Sbjct:  811 RFPEAVPLRRITANVITKALVK--FFSVFGLPKVIQTDQGTNFKSKVFKEVLKGLNIRHVTSSSYHPESQGALERFHQTLKSMVRKHCLASRMSWDESLPFLMFAARGAVQ 919

HSP 2 Score: 36.5798 bits (83), Expect = 5.292e-16
Identity = 23/84 (27.38%), Postives = 37/84 (44.05%), Query Frame = -2 
Query:  895 HLGFSAAFTLLHSQVIWPAMRHEVKLWVSQCIGCQQHKITKHTKP--PIIHYPTGNR-FETLHFDLVGPLP-PDNGFSYLLTMI 1134
            HLG +  +  +     WP ++ +V  +   C  CQ         P  P++  P     FE +  D VGPLP    G  ++LT++
Sbjct:  723 HLGVTKTYDRVLKHFFWPGLKSDVIHYCRTCHICQLAGKPNQVVPPAPLVPIPVHEEPFERVIVDCVGPLPKAKTGNQFILTIM 806
[Close]
BLAST of SMED30009051 vs. Ensembl Medaka
Match: ENSORLT00000038047.1 (pep primary_assembly:ASM223467v1:5:20995901:21001966:-1 gene:ENSORLG00000030265.1 transcript:ENSORLT00000038047.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 55.8398 bits (133), Expect = 6.445e-16
Identity = 30/80 (37.50%), Postives = 46/80 (57.50%), Query Frame = -1 
Query:  644 RLFEAVTLKSISAEIVANAILQQ*IFRYGVPKSIRIDRETQFESQLFQQLTEKLAIQHFRSTAYHLKINGITERLYRTLK 883
            R  EA  L++I+A  V  A++Q    R G+P  I  D+ T F S+L +   ++L I   ++T YH + NG+ ER  +TLK
Sbjct:  748 RFPEAFPLRTITAPAVMRALIQF-FSRVGIPDEILTDQGTNFTSRLMKLFQQQLGITAIKATPYHPQTNGLVERFNQTLK 826

HSP 2 Score: 47.3654 bits (111), Expect = 6.445e-16
Identity = 28/94 (29.79%), Postives = 46/94 (48.94%), Query Frame = -2 
Query:  892 HATHDL---HHLGFSAAFTLLHSQVIWPAMRHEVKLWVSQCIGCQQHKITKHTKPPIIH-YP-TGNRFETLHFDLVGPLP-PDNGFSYLLTMID 1155
            H  H L    HLG    +  + S+  WP+M  +++ + + C  CQ+  IT  +   ++H  P     F  +  D+VGPLP   +G  Y+L + D
Sbjct:  651 HLAHTLPWAGHLGRHKTYLRVSSRFFWPSMYTDIQTYCATCPTCQKTAITHKSDRALLHPLPIISTPFRRIAMDIVGPLPKSSSGHEYILVVCD 744
[Close]
BLAST of SMED30009051 vs. Planmine SMEST
Match: SMESG000015635.1 (SMESG000015635.1)

HSP 1 Score: 126.331 bits (316), Expect = 1.512e-33
Identity = 72/93 (77.42%), Postives = 81/93 (87.10%), Query Frame = -2 
Query:  253 LIDFDNSPTLDELDTARDHVFSIDSNPQFTTASSYTPYVPKSFKDAKNVNVSNVTDSGFKKRYYGPYKLXXXXXXXXXXXXNGVAQTINL*QL 531
            LIDFDNSPTLDELDTARDH  SIDSNPQF++ASSYTPYVPKSFKDAK+V + N+ D G K RY GPYKLIDI+DNN+HI ING+ QTINL +L
Sbjct:  119 LIDFDNSPTLDELDTARDHFLSIDSNPQFSSASSYTPYVPKSFKDAKHVYIRNIIDLGLKLRYSGPYKLIDIVDNNSHIIINGITQTINLCRL 211
[Close]
BLAST of SMED30009051 vs. Planmine SMEST
Match: SMESG000000071.1 (SMESG000000071.1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.497e-22
Identity = 33/107 (30.84%), Postives = 56/107 (52.34%), Query Frame = -2 
Query:  889 KTNFARIFT*ISFHAT-----HDLHHLGFSAAFTLLHSQVIWPAMRHEVKLWVSQCIGCQQHKITKHTKPPIIHYPTGNRFETLHFDLVGPLPPDNGFSYLLTMIDK 1194
            K N  R+   I F  T     H ++H    A + +++++ IWP MR E+K +V  C   Q +K TK      +++P+   FE +H ++VGPL P+N +     ++ K
Sbjct:  158 KENSPRLLLPIEFRNTCISKVHHINHPRNKATYKIIYNRYIWPNMRKEIKQFVKTCKRYQINKTTKKLLTQKVNFPSRQPFELIHVNIVGPLAPNNNYRQENKLVRK 264

HSP 2 Score: 58.9214 bits (141), Expect = 1.497e-22
Identity = 31/68 (45.59%), Postives = 43/68 (63.24%), Query Frame = -1 
Query:  608 IFRYGVPKSIRIDRETQFESQLFQQLTEKLAIQHFRSTAYHLKINGITERLYRTLKTSRGILSSKVNW 811
            I RYG PK+I  D+  QFESQLF+ L +   I+  R+TA++ + NG  ERL++TLK S    +   NW
Sbjct:  268 IGRYGQPKTIMTDQVRQFESQLFEMLCKIYNIKRNRTTAFNPQANGKIERLHKTLKESLRTKAEDRNW 335

HSP 3 Score: 21.9422 bits (45), Expect = 1.497e-22
Identity = 9/18 (50.00%), Postives = 11/18 (61.11%), Query Frame = -3 
Query:  543 PIVLLGWRSTPVRTTGTS 596
            P +LLG R+TP  T   S
Sbjct:  340 PTILLGLRNTPNSTDNES 357
[Close]
BLAST of SMED30009051 vs. Planmine SMEST
Match: SMESG000070163.1 (SMESG000070163.1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.578e-15
Identity = 41/85 (48.24%), Postives = 54/85 (63.53%), Query Frame = -1 
Query:    2 ISDDLSDNKPRHDLEKVCVDTSSTICNNNPSIK------RNCAYLVTNYKFNENALADVSQPVEIVSKIPHSILSIPDSQRHTNR 238
            ++  ++DN+P+ DLEKV  +TS+   NNN S+K           LVTNY+ +E   A+  QPVE VSK+PHSILS PD QR  NR
Sbjct:   41 VTQTINDNEPQPDLEKVLFETSTITFNNNSSVKTLMDSNEIAPTLVTNYQSDEKIPANALQPVETVSKLPHSILSRPDKQRPVNR 125
[Close]
BLAST of SMED30009051 vs. Planmine SMEST
Match: SMESG000038549.1 (SMESG000038549.1)

HSP 1 Score: 55.8398 bits (133), Expect = 5.108e-15
Identity = 27/76 (35.53%), Postives = 44/76 (57.89%), Query Frame = -1 
Query:  647 EAVTLKSISAEIVANAILQQ*IFRYGVPKSIRIDRETQFESQLFQQLTEKLAIQHFRSTAYHLKINGITERLYRTL 874
            EA  +K   A+ +A  ++++   RYG PK I  D+ T F S++ +++T    I   R++ YH + NG+TER   TL
Sbjct: 2648 EAFAMKDQKAKTIAQKLVEEICCRYGTPKQILTDQGTNFMSEIMKEVTNYFKIAKLRTSPYHPQCNGLTERFNGTL 2723

HSP 2 Score: 43.8986 bits (102), Expect = 5.108e-15
Identity = 24/84 (28.57%), Postives = 35/84 (41.67%), Query Frame = -2 
Query:  892 HLGFSAAFTLLHSQVIWPAMRHEVKLWVSQCIGCQQHKIT-KHTKPPIIHYPT-GNRFETLHFDLVGPLPPD-NGFSYLLTMID 1134
            H+        +  +  WP M   VK W+  C+ C   K T    K P+   P        +  D++GPLP   NG  Y+L + D
Sbjct: 2558 HMSVKKTLARMKQKYFWPNMSESVKDWIKNCLTCATRKNTGTKWKAPLKPMPVPAEPMTMISMDILGPLPETLNGNIYILVVTD 2641
[Close]
BLAST of SMED30009051 vs. Planmine SMEST
Match: SMESG000030612.1 (SMESG000030612.1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.141e-13
Identity = 46/89 (51.69%), Postives = 61/89 (68.54%), Query Frame = -2 
Query:  235 DELDTARDHVFSIDSNPQFTTASSYTPYVPKSFKDAKNVNVSNVTDSGFKKRYYGPYKLXXXXXXXXXXXXNGVAQTINL*QLKPAL*F 501
            D+L+ AR H  +I+S+PQFTT + Y PY+P++F+ A +V +    DSG K RY GP KL+ I DNNAH  I+G  QTI+L  LK AL F
Sbjct:  631 DDLELARAHFLTINSDPQFTTITKYKPYIPRAFEKATHVWIKTTFDSGLKPRYLGPRKLLKITDNNAHAIIDGQNQTISLAHLKLALGF 719
The following BLAST results are available for this feature:
BLAST of SMED30009051 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009051 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009051 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009051 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
FO704673.15.942e-1133.80pep chromosome:GRCz11:12:14545475:14551077:-1 gene... [more]
BX571665.14.598e-932.81pep chromosome:GRCz11:17:35431724:35437222:1 gene:... [more]
CU929458.14.905e-932.81pep chromosome:GRCz11:11:43363075:43368382:1 gene:... [more]
CR354395.21.851e-831.25pep chromosome:GRCz11:12:13553730:13556536:-1 gene... [more]
CR533578.33.079e-838.46pep chromosome:GRCz11:16:23466094:23471387:-1 gene... [more]
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BLAST of SMED30009051 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSXETT00000023941.11.150e-1639.42pep primary_assembly:Xenopus_tropicalis_v9.1:KV463... [more]
ENSXETT00000025355.17.790e-1532.29pep primary_assembly:Xenopus_tropicalis_v9.1:1:227... [more]
ENSXETT00000006041.11.441e-1432.29pep primary_assembly:Xenopus_tropicalis_v9.1:6:373... [more]
mybl25.034e-1430.84MYB proto-oncogene like 2 [Source:Xenbase;Acc:XB-G... [more]
nmbr4.961e-1331.71neuromedin B receptor [Source:Xenbase;Acc:XB-GENE-... [more]
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BLAST of SMED30009051 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009051 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|P10394|POL4_DROME4.688e-1131.31Retrovirus-related Pol polyprotein from transposon... [more]
sp|P23074|POL_SFV17.349e-1132.97Pro-Pol polyprotein OS=Simian foamy virus type 1 O... [more]
sp|P27401|POL_SFV3L1.328e-929.89Pro-Pol polyprotein OS=Simian foamy virus type 3 (... [more]
sp|Q87040|POL_SFVCP2.199e-830.23Pro-Pol polyprotein OS=Simian foamy virus (isolate... [more]
sp|O93209|POL_FFV2.607e-827.47Pro-Pol polyprotein OS=Feline foamy virus OX=53182... [more]
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BLAST of SMED30009051 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A139W8U71.394e-3545.05Uncharacterized protein OS=Tribolium castaneum OX=... [more]
A0A430QE183.035e-3541.76Uncharacterized protein OS=Schistosoma bovis OX=61... [more]
A0A430QDQ53.163e-3541.76Uncharacterized protein OS=Schistosoma bovis OX=61... [more]
A0A085MC241.111e-3439.58Uncharacterized protein (Fragment) OS=Trichuris su... [more]
A0A5S6QCX02.708e-3441.30Uncharacterized protein OS=Trichuris muris OX=7041... [more]
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BLAST of SMED30009051 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSAMXT00000037741.17.879e-1937.23pep primary_assembly:Astyanax_mexicanus-2.0:6:2778... [more]
ENSAMXT00000033239.11.315e-1630.11pep primary_assembly:Astyanax_mexicanus-2.0:APWO02... [more]
ENSAMXT00000039359.17.802e-1632.69pep primary_assembly:Astyanax_mexicanus-2.0:5:1935... [more]
ENSAMXT00000042253.11.023e-1529.03pep primary_assembly:Astyanax_mexicanus-2.0:APWO02... [more]
ENSAMXT00000036301.11.127e-1529.00pep primary_assembly:Astyanax_mexicanus-2.0:15:288... [more]
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BLAST of SMED30009051 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009051 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009051 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009051 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSORLT00000043660.11.006e-1635.58pep primary_assembly:ASM223467v1:15:27996403:27998... [more]
ENSORLT00000033056.11.700e-1635.58pep primary_assembly:ASM223467v1:23:165526:166795:... [more]
ENSORLT00000041026.12.224e-1633.33pep primary_assembly:ASM223467v1:6:22718848:227253... [more]
ENSORLT00000031051.15.292e-1633.33uncharacterized LOC111947296 [Source:NCBI gene;Acc... [more]
ENSORLT00000038047.16.445e-1637.50pep primary_assembly:ASM223467v1:5:20995901:210019... [more]
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BLAST of SMED30009051 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000015635.11.512e-3377.42SMESG000015635.1[more]
SMESG000000071.11.497e-2230.84SMESG000000071.1[more]
SMESG000070163.12.578e-1548.24SMESG000070163.1[more]
SMESG000038549.15.108e-1535.53SMESG000038549.1[more]
SMESG000030612.11.141e-1351.69SMESG000030612.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30009051 ID=SMED30009051|Name=SMED30009051|organism=Schmidtea mediterranea sexual|type=transcript|length=1396bp
CTCTGTTCGTGTGTCGCTGACTGTCTGGTATAGAAAGAATTGAGTGAGGT
ATTTTTGATACTATTTCTACAGGTTGTGACACATCGGCAAGTGCGTTTTC
GTTGAATTTGTAATTTGTAACCAGGTACGCGCAATTTCGTTTAATTGAAG
GATTGTTGTTACATATGGTTGAAGAGGTATCCACACAAACCTTCTCTAAA
TCGTGTCGAGGTTTGTTGTCACTCAAATCGTCGGAAATTACAAAGCCGGT
TTAAGTTGCTACAAATTAATGGTTTGGGCTACCCCGTTGATGTTGATGTG
AGCATTGTTGTCTATTATGTCAATTAATTTATACGGACCATAATATCTCT
TTTTGAAACCTGAGTCGGTAACATTACTAACGTTAACGTTTTTAGCATCT
TTAAATGACTTTGGAACGTATGGTGTATAGGATGATGCAGTTGTAAACTG
AGGGTTACTGTCGATCGAAAAAACGTGATCTCTAGCAGTATCTAATTCAT
CCAAAGTAGGAGAATTATCAAAATCGATTAGCAATTGCAAATGGAAGTCC
CCGTAGTTCTTACAGGTGTGCTGCGCCAACCAAGAAGAACAATAGGTAAA
GCTTGGTCCAGTTAACTTTAGAAGAAAGTATTCCACGAGAGGTCTTTAAA
GTTCGGTATAATCTTTCAGTAATGCCGTTTATCTTAAGGTGATAGGCAGT
TGATCGAAAATGTTGAATAGCAAGTTTTTCGGTTAATTGTTGGAACAATT
GGGACTCAAATTGAGTTTCTCTGTCGATTCTTATTGATTTGGGAACTCCG
TATCTGAAAATCTATTGTTGGAGAATGGCATTTGCCACAATTTCAGCAGA
AATGCTTTTTAAAGTGACCGCCTCAAATAAACGCCTTTTTTGTCAATCAT
GGTTAATAGGTAAGAGAAACCATTGTCAGGAGGTAAAGGACCAACAAGGT
CGAAATGTAGAGTTTCAAACCTATTTCCAGTTGGGTAATGAATTATAGGT
GGTTTGGTATGTTTAGTGATCTTGTGCTGTTGACATCCGATACACTGACT
AACCCATAGTTTAACCTCATGTCTCATTGCTGGCCAAATCACCTGAGAGT
GTAACAGAGTGAAAGCAGCTGAAAAACCTAGGTGGTGTAAATCGTGAGTG
GCATGAAAGCTGATTTATGTAAAGATTCGTGCAAAATTGGTCTTAGTACA
CCGGATAAAGACGAATCAAAATGTATATCATCTACTATTTATAGTTTATC
ACCGAAGGAGGGTAAGGCTCAAAGGTAAATCGGAGTCAGGAATGTCAGTA
CAATTATAATATTAATTTGCTTTATCCAAAAACCTTGAATCTGAATTTTT
AAAATAAATCTGCTCACCCCCTTATATGCCCCCAACTGTCCCTTCA
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000034epidermis
PLANA:0000101muscle cell
PLANA:0000142posterior region of the whole animal
PLANA:0003001lateral region of the whole animal
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR012337RNaseH-like_sf
Vocabulary: biological process
TermDefinition
GO:0015074DNA integration
Vocabulary: molecular function
TermDefinition
GO:0003676nucleic acid binding