Zinc finger CCCH domain-containing protein 4

Overview
NameZinc finger CCCH domain-containing protein 4
Smed IDSMED30009035
Length (bp)4569
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Zinc finger CCCH domain-containing protein 4 (SMED30009035) t-SNE clustered cells

Violin plots show distribution of expression levels for Zinc finger CCCH domain-containing protein 4 (SMED30009035) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Zinc finger CCCH domain-containing protein 4 (SMED30009035) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Zinc finger CCCH domain-containing protein 4 (SMED30009035) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30009035

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 8

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30009035SMESG000038705.1 SmedASXL_016273SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30009035SMESG000038705.1 SmedASXL_016273SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
nervous systemSMED30009035SMESG000038705.1 dd_Smed_v4_6243_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30009035SMESG000038705.1 dd_Smed_v4_6243_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30009035SMESG000038705.1 dd_Smed_v4_6243_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neuronSMED30009035SMESG000038705.1 dd_Smed_v4_6243_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		whole organism asexual adult colorimetric in situ hybridization evidence
neoblastSMED30009035SMESG000038705.1 dd_Smed_v4_6243_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30009035SMESG000038705.1 dd_Smed_v6_6243_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Zinc finger CCCH domain-containing protein 4 vs. Ensembl Human
Match: ZC3H6 (zinc finger CCCH-type containing 6 [Source:HGNC Symbol;Acc:HGNC:24762])

HSP 1 Score: 102.449 bits (254), Expect = 3.969e-21
Identity = 45/102 (44.12%), Postives = 67/102 (65.69%), Query Frame = 1 
Query: 2446 QNEKRNVCKYFSMGSCRHGDRCTYLHESPNKPAPQEPKKKELCRFYEHQQCYKRSNCSYMHEEFPCKLFHAGSKMCPSGDSCKYSHAPLNQETRALLEKYLD 2751
            +++ + +CKYF  G C  GD+C + H++      +  K+KE+C+FY    C K  NC YMH EFPCK +H+G+K C  GD+CK+SH  L +ET+ LL+K L+
Sbjct:  271 EHKGKQICKYFLEGRCIKGDQCKFDHDA------ELEKRKEICKFYLQGYCTKGENCIYMHNEFPCKFYHSGAK-CYQGDNCKFSHDDLTKETKKLLDKVLN 365
[Close]
BLAST of Zinc finger CCCH domain-containing protein 4 vs. Ensembl Human
Match: ZC3H6 (zinc finger CCCH-type containing 6 [Source:HGNC Symbol;Acc:HGNC:24762])

HSP 1 Score: 102.449 bits (254), Expect = 3.969e-21
Identity = 45/102 (44.12%), Postives = 67/102 (65.69%), Query Frame = 1 
Query: 2446 QNEKRNVCKYFSMGSCRHGDRCTYLHESPNKPAPQEPKKKELCRFYEHQQCYKRSNCSYMHEEFPCKLFHAGSKMCPSGDSCKYSHAPLNQETRALLEKYLD 2751
            +++ + +CKYF  G C  GD+C + H++      +  K+KE+C+FY    C K  NC YMH EFPCK +H+G+K C  GD+CK+SH  L +ET+ LL+K L+
Sbjct:  271 EHKGKQICKYFLEGRCIKGDQCKFDHDA------ELEKRKEICKFYLQGYCTKGENCIYMHNEFPCKFYHSGAK-CYQGDNCKFSHDDLTKETKKLLDKVLN 365
[Close]
BLAST of Zinc finger CCCH domain-containing protein 4 vs. Ensembl Human
Match: ZC3H4 (zinc finger CCCH-type containing 4 [Source:HGNC Symbol;Acc:HGNC:17808])

HSP 1 Score: 100.908 bits (250), Expect = 9.880e-21
Identity = 53/124 (42.74%), Postives = 70/124 (56.45%), Query Frame = 1 
Query: 2446 QNEKRN--VCKYFSMGSCRHGDRCTYLHESPNKPAPQEPKKKELCRFYEHQQCYKRSNCSYMHEEFPCKLFHAGSKMCPSGDSCKYSHAPLNQETRALLEKYL---------DEKVDERTDKNG 2784
            Q++K+   +CKYF  G C  GD C + H+       + PKK+ELC+FY    C +  NC YMH +FPCKL+H  +  C +GD C +SH PL +ETR LL+K L         DEK  E   K G
Sbjct:   78 QSDKKGKVICKYFVEGRCTWGDHCNFSHDI------ELPKKRELCKFYITGFCARAENCPYMHGDFPCKLYHT-TGNCINGDDCMFSHDPLTEETRELLDKMLADDAEAGAEDEKEVEELKKQG 194
[Close]
BLAST of Zinc finger CCCH domain-containing protein 4 vs. Ensembl Human
Match: ZC3H8 (zinc finger CCCH-type containing 8 [Source:HGNC Symbol;Acc:HGNC:30941])

HSP 1 Score: 95.9005 bits (237), Expect = 1.220e-20
Identity = 44/98 (44.90%), Postives = 61/98 (62.24%), Query Frame = 1 
Query: 2458 RNVCKYFSMGSCRHGDRCTYLHESPNKPAPQEPKKKELCRFYEHQQCYKRSNCSYMHEEFPCKLFHAGSKMCPSGDSCKYSHAPLNQETRALLEKYLD 2751
            + +CKYF    C  GD+C + H++      +  KKKE+C+FY    C +  NC Y+H E+PCK +H G+K C  G+ CK+SHAPL  ET+ LL K LD
Sbjct:  194 KQICKYFLERKCIKGDQCKFDHDA------EIEKKKEMCKFYVQGYCTRGENCLYLHNEYPCKFYHTGTK-CYQGEYCKFSHAPLTPETQELLAKVLD 284
[Close]
BLAST of Zinc finger CCCH domain-containing protein 4 vs. Ensembl Human
Match: ZC3H8 (zinc finger CCCH-type containing 8 [Source:HGNC Symbol;Acc:HGNC:30941])

HSP 1 Score: 95.5153 bits (236), Expect = 1.475e-20
Identity = 44/98 (44.90%), Postives = 61/98 (62.24%), Query Frame = 1 
Query: 2458 RNVCKYFSMGSCRHGDRCTYLHESPNKPAPQEPKKKELCRFYEHQQCYKRSNCSYMHEEFPCKLFHAGSKMCPSGDSCKYSHAPLNQETRALLEKYLD 2751
            + +CKYF    C  GD+C + H++      +  KKKE+C+FY    C +  NC Y+H E+PCK +H G+K C  G+ CK+SHAPL  ET+ LL K LD
Sbjct:  194 KQICKYFLERKCIKGDQCKFDHDA------EIEKKKEMCKFYVQGYCTRGENCLYLHNEYPCKFYHTGTK-CYQGEYCKFSHAPLTPETQELLAKVLD 284
[Close]
BLAST of Zinc finger CCCH domain-containing protein 4 vs. Ensembl Celegans
Match: T26A8.4 (pep chromosome:WBcel235:IV:8428961:8431493:-1 gene:WBGene00020827.1 transcript:T26A8.4.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:T26A8.4)

HSP 1 Score: 82.0333 bits (201), Expect = 1.556e-15
Identity = 40/98 (40.82%), Postives = 53/98 (54.08%), Query Frame = 1 
Query: 2455 KRNVCKYFSMGSCRHGDRCTYLHESPNKPAPQEPKKKELCRFYEHQQCYKRSNCSYMHEEFPCKLFHAGSKMCPSGDSCKYSHAPLNQETRALLEKYL 2748
            +  +CK+F  G CR GD C Y H+     A    ++  LC FY +  C K   C  +H EFPCK FH G   C + D C++SH PL   TR ++EK L
Sbjct:  167 EHQICKFFREGYCRDGDNCLYSHQ-----AEDSLRRPVLCNFYANSFCKKGLQCLMLHGEFPCKSFHKG--QC-NHDPCRFSHVPLTDYTRPIIEKIL 256
[Close]
BLAST of Zinc finger CCCH domain-containing protein 4 vs. Ensembl Fly
Match: su(sable) (gene:FBgn0003575 transcript:FBtr0340081)

HSP 1 Score: 73.1738 bits (178), Expect = 2.010e-12
Identity = 32/68 (47.06%), Postives = 46/68 (67.65%), Query Frame = 1 
Query: 2551 EPKKKELCRFYEHQQCYKRSNCSYMHEEFPCKLFHAGSKMCPSGDSCKYSHA-PLNQETRALLEKYLD 2751
            EP+K ELC+FY    C KR  CSYMH+EFPCK ++ G   C +GD C + H  PL+++ R +L K+++
Sbjct:  329 EPRKLELCKFYLMDCCAKRDKCSYMHKEFPCKYYYLGMD-CYAGDDCLFYHGEPLSEQLRNVLLKHME 395
[Close]
BLAST of Zinc finger CCCH domain-containing protein 4 vs. Ensembl Fly
Match: su(sable) (gene:FBgn0003575 transcript:FBtr0070120)

HSP 1 Score: 73.1738 bits (178), Expect = 2.046e-12
Identity = 32/68 (47.06%), Postives = 46/68 (67.65%), Query Frame = 1 
Query: 2551 EPKKKELCRFYEHQQCYKRSNCSYMHEEFPCKLFHAGSKMCPSGDSCKYSHA-PLNQETRALLEKYLD 2751
            EP+K ELC+FY    C KR  CSYMH+EFPCK ++ G   C +GD C + H  PL+++ R +L K+++
Sbjct:  329 EPRKLELCKFYLMDCCAKRDKCSYMHKEFPCKYYYLGMD-CYAGDDCLFYHGEPLSEQLRNVLLKHME 395
[Close]
BLAST of Zinc finger CCCH domain-containing protein 4 vs. Ensembl Fly
Match: su(sable) (gene:FBgn0003575 transcript:FBtr0340082)

HSP 1 Score: 73.1738 bits (178), Expect = 2.046e-12
Identity = 32/68 (47.06%), Postives = 46/68 (67.65%), Query Frame = 1 
Query: 2551 EPKKKELCRFYEHQQCYKRSNCSYMHEEFPCKLFHAGSKMCPSGDSCKYSHA-PLNQETRALLEKYLD 2751
            EP+K ELC+FY    C KR  CSYMH+EFPCK ++ G   C +GD C + H  PL+++ R +L K+++
Sbjct:  329 EPRKLELCKFYLMDCCAKRDKCSYMHKEFPCKYYYLGMD-CYAGDDCLFYHGEPLSEQLRNVLLKHME 395
[Close]
BLAST of Zinc finger CCCH domain-containing protein 4 vs. Ensembl Zebrafish
Match: zc3h6 (zinc finger CCCH-type containing 6 [Source:ZFIN;Acc:ZDB-GENE-120727-18])

HSP 1 Score: 97.8265 bits (242), Expect = 7.009e-20
Identity = 49/105 (46.67%), Postives = 65/105 (61.90%), Query Frame = 1 
Query: 2458 RNVCKYFSMGSCRHGDRCTYLHESPNKPAPQEPKKKELCRFYEHQQCYKRSNCSYMHEEFPCKLFHAGSKMCPSGDSCKYSHAPLNQETRALLEKYLDEKVDERT 2772
            R++CKYF  G C  GD+C + H++     P+  KKKELC+FY    C K   C Y+  E+PCK FH G+K C  GD+CK+SH PL   T+ LL+K L+   DE T
Sbjct:  228 RHICKYFLEGRCIKGDQCKFEHDNV---VPE--KKKELCKFYVQGYCTKGDICIYILREYPCKFFHTGAK-CYQGDNCKFSHEPLTDVTKELLDKILN--TDEET 324
[Close]
BLAST of Zinc finger CCCH domain-containing protein 4 vs. Ensembl Zebrafish
Match: zc3h4 (zinc finger CCCH-type containing 4 [Source:ZFIN;Acc:ZDB-GENE-100330-1])

HSP 1 Score: 95.5153 bits (236), Expect = 4.006e-19
Identity = 43/106 (40.57%), Postives = 63/106 (59.43%), Query Frame = 1 
Query: 2446 QNEKRNVCKYFSMGSCRHGDRCTYLHESPNKPAPQEPKKKELCRFYEHQQCYKRSNCSYMHEEFPCKLFHAGSKMCPSGDSCKYSHAPLNQETRALLEKYLDEKVD 2763
            + + + +CKY+  G C  GD C + H+       + PKKKELC+FY    C +  NC YMH +FPCKLFH  +  C +G+ C +SH  L ++T+ LL+K L E  +
Sbjct:  361 EKKGKAICKYYIEGRCTWGDHCNFSHDI------ELPKKKELCKFYITGFCARAENCPYMHGDFPCKLFHT-TGNCVNGEECMFSHDSLTEDTQELLDKMLAEDAE 459
[Close]
BLAST of Zinc finger CCCH domain-containing protein 4 vs. Ensembl Zebrafish
Match: mkrn4 (makorin, ring finger protein, 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5954])

HSP 1 Score: 52.7582 bits (125), Expect = 2.673e-7
Identity = 24/60 (40.00%), Postives = 34/60 (56.67%), Query Frame = 1 
Query: 2449 NEKRNVCKYFSMGSCRHGDRCTYLHESPNKPAPQEPKKKELCRFYEHQQCYKRSNCSYMH 2628
            N +R VC+ F  GSCR+G  C YLHE P+ P+ Q       CR+++   C+    C Y+H
Sbjct:   17 NAEREVCRQFINGSCRYGQSCYYLHEFPSVPSFQVQ-----CRYFQKGGCWFGDRCRYLH 71
[Close]
BLAST of Zinc finger CCCH domain-containing protein 4 vs. Ensembl Xenopus
Match: zc3h6 (zinc finger CCCH type containing 6 [Source:NCBI gene;Acc:100124753])

HSP 1 Score: 105.531 bits (262), Expect = 4.113e-22
Identity = 48/114 (42.11%), Postives = 71/114 (62.28%), Query Frame = 1 
Query: 2446 QNEKRNVCKYFSMGSCRHGDRCTYLHESPNKPAPQEPKKKELCRFYEHQQCYKRSNCSYMHEEFPCKLFHAGSKMCPSGDSCKYSHAPLNQETRALLEKYLDEKVDERTDKNGS 2787
            +++ + +CKYF    C  GD+C + H++      +  KK+E+C+FY    C K  NC YMH EFPCK +H G+K C  GD+CK+SH PL  +TR LL K L+ +  +  D+NG+
Sbjct:  265 EHKGKQICKYFLEKRCIKGDQCKFDHDA------EIGKKREICKFYIQGYCTKGDNCLYMHNEFPCKFYHTGAK-CYQGDNCKFSHDPLTDDTRELLHKVLNTEEVQHEDENGA 371
[Close]
BLAST of Zinc finger CCCH domain-containing protein 4 vs. Ensembl Xenopus
Match: iqcb1 (IQ motif containing B1 [Source:Xenbase;Acc:XB-GENE-975373])

HSP 1 Score: 91.2781 bits (225), Expect = 1.083e-17
Identity = 40/100 (40.00%), Postives = 58/100 (58.00%), Query Frame = 1 
Query: 2464 VCKYFSMGSCRHGDRCTYLHESPNKPAPQEPKKKELCRFYEHQQCYKRSNCSYMHEEFPCKLFHAGSKMCPSGDSCKYSHAPLNQETRALLEKYLDEKVD 2763
            VCKYF  G C  G+ C + H+       + P+++ LC+FY    C +  NC +MH +FPCKL+H  +  C +G+ C +SH PL  ET+ LL K L E  +
Sbjct:  359 VCKYFVEGRCTWGEHCNFSHDV------EVPRRRGLCKFYVSGYCARAENCPFMHNDFPCKLYHT-TGNCINGEDCMFSHEPLTDETQELLNKILAEDAE 451
[Close]
BLAST of Zinc finger CCCH domain-containing protein 4 vs. Ensembl Xenopus
Match: zc3h6 (zinc finger CCCH type containing 6 [Source:NCBI gene;Acc:100124753])

HSP 1 Score: 86.6557 bits (213), Expect = 2.439e-16
Identity = 43/114 (37.72%), Postives = 66/114 (57.89%), Query Frame = 1 
Query: 2446 QNEKRNVCKYFSMGSCRHGDRCTYLHESPNKPAPQEPKKKELCRFYEHQQCYKRSNCSYMHEEFPCKLFHAGSKMCPSGDSCKYSHAPLNQETRALLEKYLDEKVDERTDKNGS 2787
            +++ + +CKYF    C  GD+C + H++      +  KK+E+C+FY    C K  NC YMH       +H G+K C  GD+CK+SH PL  +TR LL K L+ +  +  D+NG+
Sbjct:  239 EHKGKQICKYFLEKRCIKGDQCKFDHDA------EIGKKREICKFYIQGYCTKGDNCLYMHNIL-FYFYHTGAK-CYQGDNCKFSHDPLTDDTRELLHKVLNTEEVQHEDENGA 344
[Close]
BLAST of Zinc finger CCCH domain-containing protein 4 vs. Ensembl Mouse
Match: Zc3h6 (zinc finger CCCH type containing 6 [Source:MGI Symbol;Acc:MGI:1926001])

HSP 1 Score: 103.219 bits (256), Expect = 1.601e-21
Identity = 46/102 (45.10%), Postives = 65/102 (63.73%), Query Frame = 1 
Query: 2446 QNEKRNVCKYFSMGSCRHGDRCTYLHESPNKPAPQEPKKKELCRFYEHQQCYKRSNCSYMHEEFPCKLFHAGSKMCPSGDSCKYSHAPLNQETRALLEKYLD 2751
            +++ + +CKYF  G C  GD C + H++      +  KKKE+C++Y    C K  NC YMH EFPCK +H+G+K C  GD CK+SH  L +ETR LL+K L+
Sbjct:  269 EHKGKQICKYFLEGRCIKGDHCKFNHDA------ELEKKKEVCKYYLQGYCTKGENCIYMHSEFPCKFYHSGAK-CYQGDKCKFSHDDLTKETRKLLDKVLN 363
[Close]
BLAST of Zinc finger CCCH domain-containing protein 4 vs. Ensembl Mouse
Match: Zc3h8 (zinc finger CCCH type containing 8 [Source:MGI Symbol;Acc:MGI:1930128])

HSP 1 Score: 97.4413 bits (241), Expect = 3.171e-21
Identity = 45/98 (45.92%), Postives = 60/98 (61.22%), Query Frame = 1 
Query: 2458 RNVCKYFSMGSCRHGDRCTYLHESPNKPAPQEPKKKELCRFYEHQQCYKRSNCSYMHEEFPCKLFHAGSKMCPSGDSCKYSHAPLNQETRALLEKYLD 2751
            + VCKYF    C  GD+C + H++      +  KKKE+C++Y    C K  NC Y+H E+PCK +H G+K C  GD C +SHAPL  ET+ LL K LD
Sbjct:  208 KQVCKYFLERKCIKGDQCKFDHDA------EIEKKKEMCKYYVQGYCTKGENCLYLHSEYPCKFYHTGTK-CYQGDHCNFSHAPLTAETQELLAKVLD 298
[Close]
BLAST of Zinc finger CCCH domain-containing protein 4 vs. Ensembl Mouse
Match: Zc3h4 (zinc finger CCCH-type containing 4 [Source:MGI Symbol;Acc:MGI:2682314])

HSP 1 Score: 99.7525 bits (247), Expect = 2.146e-20
Identity = 53/124 (42.74%), Postives = 70/124 (56.45%), Query Frame = 1 
Query: 2446 QNEKRN--VCKYFSMGSCRHGDRCTYLHESPNKPAPQEPKKKELCRFYEHQQCYKRSNCSYMHEEFPCKLFHAGSKMCPSGDSCKYSHAPLNQETRALLEKYL---------DEKVDERTDKNG 2784
            Q++K+   +CKYF  G C  GD C + H+       + PKK+ELC+FY    C +  NC YMH +FPCKL+H  +  C +GD C +SH PL +ETR LL+K L         DEK  E   K G
Sbjct:  345 QSDKKGKVICKYFVEGRCTWGDHCNFSHDI------ELPKKRELCKFYITGFCARAENCPYMHGDFPCKLYHT-TGNCINGDDCMFSHDPLTEETRELLDKMLADDAEAGAEDEKEVEELKKQG 461
[Close]
BLAST of Zinc finger CCCH domain-containing protein 4 vs. Ensembl Mouse
Match: Zc3h4 (zinc finger CCCH-type containing 4 [Source:MGI Symbol;Acc:MGI:2682314])

HSP 1 Score: 99.3673 bits (246), Expect = 2.815e-20
Identity = 51/116 (43.97%), Postives = 65/116 (56.03%), Query Frame = 1 
Query: 2464 VCKYFSMGSCRHGDRCTYLHESPNKPAPQEPKKKELCRFYEHQQCYKRSNCSYMHEEFPCKLFHAGSKMCPSGDSCKYSHAPLNQETRALLEKYL---------DEKVDERTDKNG 2784
            +CKYF  G C  GD C + H+       + PKK+ELC+FY    C +  NC YMH +FPCKL+H  +  C +GD C +SH PL +ETR LL+K L         DEK  E   K G
Sbjct:  345 ICKYFVEGRCTWGDHCNFSHDI------ELPKKRELCKFYITGFCARAENCPYMHGDFPCKLYHT-TGNCINGDDCMFSHDPLTEETRELLDKMLADDAEAGAEDEKEVEELKKQG 453
[Close]
BLAST of Zinc finger CCCH domain-containing protein 4 vs. UniProt/SwissProt
Match: sp|Q8BYK8|ZC3H6_MOUSE (Zinc finger CCCH domain-containing protein 6 OS=Mus musculus OX=10090 GN=Zc3h6 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.139e-20
Identity = 46/102 (45.10%), Postives = 65/102 (63.73%), Query Frame = 1 
Query: 2446 QNEKRNVCKYFSMGSCRHGDRCTYLHESPNKPAPQEPKKKELCRFYEHQQCYKRSNCSYMHEEFPCKLFHAGSKMCPSGDSCKYSHAPLNQETRALLEKYLD 2751
            +++ + +CKYF  G C  GD C + H++      +  KKKE+C++Y    C K  NC YMH EFPCK +H+G+K C  GD CK+SH  L +ETR LL+K L+
Sbjct:  269 EHKGKQICKYFLEGRCIKGDHCKFNHDA------ELEKKKEVCKYYLQGYCTKGENCIYMHSEFPCKFYHSGAK-CYQGDKCKFSHDDLTKETRKLLDKVLN 363
[Close]
BLAST of Zinc finger CCCH domain-containing protein 4 vs. UniProt/SwissProt
Match: sp|P61129|ZC3H6_HUMAN (Zinc finger CCCH domain-containing protein 6 OS=Homo sapiens OX=9606 GN=ZC3H6 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 1.906e-20
Identity = 45/102 (44.12%), Postives = 67/102 (65.69%), Query Frame = 1 
Query: 2446 QNEKRNVCKYFSMGSCRHGDRCTYLHESPNKPAPQEPKKKELCRFYEHQQCYKRSNCSYMHEEFPCKLFHAGSKMCPSGDSCKYSHAPLNQETRALLEKYLD 2751
            +++ + +CKYF  G C  GD+C + H++      +  K+KE+C+FY    C K  NC YMH EFPCK +H+G+K C  GD+CK+SH  L +ET+ LL+K L+
Sbjct:  271 EHKGKQICKYFLEGRCIKGDQCKFDHDA------ELEKRKEICKFYLQGYCTKGENCIYMHNEFPCKFYHSGAK-CYQGDNCKFSHDDLTKETKKLLDKVLN 365
[Close]
BLAST of Zinc finger CCCH domain-containing protein 4 vs. UniProt/SwissProt
Match: sp|Q9JJ48|ZC3H8_MOUSE (Zinc finger CCCH domain-containing protein 8 OS=Mus musculus OX=10090 GN=Zc3h8 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 2.218e-20
Identity = 45/98 (45.92%), Postives = 60/98 (61.22%), Query Frame = 1 
Query: 2458 RNVCKYFSMGSCRHGDRCTYLHESPNKPAPQEPKKKELCRFYEHQQCYKRSNCSYMHEEFPCKLFHAGSKMCPSGDSCKYSHAPLNQETRALLEKYLD 2751
            + VCKYF    C  GD+C + H++      +  KKKE+C++Y    C K  NC Y+H E+PCK +H G+K C  GD C +SHAPL  ET+ LL K LD
Sbjct:  208 KQVCKYFLERKCIKGDQCKFDHDA------EIEKKKEMCKYYVQGYCTKGENCLYLHSEYPCKFYHTGTK-CYQGDHCNFSHAPLTAETQELLAKVLD 298
[Close]
BLAST of Zinc finger CCCH domain-containing protein 4 vs. UniProt/SwissProt
Match: sp|Q8N5P1|ZC3H8_HUMAN (Zinc finger CCCH domain-containing protein 8 OS=Homo sapiens OX=9606 GN=ZC3H8 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 7.084e-20
Identity = 44/98 (44.90%), Postives = 61/98 (62.24%), Query Frame = 1 
Query: 2458 RNVCKYFSMGSCRHGDRCTYLHESPNKPAPQEPKKKELCRFYEHQQCYKRSNCSYMHEEFPCKLFHAGSKMCPSGDSCKYSHAPLNQETRALLEKYLD 2751
            + +CKYF    C  GD+C + H++      +  KKKE+C+FY    C +  NC Y+H E+PCK +H G+K C  G+ CK+SHAPL  ET+ LL K LD
Sbjct:  194 KQICKYFLERKCIKGDQCKFDHDA------EIEKKKEMCKFYVQGYCTRGENCLYLHNEYPCKFYHTGTK-CYQGEYCKFSHAPLTPETQELLAKVLD 284
[Close]
BLAST of Zinc finger CCCH domain-containing protein 4 vs. UniProt/SwissProt
Match: sp|Q9UPT8|ZC3H4_HUMAN (Zinc finger CCCH domain-containing protein 4 OS=Homo sapiens OX=9606 GN=ZC3H4 PE=1 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 1.694e-19
Identity = 53/124 (42.74%), Postives = 70/124 (56.45%), Query Frame = 1 
Query: 2446 QNEKRN--VCKYFSMGSCRHGDRCTYLHESPNKPAPQEPKKKELCRFYEHQQCYKRSNCSYMHEEFPCKLFHAGSKMCPSGDSCKYSHAPLNQETRALLEKYL---------DEKVDERTDKNG 2784
            Q++K+   +CKYF  G C  GD C + H+       + PKK+ELC+FY    C +  NC YMH +FPCKL+H  +  C +GD C +SH PL +ETR LL+K L         DEK  E   K G
Sbjct:  387 QSDKKGKVICKYFVEGRCTWGDHCNFSHDI------ELPKKRELCKFYITGFCARAENCPYMHGDFPCKLYHT-TGNCINGDDCMFSHDPLTEETRELLDKMLADDAEAGAEDEKEVEELKKQG 503
[Close]
BLAST of Zinc finger CCCH domain-containing protein 4 vs. TrEMBL
Match: G3WVY8 (Zinc finger CCCH-type containing 6 OS=Sarcophilus harrisii OX=9305 GN=ZC3H6 PE=4 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 5.015e-20
Identity = 48/102 (47.06%), Postives = 67/102 (65.69%), Query Frame = 1 
Query: 2446 QNEKRNVCKYFSMGSCRHGDRCTYLHESPNKPAPQEPKKKELCRFYEHQQCYKRSNCSYMHEEFPCKLFHAGSKMCPSGDSCKYSHAPLNQETRALLEKYLD 2751
            +++ + +CKYF  G C  GD+C + H++      +  KKKE+C+FY    C K  NC YMH EFPCK +H G+K C  GD CK+SHAPL +ET+ LL+K L+
Sbjct:   67 EHKGKQICKYFLEGRCIKGDQCKFDHDA------ELEKKKEICKFYIQGYCTKGENCIYMHNEFPCKFYHTGAK-CYQGDKCKFSHAPLTKETKELLDKVLN 161
[Close]
BLAST of Zinc finger CCCH domain-containing protein 4 vs. TrEMBL
Match: A0A4X2L7P2 (Zinc finger CCCH-type containing 6 OS=Vombatus ursinus OX=29139 GN=ZC3H6 PE=4 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 5.222e-20
Identity = 48/102 (47.06%), Postives = 67/102 (65.69%), Query Frame = 1 
Query: 2446 QNEKRNVCKYFSMGSCRHGDRCTYLHESPNKPAPQEPKKKELCRFYEHQQCYKRSNCSYMHEEFPCKLFHAGSKMCPSGDSCKYSHAPLNQETRALLEKYLD 2751
            +++ + +CKYF  G C  GD+C + H++      +  KKKE+C+FY    C K  NC YMH EFPCK +H G+K C  GD CK+SHAPL +ET+ LL+K L+
Sbjct:  143 EHKGKQICKYFLEGRCIKGDQCKFDHDA------ELEKKKEICKFYIQGYCTKGENCIYMHNEFPCKFYHTGAK-CYQGDKCKFSHAPLTKETKELLDKVLN 237
[Close]
BLAST of Zinc finger CCCH domain-containing protein 4 vs. TrEMBL
Match: A0A3Q0GPZ1 (LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 6 OS=Alligator sinensis OX=38654 GN=ZC3H6 PE=4 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 7.919e-20
Identity = 54/122 (44.26%), Postives = 71/122 (58.20%), Query Frame = 1 
Query: 2446 QNEKRNVCKYFSMGSCRHGDRCTYLHESPNKPAPQEPKKKELCRFYEHQQCYKRSNCSYMHEEFPCKLFHAGSKMCPSGDSCKYSHAPLNQETRALLEKYL---------DEKVDERTDKNG 2784
            +++ + +CKYF  G C  GD+C + H++      +  KKKE+C+FY    C K  NC YMH EFPCK +H G+K C  GD CK+SHAPL  ET+ LL+K L         DEK  E   K G
Sbjct:  257 EHKGKQICKYFLEGRCIKGDQCKFDHDA------EIEKKKEICKFYIQGYCTKGENCIYMHNEFPCKFYHTGAK-CYQGDKCKFSHAPLTAETKELLDKVLNTEEEPQNEDEKELEELRKRG 371
[Close]
BLAST of Zinc finger CCCH domain-containing protein 4 vs. TrEMBL
Match: F7DDT2 (Zinc finger CCCH-type containing 6 OS=Ornithorhynchus anatinus OX=9258 GN=ZC3H6 PE=4 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 8.317e-20
Identity = 48/102 (47.06%), Postives = 67/102 (65.69%), Query Frame = 1 
Query: 2446 QNEKRNVCKYFSMGSCRHGDRCTYLHESPNKPAPQEPKKKELCRFYEHQQCYKRSNCSYMHEEFPCKLFHAGSKMCPSGDSCKYSHAPLNQETRALLEKYLD 2751
            +++ + +CKYF  G C  GD+C + H++      +  KKKE+C+FY    C K  NC YMH EFPCK +H G+K C  GD CK+SHAPL +ET+ LL+K L+
Sbjct:  243 EHKGKQICKYFLEGRCIKGDQCKFDHDA------ELEKKKEICKFYIQGYCTKGENCIYMHNEFPCKFYHTGAK-CYQGDKCKFSHAPLTKETKELLDKVLN 337
[Close]
BLAST of Zinc finger CCCH domain-containing protein 4 vs. TrEMBL
Match: F7DDS5 (Zinc finger CCCH-type containing 6 OS=Ornithorhynchus anatinus OX=9258 GN=ZC3H6 PE=4 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 9.027e-20
Identity = 48/102 (47.06%), Postives = 67/102 (65.69%), Query Frame = 1 
Query: 2446 QNEKRNVCKYFSMGSCRHGDRCTYLHESPNKPAPQEPKKKELCRFYEHQQCYKRSNCSYMHEEFPCKLFHAGSKMCPSGDSCKYSHAPLNQETRALLEKYLD 2751
            +++ + +CKYF  G C  GD+C + H++      +  KKKE+C+FY    C K  NC YMH EFPCK +H G+K C  GD CK+SHAPL +ET+ LL+K L+
Sbjct:  308 EHKGKQICKYFLEGRCIKGDQCKFDHDA------ELEKKKEICKFYIQGYCTKGENCIYMHNEFPCKFYHTGAK-CYQGDKCKFSHAPLTKETKELLDKVLN 402
[Close]
BLAST of Zinc finger CCCH domain-containing protein 4 vs. Ensembl Cavefish
Match: zc3h6 (zinc finger CCCH-type containing 6 [Source:ZFIN;Acc:ZDB-GENE-120727-18])

HSP 1 Score: 98.2117 bits (243), Expect = 4.195e-20
Identity = 51/107 (47.66%), Postives = 64/107 (59.81%), Query Frame = 1 
Query: 2458 RNVCKYFSMGSCRHGDRCTYLHESPNKPAPQEPKKKELCRFYEHQQCYKRSNCSYM-HEEFPCKLFHAGSKMCPSGDSCKYSHAPLNQETRALLEKYLDEKVDERTD 2775
            RN+CKYF  G C  GD+C + H++   P     KKKELC+FY    C K  NC YM   E+PCK FH G+K C  GD+CK+SH PL + T+ LL K L+   D   D
Sbjct:  289 RNICKYFIEGRCIKGDQCKFEHDN-VVPG----KKKELCKFYVQGYCTKGENCIYMIANEYPCKFFHTGAK-CYQGDNCKFSHDPLTEITKELLAKILNTDEDHAHD 389
[Close]
BLAST of Zinc finger CCCH domain-containing protein 4 vs. Ensembl Cavefish
Match: zc3h4 (zinc finger CCCH-type containing 4 [Source:NCBI gene;Acc:103043707])

HSP 1 Score: 93.9745 bits (232), Expect = 1.039e-18
Identity = 43/102 (42.16%), Postives = 60/102 (58.82%), Query Frame = 1 
Query: 2458 RNVCKYFSMGSCRHGDRCTYLHESPNKPAPQEPKKKELCRFYEHQQCYKRSNCSYMHEEFPCKLFHAGSKMCPSGDSCKYSHAPLNQETRALLEKYLDEKVD 2763
            + +CKY+  G C  G+ C + H+       + PKKKELC+FY    C +  NC YMH +FPCKLFH  +  C +GD C +SH  L  +T+ LL+K L E  +
Sbjct:  361 KAICKYYIEGRCTWGEHCNFSHDI------ELPKKKELCKFYITGYCARADNCPYMHGDFPCKLFHT-TGNCVNGDDCMFSHDSLTDDTQELLDKMLAEDAE 455
[Close]
BLAST of Zinc finger CCCH domain-containing protein 4 vs. Ensembl Cavefish
Match: mkrn4 (probable E3 ubiquitin-protein ligase makorin-1 [Source:NCBI gene;Acc:103044055])

HSP 1 Score: 56.225 bits (134), Expect = 1.732e-7
Identity = 25/58 (43.10%), Postives = 35/58 (60.34%), Query Frame = 1 
Query: 2455 KRNVCKYFSMGSCRHGDRCTYLHESPNKPAPQEPKKKELCRFYEHQQCYKRSNCSYMH 2628
            +RNVC+ F  GSCR+G  C YLHE P  P+ Q      +CR+++   C+   NC Y+H
Sbjct:   12 ERNVCRQFMNGSCRYGQHCYYLHEWPAVPSAQ------VCRYFQKGGCWFGDNCRYLH 63
[Close]
BLAST of Zinc finger CCCH domain-containing protein 4 vs. Ensembl Cavefish
Match: mkrn4 (probable E3 ubiquitin-protein ligase makorin-1 [Source:NCBI gene;Acc:103044055])

HSP 1 Score: 51.6026 bits (122), Expect = 4.453e-6
Identity = 23/60 (38.33%), Postives = 33/60 (55.00%), Query Frame = 1 
Query: 2449 NEKRNVCKYFSMGSCRHGDRCTYLHESPNKPAPQEPKKKELCRFYEHQQCYKRSNCSYMH 2628
            N    +C+ F  GSCR+G  C YLHE P  P+ Q      +CR+++   C+   NC Y+H
Sbjct:   17 NADGQICRQFMNGSCRYGQHCYYLHEWPAVPSAQ------VCRYFQKGGCWFGDNCRYLH 70
[Close]
BLAST of Zinc finger CCCH domain-containing protein 4 vs. Ensembl Medaka
Match: zc3h4 (zinc finger CCCH-type containing 4 [Source:NCBI gene;Acc:101162773])

HSP 1 Score: 98.9821 bits (245), Expect = 2.940e-20
Identity = 49/112 (43.75%), Postives = 65/112 (58.04%), Query Frame = 1 
Query: 2446 QNEK------RNVCKYFSMGSCRHGDRCTYLHESPNKPAPQEPKKKELCRFYEHQQCYKRSNCSYMHEEFPCKLFHAGSKMCPSGDSCKYSHAPLNQETRALLEKYLDEKVD 2763
            QNEK      + +CKY+  G C  GD C + H+       + PKKKELC+FY    C +  +C YMH EFPCKLFH  +  C +GD C +SH  LN +T+ LL+K L E  +
Sbjct:  356 QNEKHQDKKGKAICKYYIEGRCTWGDHCNFSHDV------ELPKKKELCKFYITGFCARADHCPYMHREFPCKLFHT-TGNCVNGDECMFSHEALNDDTQELLDKMLAEDAE 460
[Close]
BLAST of Zinc finger CCCH domain-containing protein 4 vs. Ensembl Medaka
Match: zc3h6 (zinc finger CCCH-type containing 6 [Source:NCBI gene;Acc:101161746])

HSP 1 Score: 96.2857 bits (238), Expect = 1.846e-19
Identity = 46/99 (46.46%), Postives = 60/99 (60.61%), Query Frame = 1 
Query: 2458 RNVCKYFSMGSCRHGDRCTYLHE--SPNKPAPQEPKKKELCRFYEHQQCYKRSNCSYMHEEFPCKLFHAGSKMCPSGDSCKYSHAPLNQETRALLEKYL 2748
            R +CKYF  G C  G++C + HE   P+K       KKELC+FY    C K  +C YMH E+PCK FH G+K C  GD+CK+SH  L   T+ LL+K +
Sbjct:  287 RYICKYFLEGRCIKGEQCKFEHELVVPDK-------KKELCKFYLQGYCSKGDHCIYMHNEYPCKFFHTGAK-CYQGDNCKFSHDALTDVTKELLDKII 377
[Close]
BLAST of Zinc finger CCCH domain-containing protein 4 vs. Ensembl Medaka
Match: zc3h6 (zinc finger CCCH-type containing 6 [Source:NCBI gene;Acc:101161746])

HSP 1 Score: 96.2857 bits (238), Expect = 1.906e-19
Identity = 46/99 (46.46%), Postives = 60/99 (60.61%), Query Frame = 1 
Query: 2458 RNVCKYFSMGSCRHGDRCTYLHE--SPNKPAPQEPKKKELCRFYEHQQCYKRSNCSYMHEEFPCKLFHAGSKMCPSGDSCKYSHAPLNQETRALLEKYL 2748
            R +CKYF  G C  G++C + HE   P+K       KKELC+FY    C K  +C YMH E+PCK FH G+K C  GD+CK+SH  L   T+ LL+K +
Sbjct:  317 RYICKYFLEGRCIKGEQCKFEHELVVPDK-------KKELCKFYLQGYCSKGDHCIYMHNEYPCKFFHTGAK-CYQGDNCKFSHDALTDVTKELLDKII 407
[Close]
BLAST of Zinc finger CCCH domain-containing protein 4 vs. Ensembl Medaka
Match: ENSORLT00000039008.1 (zinc finger CCCH domain-containing protein 6 [Source:NCBI gene;Acc:101155004])

HSP 1 Score: 77.0258 bits (188), Expect = 1.268e-13
Identity = 42/117 (35.90%), Postives = 61/117 (52.14%), Query Frame = 1 
Query: 2458 RNVCKYFSMGSCRHGDRCTYLH-ESPNKPAPQEPKKKELCRFYEHQQCYKRSNCSYMHEEFPCKLFHAGSKMCPSGDSCKYSHAPLNQETRALLEKYLDEKVDERTDKNGSEWSSSN 2805
            R +C++F  G C   D C   H +S N         K +C+FY    C K  +C YMH+ FPCK FH   K C   DSC++SH PL + T+ LL++ +   ++   ++  SE  SS 
Sbjct:  173 RLLCRHFLRGQCVKADTCQLEHVQSCNDLI------KAVCKFYVVGCCIKGESCPYMHKSFPCKYFHQRGK-CLQQDSCRFSHEPLTELTKKLLDEAIKRDMEIWEERKKSEQGSSG 282
[Close]
BLAST of Zinc finger CCCH domain-containing protein 4 vs. Ensembl Medaka
Match: ENSORLT00000028182.1 (zinc finger CCCH domain-containing protein 6 [Source:NCBI gene;Acc:101155004])

HSP 1 Score: 76.6406 bits (187), Expect = 1.605e-13
Identity = 42/117 (35.90%), Postives = 61/117 (52.14%), Query Frame = 1 
Query: 2458 RNVCKYFSMGSCRHGDRCTYLH-ESPNKPAPQEPKKKELCRFYEHQQCYKRSNCSYMHEEFPCKLFHAGSKMCPSGDSCKYSHAPLNQETRALLEKYLDEKVDERTDKNGSEWSSSN 2805
            R +C++F  G C   D C   H +S N         K +C+FY    C K  +C YMH+ FPCK FH   K C   DSC++SH PL + T+ LL++ +   ++   ++  SE  SS 
Sbjct:  173 RLLCRHFLRGQCVKADTCQLEHVQSCNDLI------KAVCKFYVVGCCIKGESCPYMHKSFPCKYFHQRGK-CLQQDSCRFSHEPLTELTKKLLDEAIKRDMEIWEERKKSEQGSSG 282
[Close]
BLAST of Zinc finger CCCH domain-containing protein 4 vs. Planmine SMEST
Match: SMESG000038705.1 (SMESG000038705.1)

HSP 1 Score: 2193.7 bits (5683), Expect = 0.000e+0
Identity = 1259/1274 (98.82%), Postives = 1260/1274 (98.90%), Query Frame = 1 
Query:  286 MLEPKEDIDFLSQKXXXXXXXXXXXXXXPEIINTIDKESELINTDIHDDSDVSVNDXXXXXXXXXXXXXXXXXXXXLNSDEKDDNKWKKYKSNDECEDDDWSSGKTDLXXXXXXXXXXXXXXXPFSEKIKDNSDNTAKLTWGYDSDEEQTSSKNFNKSESKLSSFNELNKQKDKIVSPSYEPTFVENENTEPKEVEVSKWNYDSDDEXXXXXXXXXXXXXXXXXEPCSNNFRNSKRLDTNSKSDNSGWNNKSDFNNKNWQSNKSPTTTNDINIPGSPMTSNFINSPTCDKSGWGNSLQNNNDVSKTSESISASPKSNKEKWGYESPDENQEETKNWTSSNSPKKSDNWGSCNSPKNNSDSQKWGSSNDNNNKKWGSGGSPDRNDDGNQKWGSRDNNNQKWGSRDDDNNKKWGSRDNDDNNNQRWGSRDGSRRNNFRRFGPXXXXXXXXXXXXXXXXXXSQRNNGNQRWGSNNGSPQRNDDNQRWGSSNNGSPKRNNDENKRWGSSNNSPSRNNDKKWGTSNNNSPERDNDKKWGSGNNSPERNENKLGANSENSKLEGAANNNSYDIPQKSSWGAYDSDDDTAAPPKSSINENKIDNENKWGSNVSPSKPSQNDNWDVQSSPKGNAAEAVSGASKWGDFDSDEESNKPAKENTNNNKTWKSYNSDEEKDTLXXXXXXXXXXXXXXXXXXXXXXDFXXXXXXXXXXXXXXXXXXXXXXXXXQNEKRNVCKYFSMGSCRHGDRCTYLHESPNKPAPQEPKKKELCRFYEHQQCYKRSNCSYMHEEFPCKLFHAGSKMCPSGDSCKYSHAPLNQETRALLEKYLDEKVDERTDKNGSEWSSSNLLLGFVDLTSTLVIKKPVDDDVDEDNAPSLFEQPENFFPDTIRYRYPGSQDMMRFPRPWNTMLRYGEIPLQVPPQMDFIHRQRFLYDRFQYPVPTGRMFPRNFRGIVPPNIHEGFPNGVPFSMPPVVRPGNPKLLPGNPSDLKENFNISDPYIDNLAQLVVGKDPATSPKRLVDMLDPNMQCEDIDDFSLEIETNSSKKNLASPVVIKSPEVPPGAYVPRNSMNAAQPNVRLGPGSGFGGEQAMLYGGYPSHPSESAMMDYINMSAIHYFHNHTETMGYDLPWKLVLLEVPIKIPYPLMVIETHDLPHKYTDPRLKGHPSVLNSSSTNEESVLHQNSYELNSISNYGSQLQSPNFIXXXXXXXXXXXPLNDFLPKSDEPESPMFPIGEDIFSFKSRIETDDYAKKIGTDRSYLQDPRFKRKKVVNPAVEPSEMD 4107
            MLEPKEDIDFLSQKELEDGELEDGELDEPEIINTIDKESELINTDIHDDSDVSVNDKSLKIKKHKHHKKGMHRKRHLNSDEKDDNKWKKYKSNDECEDDDWSSGKTDLKDIIVIDSSDDKIDIPFSEKIKDNSDNTAKLTWGYDSDEEQTSSKNFNKSESKLSSFNELNKQKDKIVSPSYEPTFVENENTEPKEVEVSKWNYDSDDEKDTSNNDFKNNKSNSYDEPCSNNFRNSKRLDTNSKSDNSGWNNKSDFNNKNWQSNKSPTTTNDINIPGSPMTSNFINSPTCDKSGWGNSLQNNNDVSKTSESISASPKSNKEKWGYESPDENQEETKNWTSSNSPKKSDNWGSCNSPKNNSDSQKWGSSNDNNNKKWGSGGSPDRNDDGNQKWGSRDNNNQKWGSRDDDNNKKWGSRDNDDNNNQRWGSRDGSRRNNFRRFGPRDGSRRNNNFRRFGSRDGSQRNNGNQRWGSNNGSPQRNDDNQRWGSSNNGSPKRNNDENKRWGSSNNSPSRNNDKKWGTSNNNSPERDNDKKWGSGNNSPERNENKLGANSENSKLEGAANNNSYDIPQKSSWGAYDSDDDTAAPPKSSINENKIDNENKWGSNVSPSKPSQNDNWDVQSSPKGNAAEAVSGASKWGDFDSDEESNKPAKENTNNNKTWKSYNSDEEKDTLNDENKNGNRNRGGYNNSNWNRNDFKNDRGNDWNDRNNDRNNDRNKRWNNQNEKRNVCKYFSMGSCRHGDRCTYLHESPNKPAPQEPKKKELCRFYEHQQCYKRSNCSYMHEEFPCKLFHAGSKMCPSGDSCKYSHAPLNQETRALLEKYLDEKVDERTDKNGSEWSS              +IKKPVDDDVDEDNAPSLFEQPENFFPDTIRYRYPGSQDMMRFPRPWNTMLRYGEIPLQVPPQMDFIHRQRFLYDRFQYPVPTGRMFPRNFRGIVPPNIHEGFPNGVPFSMPPVVRPGNPKLLPGNPSDLKENFNISDPYIDNLAQLVVGKDPATSPKRLVDMLDPNMQCEDIDDFSLEIETNSSKKNLASPVVIKSPEVPPGAYVPRNSMNAAQPNVRLGPGSGFGGEQAMLYGGYPSHPSESAMMDYINMSAIHYFHNHTETMGYDLPWKLVLLEVPIKIPYPLMVIETHDLPHKYTDPRLKGHPSVLNSSSTNEESVLHQNSYELNSISNYGSQLQSPNFITTTSESSETLTPLNDFLPKSDEPESPMFPIGEDIFSFKSRIETDDYAKKIGTDRSYLQDPRFKRKKVVNPAVEPSEMD
Sbjct:    1 MLEPKEDIDFLSQKELEDGELEDGELDEPEIINTIDKESELINTDIHDDSDVSVNDKSLKIKKHKHHKKGMHRKRHLNSDEKDDNKWKKYKSNDECEDDDWSSGKTDLKDIIVIDSSDDKIDIPFSEKIKDNSDNTAKLTWGYDSDEEQTSSKNFNKSESKLSSFNELNKQKDKIVSPSYEPTFVENENTEPKEVEVSKWNYDSDDEKDTSNNDFKNNKSNSYDEPCSNNFRNSKRLDTNSKSDNSGWNNKSDFNNKNWQSNKSPTTTNDINIPGSPMTSNFINSPTCDKSGWGNSLQNNNDVSKTSESISASPKSNKEKWGYESPDENQEETKNWTSSNSPKKSDNWGSCNSPKNNSDSQKWGSSNDNNNKKWGSGGSPDRNDDGNQKWGSRDNNNQKWGSRDDDNNKKWGSRDNDDNNNQRWGSRDGSRRNNFRRFGPRDGSRRNNNFRRFGSRDGSQRNNGNQRWGSNNGSPQRNDDNQRWGSSNNGSPKRNNDENKRWGSSNNSPSRNNDKKWGTSNNNSPERDNDKKWGSGNNSPERNENKLGANSENSKLEGAANNNSYDIPQKSSWGAYDSDDDTAAPPKSSINENKIDNENKWGSNVSPSKPSQNDNWDVQSSPKGNAAEAVSGASKWGDFDSDEESNKPAKENTNNNKTWKSYNSDEEKDTLNDENKNGNRNRGGYNNSNWNRNDFKNDRGNDWNDRNNDRNNDRNKRWNNQNEKRNVCKYFSMGSCRHGDRCTYLHESPNKPAPQEPKKKELCRFYEHQQCYKRSNCSYMHEEFPCKLFHAGSKMCPSGDSCKYSHAPLNQETRALLEKYLDEKVDERTDKNGSEWSS--------------IIKKPVDDDVDEDNAPSLFEQPENFFPDTIRYRYPGSQDMMRFPRPWNTMLRYGEIPLQVPPQMDFIHRQRFLYDRFQYPVPTGRMFPRNFRGIVPPNIHEGFPNGVPFSMPPVVRPGNPKLLPGNPSDLKENFNISDPYIDNLAQLVVGKDPATSPKRLVDMLDPNMQCEDIDDFSLEIETNSSKKNLASPVVIKSPEVPPGAYVPRNSMNAAQPNVRLGPGSGFGGEQAMLYGGYPSHPSESAMMDYINMSAIHYFHNHTETMGYDLPWKLVLLEVPIKIPYPLMVIETHDLPHKYTDPRLKGHPSVLNSSSTNEESVLHQNSYELNSISNYGSQLQSPNFITTTSESSETLTPLNDFLPKSDEPESPMFPIGEDIFSFKSRIETDDYAKKIGTDRSYLQDPRFKRKKVVNPAVEPSEMD 1260
[Close]
BLAST of Zinc finger CCCH domain-containing protein 4 vs. Planmine SMEST
Match: SMESG000038705.1 (SMESG000038705.1)

HSP 1 Score: 2155.56 bits (5584), Expect = 0.000e+0
Identity = 1244/1274 (97.65%), Postives = 1246/1274 (97.80%), Query Frame = 1 
Query:  286 MLEPKEDIDFLSQKXXXXXXXXXXXXXXPEIINTIDKESELINTDIHDDSDVSVNDXXXXXXXXXXXXXXXXXXXXLNSDEKDDNKWKKYKSNDECEDDDWSSGKTDLXXXXXXXXXXXXXXXPFSEKIKDNSDNTAKLTWGYDSDEEQTSSKNFNKSESKLSSFNELNKQKDKIVSPSYEPTFVENENTEPKEVEVSKWNYDSDDEXXXXXXXXXXXXXXXXXEPCSNNFRNSKRLDTNSKSDNSGWNNKSDFNNKNWQSNKSPTTTNDINIPGSPMTSNFINSPTCDKSGWGNSLQNNNDVSKTSESISASPKSNKEKWGYESPDENQEETKNWTSSNSPKKSDNWGSCNSPKNNSDSQKWGSSNDNNNKKWGSGGSPDRNDDGNQKWGSRDNNNQKWGSRDDDNNKKWGSRDNDDNNNQRWGSRDGSRRNNFRRFGPXXXXXXXXXXXXXXXXXXSQRNNGNQRWGSNNGSPQRNDDNQRWGSSNNGSPKRNNDENKRWGSSNNSPSRNNDKKWGTSNNNSPERDNDKKWGSGNNSPERNENKLGANSENSKLEGAANNNSYDIPQKSSWGAYDSDDDTAAPPKSSINENKIDNENKWGSNVSPSKPSQNDNWDVQSSPKGNAAEAVSGASKWGDFDSDEESNKPAKENTNNNKTWKSYNSDEEKDTLXXXXXXXXXXXXXXXXXXXXXXDFXXXXXXXXXXXXXXXXXXXXXXXXXQNEKRNVCKYFSMGSCRHGDRCTYLHESPNKPAPQEPKKKELCRFYEHQQCYKRSNCSYMHEEFPCKLFHAGSKMCPSGDSCKYSHAPLNQETRALLEKYLDEKVDERTDKNGSEWSSSNLLLGFVDLTSTLVIKKPVDDDVDEDNAPSLFEQPENFFPDTIRYRYPGSQDMMRFPRPWNTMLRYGEIPLQVPPQMDFIHRQRFLYDRFQYPVPTGRMFPRNFRGIVPPNIHEGFPNGVPFSMPPVVRPGNPKLLPGNPSDLKENFNISDPYIDNLAQLVVGKDPATSPKRLVDMLDPNMQCEDIDDFSLEIETNSSKKNLASPVVIKSPEVPPGAYVPRNSMNAAQPNVRLGPGSGFGGEQAMLYGGYPSHPSESAMMDYINMSAIHYFHNHTETMGYDLPWKLVLLEVPIKIPYPLMVIETHDLPHKYTDPRLKGHPSVLNSSSTNEESVLHQNSYELNSISNYGSQLQSPNFIXXXXXXXXXXXPLNDFLPKSDEPESPMFPIGEDIFSFKSRIETDDYAKKIGTDRSYLQDPRFKRKKVVNPAVEPSEMD 4107
            MLEPKEDIDFLSQKELEDGELEDGELDEPEIINTIDKESELINTDIHDDSDVSVNDKSLKIKKHKHHKKGMHRKRHLNSDEKDDNKWKKYKSNDECEDDDWSSGKTDLKDIIVIDSSDDKIDIPFSEKIKDNSDNTAKLTWGYDSDEEQTSSKNFNKSESKLSSFNELNKQKDKIVSPSYEPTFVENENTEPKEVEVSKWNYDSDDEKDTSNNDFKNNKSNSYDEPCSNNFRNSKRLDTNSKSDNSGWNNKSDFNNKNWQSNKSPTTTNDINIPGSPMTSNFINSPTCDKSGWGNSLQNNNDVSKTSESISASPKSNKEKWGYESPDENQEETKNWTSSNSPKKSDNWGSCNSPKNNSDSQKWGSSNDNNNKKWGSGGSPDRNDDGNQKWGSRDNNNQKWGSRDDDNNKKWGSRDNDDNNNQRWGSRDGSRRNNFRRFGPRDGSRRNNNFRRFGSRDGSQRNNGNQRWGSNNGSPQRNDDNQRWGSSNNGSPKRNNDENKRWGSSNNSPSRNNDKKWGTSNNNSPERDNDKKWGSGNNSPERNENKLGANSENSKLEGAANNNSYDIPQKSSWGAYDSDDDTAAPPKSSINENKIDNENKWGSNVSPSKPSQNDNWDVQSSPKGNAAEAVSGASKWGDFDSDEESNKPAKENTNNNKTWKSYNSDEEKDTLNDENKNGNRNRGGYNNSNWNRNDFKNDRGNDWNDRNNDRNNDRNKRWNNQNEKRNVCKYFSMGSCRHGDRCTYLHESPNKPAPQEPKKKELCRFYEHQQCYKRSNCSYMHEEFPCKLFHAGSKMCPSGDSCKYSHAPLNQETRALLEKYLDEKVDERTDKNGSEWSS              +IKKPVDDDVDEDNAPSLFEQPENFFPDTIRYRYPGSQDMMRFPRPWNTMLRYGEIPLQVPPQMDFIHRQRFLYDRFQYPVPTGRMFPRNFRGIVPPNIHEGFPNGVPFSMPPVVRPGNPKLLPGNPSDLKENFNISDPYIDNLAQLVVGKDPATSPKRLVDMLDPNMQCEDIDDFSLEIETNS              +VPPGAYVPRNSMNAAQPNVRLGPGSGFGGEQAMLYGGYPSHPSESAMMDYINMSAIHYFHNHTETMGYDLPWKLVLLEVPIKIPYPLMVIETHDLPHKYTDPRLKGHPSVLNSSSTNEESVLHQNSYELNSISNYGSQLQSPNFITTTSESSETLTPLNDFLPKSDEPESPMFPIGEDIFSFKSRIETDDYAKKIGTDRSYLQDPRFKRKKVVNPAVEPSEMD
Sbjct:    1 MLEPKEDIDFLSQKELEDGELEDGELDEPEIINTIDKESELINTDIHDDSDVSVNDKSLKIKKHKHHKKGMHRKRHLNSDEKDDNKWKKYKSNDECEDDDWSSGKTDLKDIIVIDSSDDKIDIPFSEKIKDNSDNTAKLTWGYDSDEEQTSSKNFNKSESKLSSFNELNKQKDKIVSPSYEPTFVENENTEPKEVEVSKWNYDSDDEKDTSNNDFKNNKSNSYDEPCSNNFRNSKRLDTNSKSDNSGWNNKSDFNNKNWQSNKSPTTTNDINIPGSPMTSNFINSPTCDKSGWGNSLQNNNDVSKTSESISASPKSNKEKWGYESPDENQEETKNWTSSNSPKKSDNWGSCNSPKNNSDSQKWGSSNDNNNKKWGSGGSPDRNDDGNQKWGSRDNNNQKWGSRDDDNNKKWGSRDNDDNNNQRWGSRDGSRRNNFRRFGPRDGSRRNNNFRRFGSRDGSQRNNGNQRWGSNNGSPQRNDDNQRWGSSNNGSPKRNNDENKRWGSSNNSPSRNNDKKWGTSNNNSPERDNDKKWGSGNNSPERNENKLGANSENSKLEGAANNNSYDIPQKSSWGAYDSDDDTAAPPKSSINENKIDNENKWGSNVSPSKPSQNDNWDVQSSPKGNAAEAVSGASKWGDFDSDEESNKPAKENTNNNKTWKSYNSDEEKDTLNDENKNGNRNRGGYNNSNWNRNDFKNDRGNDWNDRNNDRNNDRNKRWNNQNEKRNVCKYFSMGSCRHGDRCTYLHESPNKPAPQEPKKKELCRFYEHQQCYKRSNCSYMHEEFPCKLFHAGSKMCPSGDSCKYSHAPLNQETRALLEKYLDEKVDERTDKNGSEWSS--------------IIKKPVDDDVDEDNAPSLFEQPENFFPDTIRYRYPGSQDMMRFPRPWNTMLRYGEIPLQVPPQMDFIHRQRFLYDRFQYPVPTGRMFPRNFRGIVPPNIHEGFPNGVPFSMPPVVRPGNPKLLPGNPSDLKENFNISDPYIDNLAQLVVGKDPATSPKRLVDMLDPNMQCEDIDDFSLEIETNS--------------KVPPGAYVPRNSMNAAQPNVRLGPGSGFGGEQAMLYGGYPSHPSESAMMDYINMSAIHYFHNHTETMGYDLPWKLVLLEVPIKIPYPLMVIETHDLPHKYTDPRLKGHPSVLNSSSTNEESVLHQNSYELNSISNYGSQLQSPNFITTTSESSETLTPLNDFLPKSDEPESPMFPIGEDIFSFKSRIETDDYAKKIGTDRSYLQDPRFKRKKVVNPAVEPSEMD 1246
[Close]
BLAST of Zinc finger CCCH domain-containing protein 4 vs. Planmine SMEST
Match: SMESG000049281.1 (SMESG000049281.1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.914e-16
Identity = 40/98 (40.82%), Postives = 57/98 (58.16%), Query Frame = 1 
Query: 2464 VCKYFSMGSCRHGDRCTYLHESPNKPAPQEPKK-KELCRFYEHQQCYKRSNCSYMHEEFPCKLFH--AGSKMCPSGDSCKYSHAPLNQETRALLEKYL 2748
            +CKYF+ GSC+  D C Y H+      P + KK  E+C++Y   +C K   C YMH+ FPC  FH   G+K C  G+ C +SH PL++    +LE +L
Sbjct:   12 ICKYFTYGSCKMDD-CIYSHD----VTPDQMKKFDEMCKYYAVGECAKGEMCCYMHKTFPCIFFHNKLGNK-CNKGEKCLFSHEPLSEAKSVILENHL 103
[Close]
BLAST of Zinc finger CCCH domain-containing protein 4 vs. Planmine SMEST
Match: SMESG000049281.1 (SMESG000049281.1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.525e-16
Identity = 40/98 (40.82%), Postives = 57/98 (58.16%), Query Frame = 1 
Query: 2464 VCKYFSMGSCRHGDRCTYLHESPNKPAPQEPKK-KELCRFYEHQQCYKRSNCSYMHEEFPCKLFH--AGSKMCPSGDSCKYSHAPLNQETRALLEKYL 2748
            +CKYF+ GSC+  D C Y H+      P + KK  E+C++Y   +C K   C YMH+ FPC  FH   G+K C  G+ C +SH PL++    +LE +L
Sbjct:   43 ICKYFTYGSCKMDD-CIYSHD----VTPDQMKKFDEMCKYYAVGECAKGEMCCYMHKTFPCIFFHNKLGNK-CNKGEKCLFSHEPLSEAKSVILENHL 134
[Close]
BLAST of Zinc finger CCCH domain-containing protein 4 vs. Planmine SMEST
Match: SMESG000033996.1 (SMESG000033996.1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.525e-16
Identity = 40/98 (40.82%), Postives = 57/98 (58.16%), Query Frame = 1 
Query: 2464 VCKYFSMGSCRHGDRCTYLHESPNKPAPQEPKK-KELCRFYEHQQCYKRSNCSYMHEEFPCKLFH--AGSKMCPSGDSCKYSHAPLNQETRALLEKYL 2748
            +CKYF+ GSC+  D C Y H+      P + KK  E+C++Y   +C K   C YMH+ FPC  FH   G+K C  G+ C +SH PL++    +LE +L
Sbjct:   43 ICKYFTYGSCKMDD-CIYSHD----VTPDQMKKFDEMCKYYAVGECAKGEMCCYMHKTFPCIFFHNKLGNK-CNKGEKCLFSHEPLSEAKSVILENHL 134
The following BLAST results are available for this feature:
BLAST of Zinc finger CCCH domain-containing protein 4 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ZC3H63.969e-2144.12zinc finger CCCH-type containing 6 [Source:HGNC Sy... [more]
ZC3H63.969e-2144.12zinc finger CCCH-type containing 6 [Source:HGNC Sy... [more]
ZC3H49.880e-2142.74zinc finger CCCH-type containing 4 [Source:HGNC Sy... [more]
ZC3H81.220e-2044.90zinc finger CCCH-type containing 8 [Source:HGNC Sy... [more]
ZC3H81.475e-2044.90zinc finger CCCH-type containing 8 [Source:HGNC Sy... [more]
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BLAST of Zinc finger CCCH domain-containing protein 4 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 1
Match NameE-valueIdentityDescription
T26A8.41.556e-1540.82pep chromosome:WBcel235:IV:8428961:8431493:-1 gene... [more]
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BLAST of Zinc finger CCCH domain-containing protein 4 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 3
Match NameE-valueIdentityDescription
su(sable)2.010e-1247.06gene:FBgn0003575 transcript:FBtr0340081[more]
su(sable)2.046e-1247.06gene:FBgn0003575 transcript:FBtr0070120[more]
su(sable)2.046e-1247.06gene:FBgn0003575 transcript:FBtr0340082[more]
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BLAST of Zinc finger CCCH domain-containing protein 4 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 3
Match NameE-valueIdentityDescription
zc3h67.009e-2046.67zinc finger CCCH-type containing 6 [Source:ZFIN;Ac... [more]
zc3h44.006e-1940.57zinc finger CCCH-type containing 4 [Source:ZFIN;Ac... [more]
mkrn42.673e-740.00makorin, ring finger protein, 4 [Source:ZFIN;Acc:Z... [more]
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BLAST of Zinc finger CCCH domain-containing protein 4 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 3
Match NameE-valueIdentityDescription
zc3h64.113e-2242.11zinc finger CCCH type containing 6 [Source:NCBI ge... [more]
iqcb11.083e-1740.00IQ motif containing B1 [Source:Xenbase;Acc:XB-GENE... [more]
zc3h62.439e-1637.72zinc finger CCCH type containing 6 [Source:NCBI ge... [more]
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BLAST of Zinc finger CCCH domain-containing protein 4 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 4
Match NameE-valueIdentityDescription
Zc3h61.601e-2145.10zinc finger CCCH type containing 6 [Source:MGI Sym... [more]
Zc3h83.171e-2145.92zinc finger CCCH type containing 8 [Source:MGI Sym... [more]
Zc3h42.146e-2042.74zinc finger CCCH-type containing 4 [Source:MGI Sym... [more]
Zc3h42.815e-2043.97zinc finger CCCH-type containing 4 [Source:MGI Sym... [more]
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BLAST of Zinc finger CCCH domain-containing protein 4 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q8BYK8|ZC3H6_MOUSE1.139e-2045.10Zinc finger CCCH domain-containing protein 6 OS=Mu... [more]
sp|P61129|ZC3H6_HUMAN1.906e-2044.12Zinc finger CCCH domain-containing protein 6 OS=Ho... [more]
sp|Q9JJ48|ZC3H8_MOUSE2.218e-2045.92Zinc finger CCCH domain-containing protein 8 OS=Mu... [more]
sp|Q8N5P1|ZC3H8_HUMAN7.084e-2044.90Zinc finger CCCH domain-containing protein 8 OS=Ho... [more]
sp|Q9UPT8|ZC3H4_HUMAN1.694e-1942.74Zinc finger CCCH domain-containing protein 4 OS=Ho... [more]
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BLAST of Zinc finger CCCH domain-containing protein 4 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
G3WVY85.015e-2047.06Zinc finger CCCH-type containing 6 OS=Sarcophilus ... [more]
A0A4X2L7P25.222e-2047.06Zinc finger CCCH-type containing 6 OS=Vombatus urs... [more]
A0A3Q0GPZ17.919e-2044.26LOW QUALITY PROTEIN: zinc finger CCCH domain-conta... [more]
F7DDT28.317e-2047.06Zinc finger CCCH-type containing 6 OS=Ornithorhync... [more]
F7DDS59.027e-2047.06Zinc finger CCCH-type containing 6 OS=Ornithorhync... [more]
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BLAST of Zinc finger CCCH domain-containing protein 4 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 4
Match NameE-valueIdentityDescription
zc3h64.195e-2047.66zinc finger CCCH-type containing 6 [Source:ZFIN;Ac... [more]
zc3h41.039e-1842.16zinc finger CCCH-type containing 4 [Source:NCBI ge... [more]
mkrn41.732e-743.10probable E3 ubiquitin-protein ligase makorin-1 [So... [more]
mkrn44.453e-638.33probable E3 ubiquitin-protein ligase makorin-1 [So... [more]
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BLAST of Zinc finger CCCH domain-containing protein 4 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Zinc finger CCCH domain-containing protein 4 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Zinc finger CCCH domain-containing protein 4 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Zinc finger CCCH domain-containing protein 4 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
zc3h42.940e-2043.75zinc finger CCCH-type containing 4 [Source:NCBI ge... [more]
zc3h61.846e-1946.46zinc finger CCCH-type containing 6 [Source:NCBI ge... [more]
zc3h61.906e-1946.46zinc finger CCCH-type containing 6 [Source:NCBI ge... [more]
ENSORLT00000039008.11.268e-1335.90zinc finger CCCH domain-containing protein 6 [Sour... [more]
ENSORLT00000028182.11.605e-1335.90zinc finger CCCH domain-containing protein 6 [Sour... [more]
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BLAST of Zinc finger CCCH domain-containing protein 4 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000038705.10.000e+098.82SMESG000038705.1[more]
SMESG000038705.10.000e+097.65SMESG000038705.1[more]
SMESG000049281.14.914e-1640.82SMESG000049281.1[more]
SMESG000049281.15.525e-1640.82SMESG000049281.1[more]
SMESG000033996.15.525e-1640.82SMESG000033996.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30009035 ID=SMED30009035|Name=Zinc finger CCCH domain-containing protein 4|organism=Schmidtea mediterranea sexual|type=transcript|length=4569bp
TAGGAAATACTGACTTGACTATATAGATGCATTCCGCTTATATAGTAGTT
ATGATACTTCCATATTTATTTTTAAAATTATATTTTTTTTAGTAAAATGA
TTTTTAGTAATATATTTCATATTTTTATTAGAAAATAGCTTTCAAATTTC
CAAATATTTTTCAAAGGAAAGTTGAACTACTTTTAATATTTTGCAAATCG
TTTCAAATAATTTTTTTATTAAGCTAAATTAGTTTCGAAATAAATGGACA
TTGTGTTAACTGCAAAGTAAGCATAATTTATCAACATGTTGGAACCAAAA
GAAGATATTGATTTTTTAAGTCAAAAAGAGTTAGAAGATGGTGAGTTAGA
AGATGGAGAGTTAGATGAACCTGAAATTATAAACACAATTGATAAAGAAT
CTGAGCTTATAAATACTGATATTCATGATGATTCTGATGTAAGCGTAAAT
GATAAGAGTCTTAAAATTAAGAAACATAAGCATCATAAAAAAGGAATGCA
TAGGAAACGTCACCTAAATTCTGACGAAAAAGACGATAATAAATGGAAAA
AATATAAAAGTAACGATGAATGTGAAGATGACGATTGGTCATCTGGAAAA
ACAGATTTGAAAGACATTATTGTTATTGATAGTAGTGATGATAAAATAGA
CATTCCCTTTAGTGAAAAAATTAAAGATAATAGCGATAATACAGCTAAAC
TTACATGGGGTTACGATAGTGACGAAGAGCAAACTTCATCTAAAAATTTT
AATAAAAGTGAAAGTAAATTAAGTTCATTTAATGAATTAAATAAGCAAAA
AGATAAAATTGTATCACCTTCTTACGAACCAACTTTTGTAGAAAATGAAA
ATACTGAACCTAAAGAAGTAGAGGTCAGTAAGTGGAATTATGATAGTGAC
GATGAAAAAGATACATCAAATAATGATTTTAAAAATAACAAATCTAATTC
TTATGATGAACCTTGCAGTAATAATTTTAGAAATTCGAAGAGGTTGGATA
CTAATTCTAAAAGTGATAACAGTGGTTGGAATAACAAATCAGATTTTAAT
AATAAAAATTGGCAATCAAATAAAAGTCCTACTACAACAAATGATATAAA
TATACCGGGAAGTCCAATGACTTCAAATTTTATTAATTCACCCACATGCG
ATAAAAGTGGTTGGGGAAATTCTTTACAGAATAATAATGATGTATCCAAA
ACATCAGAATCAATATCTGCATCCCCAAAATCGAATAAAGAAAAATGGGG
TTATGAAAGTCCAGATGAAAATCAAGAAGAAACGAAAAATTGGACATCTA
GTAATAGTCCGAAAAAATCTGACAATTGGGGATCGTGCAACAGTCCTAAA
AACAACAGTGACAGTCAAAAATGGGGTTCTAGCAATGATAATAATAATAA
AAAATGGGGCTCAGGTGGTAGTCCTGATAGAAATGATGATGGTAACCAAA
AGTGGGGTTCCCGTGATAATAATAATCAAAAATGGGGTTCACGTGATGAT
GACAACAATAAAAAATGGGGTTCACGAGATAATGACGATAATAATAATCA
AAGATGGGGTTCGCGCGATGGCTCCCGTAGAAATAATTTTAGACGGTTTG
GTCCTAGAGATGGATCTCGAAGGAATAATAACTTTCGAAGGTTTGGGTCC
CGTGATGGATCACAAAGAAATAATGGTAATCAGAGGTGGGGATCAAACAA
TGGAAGCCCACAAAGAAATGATGACAATCAAAGATGGGGATCATCAAATA
ATGGAAGCCCGAAAAGGAATAATGATGAAAATAAGCGATGGGGATCAAGT
AATAATAGTCCATCGAGAAATAATGATAAAAAATGGGGAACTTCGAACAA
TAACAGTCCCGAGAGAGATAATGATAAAAAGTGGGGTTCGGGAAACAATA
GTCCGGAAAGAAATGAAAATAAGCTGGGTGCAAATAGTGAAAATTCAAAA
TTAGAAGGGGCAGCAAATAATAATTCCTATGATATTCCCCAAAAAAGCTC
ATGGGGTGCTTACGATAGTGATGATGATACAGCTGCACCACCAAAAAGTT
CTATAAATGAAAACAAAATAGATAATGAGAATAAATGGGGTTCAAATGTA
AGTCCTAGTAAACCAAGTCAAAATGATAACTGGGATGTGCAAAGTAGTCC
AAAGGGGAATGCAGCTGAAGCTGTTTCAGGTGCTAGTAAATGGGGAGATT
TTGATAGTGATGAAGAAAGTAATAAACCAGCTAAAGAAAATACTAATAAT
AATAAAACGTGGAAATCTTATAACAGTGATGAAGAGAAAGACACGCTAAA
TGATGAGAATAAAAATGGAAATAGAAATAGGGGTGGATATAATAATTCTA
ATTGGAATAGAAATGATTTTAAAAATGATAGAGGTAACGATTGGAATGAC
AGGAATAATGATAGAAATAATGATCGTAATAAGAGATGGAATAATCAAAA
TGAAAAAAGAAATGTTTGTAAATATTTTAGTATGGGTAGTTGTCGTCATG
GTGATAGGTGTACATATCTACATGAATCTCCCAATAAGCCTGCTCCTCAA
GAACCAAAGAAGAAAGAACTTTGTCGATTCTATGAACACCAACAATGCTA
TAAAAGATCTAATTGTTCTTATATGCACGAGGAATTCCCATGTAAACTGT
TTCATGCTGGTTCAAAAATGTGTCCTTCGGGTGACAGCTGTAAATACTCT
CATGCGCCATTGAATCAAGAAACGAGGGCTTTATTGGAAAAATATCTCGA
TGAGAAGGTTGATGAAAGAACTGATAAAAATGGATCAGAATGGAGTTCAA
GTAATTTATTATTGGGTTTTGTTGATCTAACCTCTACTCTAGTCATAAAA
AAACCCGTTGACGATGATGTAGATGAAGATAATGCACCAAGTTTATTTGA
ACAACCAGAAAACTTTTTCCCAGATACGATCCGATATCGATATCCGGGTA
GCCAGGATATGATGAGATTTCCTAGGCCATGGAATACAATGTTGCGCTAC
GGTGAAATTCCATTGCAAGTACCACCGCAAATGGATTTCATTCACCGACA
AAGATTTCTATATGACAGATTTCAATACCCCGTGCCAACTGGGAGAATGT
TTCCCAGGAATTTCCGAGGAATTGTACCTCCTAATATCCACGAAGGTTTC
CCAAATGGTGTACCATTTTCTATGCCTCCTGTTGTGCGACCTGGAAATCC
AAAATTACTTCCAGGCAATCCTTCCGATTTAAAGGAAAATTTCAACATTT
CCGATCCATATATCGATAATCTGGCACAATTGGTTGTTGGTAAAGATCCA
GCAACATCTCCAAAGCGATTAGTGGATATGCTTGATCCGAATATGCAGTG
TGAAGATATCGATGATTTCTCTTTGGAAATCGAAACTAATAGTAGTAAGA
AAAATTTGGCATCTCCTGTTGTAATCAAATCGCCAGAAGTTCCTCCAGGT
GCCTATGTTCCTAGAAATAGTATGAATGCTGCACAACCAAACGTTAGATT
GGGTCCTGGATCGGGTTTTGGAGGTGAGCAAGCAATGCTTTATGGTGGTT
ATCCGAGTCACCCAAGCGAATCTGCAATGATGGACTATATCAACATGTCA
GCAATCCATTATTTTCATAACCATACGGAAACCATGGGTTACGATTTACC
TTGGAAACTGGTTTTACTTGAAGTACCAATAAAAATTCCATACCCATTGA
TGGTTATTGAAACTCACGACTTGCCGCATAAATACACTGATCCGCGCTTG
AAAGGTCATCCCAGTGTGCTCAATTCGAGTAGCACCAATGAAGAATCGGT
ACTCCATCAAAACTCCTATGAATTAAACAGTATTTCTAACTATGGATCTC
AATTGCAGTCACCAAATTTCATTACAACGACTTCAGAATCTTCAGAAACA
CTGACTCCATTGAATGATTTCTTACCGAAATCTGATGAACCGGAATCCCC
AATGTTTCCAATTGGAGAAGATATCTTTAGTTTTAAAAGTCGAATAGAAA
CAGATGATTACGCGAAAAAAATTGGAACTGACCGATCGTATTTACAAGAC
CCTCGCTTTAAGAGGAAAAAAGTTGTTAATCCCGCTGTCGAACCCTCGGA
AATGGATTAGCATTAAGAAAATATGGACGTGTTACTGATTAAAAATGAAT
CAATTTGTATGTTAGATTTTAGTATGCTTGTAATAGAAATTGTACAAAAT
TAAGAACCATTTTTGCATTTTAAGTAAAAAAAAGTTCACTATCGAATCCT
TGTTTTACATTGTGTAAGGCATGTAGAAAATTAGTGGAAACAGCTTTGTT
TTTTAAAATATTTGTAAAGATTGATTAAGTTACTGTTTATCCTGTCAGTA
GAGTTTATTAAATTTTATGGGCATCTCATTTGTCTTTTTCAAAAAAAAAA
ATTCAAAGCAGTGATTCCCTTTCTTGGCTTTTGTAATAATGTGTAATAAC
AGTTATTGTAATATAGACATGATAAACAGTTCTCTGCTATTTTTACATAA
TTAAAATGTTTCGAAATATCAGTATTTGATAAATTTGTATTTTACATTTG
CTGACAATGTTGATTCACA
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protein sequence of SMED30009035-orf-1

>SMED30009035-orf-1 ID=SMED30009035-orf-1|Name=SMED30009035-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1275bp
MLEPKEDIDFLSQKELEDGELEDGELDEPEIINTIDKESELINTDIHDDS
DVSVNDKSLKIKKHKHHKKGMHRKRHLNSDEKDDNKWKKYKSNDECEDDD
WSSGKTDLKDIIVIDSSDDKIDIPFSEKIKDNSDNTAKLTWGYDSDEEQT
SSKNFNKSESKLSSFNELNKQKDKIVSPSYEPTFVENENTEPKEVEVSKW
NYDSDDEKDTSNNDFKNNKSNSYDEPCSNNFRNSKRLDTNSKSDNSGWNN
KSDFNNKNWQSNKSPTTTNDINIPGSPMTSNFINSPTCDKSGWGNSLQNN
NDVSKTSESISASPKSNKEKWGYESPDENQEETKNWTSSNSPKKSDNWGS
CNSPKNNSDSQKWGSSNDNNNKKWGSGGSPDRNDDGNQKWGSRDNNNQKW
GSRDDDNNKKWGSRDNDDNNNQRWGSRDGSRRNNFRRFGPRDGSRRNNNF
RRFGSRDGSQRNNGNQRWGSNNGSPQRNDDNQRWGSSNNGSPKRNNDENK
RWGSSNNSPSRNNDKKWGTSNNNSPERDNDKKWGSGNNSPERNENKLGAN
SENSKLEGAANNNSYDIPQKSSWGAYDSDDDTAAPPKSSINENKIDNENK
WGSNVSPSKPSQNDNWDVQSSPKGNAAEAVSGASKWGDFDSDEESNKPAK
ENTNNNKTWKSYNSDEEKDTLNDENKNGNRNRGGYNNSNWNRNDFKNDRG
NDWNDRNNDRNNDRNKRWNNQNEKRNVCKYFSMGSCRHGDRCTYLHESPN
KPAPQEPKKKELCRFYEHQQCYKRSNCSYMHEEFPCKLFHAGSKMCPSGD
SCKYSHAPLNQETRALLEKYLDEKVDERTDKNGSEWSSSNLLLGFVDLTS
TLVIKKPVDDDVDEDNAPSLFEQPENFFPDTIRYRYPGSQDMMRFPRPWN
TMLRYGEIPLQVPPQMDFIHRQRFLYDRFQYPVPTGRMFPRNFRGIVPPN
IHEGFPNGVPFSMPPVVRPGNPKLLPGNPSDLKENFNISDPYIDNLAQLV
VGKDPATSPKRLVDMLDPNMQCEDIDDFSLEIETNSSKKNLASPVVIKSP
EVPPGAYVPRNSMNAAQPNVRLGPGSGFGGEQAMLYGGYPSHPSESAMMD
YINMSAIHYFHNHTETMGYDLPWKLVLLEVPIKIPYPLMVIETHDLPHKY
TDPRLKGHPSVLNSSSTNEESVLHQNSYELNSISNYGSQLQSPNFITTTS
ESSETLTPLNDFLPKSDEPESPMFPIGEDIFSFKSRIETDDYAKKIGTDR
SYLQDPRFKRKKVVNPAVEPSEMD*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
PLANA:0000429neoblast
PLANA:0002109X1 cell
PLANA:0002111X2 cell
Vocabulary: INTERPRO
TermDefinition
IPR041367Znf-CCCH_4
IPR036855Znf_CCCH_sf
IPR011528NERD
IPR000571Znf_CCCH
Vocabulary: molecular function
TermDefinition
GO:0046872metal ion binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 784..808
e-value: 3.5
score: 11.9
coord: 758..783
e-value: 0.54
score: 18.4
coord: 722..748
e-value: 1.4E-5
score: 34.5
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 785..809
score: 11.573
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 757..784
score: 12.267
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 722..749
score: 15.967
NoneNo IPR availableGENE3DG3DSA:4.10.1000.10coord: 753..840
e-value: 4.9E-22
score: 79.8
coord: 715..752
e-value: 4.9E-5
score: 25.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 215..318
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..17
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 538..571
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 501..524
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..103
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 677..694
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..103
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 398..452
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 695..720
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 584..627
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 453..493
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 134..720
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 135..173
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 332..397
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..75
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 661..676
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 187..214
NoneNo IPR availablePANTHERPTHR13119FAMILY NOT NAMEDcoord: 630..932
IPR041367E3 ligase, CCCH-type zinc fingerPFAMPF18044zf-CCCH_4coord: 727..747
e-value: 3.2E-6
score: 26.8
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILYSSF90229CCCH zinc fingercoord: 757..782
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILYSSF90229CCCH zinc fingercoord: 722..747
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILYSSF90229CCCH zinc fingercoord: 784..829