SMED30009017

Overview
NameSMED30009017
Smed IDSMED30009017
Length (bp)1720
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30009017 (SMED30009017) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30009017 (SMED30009017) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30009017 (SMED30009017) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30009017 (SMED30009017) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30009017

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 5

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
nervous systemSMED30009017SMESG000020517.1 dd_Smed_v4_14248_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30009017SMESG000020517.1 dd_Smed_v4_14248_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30009017SMESG000020517.1 dd_Smed_v4_14248_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30009017SMESG000020517.1 SMED30009017smed_20140614PMID:26457503
Tu et al., 2015
whole organism asexual adult colorimetric in situ hybridization evidence
parenchymaSMED30009017SMESG000020517.1 SMED30009017smed_20140614PMID:26457503
Tu et al., 2015
whole organism asexual adult colorimetric in situ hybridization evidence
Note: Hover over icons to view figure legend
Alignments
SMED30009017 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.000051:50648..52367 +8546
Homology
BLAST of SMED30009017 vs. Planmine SMEST
Match: SMESG000020517.1 (SMESG000020517.1)

HSP 1 Score: 980.319 bits (2533), Expect = 0.000e+0
Identity = 510/512 (99.61%), Postives = 510/512 (99.61%), Query Frame = 1
Query:  118 MKIFKLDIFEKVLKFYVLFYFVMGFLVNYLWICKELDMKSDFKRILEFYNPIAMATSLMDFVSLVSVLILFKWSVSKKKTDLEKLESNILLYTIVIPTFLATIVYSSVKVILSAMEFSEKNDFILFSVMGEICLFISVIILIQFFLKSKFIVNYFQRIYIDFVVLLNIFGIVNLICYHMSVQQINNFIKIASKFPTLSKFYNLSISQPTDNESSLIKINSFLQPFVILFCFVILSYLILFYNSAHYEIQETEKLLIDEINLRTGASEEDIIASSNPTISFSFKVFQSINLPPFSLGXXXXXXXXXXXXXXXXNNMMNSPKFATEGQLISSIFPIPIYLFSIFLLIIQMNDICRWEKLGTDKYLIDRMILWVGATGQVVEIVAQISMNSYQYYPNLSGWIIAEYAILFFQTMFQTLVISLALDRKWSQPKLESWHEYLCPPVGMLSLNLSFMIFSLFDIINTKSLNVFSVELNPYLFMRIFTNGFQSFGVALAILQRLHSSLIFGKMIFFNNN 1653
            MKIFKLDIFEKVLKFYVL YFVMGFLVNYLWICKELDMKSDFKRILEFYNPIAMATSLMDFVSLVSVLILFKWSVSKKKTDLEKLESNILLYTIVIPTFLATIVYSSVKVILSAMEFSEKNDFILFSVMGEICLFISVIILIQFFLKSKFIVNYFQRIYIDFVVLLNIFGIVNLICYHMSVQQINNFIKIASKFPTLSKFYNLSISQPTDNESSLIKINSFLQPFVILFCFVILSYLILFYNSAHYEIQETEKLLIDEINLRTGASEEDIIASSNPTISFSFKVFQSINLPPFSLGLAILFITVTFFIIAIANNMMNSPKFATEGQLISSIFPIPIYLFSIFLLIIQMNDICRWEKLGTDKYLIDRMILWVGATGQVVEIVAQISMNSYQYYP LSGWIIAEYAILFFQTMFQTLVISLALDRKWSQPKLESWHEYLCPPVGMLSLNLSFMIFSLFDIINTKSLNVFSVELNPYLFMRIFTNGFQSFGVALAILQRLHSSLIFGKMIFFNNN
Sbjct:    1 MKIFKLDIFEKVLKFYVLLYFVMGFLVNYLWICKELDMKSDFKRILEFYNPIAMATSLMDFVSLVSVLILFKWSVSKKKTDLEKLESNILLYTIVIPTFLATIVYSSVKVILSAMEFSEKNDFILFSVMGEICLFISVIILIQFFLKSKFIVNYFQRIYIDFVVLLNIFGIVNLICYHMSVQQINNFIKIASKFPTLSKFYNLSISQPTDNESSLIKINSFLQPFVILFCFVILSYLILFYNSAHYEIQETEKLLIDEINLRTGASEEDIIASSNPTISFSFKVFQSINLPPFSLGLAILFITVTFFIIAIANNMMNSPKFATEGQLISSIFPIPIYLFSIFLLIIQMNDICRWEKLGTDKYLIDRMILWVGATGQVVEIVAQISMNSYQYYPKLSGWIIAEYAILFFQTMFQTLVISLALDRKWSQPKLESWHEYLCPPVGMLSLNLSFMIFSLFDIINTKSLNVFSVELNPYLFMRIFTNGFQSFGVALAILQRLHSSLIFGKMIFFNNN 512          
BLAST of SMED30009017 vs. Planmine SMEST
Match: SMESG000040891.1 (SMESG000040891.1)

HSP 1 Score: 317.39 bits (812), Expect = 1.396e-101
Identity = 201/525 (38.29%), Postives = 306/525 (58.29%), Query Frame = 1
Query:  127 FKLDIFEKVLKFYVLFYFVMGFLVNYLWICKELDMKSDFKRILEFYNPIAMATSLMDFVSLVSVLILFKWSVSKKKTDLEK-LESNILLYTIVIPTFLATIVYSSVKVILSAMEFSEKNDFILFSVMGEICLFISVIILI-------QFFLKSKFIVNYFQRIYIDFVVLLNIFGIVNLICYHMSVQQINNFIKIASKFPTLSKFYNLSISQPTDNESSLIKINSFLQPFVILFCFVILSYLILFY---NSAHYEIQETEKLLIDEINLRTGASE-EDIIASSNPTISFSFKVFQSINLPPFSLGXXXXXXXXXXXXXXXXNNMMNSPKFATEGQLISSIFPIPIYLFSIFLLIIQMNDICRWEKLGTDKYLIDRMILWVGATGQVVEIVAQISMNSYQYYPNLSGWIIAEYAILFFQTMFQTLVISLALDRKWSQPKLESWHEYLCPPVGMLSLNLSFMIFSLF----DIINTKSLNVFSVELNPYLFMRIFTNGFQSFGVALAILQRLHSSLIFGKMIFFNNN 1653
            +K +IFEK+L+   LFYFV GF   Y W CKELD  S  ++I  F+NPIA+ + +++  + +  +I    S  K++   E+ +E N+L Y +  P FLATIV++ +++ + +M+  E ND  +   +GE+ LFI    LI         FL SK       ++   FV+L +  GI+N   +HM+ QQI NFI IAS +   SK+YN S ++P +      +I  ++QP VILFC   + YLI FY    S+   + +    L +E   +   SE E++I   N  +  + K   S  LPP SL L IL ITV+   +AI N+++ S      GQ +S+IFPIPI + S+FLL +Q+ ++ RW K+  ++ ++D  ++W+GA GQ+    +Q+ + ++   P L       Y +L  QT+ QTL ISL+LDR+W  P+ +SW EY+CP VG+LS+N+SF+I ++F    D++N +       E    LF+++F NGF S G  L ILQRLHSSLIF K+I + NN
Sbjct:    5 YKYEIFEKLLQLTGLFYFVSGFFTTYCWACKELDKVSPHEQINNFWNPIAVVSGIINCFNFILTIITI--SQGKRQVQTERNIEGNLLFYVLCAPLFLATIVFTILEITVFSMKLHE-NDLTMLMSIGEMFLFIGTFFLILNINFKFWIFLGSKM------KLLNRFVMLTSFIGIINYFMFHMTDQQITNFISIASDYDAYSKYYNNS-TKPREGPFHFSRIKKYVQPLVILFCCTCMVYLIKFYFSRTSSQKNLDDNSTELSEETLDKINDSETENLIIRENEVVRSNTKNPPSFRLPPLSLVLGILLITVSLLAVAILNSLLKSTSLYFTGQYLSTIFPIPIDILSLFLLYMQIIEMERWPKIKKNENIVDSTLVWIGAIGQITIAFSQLELYTFIRDPGLVAAKDCYYFVLILQTILQTLTISLSLDREWISPERKSWQEYICPAVGILSINISFLIINVFILMGDVLNEQMAKNNITE----LFLKMFGNGFSSLGETLGILQRLHSSLIFIKIIIYTNN 515          
BLAST of SMED30009017 vs. Planmine SMEST
Match: SMESG000040922.1 (SMESG000040922.1)

HSP 1 Score: 307.375 bits (786), Expect = 6.990e-98
Identity = 186/511 (36.40%), Postives = 302/511 (59.10%), Query Frame = 1
Query:  136 DIFEKVLKFYVLFYFVMGFLVNYLWICKELDMKSDFKRILEFYNPIAMATSLMDFVSLVSVLILFKWSVSKKKTDLEKLESNILLYTIVIPTFLATIVYSSVKVILSAMEFSEKNDFILFSVMGEICLFISVIILIQFFLKSKFIVN-----YFQRIYIDFVVLLNIFGIVNLICYHMSVQQINNFIKIASKFPTLSKFYNLSISQPTDNESSLIKINSFLQPFVILFCFVILSYLILFYNSAHYEIQETEKLLIDEINLRTGASEEDIIASSNPTISFS-----FKVFQSINLPPFSLGXXXXXXXXXXXXXXXXNNMMNSPKFATEGQLISSIFPIPIYLFSIFLLIIQMNDICRWEKLGTDKYLIDRMILWVGATGQVVEIVAQISMNSYQYYPNLSGWIIAEYAILFFQTMFQTLVISLALDRKWSQPKLESWHEYLCPPVGMLSLNLSFMIFSLFDIINTKSLNVFSVELNPYLFMRIFTNGFQSFGVALAILQRLHSSLIFGKMI 1638
            D+FE++L F+ L YF++G+L NYLW C  LD  S +K I +F+NPIA+ T + + +  + ++I     +++        E   L+YT+++P+FL T+ + ++++IL+   +   NDF +     E+ LF   I LI+   K   +VN     Y Q++ ++F+    + G  N + + MS QQI+NF+K+AS F    +FY  S++  T +  +L  INS+L P  ILFC   L  + LF+N  + + Q T         L    ++  +I     T +       F   +S+N+ P  L LA++F+ ++ F+  I N+ +NS ++   GQLIS++FPIP Y  +I LL IQ+N+I  W+K+ T+++ +D+M+LW+GA GQ+V   A++ M   +   N S  IIA+Y +L  Q   QT+ +++AL+RKW +PKL+SW E L PP+ +LSLN+ F+  S+ +  N  + +     ++  LF+RIF NGFQ  G+ LAI  R+HSS+IFGKMI
Sbjct:    8 DLFEQILNFFALSYFILGYLTNYLWACNRLDYTSSYKEIFKFWNPIAVITGISNIIIGILIIIALNVRINRVSIP-NHFEYQTLIYTLLVPSFLGTVTFMAIRIILTIKSYMNFNDFTMVLSFSEMILFCCGIGLIR---KKISMVNPEVNCYLQKL-VEFINKSALIGFCNCLIHFMSAQQIDNFVKVASNFSFYFQFYGKSLTNRTVDYYNLSNINSYLVPIAILFC--CLCVICLFFNLLNNKSQNT---------LTEDQNDSQVIVQWTSTTNLLENEPIFDRVRSLNMSPLLLILALIFLAISIFLTIIINSFLNSYQYNITGQLISTVFPIPFYFLAIILLAIQINEIMEWKKISTNEFTVDKMMLWIGAAGQLVICFAKLFMEFIERTENFSALIIAKYGLLLVQIFIQTVALNMALNRKWLRPKLKSWQEKLFPPISLLSLNMGFLFISMLNDFNRNTSHSTVKNIDKRLFLRIFGNGFQLPGLILAIFHRMHSSVIFGKMI 502          
BLAST of SMED30009017 vs. Planmine SMEST
Match: SMESG000040908.1 (SMESG000040908.1)

HSP 1 Score: 260.381 bits (664), Expect = 7.440e-80
Identity = 190/512 (37.11%), Postives = 289/512 (56.45%), Query Frame = 1
Query:  127 FKLDIFEKVLKFYVLFYFVMGFLVNYLWICKELDMKSDFKRILEFYNPIAMATSLMDFVSLVSVLILFKWSVSKKKTDLEKLESNILLYTIVIPTFLATIVYSSVKVILSAMEFSEKNDFILFSVMGEICLFISVIILIQFFLKSKFIVNYFQRI-YIDFVVLLNIFGIVNLICYHMSVQQINNFIKIASKFPTLSKFYNLSI-SQPTDNESSLIKINSFLQPFVILFCFVILSYLILFY---NSAHYEIQETEKL--LIDEINLRTGASEEDIIASSNPTISFSFKVFQSINLPPFSLGXXXXXXXXXXXXXXXXNNMMNSPKFATEGQLISSIFPIPIYLFSIFLLIIQMNDICRWEKLGTDKYLIDRMILWVGATGQVVEIVAQISMNSYQYYPNLSGWIIAEYAILFFQTMFQTLVISLALDRKWSQPKLESWHEYLCPPVGMLSLNLSFMIFSLFDIINT---KSLNVFSVELNPYLFMRIFTNGFQSFGVALAILQRLHSSLIFGK 1632
            +K DI EK+L+F  L YFV+G L +Y W  KELD K+   RIL F+ PIA    +++   ++ +      +  KK       E NIL Y + IP  L ++ Y  + +I           F +F   GE+  FI+ I+ I F   SK I+   Q   +  F+ L+ I G+VN   +H+  QQI NFI +AS      K  N +I + P D +S    + +++QP VILFC + + YL++ +   N+ +  I E ++   LI+ ++ +   S+     S N   SF     +++ LPP SL L IL IT +  II I N+ +N       GQ+IS+ F   IYL SI LLI+Q+ ++ RW K   +  ++D+++ W+G  GQ++   AQIS+N Y++ P  S +++ EY  L  Q + Q + ++LALDR+   PK+++W E++CP VG+LS+NL  +  SLFD+IN    KS N +  +    +F++IF  GFQSFG  L+ILQRLHS LIFGK
Sbjct:    5 YKFDILEKILEFSCLIYFVLGCLTSYSWASKELDYKTLNSRILLFWEPIAAIMGIVNVFHIILIGFFIYKNSKKKIMKKSHKEINILFYILSIPLLLVSMSYLILLIIRDFHCQETIGKFSIFLCFGELGFFIATIVFITFINISKLIIPTKQMAQFFRFLKLITIIGMVNYFFFHIVSQQIYNFISVASNTSIYPKINNRNIPALPFDFDS----LRNYMQPLVILFCCICVIYLVIIFRLANANNPSISENDEYIQLIESVHNQQNLSQ----TSKNSNKSF----MKNLQLPPISLILGILLITSSILIIIIINSFLNDKLLYKSGQIISATFASFIYLISIVLLILQIFEMKRWRKNEENFNIVDKILTWIGVCGQLMISTAQISLNIYKFEPA-SAFLLIEYFFLIVQILLQYVTVTLALDRQCIPPKIKTWQEFICPAVGILSINLGLLFLSLFDVINANSQKSFNSYETD----MFIQIFGAGFQSFGETLSILQRLHSLLIFGK 499          
BLAST of SMED30009017 vs. Planmine SMEST
Match: SMESG000040928.1 (SMESG000040928.1)

HSP 1 Score: 190.66 bits (483), Expect = 1.111e-53
Identity = 162/517 (31.33%), Postives = 258/517 (49.90%), Query Frame = 1
Query:  118 MKIFKLDIFEKVLKFYVLFYFVMGFLVNYLWICKELDMKSDFKRILEFYNPIAMATSLMDF--VSLVSVLILFKWSVSKKKTDLEKLESNILLYTIVIPTFLATIVYSSVKVILSAMEFSEKNDFILFSVMGEICLFISVIILIQFFLKSKFIVNYFQ-RIYIDFVVLLNIFGIVNLICYHMSVQQINNFIKIASKFPTLSKFYNLSISQPTDNESSLIKINSFLQPFVILFCFVILSYLILFYNSAHYEIQETEKLLIDEINLRTGAS----EEDIIASSNPTIS--FSFKVFQSINLPPFSLGXXXXXXXXXXXXXXXXNNMMNSPKFATEGQLISSIFPIPIYLFSIFLLIIQMNDICRWEKLGTDKYLIDRMILWVGATGQVVEIVAQISMNSYQYY-PNLSGWIIAEYAILFFQTMFQTLVISLALDRKWSQPKLESWHEYLCPPVGMLSLNLSFMIFSLFDIINTKSLNVFSVELNPYLFMRIFTNGFQSFGVALAILQRLHSSLIFGKMI 1638
            +K +  D+    LK  +LF F +G   NY W C  LD  +     L F+ PIA    +MD   V L+   I   W+    + D     S IL   + IP F+ + ++  V  I+  ++ S    F  F  + E   FI  + L  + + ++   N  + + Y  F++L++  G+     +++   QI +FIK+A  +   S FYN    +  + +S    +  +LQP  I+FCFV  SYLI    S      +T+    DE +   G S      + I S+N  IS  + FK+      P FS+ L ILF T+T  ++ IA+ + +S      G+ I+  +   IY+ SI +L++QM ++ RW K    + ++D  +L++G  GQ+   ++   +  Y Y     S   I +  IL  Q   Q LVI L+L+RKW  P +++W E++CP   +   NL +  FS+F+I+N   +     E  P LF++IF NGF S  + LAILQR HSS+IF K+I
Sbjct:    2 VKFYLFDVIRNWLKLLILFSFTVGIFTNYCWACVLLDQVTPINETLIFWEPIAGINGVMDLSIVLLIVYFIRVSWNDPTIQVDFY---SKILFLFLSIPLFIGSQIHL-VWHIVGDVKLSSVGGFTEFMHVTESVFFIGTMTLNMYMITTRRTFNKTKIKEYKSFILLISAIGMFKYFLFNIVTHQIQSFIKVAENYSFYSYFYNNYSMENRNLDSHSPDLEIYLQPLTIIFCFVSFSYLIRSEFSKTLGDTDTQ---FDECSRLRGDSLSHENRESIESTNSNISNYYYFKI------PSFSIILGILFFTMTLILVLIASTLKSSE----SGKTITVSYAFSIYIVSIIILVVQMFEMKRWPKKTKIENVVDPALLYLGTAGQIFVSISTAKLYMYNYQNKEFSILTIIQNLILIVQISLQFLVIRLSLERKWIPPVVKTWQEFICPSFTLFCFNLGYFGFSVFEIMNNNIVQ----ESFP-LFLKIFGNGFYSISMTLAILQRFHSSIIFYKLI 496          
The following BLAST results are available for this feature:
BLAST of SMED30009017 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009017 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009017 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009017 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009017 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009017 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009017 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009017 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009017 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009017 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009017 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009017 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009017 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009017 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000020517.10.000e+099.61SMESG000020517.1[more]
SMESG000040891.11.396e-10138.29SMESG000040891.1[more]
SMESG000040922.16.990e-9836.40SMESG000040922.1[more]
SMESG000040908.17.440e-8037.11SMESG000040908.1[more]
SMESG000040928.11.111e-5331.33SMESG000040928.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30009017 ID=SMED30009017|Name=SMED30009017|organism=Schmidtea mediterranea sexual|type=transcript|length=1720bp
TAAAAATAGATCATTGTAAATTCTCATAAGTTCAATGTATAATTCACAGT
TCTGTCAACGTTTTTGACCATTAACTGTACAAAGTCTGAAAATTTTATTA
CAAAAAAAGTCATGAAAATGAAAATTTTCAAATTGGATATTTTTGAAAAA
GTTTTAAAGTTCTATGTGTTGTTCTATTTCGTTATGGGATTTCTGGTGAA
TTACTTGTGGATTTGTAAGGAATTAGATATGAAATCCGATTTCAAAAGAA
TTCTGGAATTCTACAACCCAATTGCCATGGCAACTAGTTTGATGGATTTT
GTCTCATTGGTTTCGGTTTTGATTCTCTTCAAGTGGTCGGTTTCGAAAAA
GAAAACCGACTTGGAAAAACTCGAATCCAACATTCTACTCTATACAATTG
TAATTCCGACCTTTCTGGCAACAATCGTCTACAGCAGCGTCAAAGTGATT
TTATCGGCAATGGAGTTTTCAGAGAAAAACGACTTCATTCTTTTTTCGGT
GATGGGAGAAATATGTTTATTTATTTCAGTGATTATTTTGATTCAATTTT
TCTTGAAATCCAAATTTATCGTCAATTATTTCCAAAGAATTTATATCGAT
TTTGTTGTGTTATTGAATATTTTTGGAATCGTGAATTTGATCTGTTACCA
TATGTCCGTTCAGCAAATAAATAATTTCATCAAAATTGCCTCAAAGTTTC
CAACTTTATCGAAATTTTACAATTTATCCATTTCTCAACCAACGGACAAC
GAGTCAAGTTTGATTAAAATTAATAGTTTTCTTCAACCATTTGTAATATT
GTTTTGTTTTGTAATACTGAGCTATTTGATTCTATTTTATAACAGTGCTC
ATTATGAAATTCAAGAAACAGAAAAATTGCTTATTGATGAAATAAATTTA
AGAACTGGAGCTTCGGAAGAAGACATAATCGCTTCTTCTAATCCGACTAT
AAGTTTTTCTTTCAAAGTCTTTCAATCGATAAATTTGCCTCCGTTTTCGC
TAGGTCTGGCGATCCTGTTTATCACTGTGACTTTTTTCATCATTGCCATT
GCAAACAACATGATGAATTCTCCCAAGTTCGCCACTGAAGGGCAGTTAAT
TTCTTCTATATTTCCTATTCCGATTTATTTGTTTTCCATATTTTTGCTAA
TAATTCAAATGAATGACATTTGCAGATGGGAAAAACTGGGCACCGATAAA
TATTTAATAGATCGAATGATTTTATGGGTCGGTGCAACTGGGCAAGTTGT
AGAAATTGTTGCTCAAATATCAATGAATTCTTATCAATATTATCCAAATC
TTTCAGGCTGGATTATTGCGGAATATGCAATTCTATTCTTTCAAACCATG
TTTCAAACTTTAGTCATCAGTTTGGCCCTCGATCGTAAATGGTCACAGCC
AAAATTGGAGTCTTGGCATGAATATTTATGTCCACCAGTTGGAATGTTAA
GTTTGAACCTATCTTTCATGATATTTTCTTTATTTGACATCATTAATACC
AAGTCTTTGAACGTTTTCTCGGTTGAACTGAACCCATATTTATTCATGAG
AATATTTACCAACGGCTTTCAATCGTTTGGAGTAGCACTCGCCATTTTGC
AACGATTACATTCTAGTTTAATATTTGGTAAAATGATATTTTTTAATAAT
AATTAAACATTATAACGATTTGTCTTGACTATCATTTGATTTCATTTAAA
AAAGTAAATCGCAATAATTT
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protein sequence of SMED30009017-orf-1

>SMED30009017-orf-1 ID=SMED30009017-orf-1|Name=SMED30009017-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=515bp
MKMKIFKLDIFEKVLKFYVLFYFVMGFLVNYLWICKELDMKSDFKRILEF
YNPIAMATSLMDFVSLVSVLILFKWSVSKKKTDLEKLESNILLYTIVIPT
FLATIVYSSVKVILSAMEFSEKNDFILFSVMGEICLFISVIILIQFFLKS
KFIVNYFQRIYIDFVVLLNIFGIVNLICYHMSVQQINNFIKIASKFPTLS
KFYNLSISQPTDNESSLIKINSFLQPFVILFCFVILSYLILFYNSAHYEI
QETEKLLIDEINLRTGASEEDIIASSNPTISFSFKVFQSINLPPFSLGLA
ILFITVTFFIIAIANNMMNSPKFATEGQLISSIFPIPIYLFSIFLLIIQM
NDICRWEKLGTDKYLIDRMILWVGATGQVVEIVAQISMNSYQYYPNLSGW
IIAEYAILFFQTMFQTLVISLALDRKWSQPKLESWHEYLCPPVGMLSLNL
SFMIFSLFDIINTKSLNVFSVELNPYLFMRIFTNGFQSFGVALAILQRLH
SSLIFGKMIFFNNN*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000026gut
PLANA:0002142parenchyma
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableTMHMMTMhelixcoord: 435..457
NoneNo IPR availableTMHMMTMhelixcoord: 89..111
NoneNo IPR availableTMHMMTMhelixcoord: 401..423
NoneNo IPR availableTMHMMTMhelixcoord: 477..496
NoneNo IPR availableTMHMMTMhelixcoord: 126..148
NoneNo IPR availableTMHMMTMhelixcoord: 54..76
NoneNo IPR availableTMHMMTMhelixcoord: 223..245
NoneNo IPR availableTMHMMTMhelixcoord: 17..34
NoneNo IPR availableTMHMMTMhelixcoord: 369..386
NoneNo IPR availableTMHMMTMhelixcoord: 161..183
NoneNo IPR availableTMHMMTMhelixcoord: 329..348
NoneNo IPR availableTMHMMTMhelixcoord: 292..314