SSRP1

Overview
NameSSRP1 (AFL48192.1)
Smed IDSMED30009016
Length (bp)2197
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SSRP1 (SMED30009016) t-SNE clustered cells

Violin plots show distribution of expression levels for SSRP1 (SMED30009016) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SSRP1 (SMED30009016) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SSRP1 (SMED30009016) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30009016

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 7

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
parenchymaSMED30009016h1SMcG0001916 JX070079smed_ncbi_20240424PMID:23629965
Zeng et al., 2013		whole organism asexual adult colorimetric in situ hybridization evidence
X1 cellSMED30009016h1SMcG0001916 SmedASXL_009161SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Smed sexual biotypeSMED30009016h1SMcG0001916 Contig53708uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30009016h1SMcG0001916 Contig53708newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
cephalic gangliaSMED30009016h1SMcG0001916 dd_Smed_v4_3904_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30009016h1SMcG0001916 dd_Smed_v4_3904_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
zeta neoblastSMED30009016h1SMcG0001916 dd_Smed_v4_3904_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of SSRP1 vs. Ensembl Human
Match: SSRP1 (structure specific recognition protein 1 [Source:HGNC Symbol;Acc:HGNC:11327])

HSP 1 Score: 369.392 bits (947), Expect = 6.136e-117
Identity = 174/420 (41.43%), Postives = 279/420 (66.43%), Query Frame = 1 
Query:   91 SLSFDNLSSEHLGYWSPIKLKLTPTTLHFKNEKTGKTGHFETKLINTAEWLYRARGYGLCIKLSNKKRYYFDGFAENEFEKVSKYFEENFRVKVKNVETCLKGWNWGQPRFEDEYMEILIDGMRSFDINLKDVNNASLNKNELTLQFQTSDEA-FSIYEMRFATVSTNENVMS--EMF-RNVVKEANILEASGDALVSLKEMHCLQPRGRYEIKLYSQFIHLRGKTYDYSVPKENFVRFYLLPHPDERQIFFVLQVNPPITHGQTRYYFIILLFNNEDEISIDLNCSEQMLQENYNGSISKNMSGLTYEVVTKLYKNLYDQKLTVPNKFESKLKARALTCSYKTTSGFLYPLDKGFIFVPKPAVSIRSDEIISVNLSRASLMQRTFDFDIEASNGITHTFNSIDKSEYNGFLEFIRAKNM 1338
            +L F+++  E  G  +  +L+L+   + FKN KTGK  + +   +    W   A G+GL +   N   Y +DGF E+EFEK+S +F+ ++R+++   + C+KGWNWG  +F  + +   I     F+I L +V+  +  KNE+TL+F  +D+A  S+ E+RF    T E+ +   E F +NV+ +A++++A+GDA+   +E+ CL PRGRY+I++Y  F+HL GKT+DY +P    +R +LLPH D+RQ+FFV+ ++PPI  GQTRY+F+ILLF+ +++IS+ LN +E+ +++ + G ++KNMSG  YE+V+++ K L ++K+TVP  F+    A+ +TCSYK +SG LYPL++GFI+V KP V IR DEI  VN +R +   R+FDF+IE   G  +TF+SI++ EY    +F+ AK +
Sbjct:    4 TLEFNDVYQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGHGLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLSFDIGDQPVFEIPLSNVSQCTTGKNEVTLEFHQNDDAEVSLMEVRFYVPPTQEDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMNEEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGFIYVHKPPVHIRFDEISFVNFARGTTTTRSFDFEIETKQGTQYTFSSIEREEYGKLFDFVNAKKL 423
[Close]
BLAST of SSRP1 vs. Ensembl Human
Match: SSRP1 (structure specific recognition protein 1 [Source:HGNC Symbol;Acc:HGNC:11327])

HSP 1 Score: 166.007 bits (419), Expect = 5.654e-47
Identity = 74/170 (43.53%), Postives = 115/170 (67.65%), Query Frame = 1 
Query:  382 ETCLKGWNWGQPRFEDEYMEILIDGMRSFDINLKDVNNASLNKNELTLQFQTSDEA-FSIYEMRFATVSTNENVMS--EMF-RNVVKEANILEASGDALVSLKEMHCLQPRGRYEIKLYSQFIHLRGKTYDYSVPKENFVRFYLLPHPDERQIFFVLQVNPPITHGQTRY 879
            + C+KGWNWG  +F  + +   I     F+I L +V+  +  KNE+TL+F  +D+A  S+ E+RF    T E+ +   E F +NV+ +A++++A+GDA+   +E+ CL PRGRY+I++Y  F+HL GKT+DY +P    +R +LLPH D+RQ+FFV+ ++PPI  GQTRY
Sbjct:    4 DLCVKGWNWGTVKFGGQLLSFDIGDQPVFEIPLSNVSQCTTGKNEVTLEFHQNDDAEVSLMEVRFYVPPTQEDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRY 173
[Close]
BLAST of SSRP1 vs. Ensembl Human
Match: SSRP1 (structure specific recognition protein 1 [Source:HGNC Symbol;Acc:HGNC:11327])

HSP 1 Score: 57.3806 bits (137), Expect = 1.057e-9
Identity = 27/73 (36.99%), Postives = 43/73 (58.90%), Query Frame = 1 
Query:  382 ETCLKGWNWGQPRFEDEYMEILIDGMRSFDINLKDVNNASLNKNELTLQFQTSDEA-FSIYEMRFATVSTNEN 597
            + C+KGWNWG  +F  + +   I     F+I L +V+  +  KNE+TL+F  +D+A  S+ E+RF    T E+
Sbjct:    4 DLCVKGWNWGTVKFGGQLLSFDIGDQPVFEIPLSNVSQCTTGKNEVTLEFHQNDDAEVSLMEVRFYVPPTQED 76
[Close]
BLAST of SSRP1 vs. Ensembl Human
Match: SMARCE1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 [Source:HGNC Symbol;Acc:HGNC:11109])

HSP 1 Score: 50.0618 bits (118), Expect = 5.748e-7
Identity = 28/65 (43.08%), Postives = 39/65 (60.00%), Query Frame = 3 
Query: 1818 YILYSNDVRDEVKRSLPPGSSIGDIAKVIGERWKTVTDAEKTKYANIYKIEHQKYLEAMKKYEKS 2012
            Y+ YS  V D+VK S  P   + +I K+IG  W+ +TD EK +Y N Y+ E  +Y E+MK Y  S
Sbjct:    3 YMRYSRKVWDQVKAS-NPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNS 66
[Close]
BLAST of SSRP1 vs. Ensembl Human
Match: SMARCE1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 [Source:HGNC Symbol;Acc:HGNC:11109])

HSP 1 Score: 50.0618 bits (118), Expect = 6.242e-7
Identity = 28/65 (43.08%), Postives = 39/65 (60.00%), Query Frame = 3 
Query: 1818 YILYSNDVRDEVKRSLPPGSSIGDIAKVIGERWKTVTDAEKTKYANIYKIEHQKYLEAMKKYEKS 2012
            Y+ YS  V D+VK S  P   + +I K+IG  W+ +TD EK +Y N Y+ E  +Y E+MK Y  S
Sbjct:    3 YMRYSRKVWDQVKAS-NPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNS 66
[Close]
BLAST of SSRP1 vs. Ensembl Celegans
Match: hmg-4 (FACT complex subunit SSRP1-A [Source:UniProtKB/Swiss-Prot;Acc:P41848])

HSP 1 Score: 268.085 bits (684), Expect = 3.403e-79
Identity = 147/426 (34.51%), Postives = 241/426 (56.57%), Query Frame = 1 
Query:   85 MSSLSFDNLSSEHLGYWSPIKLKLTPTTLHFKNEKTGKTGHFETKLINTAEWLYRARGYGLCIKLSNKKRYYFDGFAENEFEKVSKYFEENFRVKVKNVETCLKGWNWGQPRFEDEYMEILIDGMRSFDINLKDVNNASLNKNELTLQF-QTSDEAFSIYEMRFATVSTNENVMS----EMFRNVVKEANILEASGDALVSL-KEMHCLQPRGRYEIKLYSQFIHLRGKTYDYSVPKENFVRFYLLPHPDERQIFFVLQVNPPITHGQTRYYFIILLFNNEDEISIDLNCSEQMLQENYNGSISKNMSGLTYEVVTKLYKNLYDQKLTVPNKFESKLKARALTCSYKTTSGFLYPLDKGFIFVPKPAVSIRSDEIISVNLSR--ASLMQRTFDFDIEASNGITHTFNSIDKSEYNGFLEFIRAKNM 1338
            M+ L F  +  E +G+ +   LKLT  +L+FK +K GK+ +     I+  +W       GL + L++   + F GF + + EK+  +   N+   +      +KGWN+GQ   + + +E   +    F+I   +V+N   NKNE  L+F Q  D    + EMRF      EN       E F+  V     LEA  +  + L  ++ C  PRGRY+IK+Y   I L GKTYDY +P ++  R +L+PH D R ++FVL +NPPI  GQTRY ++I  F  ++E  ++L  +++ L E+ NG++ ++M+G  YE ++ L+K++ + K+TVP +F       A+ C+++   G LYP++KGF+F+ KPA+ IR +EI S + +R  +  + RTFDF+I+   G   TFN+++K E N   +++  KN+
Sbjct:    1 MAELQFPGVYVEDVGHLAFGTLKLTEKSLNFKGDKGGKSVNVTGSDIDKLKWQKLGNKPGLRVGLNDGGAHRFGGFKDTDLEKIQSFTSSNWSQSIDQSNLFIKGWNYGQAEVKGKTVEFSWEDKPIFEIPCTNVSNVIANKNEAVLEFHQNDDSKVQLMEMRFHMPIDLENEEDADKVEEFKKAVLAYAGLEAETEQPICLLTDILCTTPRGRYDIKVYPTSIALHGKTYDYKIPIKSINRLFLVPHKDGRHVYFVLSLNPPIRQGQTRYSYLIFEFGKDEEQDLELALTDEQL-ESSNGNLRRDMTGPIYETISILFKSICNLKITVPGRFLGSSGTPAIQCTHRQNPGLLYPMEKGFLFIHKPAMYIRFEEISSCHFARSDSGTVTRTFDFEIDLKYGGPLTFNAMEKEENNKLFDYLNKKNI 425
[Close]
BLAST of SSRP1 vs. Ensembl Celegans
Match: hmg-4 (FACT complex subunit SSRP1-A [Source:UniProtKB/Swiss-Prot;Acc:P41848])

HSP 1 Score: 268.085 bits (684), Expect = 3.403e-79
Identity = 147/426 (34.51%), Postives = 241/426 (56.57%), Query Frame = 1 
Query:   85 MSSLSFDNLSSEHLGYWSPIKLKLTPTTLHFKNEKTGKTGHFETKLINTAEWLYRARGYGLCIKLSNKKRYYFDGFAENEFEKVSKYFEENFRVKVKNVETCLKGWNWGQPRFEDEYMEILIDGMRSFDINLKDVNNASLNKNELTLQF-QTSDEAFSIYEMRFATVSTNENVMS----EMFRNVVKEANILEASGDALVSL-KEMHCLQPRGRYEIKLYSQFIHLRGKTYDYSVPKENFVRFYLLPHPDERQIFFVLQVNPPITHGQTRYYFIILLFNNEDEISIDLNCSEQMLQENYNGSISKNMSGLTYEVVTKLYKNLYDQKLTVPNKFESKLKARALTCSYKTTSGFLYPLDKGFIFVPKPAVSIRSDEIISVNLSR--ASLMQRTFDFDIEASNGITHTFNSIDKSEYNGFLEFIRAKNM 1338
            M+ L F  +  E +G+ +   LKLT  +L+FK +K GK+ +     I+  +W       GL + L++   + F GF + + EK+  +   N+   +      +KGWN+GQ   + + +E   +    F+I   +V+N   NKNE  L+F Q  D    + EMRF      EN       E F+  V     LEA  +  + L  ++ C  PRGRY+IK+Y   I L GKTYDY +P ++  R +L+PH D R ++FVL +NPPI  GQTRY ++I  F  ++E  ++L  +++ L E+ NG++ ++M+G  YE ++ L+K++ + K+TVP +F       A+ C+++   G LYP++KGF+F+ KPA+ IR +EI S + +R  +  + RTFDF+I+   G   TFN+++K E N   +++  KN+
Sbjct:    1 MAELQFPGVYVEDVGHLAFGTLKLTEKSLNFKGDKGGKSVNVTGSDIDKLKWQKLGNKPGLRVGLNDGGAHRFGGFKDTDLEKIQSFTSSNWSQSIDQSNLFIKGWNYGQAEVKGKTVEFSWEDKPIFEIPCTNVSNVIANKNEAVLEFHQNDDSKVQLMEMRFHMPIDLENEEDADKVEEFKKAVLAYAGLEAETEQPICLLTDILCTTPRGRYDIKVYPTSIALHGKTYDYKIPIKSINRLFLVPHKDGRHVYFVLSLNPPIRQGQTRYSYLIFEFGKDEEQDLELALTDEQL-ESSNGNLRRDMTGPIYETISILFKSICNLKITVPGRFLGSSGTPAIQCTHRQNPGLLYPMEKGFLFIHKPAMYIRFEEISSCHFARSDSGTVTRTFDFEIDLKYGGPLTFNAMEKEENNKLFDYLNKKNI 425
[Close]
BLAST of SSRP1 vs. Ensembl Celegans
Match: hmg-3 (FACT complex subunit ssrp1-B [Source:UniProtKB/Swiss-Prot;Acc:O01683])

HSP 1 Score: 252.292 bits (643), Expect = 1.625e-73
Identity = 137/426 (32.16%), Postives = 239/426 (56.10%), Query Frame = 1 
Query:   85 MSSLSFDNLSSEHLGYWSPIKLKLTPTTLHFKNEKTGKTGHFETKLINTAEWLYRARGYGLCIKLSNKKRYYFDGFAENEFEKVSKYFEENFRVKVKNVETCLKGWNWGQPRFEDEYMEILIDGMRSFDINLKDVNNASLNKNELTLQFQTSDEA-FSIYEMRFATVSTNENVMS----EMFRNVVKEANILEASGDALVSL-KEMHCLQPRGRYEIKLYSQFIHLRGKTYDYSVPKENFVRFYLLPHPDERQIFFVLQVNPPITHGQTRYYFIILLFNNEDEISIDLNCSEQMLQENYNGSISKNMSGLTYEVVTKLYKNLYDQKLTVPNKFESKLKARALTCSYKTTSGFLYPLDKGFIFVPKPAVSIRSDEIISVNLSR--ASLMQRTFDFDIEASNGITHTFNSIDKSEYNGFLEFIRAKNM 1338
            M+ L F  +  E +G+ +   L LT  +++F  +K GK+ +     ++  +W       GL + LS+   + F GF +++ +K+  +   N+   +      + GWN+GQ   + + +E   +    F+I   +V+N   NKNE  L+F  ++++   + EMRF      EN       E F+  V     LEA  +  + L  ++ C  PRGRY+IK+Y   I L GKTYDY +P +   R +L+PH D RQ++FVL +NPPI  GQT Y ++I  F  ++E  ++L+ +++ L + +NG++ + M+G  YE ++ L+K++ + K+TVP +F       A+ C+++   G LYP++KGF+F+ KP + IR +EI S + +R  +  + RTFDF+I+   G + TF+++DK E N   +++  K +
Sbjct:    1 MTELKFKGVYVEDIGHLTCGTLTLTENSINFIGDKGGKSVYITGTDVDKLKWQKLGNKPGLRVGLSDGGAHRFGGFLDDDLQKIQSFTSSNWSKSINQSNLFINGWNYGQADVKGKNIEFSWENEPIFEIPCTNVSNVIANKNEAILEFHQNEQSKVQLMEMRFHMPVDLENEEDTDKVEEFKKAVLAYAGLEAETEQPICLLTDILCTTPRGRYDIKVYPTSIALHGKTYDYKIPVKTINRLFLVPHKDGRQVYFVLSLNPPIRQGQTHYSYLIFEFGKDEEEDLELSLTDEQL-DYFNGNLQREMTGPIYETISILFKSICNLKVTVPGRFLGSSGTPAIQCTHRQNLGLLYPMEKGFLFIQKPVMYIRFEEISSCHFARSDSGTVTRTFDFEIDLKTGSSLTFSAMDKEENNKLFDYLNKKEI 425
[Close]
BLAST of SSRP1 vs. Ensembl Fly
Match: Ssrp (gene:FBgn0010278 transcript:FBtr0072242)

HSP 1 Score: 315.464 bits (807), Expect = 1.492e-96
Identity = 158/423 (37.35%), Postives = 257/423 (60.76%), Query Frame = 1 
Query:   91 SLSFDNLSSEHLGYWSPIKLKLTPTTLHFKNEKTGKTGHFETK---LINTAEWLYRARGYGLCIKLSNKKRYYFDGFAENEFEKVSKYFEENFRVKVKNVETCLKGWNWGQPRFEDEYMEILIDGMRSFDINLKDVNNASLNKNELTLQFQTSDEA-FSIYEMRF---ATVSTNENVMSEMFRNVVKEANILEASGDALVSLKEMHCLQPRGRYEIKLYSQFIHLRGKTYDYSVPKENFVRFYLLPHPDERQIFFVLQVNPPITHGQTRYYFIILLFNNEDEISIDLNCSEQMLQENYNGSISKNMSGLTYEVVTKLYKNLYDQKLTVPNKFESKLKARALTCSYKTTSGFLYPLDKGFIFVPKPAVSIRSDEIISVNLSRASLMQRTFDFDIEASNGITHTFNSIDKSEYNGFLEFIRAKNM 1338
            SL ++++++E  G     +LK+T   + FKN KTGK      +   LIN+ +++     +GL +       + F GF ++E EK+ K+ +  +  ++   E C+KGWNWG  RF    +    +    F++ L  V+     KNE+TL+F  +D+A   + EMRF   A  S  E+ + +  +NV+ +A+++ ASG+++   +E+  L PRGRY+IK++S F  L GKT+DY +P ++ +R ++LPH D RQ+FFVL ++PPI  GQTRY++++LLF  ++E +I+L  SE  L++ Y G + K +SG  YEV+ K+ K L  +K+T P  F       A+ CS+K  +G+LYPL++GFI++ KP + IR +EI SVN +R+    R+FDF++   NG  H F+SI+K EY    ++I  K +
Sbjct:    4 SLEYNDINAEVRGVLCSGRLKMTEQNIIFKNTKTGKVEQISAEDIDLINSQKFVGT---WGLRVFTKGGVLHRFTGFRDSEHEKLGKFIKAAYSQEMVEKEMCVKGWNWGTARFMGSVLSFDKESKTIFEVPLSHVSQCVTGKNEVTLEFHQNDDAPVGLLEMRFHIPAVESAEEDPVDKFHQNVMSKASVISASGESIAIFREIQILTPRGRYDIKIFSTFFQLHGKTFDYKIPMDSVLRLFMLPHKDSRQMFFVLSLDPPIKQGQTRYHYLVLLFAPDEETTIELPFSEAELRDKYEGKLEKEISGPVYEVMGKVMKVLIGRKITGPGNFIGHSGTAAVGCSFKAAAGYLYPLERGFIYIHKPPLHIRFEEISSVNFARSGGSTRSFDFEVTLKNGTVHIFSSIEKEEYAKLFDYITQKKL 423
[Close]
BLAST of SSRP1 vs. Ensembl Fly
Match: HmgZ (gene:FBgn0010228 transcript:FBtr0345488)

HSP 1 Score: 46.9802 bits (110), Expect = 4.171e-6
Identity = 27/69 (39.13%), Postives = 45/69 (65.22%), Query Frame = 3 
Query: 1809 LSAYILYSNDVRDEVKRSLPPGSSIGDIAKVIGERWKTVTDAEKTKYANIYKIEHQKYLEAMKKYEKSG 2015
            LSAY+L+ N+ R+++K+   PGS + DIAK  GE W+ + D  KT++        ++Y +A+K+YE +G
Sbjct:   10 LSAYMLWLNETREQIKKD-NPGSKVTDIAKRGGELWRGLKD--KTEWEQKAIKMKEEYNKAVKEYEANG 75
[Close]
BLAST of SSRP1 vs. Ensembl Fly
Match: HmgZ (gene:FBgn0010228 transcript:FBtr0071673)

HSP 1 Score: 46.9802 bits (110), Expect = 4.171e-6
Identity = 27/69 (39.13%), Postives = 45/69 (65.22%), Query Frame = 3 
Query: 1809 LSAYILYSNDVRDEVKRSLPPGSSIGDIAKVIGERWKTVTDAEKTKYANIYKIEHQKYLEAMKKYEKSG 2015
            LSAY+L+ N+ R+++K+   PGS + DIAK  GE W+ + D  KT++        ++Y +A+K+YE +G
Sbjct:   10 LSAYMLWLNETREQIKKD-NPGSKVTDIAKRGGELWRGLKD--KTEWEQKAIKMKEEYNKAVKEYEANG 75
[Close]
BLAST of SSRP1 vs. Ensembl Fly
Match: HmgZ (gene:FBgn0010228 transcript:FBtr0071674)

HSP 1 Score: 46.9802 bits (110), Expect = 4.171e-6
Identity = 27/69 (39.13%), Postives = 45/69 (65.22%), Query Frame = 3 
Query: 1809 LSAYILYSNDVRDEVKRSLPPGSSIGDIAKVIGERWKTVTDAEKTKYANIYKIEHQKYLEAMKKYEKSG 2015
            LSAY+L+ N+ R+++K+   PGS + DIAK  GE W+ + D  KT++        ++Y +A+K+YE +G
Sbjct:   10 LSAYMLWLNETREQIKKD-NPGSKVTDIAKRGGELWRGLKD--KTEWEQKAIKMKEEYNKAVKEYEANG 75
[Close]
BLAST of SSRP1 vs. Ensembl Fly
Match: HmgZ (gene:FBgn0010228 transcript:FBtr0342960)

HSP 1 Score: 46.9802 bits (110), Expect = 4.171e-6
Identity = 27/69 (39.13%), Postives = 45/69 (65.22%), Query Frame = 3 
Query: 1809 LSAYILYSNDVRDEVKRSLPPGSSIGDIAKVIGERWKTVTDAEKTKYANIYKIEHQKYLEAMKKYEKSG 2015
            LSAY+L+ N+ R+++K+   PGS + DIAK  GE W+ + D  KT++        ++Y +A+K+YE +G
Sbjct:   10 LSAYMLWLNETREQIKKD-NPGSKVTDIAKRGGELWRGLKD--KTEWEQKAIKMKEEYNKAVKEYEANG 75
[Close]
BLAST of SSRP1 vs. Ensembl Zebrafish
Match: ssrp1b (structure specific recognition protein 1b [Source:ZFIN;Acc:ZDB-GENE-041008-209])

HSP 1 Score: 363.614 bits (932), Expect = 4.724e-117
Identity = 169/421 (40.14%), Postives = 272/421 (64.61%), Query Frame = 1 
Query:   91 SLSFDNLSSEHLGYWSPIKLKLTPTTLHFKNEKTGKTGHFETKLINTAEWLYRARGYGLCIKLSNKKRYYFDGFAENEFEKVSKYFEENFRVKVKNVETCLKGWNWGQPRFEDEYMEILIDGMRSFDINLKDVNNASLNKNELTLQF-QTSDEAFSIYEMRFATVSTNENVMS---EMF-RNVVKEANILEASGDALVSLKEMHCLQPRGRYEIKLYSQFIHLRGKTYDYSVPKENFVRFYLLPHPDERQIFFVLQVNPPITHGQTRYYFIILLFNNEDEISIDLNCSEQMLQENYNGSISKNMSGLTYEVVTKLYKNLYDQKLTVPNKFESKLKARALTCSYKTTSGFLYPLDKGFIFVPKPAVSIRSDEIISVNLSRASLMQRTFDFDIEASNGITHTFNSIDKSEYNGFLEFIRAKNM 1338
            +L F+ +  E  G W+  +L+ +  T+ +KN KTGK        +  A+W     G+G+ +  S    Y +DGF + + EK+S+YF++N++V++   + C+KGWNWG  +F    +   ++   +F+I L  V+  +  KNE+T++F Q  D   S+ E+RF    T  +  S   E F +NV+ +A++++A+GDA+   +E+ CL PRGRY+I++Y  F+HL GKT+DY +P    +R +LLPH D+RQ+FFV+ ++PPI  GQTRY+F+ILLF+ E+ IS+ LN +E  ++  + G ++KNMSG  YE+V+++ K L ++K+TVP  F+    A+ +TCSYK +SG LYPL++GFI+V KP V +R +EI  VN +R +   R+FDF+IE   G  +TF+SI++ EY    +F+ AK +
Sbjct:    4 TLEFNEIYQEVKGSWNDGRLRFSKQTVVYKNSKTGKVDTIPVPELTQAQWRRVCLGHGIKLWTSTGHIYKYDGFKDADLEKISEYFKDNYKVELTEKDMCVKGWNWGTAKFNGPLLSFDVNDSPTFEIPLSSVSQCTTGKNEVTVEFHQNDDTEVSLMEVRFYVPPTTGDEGSDPVEAFAQNVLSKADVIQATGDAVCIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKEETISLTLNMNEDEVERRFEGKLNKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGFIYVHKPPVHLRFEEIACVNFARGTTTTRSFDFEIETKQGNQYTFSSIEREEYGKLFDFVNAKKL 424
[Close]
BLAST of SSRP1 vs. Ensembl Zebrafish
Match: ssrp1a (structure specific recognition protein 1a [Source:ZFIN;Acc:ZDB-GENE-031118-9])

HSP 1 Score: 362.844 bits (930), Expect = 1.135e-116
Identity = 164/421 (38.95%), Postives = 272/421 (64.61%), Query Frame = 1 
Query:   91 SLSFDNLSSEHLGYWSPIKLKLTPTTLHFKNEKTGKTGHFETKLINTAEWLYRARGYGLCIKLSNKKRYYFDGFAENEFEKVSKYFEENFRVKVKNVETCLKGWNWGQPRFEDEYMEILIDGMRSFDINLKDVNNASLNKNELTLQFQTSDEA-FSIYEMRF----ATVSTNENVMSEMFRNVVKEANILEASGDALVSLKEMHCLQPRGRYEIKLYSQFIHLRGKTYDYSVPKENFVRFYLLPHPDERQIFFVLQVNPPITHGQTRYYFIILLFNNEDEISIDLNCSEQMLQENYNGSISKNMSGLTYEVVTKLYKNLYDQKLTVPNKFESKLKARALTCSYKTTSGFLYPLDKGFIFVPKPAVSIRSDEIISVNLSRASLMQRTFDFDIEASNGITHTFNSIDKSEYNGFLEFIRAKNM 1338
            +L F+++  E  G W+  +L+ +  T+ +K+ KTGK        ++ A+W     G+GL +  S    Y +DGF E ++EK+S +F+ N++V+++  + C+KGWNWG  +F    +   +     F+I L  V+  +  KNE+T++F  +D+A  S+ E+RF     T     + +    +N++ +A++++A+GDA+   KE+ CL PRGRY+I++Y  F+HL GKT+DY +P    +R +LLPH D+RQ+FFV+ ++PPI  GQTRY+F+ILLF+ +++IS+ LN SE  +++ Y G +SKNMSG  YE+V+++ K L ++K+TVP  F+    ++ +TC+YK +SG LYPL++GFI+V KP V +R +EI  VN +R +   R+FDF+IE       TF++I++ EY    +F+ AK +
Sbjct:    4 TLEFNDIHQEVKGSWNDGRLRFSKQTVVYKSHKTGKVDSIPAPDLSEAQWRRVCLGHGLKLATSTGHIYKYDGFKETDYEKISAFFKANYKVELEEKDMCVKGWNWGTAKFAGSLLSFDVSDSPVFEIPLSSVSQCATGKNEVTVEFHQNDDAEVSLMEVRFYVPPNTGDDGSDPVEAFAQNILSKADVIQATGDAVCIFKELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLALNMSEDEVEKRYEGKLSKNMSGPLYEIVSRVMKALVNRKITVPGNFQGHSGSQCITCAYKASSGLLYPLERGFIYVHKPPVHLRFEEISCVNFARGTTTTRSFDFEIETKQNNQFTFSNIEREEYGKLFDFVNAKKL 424
[Close]
BLAST of SSRP1 vs. Ensembl Zebrafish
Match: ssrp1b (structure specific recognition protein 1b [Source:ZFIN;Acc:ZDB-GENE-041008-209])

HSP 1 Score: 363.229 bits (931), Expect = 3.928e-115
Identity = 169/421 (40.14%), Postives = 272/421 (64.61%), Query Frame = 1 
Query:   91 SLSFDNLSSEHLGYWSPIKLKLTPTTLHFKNEKTGKTGHFETKLINTAEWLYRARGYGLCIKLSNKKRYYFDGFAENEFEKVSKYFEENFRVKVKNVETCLKGWNWGQPRFEDEYMEILIDGMRSFDINLKDVNNASLNKNELTLQF-QTSDEAFSIYEMRFATVSTNENVMS---EMF-RNVVKEANILEASGDALVSLKEMHCLQPRGRYEIKLYSQFIHLRGKTYDYSVPKENFVRFYLLPHPDERQIFFVLQVNPPITHGQTRYYFIILLFNNEDEISIDLNCSEQMLQENYNGSISKNMSGLTYEVVTKLYKNLYDQKLTVPNKFESKLKARALTCSYKTTSGFLYPLDKGFIFVPKPAVSIRSDEIISVNLSRASLMQRTFDFDIEASNGITHTFNSIDKSEYNGFLEFIRAKNM 1338
            +L F+ +  E  G W+  +L+ +  T+ +KN KTGK        +  A+W     G+G+ +  S    Y +DGF + + EK+S+YF++N++V++   + C+KGWNWG  +F    +   ++   +F+I L  V+  +  KNE+T++F Q  D   S+ E+RF    T  +  S   E F +NV+ +A++++A+GDA+   +E+ CL PRGRY+I++Y  F+HL GKT+DY +P    +R +LLPH D+RQ+FFV+ ++PPI  GQTRY+F+ILLF+ E+ IS+ LN +E  ++  + G ++KNMSG  YE+V+++ K L ++K+TVP  F+    A+ +TCSYK +SG LYPL++GFI+V KP V +R +EI  VN +R +   R+FDF+IE   G  +TF+SI++ EY    +F+ AK +
Sbjct:    4 TLEFNEIYQEVKGSWNDGRLRFSKQTVVYKNSKTGKVDTIPVPELTQAQWRRVCLGHGIKLWTSTGHIYKYDGFKDADLEKISEYFKDNYKVELTEKDMCVKGWNWGTAKFNGPLLSFDVNDSPTFEIPLSSVSQCTTGKNEVTVEFHQNDDTEVSLMEVRFYVPPTTGDEGSDPVEAFAQNVLSKADVIQATGDAVCIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKEETISLTLNMNEDEVERRFEGKLNKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGFIYVHKPPVHLRFEEIACVNFARGTTTTRSFDFEIETKQGNQYTFSSIEREEYGKLFDFVNAKKL 424
[Close]
BLAST of SSRP1 vs. Ensembl Zebrafish
Match: ssrp1b (structure specific recognition protein 1b [Source:ZFIN;Acc:ZDB-GENE-041008-209])

HSP 1 Score: 363.614 bits (932), Expect = 4.540e-115
Identity = 169/421 (40.14%), Postives = 272/421 (64.61%), Query Frame = 1 
Query:   91 SLSFDNLSSEHLGYWSPIKLKLTPTTLHFKNEKTGKTGHFETKLINTAEWLYRARGYGLCIKLSNKKRYYFDGFAENEFEKVSKYFEENFRVKVKNVETCLKGWNWGQPRFEDEYMEILIDGMRSFDINLKDVNNASLNKNELTLQF-QTSDEAFSIYEMRFATVSTNENVMS---EMF-RNVVKEANILEASGDALVSLKEMHCLQPRGRYEIKLYSQFIHLRGKTYDYSVPKENFVRFYLLPHPDERQIFFVLQVNPPITHGQTRYYFIILLFNNEDEISIDLNCSEQMLQENYNGSISKNMSGLTYEVVTKLYKNLYDQKLTVPNKFESKLKARALTCSYKTTSGFLYPLDKGFIFVPKPAVSIRSDEIISVNLSRASLMQRTFDFDIEASNGITHTFNSIDKSEYNGFLEFIRAKNM 1338
            +L F+ +  E  G W+  +L+ +  T+ +KN KTGK        +  A+W     G+G+ +  S    Y +DGF + + EK+S+YF++N++V++   + C+KGWNWG  +F    +   ++   +F+I L  V+  +  KNE+T++F Q  D   S+ E+RF    T  +  S   E F +NV+ +A++++A+GDA+   +E+ CL PRGRY+I++Y  F+HL GKT+DY +P    +R +LLPH D+RQ+FFV+ ++PPI  GQTRY+F+ILLF+ E+ IS+ LN +E  ++  + G ++KNMSG  YE+V+++ K L ++K+TVP  F+    A+ +TCSYK +SG LYPL++GFI+V KP V +R +EI  VN +R +   R+FDF+IE   G  +TF+SI++ EY    +F+ AK +
Sbjct:    4 TLEFNEIYQEVKGSWNDGRLRFSKQTVVYKNSKTGKVDTIPVPELTQAQWRRVCLGHGIKLWTSTGHIYKYDGFKDADLEKISEYFKDNYKVELTEKDMCVKGWNWGTAKFNGPLLSFDVNDSPTFEIPLSSVSQCTTGKNEVTVEFHQNDDTEVSLMEVRFYVPPTTGDEGSDPVEAFAQNVLSKADVIQATGDAVCIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKEETISLTLNMNEDEVERRFEGKLNKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGFIYVHKPPVHLRFEEIACVNFARGTTTTRSFDFEIETKQGNQYTFSSIEREEYGKLFDFVNAKKL 424
[Close]
BLAST of SSRP1 vs. Ensembl Zebrafish
Match: ssrp1b (structure specific recognition protein 1b [Source:ZFIN;Acc:ZDB-GENE-041008-209])

HSP 1 Score: 363.229 bits (931), Expect = 8.171e-115
Identity = 169/421 (40.14%), Postives = 272/421 (64.61%), Query Frame = 1 
Query:   91 SLSFDNLSSEHLGYWSPIKLKLTPTTLHFKNEKTGKTGHFETKLINTAEWLYRARGYGLCIKLSNKKRYYFDGFAENEFEKVSKYFEENFRVKVKNVETCLKGWNWGQPRFEDEYMEILIDGMRSFDINLKDVNNASLNKNELTLQF-QTSDEAFSIYEMRFATVSTNENVMS---EMF-RNVVKEANILEASGDALVSLKEMHCLQPRGRYEIKLYSQFIHLRGKTYDYSVPKENFVRFYLLPHPDERQIFFVLQVNPPITHGQTRYYFIILLFNNEDEISIDLNCSEQMLQENYNGSISKNMSGLTYEVVTKLYKNLYDQKLTVPNKFESKLKARALTCSYKTTSGFLYPLDKGFIFVPKPAVSIRSDEIISVNLSRASLMQRTFDFDIEASNGITHTFNSIDKSEYNGFLEFIRAKNM 1338
            +L F+ +  E  G W+  +L+ +  T+ +KN KTGK        +  A+W     G+G+ +  S    Y +DGF + + EK+S+YF++N++V++   + C+KGWNWG  +F    +   ++   +F+I L  V+  +  KNE+T++F Q  D   S+ E+RF    T  +  S   E F +NV+ +A++++A+GDA+   +E+ CL PRGRY+I++Y  F+HL GKT+DY +P    +R +LLPH D+RQ+FFV+ ++PPI  GQTRY+F+ILLF+ E+ IS+ LN +E  ++  + G ++KNMSG  YE+V+++ K L ++K+TVP  F+    A+ +TCSYK +SG LYPL++GFI+V KP V +R +EI  VN +R +   R+FDF+IE   G  +TF+SI++ EY    +F+ AK +
Sbjct:    4 TLEFNEIYQEVKGSWNDGRLRFSKQTVVYKNSKTGKVDTIPVPELTQAQWRRVCLGHGIKLWTSTGHIYKYDGFKDADLEKISEYFKDNYKVELTEKDMCVKGWNWGTAKFNGPLLSFDVNDSPTFEIPLSSVSQCTTGKNEVTVEFHQNDDTEVSLMEVRFYVPPTTGDEGSDPVEAFAQNVLSKADVIQATGDAVCIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKEETISLTLNMNEDEVERRFEGKLNKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGFIYVHKPPVHLRFEEIACVNFARGTTTTRSFDFEIETKQGNQYTFSSIEREEYGKLFDFVNAKKL 424
[Close]
BLAST of SSRP1 vs. Ensembl Xenopus
Match: rad52 (RAD52 homolog, DNA repair protein [Source:Xenbase;Acc:XB-GENE-991154])

HSP 1 Score: 356.295 bits (913), Expect = 1.507e-114
Identity = 162/402 (40.30%), Postives = 262/402 (65.17%), Query Frame = 1 
Query:  145 KLKLTPTTLHFKNEKTGKTGHFETKLINTAEWLYRARGYGLCIKLSNKKRYYFDGFAENEFEKVSKYFEENFRVKVKNVETCLKGWNWGQPRFEDEYMEILIDGMRSFDINLKDVNNASLNKNELTLQF-QTSDEAFSIYEMRFATVSTNEN---VMSEMFRNVVKEANILEASGDALVSLKEMHCLQPRGRYEIKLYSQFIHLRGKTYDYSVPKENFVRFYLLPHPDERQIFFVLQVNPPITHGQTRYYFIILLFNNEDEISIDLNCSEQMLQENYNGSISKNMSGLTYEVVTKLYKNLYDQKLTVPNKFESKLKARALTCSYKTTSGFLYPLDKGFIFVPKPAVSIRSDEIISVNLSRASLMQRTFDFDIEASNGITHTFNSIDKSEYNGFLEFIRAKNM 1338
            +L+L+   L +KN KTGK  +     I    W   A G+G+ +  +    Y +DGF + E++K+  YF+ +FRV++   + C+KGWNWG  RF  + +   I    +F++ L +V+  +  KNE+TL+F Q  D   S+ E+RF    T ++    +    +NV+ +A++++A+GDA+   +E+ CL PRGRY+I++Y  F+HL GKT+DY +P    +R +LLPH D+RQ+FFV+ ++PPI  GQTRY+F+ILLF+ ++++++ LN SE+ ++  + G + KNMSG  YE+V+++ K L ++K+TVP  F+    ++ +TCSYK +SG LYPL++GFI+V KP V IR DE+  VN +R +   R+FDF+IE   G  +TF+SI++ EY    +F+ AK +
Sbjct:   13 RLRLSRAGLMYKNNKTGKVENISAADIAEVVWRRVALGHGIKLLTNGGHVYKYDGFRDTEYDKLFDYFKSHFRVELVEKDLCVKGWNWGSVRFGGQLLSFDIGDQPAFELPLSNVSQCTTGKNEVTLEFHQNDDSEVSLMEIRFYVPPTQDDGGDPVEAFAQNVLSKADVIQATGDAVCIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDMTLTLNMSEEEVERRFEGKLKKNMSGCLYEMVSRVMKALVNRKITVPGNFQGHSGSQCITCSYKASSGLLYPLERGFIYVHKPPVHIRFDEVNCVNFARGTTTTRSFDFEIETKQGSQYTFSSIEREEYGKLFDFVNAKKL 414
[Close]
BLAST of SSRP1 vs. Ensembl Xenopus
Match: rad52 (RAD52 homolog, DNA repair protein [Source:Xenbase;Acc:XB-GENE-991154])

HSP 1 Score: 355.91 bits (912), Expect = 4.157e-114
Identity = 162/402 (40.30%), Postives = 262/402 (65.17%), Query Frame = 1 
Query:  145 KLKLTPTTLHFKNEKTGKTGHFETKLINTAEWLYRARGYGLCIKLSNKKRYYFDGFAENEFEKVSKYFEENFRVKVKNVETCLKGWNWGQPRFEDEYMEILIDGMRSFDINLKDVNNASLNKNELTLQF-QTSDEAFSIYEMRFATVSTNEN---VMSEMFRNVVKEANILEASGDALVSLKEMHCLQPRGRYEIKLYSQFIHLRGKTYDYSVPKENFVRFYLLPHPDERQIFFVLQVNPPITHGQTRYYFIILLFNNEDEISIDLNCSEQMLQENYNGSISKNMSGLTYEVVTKLYKNLYDQKLTVPNKFESKLKARALTCSYKTTSGFLYPLDKGFIFVPKPAVSIRSDEIISVNLSRASLMQRTFDFDIEASNGITHTFNSIDKSEYNGFLEFIRAKNM 1338
            +L+L+   L +KN KTGK  +     I    W   A G+G+ +  +    Y +DGF + E++K+  YF+ +FRV++   + C+KGWNWG  RF  + +   I    +F++ L +V+  +  KNE+TL+F Q  D   S+ E+RF    T ++    +    +NV+ +A++++A+GDA+   +E+ CL PRGRY+I++Y  F+HL GKT+DY +P    +R +LLPH D+RQ+FFV+ ++PPI  GQTRY+F+ILLF+ ++++++ LN SE+ ++  + G + KNMSG  YE+V+++ K L ++K+TVP  F+    ++ +TCSYK +SG LYPL++GFI+V KP V IR DE+  VN +R +   R+FDF+IE   G  +TF+SI++ EY    +F+ AK +
Sbjct:   13 RLRLSRAGLMYKNNKTGKVENISAADIAEVVWRRVALGHGIKLLTNGGHVYKYDGFRDTEYDKLFDYFKSHFRVELVEKDLCVKGWNWGSVRFGGQLLSFDIGDQPAFELPLSNVSQCTTGKNEVTLEFHQNDDSEVSLMEIRFYVPPTQDDGGDPVEAFAQNVLSKADVIQATGDAVCIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDMTLTLNMSEEEVERRFEGKLKKNMSGCLYEMVSRVMKALVNRKITVPGNFQGHSGSQCITCSYKASSGLLYPLERGFIYVHKPPVHIRFDEVNCVNFARGTTTTRSFDFEIETKQGSQYTFSSIEREEYGKLFDFVNAKKL 414
[Close]
BLAST of SSRP1 vs. Ensembl Xenopus
Match: rad52 (RAD52 homolog, DNA repair protein [Source:Xenbase;Acc:XB-GENE-991154])

HSP 1 Score: 360.147 bits (923), Expect = 7.197e-114
Identity = 166/420 (39.52%), Postives = 271/420 (64.52%), Query Frame = 1 
Query:   91 SLSFDNLSSEHLGYWSPIKLKLTPTTLHFKNEKTGKTGHFETKLINTAEWLYRARGYGLCIKLSNKKRYYFDGFAENEFEKVSKYFEENFRVKVKNVETCLKGWNWGQPRFEDEYMEILIDGMRSFDINLKDVNNASLNKNELTLQF-QTSDEAFSIYEMRFATVSTNEN---VMSEMFRNVVKEANILEASGDALVSLKEMHCLQPRGRYEIKLYSQFIHLRGKTYDYSVPKENFVRFYLLPHPDERQIFFVLQVNPPITHGQTRYYFIILLFNNEDEISIDLNCSEQMLQENYNGSISKNMSGLTYEVVTKLYKNLYDQKLTVPNKFESKLKARALTCSYKTTSGFLYPLDKGFIFVPKPAVSIRSDEIISVNLSRASLMQRTFDFDIEASNGITHTFNSIDKSEYNGFLEFIRAKNM 1338
            +L F+++  E  G  +  +L+L+   L +KN KTGK  +     I    W   A G+G+ +  +    Y +DGF + E++K+  YF+ +FRV++   + C+KGWNWG  RF  + +   I    +F++ L +V+  +  KNE+TL+F Q  D   S+ E+RF    T ++    +    +NV+ +A++++A+GDA+   +E+ CL PRGRY+I++Y  F+HL GKT+DY +P    +R +LLPH D+RQ+FFV+ ++PPI  GQTRY+F+ILLF+ ++++++ LN SE+ ++  + G + KNMSG  YE+V+++ K L ++K+TVP  F+    ++ +TCSYK +SG LYPL++GFI+V KP V IR DE+  VN +R +   R+FDF+IE   G  +TF+SI++ EY    +F+ AK +
Sbjct:    4 TLEFNDIYQEVKGSMNDGRLRLSRAGLMYKNNKTGKVENISAADIAEVVWRRVALGHGIKLLTNGGHVYKYDGFRDTEYDKLFDYFKSHFRVELVEKDLCVKGWNWGSVRFGGQLLSFDIGDQPAFELPLSNVSQCTTGKNEVTLEFHQNDDSEVSLMEIRFYVPPTQDDGGDPVEAFAQNVLSKADVIQATGDAVCIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDMTLTLNMSEEEVERRFEGKLKKNMSGCLYEMVSRVMKALVNRKITVPGNFQGHSGSQCITCSYKASSGLLYPLERGFIYVHKPPVHIRFDEVNCVNFARGTTTTRSFDFEIETKQGSQYTFSSIEREEYGKLFDFVNAKKL 423
[Close]
BLAST of SSRP1 vs. Ensembl Xenopus
Match: rad52 (RAD52 homolog, DNA repair protein [Source:Xenbase;Acc:XB-GENE-991154])

HSP 1 Score: 360.147 bits (923), Expect = 1.265e-113
Identity = 166/420 (39.52%), Postives = 271/420 (64.52%), Query Frame = 1 
Query:   91 SLSFDNLSSEHLGYWSPIKLKLTPTTLHFKNEKTGKTGHFETKLINTAEWLYRARGYGLCIKLSNKKRYYFDGFAENEFEKVSKYFEENFRVKVKNVETCLKGWNWGQPRFEDEYMEILIDGMRSFDINLKDVNNASLNKNELTLQF-QTSDEAFSIYEMRFATVSTNEN---VMSEMFRNVVKEANILEASGDALVSLKEMHCLQPRGRYEIKLYSQFIHLRGKTYDYSVPKENFVRFYLLPHPDERQIFFVLQVNPPITHGQTRYYFIILLFNNEDEISIDLNCSEQMLQENYNGSISKNMSGLTYEVVTKLYKNLYDQKLTVPNKFESKLKARALTCSYKTTSGFLYPLDKGFIFVPKPAVSIRSDEIISVNLSRASLMQRTFDFDIEASNGITHTFNSIDKSEYNGFLEFIRAKNM 1338
            +L F+++  E  G  +  +L+L+   L +KN KTGK  +     I    W   A G+G+ +  +    Y +DGF + E++K+  YF+ +FRV++   + C+KGWNWG  RF  + +   I    +F++ L +V+  +  KNE+TL+F Q  D   S+ E+RF    T ++    +    +NV+ +A++++A+GDA+   +E+ CL PRGRY+I++Y  F+HL GKT+DY +P    +R +LLPH D+RQ+FFV+ ++PPI  GQTRY+F+ILLF+ ++++++ LN SE+ ++  + G + KNMSG  YE+V+++ K L ++K+TVP  F+    ++ +TCSYK +SG LYPL++GFI+V KP V IR DE+  VN +R +   R+FDF+IE   G  +TF+SI++ EY    +F+ AK +
Sbjct:    4 TLEFNDIYQEVKGSMNDGRLRLSRAGLMYKNNKTGKVENISAADIAEVVWRRVALGHGIKLLTNGGHVYKYDGFRDTEYDKLFDYFKSHFRVELVEKDLCVKGWNWGSVRFGGQLLSFDIGDQPAFELPLSNVSQCTTGKNEVTLEFHQNDDSEVSLMEIRFYVPPTQDDGGDPVEAFAQNVLSKADVIQATGDAVCIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDMTLTLNMSEEEVERRFEGKLKKNMSGCLYEMVSRVMKALVNRKITVPGNFQGHSGSQCITCSYKASSGLLYPLERGFIYVHKPPVHIRFDEVNCVNFARGTTTTRSFDFEIETKQGSQYTFSSIEREEYGKLFDFVNAKKL 423
[Close]
BLAST of SSRP1 vs. Ensembl Xenopus
Match: rad52 (RAD52 homolog, DNA repair protein [Source:Xenbase;Acc:XB-GENE-991154])

HSP 1 Score: 356.295 bits (913), Expect = 4.319e-112
Identity = 162/402 (40.30%), Postives = 262/402 (65.17%), Query Frame = 1 
Query:  145 KLKLTPTTLHFKNEKTGKTGHFETKLINTAEWLYRARGYGLCIKLSNKKRYYFDGFAENEFEKVSKYFEENFRVKVKNVETCLKGWNWGQPRFEDEYMEILIDGMRSFDINLKDVNNASLNKNELTLQF-QTSDEAFSIYEMRFATVSTNEN---VMSEMFRNVVKEANILEASGDALVSLKEMHCLQPRGRYEIKLYSQFIHLRGKTYDYSVPKENFVRFYLLPHPDERQIFFVLQVNPPITHGQTRYYFIILLFNNEDEISIDLNCSEQMLQENYNGSISKNMSGLTYEVVTKLYKNLYDQKLTVPNKFESKLKARALTCSYKTTSGFLYPLDKGFIFVPKPAVSIRSDEIISVNLSRASLMQRTFDFDIEASNGITHTFNSIDKSEYNGFLEFIRAKNM 1338
            +L+L+   L +KN KTGK  +     I    W   A G+G+ +  +    Y +DGF + E++K+  YF+ +FRV++   + C+KGWNWG  RF  + +   I    +F++ L +V+  +  KNE+TL+F Q  D   S+ E+RF    T ++    +    +NV+ +A++++A+GDA+   +E+ CL PRGRY+I++Y  F+HL GKT+DY +P    +R +LLPH D+RQ+FFV+ ++PPI  GQTRY+F+ILLF+ ++++++ LN SE+ ++  + G + KNMSG  YE+V+++ K L ++K+TVP  F+    ++ +TCSYK +SG LYPL++GFI+V KP V IR DE+  VN +R +   R+FDF+IE   G  +TF+SI++ EY    +F+ AK +
Sbjct:   13 RLRLSRAGLMYKNNKTGKVENISAADIAEVVWRRVALGHGIKLLTNGGHVYKYDGFRDTEYDKLFDYFKSHFRVELVEKDLCVKGWNWGSVRFGGQLLSFDIGDQPAFELPLSNVSQCTTGKNEVTLEFHQNDDSEVSLMEIRFYVPPTQDDGGDPVEAFAQNVLSKADVIQATGDAVCIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDMTLTLNMSEEEVERRFEGKLKKNMSGCLYEMVSRVMKALVNRKITVPGNFQGHSGSQCITCSYKASSGLLYPLERGFIYVHKPPVHIRFDEVNCVNFARGTTTTRSFDFEIETKQGSQYTFSSIEREEYGKLFDFVNAKKL 414
[Close]
BLAST of SSRP1 vs. Ensembl Mouse
Match: Ssrp1 (structure specific recognition protein 1 [Source:MGI Symbol;Acc:MGI:107912])

HSP 1 Score: 369.392 bits (947), Expect = 3.981e-118
Identity = 174/420 (41.43%), Postives = 279/420 (66.43%), Query Frame = 1 
Query:   91 SLSFDNLSSEHLGYWSPIKLKLTPTTLHFKNEKTGKTGHFETKLINTAEWLYRARGYGLCIKLSNKKRYYFDGFAENEFEKVSKYFEENFRVKVKNVETCLKGWNWGQPRFEDEYMEILIDGMRSFDINLKDVNNASLNKNELTLQFQTSDEA-FSIYEMRFATVSTNENVMS--EMF-RNVVKEANILEASGDALVSLKEMHCLQPRGRYEIKLYSQFIHLRGKTYDYSVPKENFVRFYLLPHPDERQIFFVLQVNPPITHGQTRYYFIILLFNNEDEISIDLNCSEQMLQENYNGSISKNMSGLTYEVVTKLYKNLYDQKLTVPNKFESKLKARALTCSYKTTSGFLYPLDKGFIFVPKPAVSIRSDEIISVNLSRASLMQRTFDFDIEASNGITHTFNSIDKSEYNGFLEFIRAKNM 1338
            +L F+++  E  G  +  +L+L+   + FKN KTGK  + +   +    W   A G+GL +   N   Y +DGF E+EFEK+S +F+ ++R+++   + C+KGWNWG  +F  + +   I     F+I L +V+  +  KNE+TL+F  +D+A  S+ E+RF    T E+ +   E F +NV+ +A++++A+GDA+   +E+ CL PRGRY+I++Y  F+HL GKT+DY +P    +R +LLPH D+RQ+FFV+ ++PPI  GQTRY+F+ILLF+ +++IS+ LN +E+ +++ + G ++KNMSG  YE+V+++ K L ++K+TVP  F+    A+ +TCSYK +SG LYPL++GFI+V KP V IR DEI  VN +R +   R+FDF+IE   G  +TF+SI++ EY    +F+ AK +
Sbjct:    4 TLEFNDIFQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGHGLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLSFDIGDQPVFEIPLSNVSQCTTGKNEVTLEFHQNDDAEVSLMEVRFYVPPTQEDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMNEEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGFIYVHKPPVHIRFDEISFVNFARGTTTTRSFDFEIETKQGTQYTFSSIEREEYGKLFDFVNAKKL 423
[Close]
BLAST of SSRP1 vs. Ensembl Mouse
Match: Ssrp1 (structure specific recognition protein 1 [Source:MGI Symbol;Acc:MGI:107912])

HSP 1 Score: 369.007 bits (946), Expect = 5.946e-117
Identity = 174/420 (41.43%), Postives = 279/420 (66.43%), Query Frame = 1 
Query:   91 SLSFDNLSSEHLGYWSPIKLKLTPTTLHFKNEKTGKTGHFETKLINTAEWLYRARGYGLCIKLSNKKRYYFDGFAENEFEKVSKYFEENFRVKVKNVETCLKGWNWGQPRFEDEYMEILIDGMRSFDINLKDVNNASLNKNELTLQFQTSDEA-FSIYEMRFATVSTNENVMS--EMF-RNVVKEANILEASGDALVSLKEMHCLQPRGRYEIKLYSQFIHLRGKTYDYSVPKENFVRFYLLPHPDERQIFFVLQVNPPITHGQTRYYFIILLFNNEDEISIDLNCSEQMLQENYNGSISKNMSGLTYEVVTKLYKNLYDQKLTVPNKFESKLKARALTCSYKTTSGFLYPLDKGFIFVPKPAVSIRSDEIISVNLSRASLMQRTFDFDIEASNGITHTFNSIDKSEYNGFLEFIRAKNM 1338
            +L F+++  E  G  +  +L+L+   + FKN KTGK  + +   +    W   A G+GL +   N   Y +DGF E+EFEK+S +F+ ++R+++   + C+KGWNWG  +F  + +   I     F+I L +V+  +  KNE+TL+F  +D+A  S+ E+RF    T E+ +   E F +NV+ +A++++A+GDA+   +E+ CL PRGRY+I++Y  F+HL GKT+DY +P    +R +LLPH D+RQ+FFV+ ++PPI  GQTRY+F+ILLF+ +++IS+ LN +E+ +++ + G ++KNMSG  YE+V+++ K L ++K+TVP  F+    A+ +TCSYK +SG LYPL++GFI+V KP V IR DEI  VN +R +   R+FDF+IE   G  +TF+SI++ EY    +F+ AK +
Sbjct:    4 TLEFNDIFQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGHGLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLSFDIGDQPVFEIPLSNVSQCTTGKNEVTLEFHQNDDAEVSLMEVRFYVPPTQEDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMNEEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGFIYVHKPPVHIRFDEISFVNFARGTTTTRSFDFEIETKQGTQYTFSSIEREEYGKLFDFVNAKKL 423
[Close]
BLAST of SSRP1 vs. Ensembl Mouse
Match: Ssrp1 (structure specific recognition protein 1 [Source:MGI Symbol;Acc:MGI:107912])

HSP 1 Score: 369.007 bits (946), Expect = 5.946e-117
Identity = 174/420 (41.43%), Postives = 279/420 (66.43%), Query Frame = 1 
Query:   91 SLSFDNLSSEHLGYWSPIKLKLTPTTLHFKNEKTGKTGHFETKLINTAEWLYRARGYGLCIKLSNKKRYYFDGFAENEFEKVSKYFEENFRVKVKNVETCLKGWNWGQPRFEDEYMEILIDGMRSFDINLKDVNNASLNKNELTLQFQTSDEA-FSIYEMRFATVSTNENVMS--EMF-RNVVKEANILEASGDALVSLKEMHCLQPRGRYEIKLYSQFIHLRGKTYDYSVPKENFVRFYLLPHPDERQIFFVLQVNPPITHGQTRYYFIILLFNNEDEISIDLNCSEQMLQENYNGSISKNMSGLTYEVVTKLYKNLYDQKLTVPNKFESKLKARALTCSYKTTSGFLYPLDKGFIFVPKPAVSIRSDEIISVNLSRASLMQRTFDFDIEASNGITHTFNSIDKSEYNGFLEFIRAKNM 1338
            +L F+++  E  G  +  +L+L+   + FKN KTGK  + +   +    W   A G+GL +   N   Y +DGF E+EFEK+S +F+ ++R+++   + C+KGWNWG  +F  + +   I     F+I L +V+  +  KNE+TL+F  +D+A  S+ E+RF    T E+ +   E F +NV+ +A++++A+GDA+   +E+ CL PRGRY+I++Y  F+HL GKT+DY +P    +R +LLPH D+RQ+FFV+ ++PPI  GQTRY+F+ILLF+ +++IS+ LN +E+ +++ + G ++KNMSG  YE+V+++ K L ++K+TVP  F+    A+ +TCSYK +SG LYPL++GFI+V KP V IR DEI  VN +R +   R+FDF+IE   G  +TF+SI++ EY    +F+ AK +
Sbjct:    4 TLEFNDIFQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGHGLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLSFDIGDQPVFEIPLSNVSQCTTGKNEVTLEFHQNDDAEVSLMEVRFYVPPTQEDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMNEEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGFIYVHKPPVHIRFDEISFVNFARGTTTTRSFDFEIETKQGTQYTFSSIEREEYGKLFDFVNAKKL 423
[Close]
BLAST of SSRP1 vs. Ensembl Mouse
Match: Smarce1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 [Source:MGI Symbol;Acc:MGI:1927347])

HSP 1 Score: 52.373 bits (124), Expect = 1.351e-6
Identity = 29/68 (42.65%), Postives = 40/68 (58.82%), Query Frame = 3 
Query: 1809 LSAYILYSNDVRDEVKRSLPPGSSIGDIAKVIGERWKTVTDAEKTKYANIYKIEHQKYLEAMKKYEKS 2012
            L  Y+ YS  V D+VK S  P   + +I K+IG  W+ +TD EK +Y N Y+ E  +Y E+MK Y  S
Sbjct:   70 LMPYMRYSRKVWDQVKAS-NPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNS 136
[Close]
BLAST of SSRP1 vs. UniProt/SwissProt
Match: sp|Q08945|SSRP1_HUMAN (FACT complex subunit SSRP1 OS=Homo sapiens OX=9606 GN=SSRP1 PE=1 SV=1)

HSP 1 Score: 369.392 bits (947), Expect = 2.947e-116
Identity = 174/420 (41.43%), Postives = 279/420 (66.43%), Query Frame = 1 
Query:   91 SLSFDNLSSEHLGYWSPIKLKLTPTTLHFKNEKTGKTGHFETKLINTAEWLYRARGYGLCIKLSNKKRYYFDGFAENEFEKVSKYFEENFRVKVKNVETCLKGWNWGQPRFEDEYMEILIDGMRSFDINLKDVNNASLNKNELTLQFQTSDEA-FSIYEMRFATVSTNENVMS--EMF-RNVVKEANILEASGDALVSLKEMHCLQPRGRYEIKLYSQFIHLRGKTYDYSVPKENFVRFYLLPHPDERQIFFVLQVNPPITHGQTRYYFIILLFNNEDEISIDLNCSEQMLQENYNGSISKNMSGLTYEVVTKLYKNLYDQKLTVPNKFESKLKARALTCSYKTTSGFLYPLDKGFIFVPKPAVSIRSDEIISVNLSRASLMQRTFDFDIEASNGITHTFNSIDKSEYNGFLEFIRAKNM 1338
            +L F+++  E  G  +  +L+L+   + FKN KTGK  + +   +    W   A G+GL +   N   Y +DGF E+EFEK+S +F+ ++R+++   + C+KGWNWG  +F  + +   I     F+I L +V+  +  KNE+TL+F  +D+A  S+ E+RF    T E+ +   E F +NV+ +A++++A+GDA+   +E+ CL PRGRY+I++Y  F+HL GKT+DY +P    +R +LLPH D+RQ+FFV+ ++PPI  GQTRY+F+ILLF+ +++IS+ LN +E+ +++ + G ++KNMSG  YE+V+++ K L ++K+TVP  F+    A+ +TCSYK +SG LYPL++GFI+V KP V IR DEI  VN +R +   R+FDF+IE   G  +TF+SI++ EY    +F+ AK +
Sbjct:    4 TLEFNDVYQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGHGLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLSFDIGDQPVFEIPLSNVSQCTTGKNEVTLEFHQNDDAEVSLMEVRFYVPPTQEDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMNEEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGFIYVHKPPVHIRFDEISFVNFARGTTTTRSFDFEIETKQGTQYTFSSIEREEYGKLFDFVNAKKL 423
[Close]
BLAST of SSRP1 vs. UniProt/SwissProt
Match: sp|Q04678|SSRP1_CHICK (FACT complex subunit SSRP1 OS=Gallus gallus OX=9031 GN=SSRP1 PE=2 SV=2)

HSP 1 Score: 369.392 bits (947), Expect = 3.058e-116
Identity = 174/420 (41.43%), Postives = 278/420 (66.19%), Query Frame = 1 
Query:   91 SLSFDNLSSEHLGYWSPIKLKLTPTTLHFKNEKTGKTGHFETKLINTAEWLYRARGYGLCIKLSNKKRYYFDGFAENEFEKVSKYFEENFRVKVKNVETCLKGWNWGQPRFEDEYMEILIDGMRSFDINLKDVNNASLNKNELTLQFQTSDEA-FSIYEMRFATVSTNENVMS--EMF-RNVVKEANILEASGDALVSLKEMHCLQPRGRYEIKLYSQFIHLRGKTYDYSVPKENFVRFYLLPHPDERQIFFVLQVNPPITHGQTRYYFIILLFNNEDEISIDLNCSEQMLQENYNGSISKNMSGLTYEVVTKLYKNLYDQKLTVPNKFESKLKARALTCSYKTTSGFLYPLDKGFIFVPKPAVSIRSDEIISVNLSRASLMQRTFDFDIEASNGITHTFNSIDKSEYNGFLEFIRAKNM 1338
            +L F+ +  E  G  +  +L+L+   + FKN KTGK  + +   +    W   A G+GL +   N   Y +DGF E+EF+K+S +F+ ++R+++   + C+KGWNWG  RF  + +   I     F+I L +V+  +  KNE+TL+F  +D+A  S+ E+RF    T E+ +   E F +NV+ +A++++A+GDA+   +E+ CL PRGRY+I++Y  F+HL GKT+DY +P    +R +LLPH D+RQ+FFV+ ++PPI  GQTRY+F+ILLF+ +++IS+ LN +E+ +++ + G ++KNMSG  YE+V+++ K L ++K+TVP  F+    A+ +TCSYK +SG LYPL++GFI+V KP V IR DEI  VN +R +   R+FDF+IE   G  +TF+SI++ EY    +F+ AK +
Sbjct:    4 TLEFNEIYQEVKGSMNDGRLRLSRQGVIFKNSKTGKVDNIQASELAEGVWRRVALGHGLKLLTKNGHVYKYDGFRESEFDKLSDFFKAHYRLELAEKDLCVKGWNWGTVRFGGQLLSFDIGEQPVFEIPLSNVSQCTTGKNEVTLEFHQNDDAEVSLMEVRFYVPPTQEDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMNEEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGFIYVHKPPVHIRFDEISFVNFARGTTTTRSFDFEIETKQGTQYTFSSIEREEYGKLFDFVNAKKL 423
[Close]
BLAST of SSRP1 vs. UniProt/SwissProt
Match: sp|Q04931|SSRP1_RAT (FACT complex subunit SSRP1 OS=Rattus norvegicus OX=10116 GN=Ssrp1 PE=1 SV=2)

HSP 1 Score: 369.007 bits (946), Expect = 3.682e-116
Identity = 174/420 (41.43%), Postives = 279/420 (66.43%), Query Frame = 1 
Query:   91 SLSFDNLSSEHLGYWSPIKLKLTPTTLHFKNEKTGKTGHFETKLINTAEWLYRARGYGLCIKLSNKKRYYFDGFAENEFEKVSKYFEENFRVKVKNVETCLKGWNWGQPRFEDEYMEILIDGMRSFDINLKDVNNASLNKNELTLQFQTSDEA-FSIYEMRFATVSTNENVMS--EMF-RNVVKEANILEASGDALVSLKEMHCLQPRGRYEIKLYSQFIHLRGKTYDYSVPKENFVRFYLLPHPDERQIFFVLQVNPPITHGQTRYYFIILLFNNEDEISIDLNCSEQMLQENYNGSISKNMSGLTYEVVTKLYKNLYDQKLTVPNKFESKLKARALTCSYKTTSGFLYPLDKGFIFVPKPAVSIRSDEIISVNLSRASLMQRTFDFDIEASNGITHTFNSIDKSEYNGFLEFIRAKNM 1338
            +L F+++  E  G  +  +L+L+   + FKN KTGK  + +   +    W   A G+GL +   N   Y +DGF E+EFEK+S +F+ ++R+++   + C+KGWNWG  +F  + +   I     F+I L +V+  +  KNE+TL+F  +D+A  S+ E+RF    T E+ +   E F +NV+ +A++++A+GDA+   +E+ CL PRGRY+I++Y  F+HL GKT+DY +P    +R +LLPH D+RQ+FFV+ ++PPI  GQTRY+F+ILLF+ +++IS+ LN +E+ +++ + G ++KNMSG  YE+V+++ K L ++K+TVP  F+    A+ +TCSYK +SG LYPL++GFI+V KP V IR DEI  VN +R +   R+FDF+IE   G  +TF+SI++ EY    +F+ AK +
Sbjct:    4 TLEFNDIFQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGHGLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLSFDIGDQPVFEIPLSNVSQCTTGKNEVTLEFHQNDDAEVSLMEVRFYVPPTQEDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMNEEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGFIYVHKPPVHIRFDEISFVNFARGTTTTRSFDFEIETKQGTQYTFSSIEREEYGKLFDFVNAKKL 423
[Close]
BLAST of SSRP1 vs. UniProt/SwissProt
Match: sp|Q08943|SSRP1_MOUSE (FACT complex subunit SSRP1 OS=Mus musculus OX=10090 GN=Ssrp1 PE=1 SV=2)

HSP 1 Score: 369.007 bits (946), Expect = 4.159e-116
Identity = 174/420 (41.43%), Postives = 279/420 (66.43%), Query Frame = 1 
Query:   91 SLSFDNLSSEHLGYWSPIKLKLTPTTLHFKNEKTGKTGHFETKLINTAEWLYRARGYGLCIKLSNKKRYYFDGFAENEFEKVSKYFEENFRVKVKNVETCLKGWNWGQPRFEDEYMEILIDGMRSFDINLKDVNNASLNKNELTLQFQTSDEA-FSIYEMRFATVSTNENVMS--EMF-RNVVKEANILEASGDALVSLKEMHCLQPRGRYEIKLYSQFIHLRGKTYDYSVPKENFVRFYLLPHPDERQIFFVLQVNPPITHGQTRYYFIILLFNNEDEISIDLNCSEQMLQENYNGSISKNMSGLTYEVVTKLYKNLYDQKLTVPNKFESKLKARALTCSYKTTSGFLYPLDKGFIFVPKPAVSIRSDEIISVNLSRASLMQRTFDFDIEASNGITHTFNSIDKSEYNGFLEFIRAKNM 1338
            +L F+++  E  G  +  +L+L+   + FKN KTGK  + +   +    W   A G+GL +   N   Y +DGF E+EFEK+S +F+ ++R+++   + C+KGWNWG  +F  + +   I     F+I L +V+  +  KNE+TL+F  +D+A  S+ E+RF    T E+ +   E F +NV+ +A++++A+GDA+   +E+ CL PRGRY+I++Y  F+HL GKT+DY +P    +R +LLPH D+RQ+FFV+ ++PPI  GQTRY+F+ILLF+ +++IS+ LN +E+ +++ + G ++KNMSG  YE+V+++ K L ++K+TVP  F+    A+ +TCSYK +SG LYPL++GFI+V KP V IR DEI  VN +R +   R+FDF+IE   G  +TF+SI++ EY    +F+ AK +
Sbjct:    4 TLEFNDIFQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGHGLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLSFDIGDQPVFEIPLSNVSQCTTGKNEVTLEFHQNDDAEVSLMEVRFYVPPTQEDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMNEEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGFIYVHKPPVHIRFDEISFVNFARGTTTTRSFDFEIETKQGTQYTFSSIEREEYGKLFDFVNAKKL 423
[Close]
BLAST of SSRP1 vs. UniProt/SwissProt
Match: sp|Q9W602|SSRP1_XENLA (FACT complex subunit SSRP1 OS=Xenopus laevis OX=8355 GN=ssrp1 PE=1 SV=1)

HSP 1 Score: 356.295 bits (913), Expect = 1.787e-111
Identity = 166/420 (39.52%), Postives = 269/420 (64.05%), Query Frame = 1 
Query:   91 SLSFDNLSSEHLGYWSPIKLKLTPTTLHFKNEKTGKTGHFETKLINTAEWLYRARGYGLCIKLSNKKRYYFDGFAENEFEKVSKYFEENFRVKVKNVETCLKGWNWGQPRFEDEYMEILIDGMRSFDINLKDVNNASLNKNELTLQF-QTSDEAFSIYEMRFATVSTNEN---VMSEMFRNVVKEANILEASGDALVSLKEMHCLQPRGRYEIKLYSQFIHLRGKTYDYSVPKENFVRFYLLPHPDERQIFFVLQVNPPITHGQTRYYFIILLFNNEDEISIDLNCSEQMLQENYNGSISKNMSGLTYEVVTKLYKNLYDQKLTVPNKFESKLKARALTCSYKTTSGFLYPLDKGFIFVPKPAVSIRSDEIISVNLSRASLMQRTFDFDIEASNGITHTFNSIDKSEYNGFLEFIRAKNM 1338
            +L F+++  E  G  +  +L+L+   L +KN KTGK  +     I    W   A G+G+ +  +    Y +DGF E E++K+  YF+ +F V++   + C+KGWNWG  RF  + +   I    +F++ L +V+  +  KNE+TL+F Q  D   S+ E+RF    T ++    +    +NV+ +A++++A+GDA+   +E+ CL PRGRY+I++Y  F+HL GKT+DY +P    +R +LLPH D+RQ+FFV+ ++PPI  GQTRY+F+ILLF+ ++++++ LN SE+ ++  + G + K+MSG  YE+V+++ K L ++K+TVP  F     ++ +TCSYK +SG LYPL++GFI+V KP V IR DEI  VN +R +   R+FDF+IE   G  +TF+SI++ EY    +F+ AK +
Sbjct:    4 TLEFNDIYQEVKGSMNDGRLRLSRAGLMYKNNKTGKVENISAADIAEVVWRRVALGHGIKLLTNGGHVYKYDGFRETEYDKLFDYFKSHFSVELVEKDLCVKGWNWGSVRFGGQLLSFDIGDQPAFELPLSNVSQCTTGKNEVTLEFHQNDDSEVSLMEIRFYVPPTQDDGGDSVEAFAQNVLSKADVIQATGDAVCIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDMTLTLNMSEEEVERRFEGKLKKSMSGCLYEMVSRVMKALVNRKITVPGNFLGHSGSQCITCSYKASSGLLYPLERGFIYVHKPPVHIRFDEITCVNFARGTTTTRSFDFEIETKQGSQYTFSSIEREEYGKLFDFVNAKKL 423
[Close]
BLAST of SSRP1 vs. TrEMBL
Match: M9NLM9 (FACT complex subunit SSRP1 OS=Schmidtea mediterranea OX=79327 PE=2 SV=1)

HSP 1 Score: 872.848 bits (2254), Expect = 0.000e+0
Identity = 415/416 (99.76%), Postives = 416/416 (100.00%), Query Frame = 1 
Query:   85 MSSLSFDNLSSEHLGYWSPIKLKLTPTTLHFKNEKTGKTGHFETKLINTAEWLYRARGYGLCIKLSNKKRYYFDGFAENEFEKVSKYFEENFRVKVKNVETCLKGWNWGQPRFEDEYMEILIDGMRSFDINLKDVNNASLNKNELTLQFQTSDEAFSIYEMRFATVSTNENVMSEMFRNVVKEANILEASGDALVSLKEMHCLQPRGRYEIKLYSQFIHLRGKTYDYSVPKENFVRFYLLPHPDERQIFFVLQVNPPITHGQTRYYFIILLFNNEDEISIDLNCSEQMLQENYNGSISKNMSGLTYEVVTKLYKNLYDQKLTVPNKFESKLKARALTCSYKTTSGFLYPLDKGFIFVPKPAVSIRSDEIISVNLSRASLMQRTFDFDIEASNGITHTFNSIDKSEYNGFLEFIRAK 1332
            MSSLSFDNLSSEHLGYWSPIKLKLTPTTLHFKNEKTGKTGHFETKLINTAEWLYRARGYGLCIKLSNKKRYYFDGFAENEFEKVSKYFEENFRVKVKNVETCLKGWNWGQPRFEDEYMEILIDGMRSFDINLKDVNNASLNKNELTLQFQTSDEAFSIYEMRFATVSTNENVMSEMFRNVVKEANILEASGDALVSLKEMHCLQPRGRYEIKLYSQFIHLRGKTYDYSVPKENFVRFYLLPHPDERQIFFVLQVNPPITHGQTRYYFIILLFNNEDEISIDLNCS+QMLQENYNGSISKNMSGLTYEVVTKLYKNLYDQKLTVPNKFESKLKARALTCSYKTTSGFLYPLDKGFIFVPKPAVSIRSDEIISVNLSRASLMQRTFDFDIEASNGITHTFNSIDKSEYNGFLEFIRAK
Sbjct:    1 MSSLSFDNLSSEHLGYWSPIKLKLTPTTLHFKNEKTGKTGHFETKLINTAEWLYRARGYGLCIKLSNKKRYYFDGFAENEFEKVSKYFEENFRVKVKNVETCLKGWNWGQPRFEDEYMEILIDGMRSFDINLKDVNNASLNKNELTLQFQTSDEAFSIYEMRFATVSTNENVMSEMFRNVVKEANILEASGDALVSLKEMHCLQPRGRYEIKLYSQFIHLRGKTYDYSVPKENFVRFYLLPHPDERQIFFVLQVNPPITHGQTRYYFIILLFNNEDEISIDLNCSDQMLQENYNGSISKNMSGLTYEVVTKLYKNLYDQKLTVPNKFESKLKARALTCSYKTTSGFLYPLDKGFIFVPKPAVSIRSDEIISVNLSRASLMQRTFDFDIEASNGITHTFNSIDKSEYNGFLEFIRAK 416

HSP 2 Score: 369.007 bits (946), Expect = 5.236e-114
Identity = 266/267 (99.63%), Postives = 267/267 (100.00%), Query Frame = 3 
Query: 1326 SKKYVLSNGESVTRQEDWSSSDGSHDGYLERMKEEGKRSRARDAKVIVQXXXXXXXXXXXFNPEEVGESDVAXXXXXXXXXXXXXXXXNAGDAPSKVATSEKSTDEKPAKTKESIKKQVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSAYILYSNDVRDEVKRSLPPGSSIGDIAKVIGERWKTVTDAEKTKYANIYKIEHQKYLEAMKKYEKSGIAPEKVTKSQPKGEILGKLSAGVFKSEEFVESSDTSD 2126
            +KKYVLSNGESVTRQEDWSSSDGSHDGYLERMKEEGKRSRARDAKVIVQDDDDDDEDDEDFNPEEVGESDVAEEYDSEVSPSSSSEDSNAGDAPSKVATSEKSTDEKPAKTKESIKKQVIKAKVDKVVEKKSDKKSDKKASAGDTGTKKKKKKDPNAPKKPLSAYILYSNDVRDEVKRSLPPGSSIGDIAKVIGERWKTVTDAEKTKYANIYKIEHQKYLEAMKKYEKSGIAPEKVTKSQPKGEILGKLSAGVFKSEEFVESSDTSD
Sbjct:  415 AKKYVLSNGESVTRQEDWSSSDGSHDGYLERMKEEGKRSRARDAKVIVQDDDDDDEDDEDFNPEEVGESDVAEEYDSEVSPSSSSEDSNAGDAPSKVATSEKSTDEKPAKTKESIKKQVIKAKVDKVVEKKSDKKSDKKASAGDTGTKKKKKKDPNAPKKPLSAYILYSNDVRDEVKRSLPPGSSIGDIAKVIGERWKTVTDAEKTKYANIYKIEHQKYLEAMKKYEKSGIAPEKVTKSQPKGEILGKLSAGVFKSEEFVESSDTSD 681
[Close]
BLAST of SSRP1 vs. TrEMBL
Match: G4LWM1 (FACT complex subunit SSRP1 OS=Schistosoma mansoni OX=6183 GN=Smp_148930 PE=3 SV=1)

HSP 1 Score: 421.394 bits (1082), Expect = 1.045e-134
Identity = 192/422 (45.50%), Postives = 280/422 (66.35%), Query Frame = 1 
Query:   85 MSSLSFDNLSSEHLGYWSPIKLKLTPTTLHFKNEKTGKTGHFETKLINTAEWLYRARGYGLCIKLSNKKRYYFDGFAENEFEKVSKYFEENFRVKVKNVETCLKGWNWGQPRFEDEYMEILIDGMRSFDINLKDVNNASLNKNELTLQFQTSDEA-FSIYEMRFATVSTN---ENVMSEMFRNVVKEANILEASGDALVSLKEMHCLQPRGRYEIKLYSQFIHLRGKTYDYSVPKENFVRFYLLPHPDERQIFFVLQVNPPITHGQTRYYFIILLFNNEDEISIDLNCSEQMLQENYNGSISKNMSGLTYEVVTKLYKNLYDQKLTVPNKFESKLKARALTCSYKTTSGFLYPLDKGFIFVPKPAVSIRSDEIISVNLSRASLMQRTFDFDIEASNGITHTFNSIDKSEYNGFLEFIRAKNM 1338
            M+ ++FD+++ E  G   P KL+L      +KNEKTGK  HF    I +A+W+ RA G GL IKL N   + +DGF E E EKV  +F++ F V++   E C KG+NWG   F+ + +E  +    +F++ L +V NA LNKNE+  +F  +DEA   + EMR  T  T    E     ++  V ++A+I++ +GD L   K++ CLQPRGRY++KLY  FIHL GK+YD+ VPK    R  +LPHPD RQIFF +Q++PPI HGQTRY+F++ LF+ +  I++++  +E  LQE +NG +++N+SG  YEVV +++K LYDQK+TVP  F +K    A+ CSYK + G LYPL++GF FVP+P +SIR DEI++V  SR +  QR+FDF++E  NG+THTF SI++ EY+   +F+ AK +
Sbjct:    1 MADIAFDHITQEVRGTVYPGKLRLKEDEFMYKNEKTGKVDHFSRSDIESAQWIVRATGLGLSIKLRNNSLHRYDGFGEIEAEKVGSFFKKYFDVEIVKRELCYKGYNWGDVDFDGDVLEFSVKNAMAFEVPLSNVANAVLNKNEIIFEFHLNDEAEICLSEMRLYTPGTEADREGKAPAIYSKVTQKADIIQVTGDFLAEFKQLQCLQPRGRYDVKLYPSFIHLHGKSYDFKVPKNTITRLMVLPHPDNRQIFFAVQLDPPIKHGQTRYHFVVSLFDKDSHINLEMAATEDWLQEQFNGKLTRNISGPEYEVVARVFKVLYDQKVTVPGSFSAKGGGCAVACSYKASVGLLYPLERGFTFVPRPPISIRFDEIVAVQFSRGTGAQRSFDFEVETRNGLTHTFTSIERDEYHHLYDFVTAKKL 422
[Close]
BLAST of SSRP1 vs. TrEMBL
Match: A0A183QUA8 (FACT complex subunit SSRP1 OS=Schistosoma rodhaini OX=6188 PE=3 SV=1)

HSP 1 Score: 421.779 bits (1083), Expect = 2.365e-134
Identity = 193/422 (45.73%), Postives = 280/422 (66.35%), Query Frame = 1 
Query:   85 MSSLSFDNLSSEHLGYWSPIKLKLTPTTLHFKNEKTGKTGHFETKLINTAEWLYRARGYGLCIKLSNKKRYYFDGFAENEFEKVSKYFEENFRVKVKNVETCLKGWNWGQPRFEDEYMEILIDGMRSFDINLKDVNNASLNKNELTLQFQTSDEA-FSIYEMRFATVSTN---ENVMSEMFRNVVKEANILEASGDALVSLKEMHCLQPRGRYEIKLYSQFIHLRGKTYDYSVPKENFVRFYLLPHPDERQIFFVLQVNPPITHGQTRYYFIILLFNNEDEISIDLNCSEQMLQENYNGSISKNMSGLTYEVVTKLYKNLYDQKLTVPNKFESKLKARALTCSYKTTSGFLYPLDKGFIFVPKPAVSIRSDEIISVNLSRASLMQRTFDFDIEASNGITHTFNSIDKSEYNGFLEFIRAKNM 1338
            M+ ++FD+++ E  G   P KL+L      +KNEKTGK  HF    I +A+W+ RA G GL IKL N   + +DGF E E EKV  +F++ F V++   E C KG+NWG   F+ + +E  +    +F++ L +V NA LNKNE+  +F  +DEA   + EMR  T  T    E     ++  V ++A+I++ +GD L   K++ CLQPRGRY++KLY  FIHL GK+YD+ VPK    R  +LPHPD RQIFF +Q++PPI HGQTRY+F+I LF+ +  I++++  +E  LQE +NG +++N+SG  YEVV +++K LYDQK+TVP  F +K    A+ CSYK + G LYPL++GF FVP+P +SIR DEI++V  SR +  QR+FDF++E  NG+THTF SI++ EY+   +F+ AK +
Sbjct:    1 MADIAFDHITQEVRGTVYPGKLRLKEDEFMYKNEKTGKVDHFSRSDIESAQWIVRATGLGLSIKLRNNSLHRYDGFGEIEAEKVGSFFKKYFDVEIVKRELCYKGYNWGDVDFDGDVLEFSVKNAMAFEVPLSNVANAVLNKNEIIFEFHLNDEAEICLSEMRLYTPGTEADREGKAPAIYSKVTQKADIIQVTGDFLAEFKQLQCLQPRGRYDVKLYPSFIHLHGKSYDFKVPKNTITRLMVLPHPDNRQIFFAVQLDPPIKHGQTRYHFVISLFDKDSHINLEMAATEDWLQEQFNGKLTRNISGPEYEVVARVFKVLYDQKVTVPGSFSAKGGGCAVACSYKASVGLLYPLERGFTFVPRPPISIRFDEIVAVQFSRGTGAQRSFDFEVETRNGLTHTFTSIERDEYHHLYDFVTAKKL 422
[Close]
BLAST of SSRP1 vs. TrEMBL
Match: A0A095C5Z7 (FACT complex subunit SSRP1 OS=Schistosoma haematobium OX=6185 GN=MS3_05752 PE=3 SV=1)

HSP 1 Score: 421.394 bits (1082), Expect = 3.429e-134
Identity = 193/422 (45.73%), Postives = 281/422 (66.59%), Query Frame = 1 
Query:   85 MSSLSFDNLSSEHLGYWSPIKLKLTPTTLHFKNEKTGKTGHFETKLINTAEWLYRARGYGLCIKLSNKKRYYFDGFAENEFEKVSKYFEENFRVKVKNVETCLKGWNWGQPRFEDEYMEILIDGMRSFDINLKDVNNASLNKNELTLQFQTSDEA-FSIYEMRFATVSTN---ENVMSEMFRNVVKEANILEASGDALVSLKEMHCLQPRGRYEIKLYSQFIHLRGKTYDYSVPKENFVRFYLLPHPDERQIFFVLQVNPPITHGQTRYYFIILLFNNEDEISIDLNCSEQMLQENYNGSISKNMSGLTYEVVTKLYKNLYDQKLTVPNKFESKLKARALTCSYKTTSGFLYPLDKGFIFVPKPAVSIRSDEIISVNLSRASLMQRTFDFDIEASNGITHTFNSIDKSEYNGFLEFIRAKNM 1338
            M+ ++FD+++ E  G   P KL+L      +KNEKTGK  HF    I +A+W+ RA G GL IKL N   + +DGF E E EKV  +F++ F V++   E C KG+NWG   F+ + +E  +    +F++ L +V NA LNKNE+  +F  +DEA   + EMR  T  T    E     ++  V ++A+I++ +GD LV  K++ CLQPRGRY++KLY  FIHL GK+YD+ VPK    R  +LPHPD RQIFF +Q++PPI HGQTRY+F+I LF+ +  I++++  +E  LQE +NG +++N+SG  YEVV +++K L+DQK+TVP  F +K    A+ CSYK + G LYPL++GF FVP+P +SIR DEI++V  SR +  QR+FDF++E  NG+THTF SI++ EY+   +F+ AK +
Sbjct:    1 MADIAFDHITQEVRGTVYPGKLRLKEDEFMYKNEKTGKVDHFSRSDIESAQWIVRATGLGLSIKLKNNSLHRYDGFGEIEAEKVGSFFKKYFDVEIVKRELCYKGYNWGDVDFDGDVLEFSVKNAMAFEVPLSNVANAVLNKNEIIFEFHLNDEAEVCLSEMRLYTPGTEADREGKAPSIYSKVTQKADIIQVTGDFLVEFKQLQCLQPRGRYDVKLYPSFIHLHGKSYDFKVPKNTITRLMVLPHPDNRQIFFAVQLDPPIKHGQTRYHFVISLFDKDSHINLEMAATEDWLQEQFNGKLTRNISGPEYEVVARVFKVLFDQKVTVPGSFSAKGGGCAVACSYKASVGLLYPLERGFTFVPRPPISIRFDEIVAVQFSRGTGAQRSFDFEVETRNGLTHTFTSIERDEYHHLYDFVTAKKL 422
[Close]
BLAST of SSRP1 vs. TrEMBL
Match: A0A4S2L4R3 (FACT complex subunit SSRP1 OS=Opisthorchis felineus OX=147828 GN=CRM22_009872 PE=3 SV=1)

HSP 1 Score: 424.861 bits (1091), Expect = 3.898e-134
Identity = 195/435 (44.83%), Postives = 290/435 (66.67%), Query Frame = 1 
Query:   46 YTFYSNFRNLHFRMSSLSFDNLSSEHLGYWSPIKLKLTPTTLHFKNEKTGKTGHFETKLINTAEWLYRARGYGLCIKLSNKKRYYFDGFAENEFEKVSKYFEENFRVKVKNVETCLKGWNWGQPRFEDEYMEILIDGMRSFDINLKDVNNASLNKNELTLQFQTSDEA-FSIYEMRFATVSTNENVMSE---MFRNVVKEANILEASGDALVSLKEMHCLQPRGRYEIKLYSQFIHLRGKTYDYSVPKENFVRFYLLPHPDERQIFFVLQVNPPITHGQTRYYFIILLFNNEDEISIDLNCSEQMLQENYNGSISKNMSGLTYEVVTKLYKNLYDQKLTVPNKFESKLKARALTCSYKTTSGFLYPLDKGFIFVPKPAVSIRSDEIISVNLSRASLMQRTFDFDIEASNGITHTFNSIDKSEYNGFLEFIRAKNM 1338
            Y F   F      M+ ++FDN++ E  G   P KL+L      FKNE+TGK  HF    +  A+W+ RA G GL IKL N   + +DGF E E EKV+K+F  +F +++   E C KG+NWG    + + +E+ +    SF+I L +++NA+LNKNE+  +F  +D+A   + EMR  T  T  +   +   ++  V ++A+I++ +GD LV  K++ CLQPRGRY+IKLY  FIHL GK++D+ VPK    R  +LPHPD RQ+FFVLQ++PPI HGQTRY+F+I+LF+ +  + +D+  SE+ LQE+++G +++N++G   EVV +++K L+DQK+TVP  F +K    A+ CSYK + G LYPL++GF FVP+P VSIR DEII+V  SR +  QR+FDF++E  NG+THTF SID++EY+   +F+ +K +
Sbjct:   74 YAFTPGF------MADIAFDNITQEVRGIVYPGKLRLRENDFMFKNEQTGKVDHFLRADLVAAQWIARATGLGLRIKLKNDSMHRYDGFGETEAEKVAKFFNTHFGIEISKRELCYKGFNWGDVEVDGDVLEMSVKNSMSFEIPLANLSNATLNKNEIVFEFHLNDDAEICLSEMRLYTPGTEADRDGKAPIIYSKVTEKADIIQVTGDFLVEFKQLQCLQPRGRYDIKLYPSFIHLHGKSFDFKVPKSTITRLLMLPHPDNRQVFFVLQLDPPIKHGQTRYHFVIMLFDKDSHVDLDMAASEEWLQEHFDGKLTQNIAGPECEVVARIFKVLFDQKVTVPGAFSAKNGGSAVACSYKASVGLLYPLERGFTFVPRPPVSIRFDEIITVQFSRGTGAQRSFDFEVETRNGLTHTFTSIDRNEYHQLYDFVTSKKL 502
[Close]
BLAST of SSRP1 vs. Ensembl Cavefish
Match: ssrp1b (structure specific recognition protein 1b [Source:ZFIN;Acc:ZDB-GENE-041008-209])

HSP 1 Score: 367.081 bits (941), Expect = 5.769e-117
Identity = 167/420 (39.76%), Postives = 268/420 (63.81%), Query Frame = 1 
Query:   94 LSFDNLSSEHLGYWSPIKLKLTPTTLHFKNEKTGKTGHFETKLINTAEWLYRARGYGLCIKLSNKKRYYFDGFAENEFEKVSKYFEENFRVKVKNVETCLKGWNWGQPRFEDEYMEILIDGMRSFDINLKDVNNASLNKNELTLQF-QTSDEAFSIYEMRF----ATVSTNENVMSEMFRNVVKEANILEASGDALVSLKEMHCLQPRGRYEIKLYSQFIHLRGKTYDYSVPKENFVRFYLLPHPDERQIFFVLQVNPPITHGQTRYYFIILLFNNEDEISIDLNCSEQMLQENYNGSISKNMSGLTYEVVTKLYKNLYDQKLTVPNKFESKLKARALTCSYKTTSGFLYPLDKGFIFVPKPAVSIRSDEIISVNLSRASLMQRTFDFDIEASNGITHTFNSIDKSEYNGFLEFIRAKNM 1338
            L F+++  E  G W+  +L+ +  T+ +KN KTGK        +  A+W     G+G+ +  S    Y +DGF + + EK+S+YF+ N++V++   + C+KGWNWG  +F    +   +     F+I L  V+  +  KNE+TL+F Q  D   S+ E+RF     T     + +    +NV+ +A++++A+GDA+   +E+ CL PRGRY+I++Y  F+HL GKT+DY +P    +R +LLPH D+RQ+FFV+ ++PPI  GQTRY+F+ILLF+ E++I++ LN SE  ++  + G ++KNMSG  YE+V+++ K L ++K+TVP  F+    A+ +TCSYK +SG LYPL++GFI+V KP V +R +EI  VN +R +   R+FDF+IE   G  +TF+SI++ EY    +F+ AK +
Sbjct:    5 LEFNDIYQEVKGSWNDGRLRFSKQTVVYKNSKTGKVDSIPVPELTQAQWRRVCLGHGIKLCTSTGHVYKYDGFKDTDLEKISEYFKANYKVELAEKDMCVKGWNWGTAKFNGPLLSFEVSDSPVFEIPLSSVSQCATGKNEVTLEFHQNDDTEVSLMEVRFYVPPTTADEGADPVEAFAQNVLSKADVIQATGDAVCIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKEEDINLTLNMSEDEVERRFEGKLNKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGFIYVHKPPVHLRFEEISCVNFARGTTTTRSFDFEIETKQGSQYTFSSIEREEYGKLFDFVNAKKL 424
[Close]
BLAST of SSRP1 vs. Ensembl Cavefish
Match: ssrp1b (structure specific recognition protein 1b [Source:ZFIN;Acc:ZDB-GENE-041008-209])

HSP 1 Score: 366.696 bits (940), Expect = 3.752e-116
Identity = 167/420 (39.76%), Postives = 268/420 (63.81%), Query Frame = 1 
Query:   94 LSFDNLSSEHLGYWSPIKLKLTPTTLHFKNEKTGKTGHFETKLINTAEWLYRARGYGLCIKLSNKKRYYFDGFAENEFEKVSKYFEENFRVKVKNVETCLKGWNWGQPRFEDEYMEILIDGMRSFDINLKDVNNASLNKNELTLQF-QTSDEAFSIYEMRF----ATVSTNENVMSEMFRNVVKEANILEASGDALVSLKEMHCLQPRGRYEIKLYSQFIHLRGKTYDYSVPKENFVRFYLLPHPDERQIFFVLQVNPPITHGQTRYYFIILLFNNEDEISIDLNCSEQMLQENYNGSISKNMSGLTYEVVTKLYKNLYDQKLTVPNKFESKLKARALTCSYKTTSGFLYPLDKGFIFVPKPAVSIRSDEIISVNLSRASLMQRTFDFDIEASNGITHTFNSIDKSEYNGFLEFIRAKNM 1338
            L F+++  E  G W+  +L+ +  T+ +KN KTGK        +  A+W     G+G+ +  S    Y +DGF + + EK+S+YF+ N++V++   + C+KGWNWG  +F    +   +     F+I L  V+  +  KNE+TL+F Q  D   S+ E+RF     T     + +    +NV+ +A++++A+GDA+   +E+ CL PRGRY+I++Y  F+HL GKT+DY +P    +R +LLPH D+RQ+FFV+ ++PPI  GQTRY+F+ILLF+ E++I++ LN SE  ++  + G ++KNMSG  YE+V+++ K L ++K+TVP  F+    A+ +TCSYK +SG LYPL++GFI+V KP V +R +EI  VN +R +   R+FDF+IE   G  +TF+SI++ EY    +F+ AK +
Sbjct:    5 LEFNDIYQEVKGSWNDGRLRFSKQTVVYKNSKTGKVDSIPVPELTQAQWRRVCLGHGIKLCTSTGHVYKYDGFKDTDLEKISEYFKANYKVELAEKDMCVKGWNWGTAKFNGPLLSFEVSDSPVFEIPLSSVSQCATGKNEVTLEFHQNDDTEVSLMEVRFYVPPTTADEGADPVEAFAQNVLSKADVIQATGDAVCIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKEEDINLTLNMSEDEVERRFEGKLNKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGFIYVHKPPVHLRFEEISCVNFARGTTTTRSFDFEIETKQGSQYTFSSIEREEYGKLFDFVNAKKL 424
[Close]
BLAST of SSRP1 vs. Ensembl Cavefish
Match: ssrp1b (structure specific recognition protein 1b [Source:ZFIN;Acc:ZDB-GENE-041008-209])

HSP 1 Score: 366.696 bits (940), Expect = 4.382e-116
Identity = 167/420 (39.76%), Postives = 268/420 (63.81%), Query Frame = 1 
Query:   94 LSFDNLSSEHLGYWSPIKLKLTPTTLHFKNEKTGKTGHFETKLINTAEWLYRARGYGLCIKLSNKKRYYFDGFAENEFEKVSKYFEENFRVKVKNVETCLKGWNWGQPRFEDEYMEILIDGMRSFDINLKDVNNASLNKNELTLQF-QTSDEAFSIYEMRF----ATVSTNENVMSEMFRNVVKEANILEASGDALVSLKEMHCLQPRGRYEIKLYSQFIHLRGKTYDYSVPKENFVRFYLLPHPDERQIFFVLQVNPPITHGQTRYYFIILLFNNEDEISIDLNCSEQMLQENYNGSISKNMSGLTYEVVTKLYKNLYDQKLTVPNKFESKLKARALTCSYKTTSGFLYPLDKGFIFVPKPAVSIRSDEIISVNLSRASLMQRTFDFDIEASNGITHTFNSIDKSEYNGFLEFIRAKNM 1338
            L F+++  E  G W+  +L+ +  T+ +KN KTGK        +  A+W     G+G+ +  S    Y +DGF + + EK+S+YF+ N++V++   + C+KGWNWG  +F    +   +     F+I L  V+  +  KNE+TL+F Q  D   S+ E+RF     T     + +    +NV+ +A++++A+GDA+   +E+ CL PRGRY+I++Y  F+HL GKT+DY +P    +R +LLPH D+RQ+FFV+ ++PPI  GQTRY+F+ILLF+ E++I++ LN SE  ++  + G ++KNMSG  YE+V+++ K L ++K+TVP  F+    A+ +TCSYK +SG LYPL++GFI+V KP V +R +EI  VN +R +   R+FDF+IE   G  +TF+SI++ EY    +F+ AK +
Sbjct:   19 LEFNDIYQEVKGSWNDGRLRFSKQTVVYKNSKTGKVDSIPVPELTQAQWRRVCLGHGIKLCTSTGHVYKYDGFKDTDLEKISEYFKANYKVELAEKDMCVKGWNWGTAKFNGPLLSFEVSDSPVFEIPLSSVSQCATGKNEVTLEFHQNDDTEVSLMEVRFYVPPTTADEGADPVEAFAQNVLSKADVIQATGDAVCIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKEEDINLTLNMSEDEVERRFEGKLNKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGFIYVHKPPVHLRFEEISCVNFARGTTTTRSFDFEIETKQGSQYTFSSIEREEYGKLFDFVNAKKL 438
[Close]
BLAST of SSRP1 vs. Ensembl Cavefish
Match: ssrp1a (FACT complex subunit SSRP1-like [Source:NCBI gene;Acc:103038710])

HSP 1 Score: 365.925 bits (938), Expect = 6.796e-116
Identity = 167/421 (39.67%), Postives = 276/421 (65.56%), Query Frame = 1 
Query:   91 SLSFDNLSSEHLGYWSPIKLKLTPTTLHFKNEKTGKTGHFETKLINTAEWLYRARGYGLCIKLSNKKRYYFDGFAENEFEKVSKYFEENFRVKVKNVETCLKGWNWGQPRFEDEYMEILIDGMRSFDINLKDVNNASLNKNELTLQFQTSDEA-FSIYEMRF---ATVSTNENVMSEMF-RNVVKEANILEASGDALVSLKEMHCLQPRGRYEIKLYSQFIHLRGKTYDYSVPKENFVRFYLLPHPDERQIFFVLQVNPPITHGQTRYYFIILLFNNEDEISIDLNCSEQMLQENYNGSISKNMSGLTYEVVTKLYKNLYDQKLTVPNKFESKLKARALTCSYKTTSGFLYPLDKGFIFVPKPAVSIRSDEIISVNLSRASLMQRTFDFDIEASNGITHTFNSIDKSEYNGFLEFIRAKNM 1338
            +L F ++  E  G W+  +L+ +  T+ +K+ KTGK        ++ A+W     G+G+ +  SN   Y +DGF + +FEK+S +F+ N++V++   + C+KGWNWG  +F    +   I+   +F+I L  V+  +  KNE+T++F  +D+A  S+ E+RF      + +     E+F +NV+  A++++A+GDA+   KE+ CL PRGRY+I++Y  F+HL GKT+DY +P    +R +LLPH D+RQ+FFV+ ++PPI  GQTRY+F+ILLF+ ++++++ LN SE+ ++  + G ++KNMSG  YE+V+++ K L ++K+TVP  F+    A+ +TCSYK +SG LYPL++GFI+V KP V +R +EI  VN +R +   R+FDF+IE   G  +TF+SI++ EY    +F+ AK +
Sbjct:    4 TLEFSDIFQEVKGCWNDGRLRFSKQTVVYKSNKTGKVDSIPVPDLSLAQWRRVCLGHGIKLATSNGHIYKYDGFKDTDFEKISAFFKANYKVELTEKDMCVKGWNWGTAKFSGPLLSFDINDSPAFEIPLASVSQCATGKNEVTVEFHQNDDAEVSLMEVRFYVPPNAADDGTDPVEVFSQNVLSRADVIQATGDAVCIFKELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDVNLTLNMSEEEVERRFEGKLNKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGFIYVHKPPVHLRFEEISCVNFARGTTTTRSFDFEIETKQGNQYTFSSIEREEYGKLFDFVNAKKL 424
[Close]
BLAST of SSRP1 vs. Ensembl Cavefish
Match: ssrp1a (FACT complex subunit SSRP1-like [Source:NCBI gene;Acc:103038710])

HSP 1 Score: 365.54 bits (937), Expect = 1.159e-115
Identity = 167/421 (39.67%), Postives = 276/421 (65.56%), Query Frame = 1 
Query:   91 SLSFDNLSSEHLGYWSPIKLKLTPTTLHFKNEKTGKTGHFETKLINTAEWLYRARGYGLCIKLSNKKRYYFDGFAENEFEKVSKYFEENFRVKVKNVETCLKGWNWGQPRFEDEYMEILIDGMRSFDINLKDVNNASLNKNELTLQFQTSDEA-FSIYEMRF---ATVSTNENVMSEMF-RNVVKEANILEASGDALVSLKEMHCLQPRGRYEIKLYSQFIHLRGKTYDYSVPKENFVRFYLLPHPDERQIFFVLQVNPPITHGQTRYYFIILLFNNEDEISIDLNCSEQMLQENYNGSISKNMSGLTYEVVTKLYKNLYDQKLTVPNKFESKLKARALTCSYKTTSGFLYPLDKGFIFVPKPAVSIRSDEIISVNLSRASLMQRTFDFDIEASNGITHTFNSIDKSEYNGFLEFIRAKNM 1338
            +L F ++  E  G W+  +L+ +  T+ +K+ KTGK        ++ A+W     G+G+ +  SN   Y +DGF + +FEK+S +F+ N++V++   + C+KGWNWG  +F    +   I+   +F+I L  V+  +  KNE+T++F  +D+A  S+ E+RF      + +     E+F +NV+  A++++A+GDA+   KE+ CL PRGRY+I++Y  F+HL GKT+DY +P    +R +LLPH D+RQ+FFV+ ++PPI  GQTRY+F+ILLF+ ++++++ LN SE+ ++  + G ++KNMSG  YE+V+++ K L ++K+TVP  F+    A+ +TCSYK +SG LYPL++GFI+V KP V +R +EI  VN +R +   R+FDF+IE   G  +TF+SI++ EY    +F+ AK +
Sbjct:    4 TLEFSDIFQEVKGCWNDGRLRFSKQTVVYKSNKTGKVDSIPVPDLSLAQWRRVCLGHGIKLATSNGHIYKYDGFKDTDFEKISAFFKANYKVELTEKDMCVKGWNWGTAKFSGPLLSFDINDSPAFEIPLASVSQCATGKNEVTVEFHQNDDAEVSLMEVRFYVPPNAADDGTDPVEVFSQNVLSRADVIQATGDAVCIFKELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDVNLTLNMSEEEVERRFEGKLNKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGFIYVHKPPVHLRFEEISCVNFARGTTTTRSFDFEIETKQGNQYTFSSIEREEYGKLFDFVNAKKL 424
[Close]
BLAST of SSRP1 vs. Ensembl Sea Lamprey
Match: hmgb2b (high mobility group box 2b [Source:ZFIN;Acc:ZDB-GENE-040912-122])

HSP 1 Score: 45.8246 bits (107), Expect = 9.869e-6
Identity = 21/66 (31.82%), Postives = 39/66 (59.09%), Query Frame = 3 
Query: 1809 LSAYILYSNDVRDEVKRSLPPGS-SIGDIAKVIGERWKTVTDAEKTKYANIYKIEHQKYLEAMKKY 2003
            +S+Y  +    R+E K+  P  S +  + +K   ERWKT+++ EKT++ ++ K++  +Y   MK Y
Sbjct:   13 MSSYAYFVQTCREEHKKKNPEASVNFAEFSKKCSERWKTMSEKEKTRFEDMAKVDKVRYDREMKTY 78
[Close]
BLAST of SSRP1 vs. Ensembl Yeast
Match: POB3 (Subunit of the heterodimeric FACT complex (Spt16p-Pob3p); FACT associates with chromatin via interaction with Nhp6Ap and Nhp6Bp, and reorganizes nucleosomes to facilitate access to DNA by RNA and DNA polymerases; protein abundance increases in response to DNA replication stress [Source:SGD;Acc:S000004534])

HSP 1 Score: 231.491 bits (589), Expect = 9.296e-68
Identity = 135/419 (32.22%), Postives = 215/419 (51.31%), Query Frame = 1 
Query:  223 INTAEWLYRARGYGLCIKLSNKKRYYFDGFAENEFEKVSKYFEENFRVKVKNVETCLKGWNWGQPRFEDEYMEILIDGMRSFDINLKDVNNASL-NKNELTLQFQTSDEAFS-----IYEMRF---ATVSTN---------------------------------ENVMSEMFRNVVKE-ANILEASGDALVSLKEMHCLQPRGRYEIKLYSQFIHLRGKTYDYSVPKENFVRFYLLPHPDERQIFFVLQVNPPITHGQTRYYFIILLFNNEDEISIDLNCSEQMLQENYNGSISKNMSGLTYEVVTKLYKNLYDQKLTVPNKFESKLKARALTCSYKTTSGFLYPLDKGFIFVPKPAVSIRSDEIISVNLSRA---SLMQRTFDFDIE-ASNGITHTFNSIDKSEYNGFLEFIRAKNM 1338
            ++T +W    RGY L I   N+     DGF+++++  +   F   F ++V+  E  L+GWNWG+       M   ++G  +F+I    +NN +L +KNE+ ++F   DE +      + EMRF     + TN                                 E  M+E F   +KE A+I E +GDA+VS +++    PRGRY+I +Y   I LRGKTY+Y +      R   LP  D+     VL + PP+  GQT Y F++L F  ++E  + LN  ++  +ENY   + K     T+ V++ + K L D+++ VP +++SK    A++CS+K   G+LYPLD  F F+ KP + I   ++  VN+SRA   S   RTFD ++   SN  + TF +I K E     +F+++KN+
Sbjct:   52 LSTVQWSRGCRGYDLKINTKNQGVIQLDGFSQDDYNLIKNDFHRRFNIQVEQREHSLRGWNWGKTDLARNEMVFALNGKPTFEIPYARINNTNLTSKNEVGIEFNIQDEEYQPAGDELVEMRFYIPGVIQTNVDENMTKKEESSNEVVPKKEDGAEGEDVQMAVEEKSMAEAFYEELKEKADIGEVAGDAIVSFQDVFFTTPRGRYDIDIYKNSIRLRGKTYEYKLQHRQIQRIVSLPKADDIHHLLVLAIEPPLRQGQTTYPFLVLQFQKDEETEVQLNLEDEDYEENYKDKLKKQYDAKTHIVLSHVLKGLTDRRVIVPGEYKSKYDQCAVSCSFKANEGYLYPLDNAFFFLTKPTLYIPFSDVSMVNISRAGQTSTSSRTFDLEVVLRSNRGSTTFANISKEEQQLLEQFLKSKNL 470
[Close]
BLAST of SSRP1 vs. Ensembl Yeast
Match: NHP6B (High-mobility group (HMG) protein; binds to and remodels nucleosomes; involved in recruiting FACT and other chromatin remodelling complexes to the chromosomes; functionally redundant with Nhp6Ap; required for transcriptional initiation fidelity of some tRNA genes; homologous to mammalian HMGB1 and HMGB2; NHP6B has a paralog, NHP6A, that arose from the whole genome duplication [Source:SGD;Acc:S000002157])

HSP 1 Score: 49.2914 bits (116), Expect = 6.480e-8
Identity = 22/58 (37.93%), Postives = 37/58 (63.79%), Query Frame = 3 
Query: 1809 LSAYILYSNDVRDEVKRSLPPGSSIGDIAKVIGERWKTVTDAEKTKYANIYKIEHQKY 1982
            LSAY+ ++N+ RD V RS  P  + G + +++GERWK +T  EK  Y +  + + ++Y
Sbjct:   31 LSAYMFFANENRDIV-RSENPDVTFGQVGRILGERWKALTAEEKQPYESKAQADKKRY 87
[Close]
BLAST of SSRP1 vs. Ensembl Yeast
Match: NHP6A (High-mobility group (HMG) protein; binds to and remodels nucleosomes; involved in recruiting FACT and other chromatin remodelling complexes to chromosomes; functionally redundant with Nhp6Bp; required for transcriptional initiation fidelity of some tRNA genes; homologous to mammalian HMGB1 and HMGB2; NHP6A has a paralog, NHP6B, that arose from the whole genome duplication; protein abundance increases in response to DNA replication stress [Source:SGD;Acc:S000006256])

HSP 1 Score: 44.2838 bits (103), Expect = 2.744e-6
Identity = 21/47 (44.68%), Postives = 30/47 (63.83%), Query Frame = 3 
Query: 1809 LSAYILYSNDVRDEVKRSLPPGSSIGDIAKVIGERWKTVTDAEKTKY 1949
            LSAY+ ++N+ RD V RS  P  + G + K +GE+WK +T  EK  Y
Sbjct:   25 LSAYMFFANENRDIV-RSENPDITFGQVGKKLGEKWKALTPEEKQPY 70
[Close]
BLAST of SSRP1 vs. Ensembl Nematostella
Match: EDO39306 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SAG6])

HSP 1 Score: 326.25 bits (835), Expect = 2.903e-104
Identity = 160/405 (39.51%), Postives = 251/405 (61.98%), Query Frame = 1 
Query:  145 KLKLTPTTLHFKNEKTGKTGHFETKLINTAEWLYRARGYGLCIKLSNKKRYYFDGFAENEFEKVSKYFEENFRVKVKNVETCLKGWNWGQPRFEDEYMEILIDGMRSFDINLKDVNNAS-LNKNELTLQFQTSDEA-FSIYEMRF--ATVSTNENVMSEMFRNVVKEANILEASGDALVSLKEMHCLQPRGRYEIKLYSQFIHLRGKTYDYSVPKENFVRFYLLPHPDERQIFFVLQVNPPITHGQTRYYFIILLFNNEDEISIDLNCSEQMLQENYNGSISKNMSGLTYEVVTKLYKNLYDQKLTVPNKFESKLKARALTCSYKTTSGFLYPLDKGFIFVPKPAVSIRSDEIISVNLSR---ASLMQRTFDFDIEASNGITHTFNSIDKSEYNGFLEFIRAKNM 1338
            +LKL  +   FK  KTG+   F    I +A WL  A G  L I L +  ++ FDGF E++F  +S++ +  F VK++ +E  +KGWNWG   F    +   +D   +F+I LKDV+ A+    NE+TL+F   D+A  ++ EMRF   T + + +       +V+ +A+I++ +GDA+V++ ++ CL PRGRY +K++  F+ L GKTYDY +P    +R +LLPH D   +FFV+ ++PPI  GQTRY F+I  F+ ++   + LN S++ ++E Y+G I K MSG  YE++++L K +  +K+TVP  F+S      +TCS++  SG LYPL++GFIF+ KP V +R DEI +VN +R   A    R+FDF+++  NG T  F+SI++ EY    +F+R K +
Sbjct:   15 RLKLHKSGAVFKASKTGRVDQFSKDDIESAHWLRVACGQELKIVLKSGLQFRFDGFKESDFANLSEFLKSFFGVKLEEMELSVKGWNWGTATFNGSALAFEVDKKPAFEIPLKDVSQATTAGNNEVTLEFHQHDDAEVALMEMRFYIPTPADSTDPNPTFHEHVLSKADIIQITGDAIVTIPDVACLTPRGRYTMKIFPTFVQLHGKTYDYKIPYTTILRIFLLPHKD--HMFFVVSMDPPIKQGQTRYPFLITRFDKDEHFDVKLNISKEEMKEKYDGKIEKEMSGAIYEIISRLMKAVVGKKITVPGTFKSHQGVSCITCSHRAGSGLLYPLERGFIFIHKPPVHVRFDEISAVNFARVAGAGGHSRSFDFELQTKNGTTIVFSSIEREEYGRLFDFVRDKKL 417
[Close]
BLAST of SSRP1 vs. Ensembl Nematostella
Match: EDO39305 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SAG5])

HSP 1 Score: 57.7658 bits (138), Expect = 6.780e-11
Identity = 30/65 (46.15%), Postives = 44/65 (67.69%), Query Frame = 3 
Query: 1809 LSAYILYSNDVRDEVKRSLPPGSSIGDIAKVIGERWKTVTDAEKTKYANIYKIEHQKYLEAMKKY 2003
            +SAY+L+ ND R E+K    PG S+ +++KV GE WK +TD  K+K+     IE QKY++ MK+Y
Sbjct:    5 MSAYMLWLNDTRQEIKDK-NPGISVTEVSKVAGEMWKNLTD--KSKWEEKAAIEKQKYVQRMKEY 66
[Close]
BLAST of SSRP1 vs. Ensembl Nematostella
Match: EDO49477 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RG66])

HSP 1 Score: 56.6102 bits (135), Expect = 1.736e-8
Identity = 30/68 (44.12%), Postives = 41/68 (60.29%), Query Frame = 3 
Query: 1809 LSAYILYSNDVRDEVKRSLPPGSSIGDIAKVIGERWKTVTDAEKTKYANIYKIEHQKYLEAMKKYEKS 2012
            L  Y+ YS  V D+VK   P    + DI K+IG+ W+ + DAEK +Y   Y+IE Q+Y EA+K Y  S
Sbjct:  101 LMPYMRYSRKVWDQVKNQNP-DFKLWDIGKIIGQMWRDLDDAEKQEYMEEYEIEKQEYNEAVKLYHSS 167
[Close]
BLAST of SSRP1 vs. Ensembl Nematostella
Match: EDO36028 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SJW6])

HSP 1 Score: 53.9138 bits (128), Expect = 2.240e-8
Identity = 31/79 (39.24%), Postives = 48/79 (60.76%), Query Frame = 3 
Query: 1809 LSAYILYSNDVRDEVKRSLPPGSSIGDIAKVIGERWKTVTDAEKTKYANIYKIEHQKYLEAMKKYEKSGIAPEKVTKSQ 2045
            LSAY  + N  RD+VK+   P +S G ++KV+GE W  +TD +KT+Y ++ K +  +Y   MK + K G  P K  K++
Sbjct:   97 LSAYFHFINLKRDDVKKD-NPNASGGALSKVLGEMWSKMTDDDKTQYQDMAKKDKVRYESEMKAF-KDGKLPAKQNKTK 173
[Close]
BLAST of SSRP1 vs. Ensembl Medaka
Match: ssrp1a (structure specific recognition protein 1 [Source:NCBI gene;Acc:101157064])

HSP 1 Score: 362.459 bits (929), Expect = 3.198e-115
Identity = 165/420 (39.29%), Postives = 271/420 (64.52%), Query Frame = 1 
Query:   94 LSFDNLSSEHLGYWSPIKLKLTPTTLHFKNEKTGKTGHFETKLINTAEWLYRARGYGLCIKLSNKKRYYFDGFAENEFEKVSKYFEENFRVKVKNVETCLKGWNWGQPRFEDEYMEILIDGMRSFDINLKDVNNASLNKNELTLQF-QTSDEAFSIYEMRF----ATVSTNENVMSEMFRNVVKEANILEASGDALVSLKEMHCLQPRGRYEIKLYSQFIHLRGKTYDYSVPKENFVRFYLLPHPDERQIFFVLQVNPPITHGQTRYYFIILLFNNEDEISIDLNCSEQMLQENYNGSISKNMSGLTYEVVTKLYKNLYDQKLTVPNKFESKLKARALTCSYKTTSGFLYPLDKGFIFVPKPAVSIRSDEIISVNLSRASLMQRTFDFDIEASNGITHTFNSIDKSEYNGFLEFIRAKNM 1338
            L F+ +  E  G W+  +L+ +   + +K+ KTGK        +N A+W     G+G+ +  S    Y +DGF + +FEK+S++F+ N+++++   + C+KGWNWG  +F    +   ++   +F+I L +V+  +  KNE+TL+F Q  D   S+ E+RF    +     +  +    +NV+ +A++++A+GDA+   KE+ CL PRGRY+I++Y  F+HL GKT+DY +P    +R +LLPH D+RQ+FFV+ ++PPI  GQTRY+F+ILLF+ E++I++ LN +E  ++  + G ++KNMSG  YEVV+++ K L ++K+TVP  F+    A+ +TCSYK +SG LYPL++GFI+V KP V +R +EI  VN +R +   R+FDF+IE   G  +TF+SI++ EY    +F+ AK +
Sbjct:    5 LEFNEIYQEVKGSWNDGRLRFSKQNVVYKSNKTGKVDSIPAGELNLAQWRRVCLGHGIKLGTSTGHVYKYDGFRDTDFEKLSEFFKANYKMELAEKDMCVKGWNWGTAKFSGPLLSFDVNDNTAFEIPLSNVSQCATGKNEVTLEFHQNDDTEVSLMEVRFYVPPSQADERQESVEAFAQNVLSKADVIQATGDAVCIFKELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKEEDINLTLNMNEDDVERRFEGKLNKNMSGSLYEVVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGFIYVHKPPVHLRFEEISCVNFARGTTTTRSFDFEIETKQGNQYTFSSIEREEYGKLFDFVNAKKL 424
[Close]
BLAST of SSRP1 vs. Ensembl Medaka
Match: ssrp1a (structure specific recognition protein 1 [Source:NCBI gene;Acc:101157064])

HSP 1 Score: 362.459 bits (929), Expect = 1.168e-114
Identity = 165/420 (39.29%), Postives = 271/420 (64.52%), Query Frame = 1 
Query:   94 LSFDNLSSEHLGYWSPIKLKLTPTTLHFKNEKTGKTGHFETKLINTAEWLYRARGYGLCIKLSNKKRYYFDGFAENEFEKVSKYFEENFRVKVKNVETCLKGWNWGQPRFEDEYMEILIDGMRSFDINLKDVNNASLNKNELTLQF-QTSDEAFSIYEMRF----ATVSTNENVMSEMFRNVVKEANILEASGDALVSLKEMHCLQPRGRYEIKLYSQFIHLRGKTYDYSVPKENFVRFYLLPHPDERQIFFVLQVNPPITHGQTRYYFIILLFNNEDEISIDLNCSEQMLQENYNGSISKNMSGLTYEVVTKLYKNLYDQKLTVPNKFESKLKARALTCSYKTTSGFLYPLDKGFIFVPKPAVSIRSDEIISVNLSRASLMQRTFDFDIEASNGITHTFNSIDKSEYNGFLEFIRAKNM 1338
            L F+ +  E  G W+  +L+ +   + +K+ KTGK        +N A+W     G+G+ +  S    Y +DGF + +FEK+S++F+ N+++++   + C+KGWNWG  +F    +   ++   +F+I L +V+  +  KNE+TL+F Q  D   S+ E+RF    +     +  +    +NV+ +A++++A+GDA+   KE+ CL PRGRY+I++Y  F+HL GKT+DY +P    +R +LLPH D+RQ+FFV+ ++PPI  GQTRY+F+ILLF+ E++I++ LN +E  ++  + G ++KNMSG  YEVV+++ K L ++K+TVP  F+    A+ +TCSYK +SG LYPL++GFI+V KP V +R +EI  VN +R +   R+FDF+IE   G  +TF+SI++ EY    +F+ AK +
Sbjct:    5 LEFNEIYQEVKGSWNDGRLRFSKQNVVYKSNKTGKVDSIPAGELNLAQWRRVCLGHGIKLGTSTGHVYKYDGFRDTDFEKLSEFFKANYKMELAEKDMCVKGWNWGTAKFSGPLLSFDVNDNTAFEIPLSNVSQCATGKNEVTLEFHQNDDTEVSLMEVRFYVPPSQADERQESVEAFAQNVLSKADVIQATGDAVCIFKELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKEEDINLTLNMNEDDVERRFEGKLNKNMSGSLYEVVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGFIYVHKPPVHLRFEEISCVNFARGTTTTRSFDFEIETKQGNQYTFSSIEREEYGKLFDFVNAKKL 424
[Close]
BLAST of SSRP1 vs. Ensembl Medaka
Match: SMARCE1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 [Source:NCBI gene;Acc:101167768])

HSP 1 Score: 51.9878 bits (123), Expect = 1.533e-6
Identity = 29/68 (42.65%), Postives = 39/68 (57.35%), Query Frame = 3 
Query: 1809 LSAYILYSNDVRDEVKRSLPPGSSIGDIAKVIGERWKTVTDAEKTKYANIYKIEHQKYLEAMKKYEKS 2012
            L  Y+ YS  V D+VK S  P   + +I K+IG  W+ +TD EK  Y N Y+ E  +Y E+MK Y  S
Sbjct:   70 LMPYMRYSRKVWDQVKAS-NPDLKLWEIGKIIGGMWRDLTDEEKQDYLNDYEAEKIEYNESMKAYHNS 136
[Close]
BLAST of SSRP1 vs. Planmine SMEST
Match: SMESG000049360.1 (SMESG000049360.1)

HSP 1 Score: 872.848 bits (2254), Expect = 0.000e+0
Identity = 415/416 (99.76%), Postives = 416/416 (100.00%), Query Frame = 1 
Query:   85 MSSLSFDNLSSEHLGYWSPIKLKLTPTTLHFKNEKTGKTGHFETKLINTAEWLYRARGYGLCIKLSNKKRYYFDGFAENEFEKVSKYFEENFRVKVKNVETCLKGWNWGQPRFEDEYMEILIDGMRSFDINLKDVNNASLNKNELTLQFQTSDEAFSIYEMRFATVSTNENVMSEMFRNVVKEANILEASGDALVSLKEMHCLQPRGRYEIKLYSQFIHLRGKTYDYSVPKENFVRFYLLPHPDERQIFFVLQVNPPITHGQTRYYFIILLFNNEDEISIDLNCSEQMLQENYNGSISKNMSGLTYEVVTKLYKNLYDQKLTVPNKFESKLKARALTCSYKTTSGFLYPLDKGFIFVPKPAVSIRSDEIISVNLSRASLMQRTFDFDIEASNGITHTFNSIDKSEYNGFLEFIRAK 1332
            MSSLSFDNLSSEHLGYWSPIKLKLTPTTLHFKNEKTGKTGHFETKLINTAEWLYRARGYGLCIKLSNKKRYYFDGFAENEFEKVSKYFEENFRVKVKNVETCLKGWNWGQPRFEDEYMEILIDGMRSFDINLKDVNNASLNKNELTLQFQTSDEAFSIYEMRFATVSTNENVMSEMFRNVVKEANILEASGDALVSLKEMHCLQPRGRYEIKLYSQFIHLRGKTYDYSVPKENFVRFYLLPHPDERQIFFVLQVNPPITHGQTRYYFIILLFNNEDEISIDLNCS+QMLQENYNGSISKNMSGLTYEVVTKLYKNLYDQKLTVPNKFESKLKARALTCSYKTTSGFLYPLDKGFIFVPKPAVSIRSDEIISVNLSRASLMQRTFDFDIEASNGITHTFNSIDKSEYNGFLEFIRAK
Sbjct:    1 MSSLSFDNLSSEHLGYWSPIKLKLTPTTLHFKNEKTGKTGHFETKLINTAEWLYRARGYGLCIKLSNKKRYYFDGFAENEFEKVSKYFEENFRVKVKNVETCLKGWNWGQPRFEDEYMEILIDGMRSFDINLKDVNNASLNKNELTLQFQTSDEAFSIYEMRFATVSTNENVMSEMFRNVVKEANILEASGDALVSLKEMHCLQPRGRYEIKLYSQFIHLRGKTYDYSVPKENFVRFYLLPHPDERQIFFVLQVNPPITHGQTRYYFIILLFNNEDEISIDLNCSDQMLQENYNGSISKNMSGLTYEVVTKLYKNLYDQKLTVPNKFESKLKARALTCSYKTTSGFLYPLDKGFIFVPKPAVSIRSDEIISVNLSRASLMQRTFDFDIEASNGITHTFNSIDKSEYNGFLEFIRAK 416

HSP 2 Score: 369.007 bits (946), Expect = 1.456e-117
Identity = 266/267 (99.63%), Postives = 267/267 (100.00%), Query Frame = 3 
Query: 1326 SKKYVLSNGESVTRQEDWSSSDGSHDGYLERMKEEGKRSRARDAKVIVQXXXXXXXXXXXFNPEEVGESDVAXXXXXXXXXXXXXXXXNAGDAPSKVATSEKSTDEKPAKTKESIKKQVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSAYILYSNDVRDEVKRSLPPGSSIGDIAKVIGERWKTVTDAEKTKYANIYKIEHQKYLEAMKKYEKSGIAPEKVTKSQPKGEILGKLSAGVFKSEEFVESSDTSD 2126
            +KKYVLSNGESVTRQEDWSSSDGSHDGYLERMKEEGKRSRARDAKVIVQDDDDDDEDDEDFNPEEVGESDVAEEYDSEVSPSSSSEDSNAGDAPSKVATSEKSTDEKPAKTKESIKKQVIKAKVDKVVEKKSDKKSDKKASAGDTGTKKKKKKDPNAPKKPLSAYILYSNDVRDEVKRSLPPGSSIGDIAKVIGERWKTVTDAEKTKYANIYKIEHQKYLEAMKKYEKSGIAPEKVTKSQPKGEILGKLSAGVFKSEEFVESSDTSD
Sbjct:  415 AKKYVLSNGESVTRQEDWSSSDGSHDGYLERMKEEGKRSRARDAKVIVQDDDDDDEDDEDFNPEEVGESDVAEEYDSEVSPSSSSEDSNAGDAPSKVATSEKSTDEKPAKTKESIKKQVIKAKVDKVVEKKSDKKSDKKASAGDTGTKKKKKKDPNAPKKPLSAYILYSNDVRDEVKRSLPPGSSIGDIAKVIGERWKTVTDAEKTKYANIYKIEHQKYLEAMKKYEKSGIAPEKVTKSQPKGEILGKLSAGVFKSEEFVESSDTSD 681
[Close]
BLAST of SSRP1 vs. Planmine SMEST
Match: SMESG000012070.1 (SMESG000012070.1)

HSP 1 Score: 54.299 bits (129), Expect = 4.807e-8
Identity = 30/65 (46.15%), Postives = 41/65 (63.08%), Query Frame = 3 
Query: 1809 LSAYILYSNDVRDEVKRSLPPGSSIGDIAKVIGERWKTVTDAEKTKYANIYKIEHQKYLEAMKKY 2003
            +SA+IL+SND R  VK S  P   IGD+AK +G+ WK  +  EK KY N+ K   +KY   M++Y
Sbjct:  108 MSAFILFSNDFRLSVKES-NPEFKIGDVAKELGKMWKDYS--EKDKYENMAKSAKEKYENEMREY 169
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BLAST of SSRP1 vs. Planmine SMEST
Match: SMESG000012065.1 (SMESG000012065.1)

HSP 1 Score: 54.299 bits (129), Expect = 4.807e-8
Identity = 30/65 (46.15%), Postives = 41/65 (63.08%), Query Frame = 3 
Query: 1809 LSAYILYSNDVRDEVKRSLPPGSSIGDIAKVIGERWKTVTDAEKTKYANIYKIEHQKYLEAMKKY 2003
            +SA+IL+SND R  VK S  P   IGD+AK +G+ WK  +  EK KY N+ K   +KY   M++Y
Sbjct:  108 MSAFILFSNDFRLSVKES-NPEFKIGDVAKELGKMWKDYS--EKDKYENMAKSAKEKYENEMREY 169
[Close]
BLAST of SSRP1 vs. Planmine SMEST
Match: SMESG000020771.1 (SMESG000020771.1)

HSP 1 Score: 51.9878 bits (123), Expect = 2.566e-7
Identity = 25/66 (37.88%), Postives = 43/66 (65.15%), Query Frame = 3 
Query: 1812 SAYILYSNDVRDEVKRSLPPGS-SIGDIAKVIGERWKTVTDAEKTKYANIYKIEHQKYLEAMKKYE 2006
            SAYI+Y+  VR+E K+  P G  +  +I+K+  E+WK ++D EK KY  + + + ++Y + M+ YE
Sbjct:   11 SAYIIYTQAVREEYKKKNPDGKVNFTEISKIASEKWKNISDKEKEKYNVLAQADKKRYTKEMEGYE 76
The following BLAST results are available for this feature:
BLAST of SSRP1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
SSRP16.136e-11741.43structure specific recognition protein 1 [Source:H... [more]
SSRP15.654e-4743.53structure specific recognition protein 1 [Source:H... [more]
SSRP11.057e-936.99structure specific recognition protein 1 [Source:H... [more]
SMARCE15.748e-743.08SWI/SNF related, matrix associated, actin dependen... [more]
SMARCE16.242e-743.08SWI/SNF related, matrix associated, actin dependen... [more]
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BLAST of SSRP1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 3
Match NameE-valueIdentityDescription
hmg-43.403e-7934.51FACT complex subunit SSRP1-A [Source:UniProtKB/Sw... [more]
hmg-43.403e-7934.51FACT complex subunit SSRP1-A [Source:UniProtKB/Sw... [more]
hmg-31.625e-7332.16FACT complex subunit ssrp1-B [Source:UniProtKB/Sw... [more]
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BLAST of SSRP1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Ssrp1.492e-9637.35gene:FBgn0010278 transcript:FBtr0072242[more]
HmgZ4.171e-639.13gene:FBgn0010228 transcript:FBtr0345488[more]
HmgZ4.171e-639.13gene:FBgn0010228 transcript:FBtr0071673[more]
HmgZ4.171e-639.13gene:FBgn0010228 transcript:FBtr0071674[more]
HmgZ4.171e-639.13gene:FBgn0010228 transcript:FBtr0342960[more]
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BLAST of SSRP1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ssrp1b4.724e-11740.14structure specific recognition protein 1b [Source:... [more]
ssrp1a1.135e-11638.95structure specific recognition protein 1a [Source:... [more]
ssrp1b3.928e-11540.14structure specific recognition protein 1b [Source:... [more]
ssrp1b4.540e-11540.14structure specific recognition protein 1b [Source:... [more]
ssrp1b8.171e-11540.14structure specific recognition protein 1b [Source:... [more]
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BLAST of SSRP1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rad521.507e-11440.30RAD52 homolog, DNA repair protein [Source:Xenbase;... [more]
rad524.157e-11440.30RAD52 homolog, DNA repair protein [Source:Xenbase;... [more]
rad527.197e-11439.52RAD52 homolog, DNA repair protein [Source:Xenbase;... [more]
rad521.265e-11339.52RAD52 homolog, DNA repair protein [Source:Xenbase;... [more]
rad524.319e-11240.30RAD52 homolog, DNA repair protein [Source:Xenbase;... [more]
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BLAST of SSRP1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 4
Match NameE-valueIdentityDescription
Ssrp13.981e-11841.43structure specific recognition protein 1 [Source:M... [more]
Ssrp15.946e-11741.43structure specific recognition protein 1 [Source:M... [more]
Ssrp15.946e-11741.43structure specific recognition protein 1 [Source:M... [more]
Smarce11.351e-642.65SWI/SNF related, matrix associated, actin dependen... [more]
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BLAST of SSRP1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q08945|SSRP1_HUMAN2.947e-11641.43FACT complex subunit SSRP1 OS=Homo sapiens OX=9606... [more]
sp|Q04678|SSRP1_CHICK3.058e-11641.43FACT complex subunit SSRP1 OS=Gallus gallus OX=903... [more]
sp|Q04931|SSRP1_RAT3.682e-11641.43FACT complex subunit SSRP1 OS=Rattus norvegicus OX... [more]
sp|Q08943|SSRP1_MOUSE4.159e-11641.43FACT complex subunit SSRP1 OS=Mus musculus OX=1009... [more]
sp|Q9W602|SSRP1_XENLA1.787e-11139.52FACT complex subunit SSRP1 OS=Xenopus laevis OX=83... [more]
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BLAST of SSRP1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
M9NLM95.236e-11499.76FACT complex subunit SSRP1 OS=Schmidtea mediterran... [more]
G4LWM11.045e-13445.50FACT complex subunit SSRP1 OS=Schistosoma mansoni ... [more]
A0A183QUA82.365e-13445.73FACT complex subunit SSRP1 OS=Schistosoma rodhaini... [more]
A0A095C5Z73.429e-13445.73FACT complex subunit SSRP1 OS=Schistosoma haematob... [more]
A0A4S2L4R33.898e-13444.83FACT complex subunit SSRP1 OS=Opisthorchis felineu... [more]
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BLAST of SSRP1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ssrp1b5.769e-11739.76structure specific recognition protein 1b [Source:... [more]
ssrp1b3.752e-11639.76structure specific recognition protein 1b [Source:... [more]
ssrp1b4.382e-11639.76structure specific recognition protein 1b [Source:... [more]
ssrp1a6.796e-11639.67FACT complex subunit SSRP1-like [Source:NCBI gene;... [more]
ssrp1a1.159e-11539.67FACT complex subunit SSRP1-like [Source:NCBI gene;... [more]
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BLAST of SSRP1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
hmgb2b9.869e-631.82high mobility group box 2b [Source:ZFIN;Acc:ZDB-GE... [more]
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BLAST of SSRP1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 3
Match NameE-valueIdentityDescription
POB39.296e-6832.22Subunit of the heterodimeric FACT complex (Spt16p-... [more]
NHP6B6.480e-837.93High-mobility group (HMG) protein; binds to and re... [more]
NHP6A2.744e-644.68High-mobility group (HMG) protein; binds to and re... [more]
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BLAST of SSRP1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 4
Match NameE-valueIdentityDescription
EDO393062.903e-10439.51Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO393056.780e-1146.15Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO494771.736e-844.12Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO360282.240e-839.24Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of SSRP1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 3
Match NameE-valueIdentityDescription
ssrp1a3.198e-11539.29structure specific recognition protein 1 [Source:N... [more]
ssrp1a1.168e-11439.29structure specific recognition protein 1 [Source:N... [more]
SMARCE11.533e-642.65SWI/SNF related, matrix associated, actin dependen... [more]
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BLAST of SSRP1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 4
Match NameE-valueIdentityDescription
SMESG000049360.11.456e-11799.76SMESG000049360.1[more]
SMESG000012070.14.807e-846.15SMESG000012070.1[more]
SMESG000012065.14.807e-846.15SMESG000012065.1[more]
SMESG000020771.12.566e-737.88SMESG000020771.1[more]
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Cross References
External references for this transcript
DatabaseAccession
SmedGD GBrowseSMED30009016
GenBankAFL48192.1
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30009016 ID=SMED30009016|Name=SSRP1|organism=Schmidtea mediterranea sexual|type=transcript|length=2197bp
ATTATATTTTAAACAAGACATTATTTAAGACTTTGTTTTAATAATTATAC
ATTTTATTCAAATTTTCGTAACTTACATTTTAGAATGAGTTCATTGTCAT
TTGACAATTTATCTTCTGAGCATTTGGGCTACTGGTCCCCAATAAAATTA
AAATTAACACCCACAACTTTACATTTCAAAAATGAAAAGACGGGCAAAAC
AGGTCATTTTGAAACCAAATTAATAAATACTGCTGAATGGCTGTATAGAG
CTAGGGGATATGGTTTATGTATCAAATTAAGTAATAAAAAACGATATTAT
TTTGATGGATTTGCTGAAAATGAATTTGAAAAAGTCTCAAAATACTTCGA
GGAAAACTTTCGTGTCAAAGTTAAAAACGTTGAGACATGTTTGAAGGGTT
GGAACTGGGGCCAGCCACGATTTGAAGATGAGTATATGGAAATTTTAATT
GACGGAATGAGAAGTTTTGATATTAATTTAAAAGATGTCAATAATGCTAG
TTTAAATAAAAATGAATTAACTCTTCAATTCCAAACATCAGATGAAGCAT
TTTCTATTTACGAAATGAGATTTGCGACTGTTAGTACAAATGAAAATGTA
ATGAGTGAAATGTTTCGCAATGTTGTTAAAGAAGCCAATATACTTGAAGC
TAGTGGTGACGCTCTTGTCTCTTTGAAAGAAATGCATTGTTTACAACCAA
GAGGACGTTATGAAATTAAATTATATTCTCAATTCATTCATTTGAGAGGA
AAAACATATGATTATAGTGTACCAAAAGAAAATTTTGTCAGATTTTATTT
GCTTCCTCACCCAGATGAACGTCAAATATTTTTCGTTTTACAAGTCAATC
CCCCAATCACTCATGGTCAAACTAGATATTATTTCATTATTCTCCTTTTC
AATAACGAAGATGAAATTAGTATTGACTTAAATTGCTCAGAGCAAATGCT
CCAGGAAAACTACAATGGAAGTATTAGCAAAAACATGAGTGGGCTTACTT
ATGAAGTTGTTACAAAATTATACAAAAATCTCTATGATCAGAAACTTACG
GTACCCAACAAATTCGAGAGTAAATTGAAGGCACGAGCCCTGACTTGCAG
CTACAAAACTACATCTGGATTTTTGTATCCCTTGGATAAGGGATTTATTT
TCGTACCGAAGCCCGCGGTATCCATTCGTAGTGATGAAATTATCAGTGTC
AATCTTTCTCGGGCATCTCTCATGCAAAGAACATTTGATTTTGATATTGA
AGCATCAAATGGAATCACTCATACGTTCAACTCAATCGATAAAAGTGAAT
ATAATGGATTTCTAGAGTTCATTAGAGCAAAAAATATGTTTTGAGTAATG
GAGAAAGCGTTACTCGACAAGAGGATTGGTCTTCTTCCGACGGGTCACAT
GACGGGTACTTAGAAAGGATGAAAGAAGAAGGCAAGCGAAGTAGAGCAAG
AGATGCTAAGGTTATTGTCCAAGATGATGATGATGACGATGAAGATGATG
AGGATTTCAATCCAGAAGAAGTCGGGGAGTCTGATGTGGCTGAAGAATAT
GATTCCGAAGTAAGTCCATCATCTTCGTCTGAAGACAGCAATGCCGGAGA
TGCTCCAAGCAAGGTTGCAACTAGTGAAAAATCAACCGATGAAAAACCTG
CTAAAACTAAAGAGTCCATTAAAAAACAAGTTATCAAGGCAAAGGTTGAT
AAGGTAGTTGAAAAGAAGTCAGATAAAAAATCCGACAAAAAAGCAAGCGC
TGGAGACACTGGAACAAAGAAAAAAAAGAAAAAGGACCCGAATGCTCCCA
AGAAGCCTTTATCTGCCTATATATTGTATTCAAATGATGTCCGAGATGAA
GTGAAGAGATCATTGCCTCCCGGGAGCTCTATTGGTGACATAGCGAAAGT
CATTGGTGAACGCTGGAAAACGGTAACAGATGCAGAGAAGACTAAATATG
CCAATATATACAAGATCGAGCATCAAAAATATTTGGAAGCTATGAAGAAA
TATGAAAAAAGTGGAATAGCTCCTGAGAAAGTAACCAAATCGCAGCCTAA
GGGTGAAATATTAGGAAAATTGAGTGCTGGTGTGTTTAAAAGCGAGGAAT
TTGTGGAATCATCCGATACTTCAGATTAATGTACAACATTGATAGATTTA
TTTAGATGTTTCTTTAAATGTTTAATTGTTATGTAATCTAAAAATGG
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protein sequence of SMED30009016-orf-1

>SMED30009016-orf-1 ID=SMED30009016-orf-1|Name=SMED30009016-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=420bp
MSSLSFDNLSSEHLGYWSPIKLKLTPTTLHFKNEKTGKTGHFETKLINTA
EWLYRARGYGLCIKLSNKKRYYFDGFAENEFEKVSKYFEENFRVKVKNVE
TCLKGWNWGQPRFEDEYMEILIDGMRSFDINLKDVNNASLNKNELTLQFQ
TSDEAFSIYEMRFATVSTNENVMSEMFRNVVKEANILEASGDALVSLKEM
HCLQPRGRYEIKLYSQFIHLRGKTYDYSVPKENFVRFYLLPHPDERQIFF
VLQVNPPITHGQTRYYFIILLFNNEDEISIDLNCSEQMLQENYNGSISKN
MSGLTYEVVTKLYKNLYDQKLTVPNKFESKLKARALTCSYKTTSGFLYPL
DKGFIFVPKPAVSIRSDEIISVNLSRASLMQRTFDFDIEASNGITHTFNS
IDKSEYNGFLEFIRAKNMF*
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protein sequence of SMED30009016-orf-2

>SMED30009016-orf-2 ID=SMED30009016-orf-2|Name=SMED30009016-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=237bp
MKEEGKRSRARDAKVIVQDDDDDDEDDEDFNPEEVGESDVAEEYDSEVSP
SSSSEDSNAGDAPSKVATSEKSTDEKPAKTKESIKKQVIKAKVDKVVEKK
SDKKSDKKASAGDTGTKKKKKKDPNAPKKPLSAYILYSNDVRDEVKRSLP
PGSSIGDIAKVIGERWKTVTDAEKTKYANIYKIEHQKYLEAMKKYEKSGI
APEKVTKSQPKGEILGKLSAGVFKSEEFVESSDTSD*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: cellular component
TermDefinition
GO:0005694chromosome
GO:0005634nucleus
Vocabulary: biological process
TermDefinition
GO:0006260DNA replication
GO:0006281DNA repair
GO:0006974cellular response to DNA damage stimulus
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000014zeta neoblast
PLANA:0000429neoblast
PLANA:0002109X1 cell
PLANA:0002142parenchyma
Vocabulary: INTERPRO
TermDefinition
IPR035417POB3_N
IPR038167SSRP1_sf
IPR009071HMG_box_dom
IPR000969SSrcognition
IPR013719DUF1747
IPR024954SSRP1_dom
IPR011993PH-like_dom_sf
Vocabulary: molecular function
TermDefinition
GO:0003677DNA binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000969Structure-specific recognition proteinPRINTSPR00887SSRCOGNITIONcoord: 204..220
score: 53.68
coord: 382..398
score: 43.38
coord: 249..265
score: 61.03
coord: 341..359
score: 56.58
coord: 314..327
score: 43.75
coord: 398..416
score: 37.5
coord: 226..242
score: 40.44
coord: 359..376
score: 49.31
IPR013719Domain of unknown function DUF1747SMARTSM01287Rtt106_2coord: 333..419
e-value: 2.9E-22
score: 90.0
IPR013719Domain of unknown function DUF1747PFAMPF08512Rtt106coord: 336..417
e-value: 2.1E-20
score: 72.9
NoneNo IPR availableGENE3DG3DSA:2.30.29.150coord: 184..323
e-value: 4.2E-48
score: 164.5
NoneNo IPR availablePANTHERPTHR45849:SF1FACT COMPLEX SUBUNIT SSRP1coord: 5..418
NoneNo IPR availablePANTHERPTHR45849FAMILY NOT NAMEDcoord: 5..418
NoneNo IPR availableCDDcd13231PH2_SSRP1-likecoord: 327..417
e-value: 1.85436E-31
score: 113.74
NoneNo IPR availableCDDcd13230PH1_SSRP1-likecoord: 189..324
e-value: 1.47561E-61
score: 193.515
NoneNo IPR availableSUPERFAMILYSSF50729PH domain-likecoord: 189..417
IPR035417FACT complex subunit POB3-like, N-terminal PH domainPFAMPF17292POB3_Ncoord: 5..98
e-value: 2.7E-18
score: 66.2
IPR038167SSRP1 domain superfamilyGENE3DG3DSA:2.30.29.220coord: 94..181
e-value: 2.2E-12
score: 48.6
IPR024954SSRP1 domainPFAMPF03531SSrecogcoord: 105..164
e-value: 4.4E-14
score: 52.1
IPR011993PH-like domain superfamilyGENE3DG3DSA:2.30.29.30coord: 324..420
e-value: 2.6E-28
score: 100.0
IPR011993PH-like domain superfamilyGENE3DG3DSA:2.30.29.30coord: 2..93
e-value: 2.4E-12
score: 48.8