SMED30008979

Overview
NameSMED30008979
Smed IDSMED30008979
Length (bp)343
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30008979 (SMED30008979) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30008979 (SMED30008979) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30008979 (SMED30008979) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30008979 (SMED30008979) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30008979

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 12

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30008979h1SMcG0000290 SmedASXL_004439SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X1 cellSMED30008979h1SMcG0000290 SmedASXL_019869SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X1 cellSMED30008979h1SMcG0000290 SmedASXL_003018SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X1 cellSMED30008979h1SMcG0000290 SmedASXL_001008SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
gutSMED30008979h1SMcG0000290 dd_Smed_v4_22938_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30008979h1SMcG0000290 dd_Smed_v4_22938_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
zeta neoblastSMED30008979h1SMcG0000290 dd_Smed_v4_39554_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
zeta neoblastSMED30008979h1SMcG0000290 dd_Smed_v4_12726_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
zeta neoblastSMED30008979h1SMcG0000290 dd_Smed_v4_35838_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
zeta neoblastSMED30008979h1SMcG0000290 dd_Smed_v4_22938_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
neoblastSMED30008979h1SMcG0000290 SMED_05003_V2_1GPL14150PMID:22385657
Wagner et al., 2012		whole organism asexual adult cDNA to DNA expression microarray evidence
neoblastSMED30008979h1SMcG0000290 SMED_05003_V2_1GPL14150_gene_modelsPMID:22385657
Wagner et al., 2012		whole organism asexual adult cDNA to DNA expression microarray evidence
Note: Hover over icons to view figure legend
Alignments
SMED30008979 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.001732:3685..4020 -1496
v31.001732:3826..4161 -1478
v31.001732:3544..3879 -1451
v31.001732:3400..3738 -1325
v31.001732:4108..4458 -835
v31.001732:3106..3597 +785
Homology
[Close]
BLAST of SMED30008979 vs. Planmine SMEST
Match: SMESG000065696.1 (SMESG000065696.1)

HSP 1 Score: 172.555 bits (436), Expect = 5.303e-51
Identity = 101/114 (88.60%), Postives = 104/114 (91.23%), Query Frame = -2 
Query:    1 QISPNQSISLIDKSVINNLLPNPKKSILKENQMVQDNLMTPSLNSELQISPNQSISLVNKSVINNNSLLPNPKKSILKENQMVQDNLMTPSLNSELQISPNQSISLVNKSVINN 342
            QISPNQ ISL++KSVINN LP  KKSILKENQMVQDNLMT SLNSE QISPNQSISLVNKSVINN+  LPN KKSILKENQMVQDNLMT SLNSELQISPNQSISLVNKSVINN
Sbjct: 1234 QISPNQLISLVNKSVINNSLPKRKKSILKENQMVQDNLMTSSLNSESQISPNQSISLVNKSVINNS--LPNRKKSILKENQMVQDNLMTSSLNSELQISPNQSISLVNKSVINN 1345

HSP 2 Score: 171.785 bits (434), Expect = 9.216e-51
Identity = 103/114 (90.35%), Postives = 105/114 (92.11%), Query Frame = -2 
Query:    1 QISPNQSISLIDKSVINNLLPNPKKSILKENQMVQDNLMTPSLNSELQISPNQSISLVNKSVINNNSLLPNPKKSILKENQMVQDNLMTPSLNSELQISPNQSISLVNKSVINN 342
            QISPNQSISL++KSVINN LPN KKSILKENQMVQDNLMT SLNSELQISPNQSISLVNKSVI NNSLL   KKSILKENQMVQDNLMT SLNSELQISPNQ ISLVNKSVINN
Sbjct: 1281 QISPNQSISLVNKSVINNSLPNRKKSILKENQMVQDNLMTSSLNSELQISPNQSISLVNKSVI-NNSLLKR-KKSILKENQMVQDNLMTSSLNSELQISPNQLISLVNKSVINN 1392

HSP 3 Score: 168.318 bits (425), Expect = 1.505e-49
Identity = 100/114 (87.72%), Postives = 103/114 (90.35%), Query Frame = -2 
Query:    1 QISPNQSISLIDKSVINNLLPNPKKSILKENQMVQDNLMTPSLNSELQISPNQSISLVNKSVINNNSLLPNPKKSILKENQMVQDNLMTPSLNSELQISPNQSISLVNKSVINN 342
            QISPNQSISL++KSVINN L   KKSILKENQMVQDNLMT SLNSELQISPNQ ISLVNKSVINN+  LPN KKSILKENQMVQDNLMT SLNSE QISPNQSISLVNKSVINN
Sbjct: 1328 QISPNQSISLVNKSVINNSLLKRKKSILKENQMVQDNLMTSSLNSELQISPNQLISLVNKSVINNS--LPNRKKSILKENQMVQDNLMTSSLNSESQISPNQSISLVNKSVINN 1439

HSP 4 Score: 166.392 bits (420), Expect = 7.100e-49
Identity = 101/114 (88.60%), Postives = 103/114 (90.35%), Query Frame = -2 
Query:    1 QISPNQSISLIDKSVINNLLPNPKKSILKENQMVQDNLMTPSLNSELQISPNQSISLVNKSVINNNSLLPNPKKSILKENQMVQDNLMTPSLNSELQISPNQSISLVNKSVINN 342
            QISPNQ ISL++KSVINN LPN KKSILKENQMVQDNLMT SLNSE QISPNQSISLVNKSVI NNSLL   KKSILKENQMVQDNLMT SLNSE QISPNQSISLVNKSVINN
Sbjct: 1375 QISPNQLISLVNKSVINNSLPNRKKSILKENQMVQDNLMTSSLNSESQISPNQSISLVNKSVI-NNSLLKR-KKSILKENQMVQDNLMTSSLNSESQISPNQSISLVNKSVINN 1486

HSP 5 Score: 152.14 bits (383), Expect = 7.892e-44
Identity = 92/104 (88.46%), Postives = 93/104 (89.42%), Query Frame = -2 
Query:    1 KSVINN--LLPNPKKSILKENQMVQDNLMTPSLNSELQISPNQSISLVNKSVINNNSLLPNPKKSILKENQMVQDNLMTPSLNSELQISPNQSISLVNKSVINN 306
            KSVINN  LLPN KKSILKENQMVQDNLMT SLNSELQISPNQ ISLVNKSVINN+  LP  KKSILKENQMVQDNLMT SLNSE QISPNQSISLVNKSVINN
Sbjct: 1197 KSVINNNSLLPNRKKSILKENQMVQDNLMTSSLNSELQISPNQLISLVNKSVINNS--LPKRKKSILKENQMVQDNLMTSSLNSESQISPNQSISLVNKSVINN 1298

HSP 6 Score: 150.984 bits (380), Expect = 2.250e-43
Identity = 91/114 (79.82%), Postives = 97/114 (85.09%), Query Frame = -2 
Query:    1 QISPNQSISLIDKSVINNLLPNPKKSILKENQMVQDNLMTPSLNSELQISPNQSISLVNKSVINNNSLLPNPKKSILKENQMVQDNLMTPSLNSELQISPNQSISLVNKSVINN 342
            QISPNQSISL++KSVINN L   KKSILKENQMVQDNLMT SLNSE QISPNQSISLVNKSVINN+  LPN KKSILKENQ VQDNLMT SLNSE QISPNQSI   +  +I+N
Sbjct: 1422 QISPNQSISLVNKSVINNSLLKRKKSILKENQMVQDNLMTSSLNSESQISPNQSISLVNKSVINNS--LPNRKKSILKENQTVQDNLMTSSLNSESQISPNQSIEPNHTQIIDN 1533
[Close]
BLAST of SMED30008979 vs. Planmine SMEST
Match: SMESG000065696.1 (SMESG000065696.1)

HSP 1 Score: 172.555 bits (436), Expect = 5.407e-51
Identity = 101/114 (88.60%), Postives = 104/114 (91.23%), Query Frame = -2 
Query:    1 QISPNQSISLIDKSVINNLLPNPKKSILKENQMVQDNLMTPSLNSELQISPNQSISLVNKSVINNNSLLPNPKKSILKENQMVQDNLMTPSLNSELQISPNQSISLVNKSVINN 342
            QISPNQ ISL++KSVINN LP  KKSILKENQMVQDNLMT SLNSE QISPNQSISLVNKSVINN+  LPN KKSILKENQMVQDNLMT SLNSELQISPNQSISLVNKSVINN
Sbjct: 1239 QISPNQLISLVNKSVINNSLPKRKKSILKENQMVQDNLMTSSLNSESQISPNQSISLVNKSVINNS--LPNRKKSILKENQMVQDNLMTSSLNSELQISPNQSISLVNKSVINN 1350

HSP 2 Score: 171.785 bits (434), Expect = 9.306e-51
Identity = 103/114 (90.35%), Postives = 105/114 (92.11%), Query Frame = -2 
Query:    1 QISPNQSISLIDKSVINNLLPNPKKSILKENQMVQDNLMTPSLNSELQISPNQSISLVNKSVINNNSLLPNPKKSILKENQMVQDNLMTPSLNSELQISPNQSISLVNKSVINN 342
            QISPNQSISL++KSVINN LPN KKSILKENQMVQDNLMT SLNSELQISPNQSISLVNKSVI NNSLL   KKSILKENQMVQDNLMT SLNSELQISPNQ ISLVNKSVINN
Sbjct: 1286 QISPNQSISLVNKSVINNSLPNRKKSILKENQMVQDNLMTSSLNSELQISPNQSISLVNKSVI-NNSLLKR-KKSILKENQMVQDNLMTSSLNSELQISPNQLISLVNKSVINN 1397

HSP 3 Score: 168.318 bits (425), Expect = 1.549e-49
Identity = 100/114 (87.72%), Postives = 103/114 (90.35%), Query Frame = -2 
Query:    1 QISPNQSISLIDKSVINNLLPNPKKSILKENQMVQDNLMTPSLNSELQISPNQSISLVNKSVINNNSLLPNPKKSILKENQMVQDNLMTPSLNSELQISPNQSISLVNKSVINN 342
            QISPNQSISL++KSVINN L   KKSILKENQMVQDNLMT SLNSELQISPNQ ISLVNKSVINN+  LPN KKSILKENQMVQDNLMT SLNSE QISPNQSISLVNKSVINN
Sbjct: 1333 QISPNQSISLVNKSVINNSLLKRKKSILKENQMVQDNLMTSSLNSELQISPNQLISLVNKSVINNS--LPNRKKSILKENQMVQDNLMTSSLNSESQISPNQSISLVNKSVINN 1444

HSP 4 Score: 166.392 bits (420), Expect = 7.169e-49
Identity = 101/114 (88.60%), Postives = 103/114 (90.35%), Query Frame = -2 
Query:    1 QISPNQSISLIDKSVINNLLPNPKKSILKENQMVQDNLMTPSLNSELQISPNQSISLVNKSVINNNSLLPNPKKSILKENQMVQDNLMTPSLNSELQISPNQSISLVNKSVINN 342
            QISPNQ ISL++KSVINN LPN KKSILKENQMVQDNLMT SLNSE QISPNQSISLVNKSVI NNSLL   KKSILKENQMVQDNLMT SLNSE QISPNQSISLVNKSVINN
Sbjct: 1380 QISPNQLISLVNKSVINNSLPNRKKSILKENQMVQDNLMTSSLNSESQISPNQSISLVNKSVI-NNSLLKR-KKSILKENQMVQDNLMTSSLNSESQISPNQSISLVNKSVINN 1491

HSP 5 Score: 152.14 bits (383), Expect = 8.047e-44
Identity = 92/104 (88.46%), Postives = 93/104 (89.42%), Query Frame = -2 
Query:    1 KSVINN--LLPNPKKSILKENQMVQDNLMTPSLNSELQISPNQSISLVNKSVINNNSLLPNPKKSILKENQMVQDNLMTPSLNSELQISPNQSISLVNKSVINN 306
            KSVINN  LLPN KKSILKENQMVQDNLMT SLNSELQISPNQ ISLVNKSVINN+  LP  KKSILKENQMVQDNLMT SLNSE QISPNQSISLVNKSVINN
Sbjct: 1202 KSVINNNSLLPNRKKSILKENQMVQDNLMTSSLNSELQISPNQLISLVNKSVINNS--LPKRKKSILKENQMVQDNLMTSSLNSESQISPNQSISLVNKSVINN 1303

HSP 6 Score: 150.984 bits (380), Expect = 2.250e-43
Identity = 91/114 (79.82%), Postives = 97/114 (85.09%), Query Frame = -2 
Query:    1 QISPNQSISLIDKSVINNLLPNPKKSILKENQMVQDNLMTPSLNSELQISPNQSISLVNKSVINNNSLLPNPKKSILKENQMVQDNLMTPSLNSELQISPNQSISLVNKSVINN 342
            QISPNQSISL++KSVINN L   KKSILKENQMVQDNLMT SLNSE QISPNQSISLVNKSVINN+  LPN KKSILKENQ VQDNLMT SLNSE QISPNQSI   +  +I+N
Sbjct: 1427 QISPNQSISLVNKSVINNSLLKRKKSILKENQMVQDNLMTSSLNSESQISPNQSISLVNKSVINNS--LPNRKKSILKENQTVQDNLMTSSLNSESQISPNQSIEPNHTQIIDN 1538
[Close]
BLAST of SMED30008979 vs. Planmine SMEST
Match: SMESG000065696.1 (SMESG000065696.1)

HSP 1 Score: 172.555 bits (436), Expect = 5.513e-51
Identity = 101/114 (88.60%), Postives = 104/114 (91.23%), Query Frame = -2 
Query:    1 QISPNQSISLIDKSVINNLLPNPKKSILKENQMVQDNLMTPSLNSELQISPNQSISLVNKSVINNNSLLPNPKKSILKENQMVQDNLMTPSLNSELQISPNQSISLVNKSVINN 342
            QISPNQ ISL++KSVINN LP  KKSILKENQMVQDNLMT SLNSE QISPNQSISLVNKSVINN+  LPN KKSILKENQMVQDNLMT SLNSELQISPNQSISLVNKSVINN
Sbjct: 1235 QISPNQLISLVNKSVINNSLPKRKKSILKENQMVQDNLMTSSLNSESQISPNQSISLVNKSVINNS--LPNRKKSILKENQMVQDNLMTSSLNSELQISPNQSISLVNKSVINN 1346

HSP 2 Score: 171.785 bits (434), Expect = 9.581e-51
Identity = 103/114 (90.35%), Postives = 105/114 (92.11%), Query Frame = -2 
Query:    1 QISPNQSISLIDKSVINNLLPNPKKSILKENQMVQDNLMTPSLNSELQISPNQSISLVNKSVINNNSLLPNPKKSILKENQMVQDNLMTPSLNSELQISPNQSISLVNKSVINN 342
            QISPNQSISL++KSVINN LPN KKSILKENQMVQDNLMT SLNSELQISPNQSISLVNKSVI NNSLL   KKSILKENQMVQDNLMT SLNSELQISPNQ ISLVNKSVINN
Sbjct: 1282 QISPNQSISLVNKSVINNSLPNRKKSILKENQMVQDNLMTSSLNSELQISPNQSISLVNKSVI-NNSLLKR-KKSILKENQMVQDNLMTSSLNSELQISPNQLISLVNKSVINN 1393

HSP 3 Score: 168.318 bits (425), Expect = 1.564e-49
Identity = 100/114 (87.72%), Postives = 103/114 (90.35%), Query Frame = -2 
Query:    1 QISPNQSISLIDKSVINNLLPNPKKSILKENQMVQDNLMTPSLNSELQISPNQSISLVNKSVINNNSLLPNPKKSILKENQMVQDNLMTPSLNSELQISPNQSISLVNKSVINN 342
            QISPNQSISL++KSVINN L   KKSILKENQMVQDNLMT SLNSELQISPNQ ISLVNKSVINN+  LPN KKSILKENQMVQDNLMT SLNSE QISPNQSISLVNKSVINN
Sbjct: 1329 QISPNQSISLVNKSVINNSLLKRKKSILKENQMVQDNLMTSSLNSELQISPNQLISLVNKSVINNS--LPNRKKSILKENQMVQDNLMTSSLNSESQISPNQSISLVNKSVINN 1440

HSP 4 Score: 166.392 bits (420), Expect = 7.381e-49
Identity = 101/114 (88.60%), Postives = 103/114 (90.35%), Query Frame = -2 
Query:    1 QISPNQSISLIDKSVINNLLPNPKKSILKENQMVQDNLMTPSLNSELQISPNQSISLVNKSVINNNSLLPNPKKSILKENQMVQDNLMTPSLNSELQISPNQSISLVNKSVINN 342
            QISPNQ ISL++KSVINN LPN KKSILKENQMVQDNLMT SLNSE QISPNQSISLVNKSVI NNSLL   KKSILKENQMVQDNLMT SLNSE QISPNQSISLVNKSVINN
Sbjct: 1376 QISPNQLISLVNKSVINNSLPNRKKSILKENQMVQDNLMTSSLNSESQISPNQSISLVNKSVI-NNSLLKR-KKSILKENQMVQDNLMTSSLNSESQISPNQSISLVNKSVINN 1487

HSP 5 Score: 152.14 bits (383), Expect = 8.205e-44
Identity = 92/104 (88.46%), Postives = 93/104 (89.42%), Query Frame = -2 
Query:    1 KSVINN--LLPNPKKSILKENQMVQDNLMTPSLNSELQISPNQSISLVNKSVINNNSLLPNPKKSILKENQMVQDNLMTPSLNSELQISPNQSISLVNKSVINN 306
            KSVINN  LLPN KKSILKENQMVQDNLMT SLNSELQISPNQ ISLVNKSVINN+  LP  KKSILKENQMVQDNLMT SLNSE QISPNQSISLVNKSVINN
Sbjct: 1198 KSVINNNSLLPNRKKSILKENQMVQDNLMTSSLNSELQISPNQLISLVNKSVINNS--LPKRKKSILKENQMVQDNLMTSSLNSESQISPNQSISLVNKSVINN 1299

HSP 6 Score: 150.984 bits (380), Expect = 2.294e-43
Identity = 91/114 (79.82%), Postives = 97/114 (85.09%), Query Frame = -2 
Query:    1 QISPNQSISLIDKSVINNLLPNPKKSILKENQMVQDNLMTPSLNSELQISPNQSISLVNKSVINNNSLLPNPKKSILKENQMVQDNLMTPSLNSELQISPNQSISLVNKSVINN 342
            QISPNQSISL++KSVINN L   KKSILKENQMVQDNLMT SLNSE QISPNQSISLVNKSVINN+  LPN KKSILKENQ VQDNLMT SLNSE QISPNQSI   +  +I+N
Sbjct: 1423 QISPNQSISLVNKSVINNSLLKRKKSILKENQMVQDNLMTSSLNSESQISPNQSISLVNKSVINNS--LPNRKKSILKENQTVQDNLMTSSLNSESQISPNQSIEPNHTQIIDN 1534
The following BLAST results are available for this feature:
BLAST of SMED30008979 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008979 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008979 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008979 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008979 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008979 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008979 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008979 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008979 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008979 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008979 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008979 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008979 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008979 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3
Match NameE-valueIdentityDescription
SMESG000065696.15.303e-5188.60SMESG000065696.1[more]
SMESG000065696.15.407e-5188.60SMESG000065696.1[more]
SMESG000065696.15.513e-5188.60SMESG000065696.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30008979 ID=SMED30008979|Name=SMED30008979|organism=Schmidtea mediterranea sexual|type=transcript|length=343bp
ATTATTGATTACAGATTTATTGACTAATGATATTGATTGATTTGGTGATA
TTTGCAATTCAGAATTCAGACTGGGCGTCATTAAATTATCTTGTACCATT
TGATTTTCTTTTAAAATCGATTTTTTTGGATTTGGCAATAATGAATTATT
ATTGATTACAGATTTATTGACTAATGATATTGATTGATTTGGTGATATTT
GCAATTCAGAATTCAGACTGGGCGTCATTAAATTATCTTGTACCATTTGA
TTTTCTTTTAAAATCGATTTTTTTGGATTTGGCAATAAATTATTGATTAC
AGATTTATCGATTAAGGAAATTGATTGATTCGGTGATATTTGA
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protein sequence of SMED30008979-orf-1

>SMED30008979-orf-1 ID=SMED30008979-orf-1|Name=SMED30008979-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=114bp
QISPNQSISLIDKSVINNLLPNPKKSILKENQMVQDNLMTPSLNSELQIS
PNQSISLVNKSVINNNSLLPNPKKSILKENQMVQDNLMTPSLNSELQISP
NQSISLVNKSVINN
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000014zeta neoblast