SMED30008961

Overview
NameSMED30008961
Smed IDSMED30008961
Length (bp)1177
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30008961 (SMED30008961) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30008961 (SMED30008961) in cells (dots) of each of the 12 neoblast clusters.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30008961

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30008961h1SMcG0009702 SmedASXL_017321SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30008961h1SMcG0009702 SmedASXL_017321SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30008961 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.001839:20113..22788 -5612
Homology
[Close]
BLAST of SMED30008961 vs. Ensembl Human
Match: CPSF1 (cleavage and polyadenylation specific factor 1 [Source:HGNC Symbol;Acc:HGNC:2324])

HSP 1 Score: 200.675 bits (509), Expect = 3.640e-56
Identity = 117/347 (33.72%), Postives = 193/347 (55.62%), Query Frame = -3 
Query:  153 ILDMQFLHGYYEPTLLILYEPIGTFVGQALTRKDTCCMITLSLNLQKRTNPIIWHLENLPYDCFKVAPVPRPIGGIVILSTNILIYLNQSQPSCGIALNGYAKILTNFPLRQTSVNHPLALDGCECRFLNSEQLLIINGTGELFVVTFLLESAMRTVIGAHIEKIFKTVIPKTVTMCSTNYVFVGSQICDSVLLHY------QPHDALGDVY------ITSNVTDYCIDANRSIKSI--DEESEMDSKLANEAKQIDVKRFDFRVTDTLKNIGPIGSLTVSENYGHANNDLNDTHHMRLANEMSFVEMVATTGRGEFGAVSLINFTVKPRLHSVFELSLDFYDMWWV 1151
            I+D+QFLHGYYEPTLLIL+EP  T+ G+   R+DTC ++ +SLN+ ++ +P+IW L +LP+DC +   VP+PIGG+V+ + N L+YLNQS P  G+ALN      T FPLR T     + LD  +  F++ ++++I    GE++V+T L+   MR+V   H +K   +V+  ++      Y+F+GS++ +S+LL Y       P  A+ +              D     + + KS+  DE  E++   +       +  + F V D++ NIGP  +  V E     + +  ++    L       E+V  +G G+ GA+S++  +++P++ + FEL    YDMW V
Sbjct:  203 IIDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLNITQKVHPVIWSLTSLPFDCTQALAVPKPIGGVVVFAVNSLLYLNQSVPPYGVALNSLTTGTTAFPLR-TQEGVRITLDCAQATFISYDKMVISLKGGEIYVLT-LITDGMRSVRAFHFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLKYTEKLQEPPASAVREAADKEEPPSKKKRVDATAGWSAAGKSVPQDEVDEIEVYGSEAQSGTQLATYSFEVCDSILNIGPCANAAVGEP-AFLSEEFQNSPEPDL-------EIVVCSGHGKNGALSVLQKSIRPQVVTTFELP-GCYDMWTV 538
[Close]
BLAST of SMED30008961 vs. Ensembl Human
Match: CPSF1 (cleavage and polyadenylation specific factor 1 [Source:HGNC Symbol;Acc:HGNC:2324])

HSP 1 Score: 200.675 bits (509), Expect = 3.640e-56
Identity = 117/347 (33.72%), Postives = 193/347 (55.62%), Query Frame = -3 
Query:  153 ILDMQFLHGYYEPTLLILYEPIGTFVGQALTRKDTCCMITLSLNLQKRTNPIIWHLENLPYDCFKVAPVPRPIGGIVILSTNILIYLNQSQPSCGIALNGYAKILTNFPLRQTSVNHPLALDGCECRFLNSEQLLIINGTGELFVVTFLLESAMRTVIGAHIEKIFKTVIPKTVTMCSTNYVFVGSQICDSVLLHY------QPHDALGDVY------ITSNVTDYCIDANRSIKSI--DEESEMDSKLANEAKQIDVKRFDFRVTDTLKNIGPIGSLTVSENYGHANNDLNDTHHMRLANEMSFVEMVATTGRGEFGAVSLINFTVKPRLHSVFELSLDFYDMWWV 1151
            I+D+QFLHGYYEPTLLIL+EP  T+ G+   R+DTC ++ +SLN+ ++ +P+IW L +LP+DC +   VP+PIGG+V+ + N L+YLNQS P  G+ALN      T FPLR T     + LD  +  F++ ++++I    GE++V+T L+   MR+V   H +K   +V+  ++      Y+F+GS++ +S+LL Y       P  A+ +              D     + + KS+  DE  E++   +       +  + F V D++ NIGP  +  V E     + +  ++    L       E+V  +G G+ GA+S++  +++P++ + FEL    YDMW V
Sbjct:  203 IIDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLNITQKVHPVIWSLTSLPFDCTQALAVPKPIGGVVVFAVNSLLYLNQSVPPYGVALNSLTTGTTAFPLR-TQEGVRITLDCAQATFISYDKMVISLKGGEIYVLT-LITDGMRSVRAFHFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLKYTEKLQEPPASAVREAADKEEPPSKKKRVDATAGWSAAGKSVPQDEVDEIEVYGSEAQSGTQLATYSFEVCDSILNIGPCANAAVGEP-AFLSEEFQNSPEPDL-------EIVVCSGHGKNGALSVLQKSIRPQVVTTFELP-GCYDMWTV 538
[Close]
BLAST of SMED30008961 vs. Ensembl Human
Match: CPSF1 (cleavage and polyadenylation specific factor 1 [Source:HGNC Symbol;Acc:HGNC:2324])

HSP 1 Score: 200.675 bits (509), Expect = 3.640e-56
Identity = 117/347 (33.72%), Postives = 193/347 (55.62%), Query Frame = -3 
Query:  153 ILDMQFLHGYYEPTLLILYEPIGTFVGQALTRKDTCCMITLSLNLQKRTNPIIWHLENLPYDCFKVAPVPRPIGGIVILSTNILIYLNQSQPSCGIALNGYAKILTNFPLRQTSVNHPLALDGCECRFLNSEQLLIINGTGELFVVTFLLESAMRTVIGAHIEKIFKTVIPKTVTMCSTNYVFVGSQICDSVLLHY------QPHDALGDVY------ITSNVTDYCIDANRSIKSI--DEESEMDSKLANEAKQIDVKRFDFRVTDTLKNIGPIGSLTVSENYGHANNDLNDTHHMRLANEMSFVEMVATTGRGEFGAVSLINFTVKPRLHSVFELSLDFYDMWWV 1151
            I+D+QFLHGYYEPTLLIL+EP  T+ G+   R+DTC ++ +SLN+ ++ +P+IW L +LP+DC +   VP+PIGG+V+ + N L+YLNQS P  G+ALN      T FPLR T     + LD  +  F++ ++++I    GE++V+T L+   MR+V   H +K   +V+  ++      Y+F+GS++ +S+LL Y       P  A+ +              D     + + KS+  DE  E++   +       +  + F V D++ NIGP  +  V E     + +  ++    L       E+V  +G G+ GA+S++  +++P++ + FEL    YDMW V
Sbjct:  203 IIDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLNITQKVHPVIWSLTSLPFDCTQALAVPKPIGGVVVFAVNSLLYLNQSVPPYGVALNSLTTGTTAFPLR-TQEGVRITLDCAQATFISYDKMVISLKGGEIYVLT-LITDGMRSVRAFHFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLKYTEKLQEPPASAVREAADKEEPPSKKKRVDATAGWSAAGKSVPQDEVDEIEVYGSEAQSGTQLATYSFEVCDSILNIGPCANAAVGEP-AFLSEEFQNSPEPDL-------EIVVCSGHGKNGALSVLQKSIRPQVVTTFELP-GCYDMWTV 538
[Close]
BLAST of SMED30008961 vs. Ensembl Human
Match: CPSF1 (cleavage and polyadenylation specific factor 1 [Source:HGNC Symbol;Acc:HGNC:2324])

HSP 1 Score: 200.675 bits (509), Expect = 3.640e-56
Identity = 117/347 (33.72%), Postives = 193/347 (55.62%), Query Frame = -3 
Query:  153 ILDMQFLHGYYEPTLLILYEPIGTFVGQALTRKDTCCMITLSLNLQKRTNPIIWHLENLPYDCFKVAPVPRPIGGIVILSTNILIYLNQSQPSCGIALNGYAKILTNFPLRQTSVNHPLALDGCECRFLNSEQLLIINGTGELFVVTFLLESAMRTVIGAHIEKIFKTVIPKTVTMCSTNYVFVGSQICDSVLLHY------QPHDALGDVY------ITSNVTDYCIDANRSIKSI--DEESEMDSKLANEAKQIDVKRFDFRVTDTLKNIGPIGSLTVSENYGHANNDLNDTHHMRLANEMSFVEMVATTGRGEFGAVSLINFTVKPRLHSVFELSLDFYDMWWV 1151
            I+D+QFLHGYYEPTLLIL+EP  T+ G+   R+DTC ++ +SLN+ ++ +P+IW L +LP+DC +   VP+PIGG+V+ + N L+YLNQS P  G+ALN      T FPLR T     + LD  +  F++ ++++I    GE++V+T L+   MR+V   H +K   +V+  ++      Y+F+GS++ +S+LL Y       P  A+ +              D     + + KS+  DE  E++   +       +  + F V D++ NIGP  +  V E     + +  ++    L       E+V  +G G+ GA+S++  +++P++ + FEL    YDMW V
Sbjct:  203 IIDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLNITQKVHPVIWSLTSLPFDCTQALAVPKPIGGVVVFAVNSLLYLNQSVPPYGVALNSLTTGTTAFPLR-TQEGVRITLDCAQATFISYDKMVISLKGGEIYVLT-LITDGMRSVRAFHFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLKYTEKLQEPPASAVREAADKEEPPSKKKRVDATAGWSAAGKSVPQDEVDEIEVYGSEAQSGTQLATYSFEVCDSILNIGPCANAAVGEP-AFLSEEFQNSPEPDL-------EIVVCSGHGKNGALSVLQKSIRPQVVTTFELP-GCYDMWTV 538
[Close]
BLAST of SMED30008961 vs. Ensembl Celegans
Match: cpsf-1 (Probable cleavage and polyadenylation specificity factor subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9N4C2])

HSP 1 Score: 183.726 bits (465), Expect = 7.918e-51
Identity = 105/327 (32.11%), Postives = 176/327 (53.82%), Query Frame = -3 
Query:  201 RVNYILDMQFLHGYYEPTLLILYEPIGTFVGQALTRKDTCCMITLSLNLQKRTNPIIWHLENLPYDCFKVAPVPRPIGGIVILSTNILIYLNQSQPSCGIALNGYAKILTNFPLRQTSVNH-PLALDGCECRFLNSEQLLIINGTGELFVVTFLLESAMRTVIGAHIEKIFKTVIPKTVTMCSTNYVFVGSQICDSVLLHYQPHDALGDVYITSNVTDYCIDANRSIKSIDEESEMDSKLANEAKQIDVKRFD----FRVTDTLKNIGPIGSLTVSE-NYGHANNDLNDTHHMRLANEMSFVEMVATTGRGEFGAVSLINFTVKPRL 1163
            R++ I DM FL GYYEPT+L LYEPI T  G+A  R DT C++ +S+N+  R   ++W   NLP DC ++ P+P+P+GG ++  +N ++YLNQ+ P CG+ LN      T FPL+   + H  + LD     ++   ++ + +  G+LF++  +  S   TV      K+++T I  ++T+C+  ++FVGS++ DS LL Y       D  +     D    A   I+  +++ E+      E +  D ++ D    FR  D L+N+GP+ S+ V   NY   +NDL D             ++V  +G G+ GA+ +   +++P +
Sbjct:  185 RLDNIADMVFLDGYYEPTILFLYEPIQTTPGRACVRYDTMCIMGVSVNIVDRQFAVVWQTANLPMDCSQLLPIPKPLGGALVFGSNTVVYLNQAVPPCGLVLNSCYDGFTKFPLK--DLKHLKMTLDCSTSVYMEDGRIAVGSRDGDLFLLRLMTSSGGGTVKSLEFSKVYETSIAYSLTVCAPGHLFVGSRLGDSQLLEYTLLKTTRDCAVKRLKIDNKDPAAAEIELDEDDMELYGGAIEEQQNDDDEQIDESLQFRELDRLRNVGPVKSMCVGRPNY--MSNDLVDAKRRD-----PVFDLVTASGHGKNGALCVHQRSLRPEI 502
[Close]
BLAST of SMED30008961 vs. Ensembl Celegans
Match: cpsf-1 (Probable cleavage and polyadenylation specificity factor subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9N4C2])

HSP 1 Score: 178.333 bits (451), Expect = 6.523e-49
Identity = 102/320 (31.87%), Postives = 171/320 (53.44%), Query Frame = -3 
Query:  201 MQFLHGYYEPTLLILYEPIGTFVGQALTRKDTCCMITLSLNLQKRTNPIIWHLENLPYDCFKVAPVPRPIGGIVILSTNILIYLNQSQPSCGIALNGYAKILTNFPLRQTSVNH-PLALDGCECRFLNSEQLLIINGTGELFVVTFLLESAMRTVIGAHIEKIFKTVIPKTVTMCSTNYVFVGSQICDSVLLHYQPHDALGDVYITSNVTDYCIDANRSIKSIDEESEMDSKLANEAKQIDVKRFD----FRVTDTLKNIGPIGSLTVSE-NYGHANNDLNDTHHMRLANEMSFVEMVATTGRGEFGAVSLINFTVKPRL 1142
            M FL GYYEPT+L LYEPI T  G+A  R DT C++ +S+N+  R   ++W   NLP DC ++ P+P+P+GG ++  +N ++YLNQ+ P CG+ LN      T FPL+   + H  + LD     ++   ++ + +  G+LF++  +  S   TV      K+++T I  ++T+C+  ++FVGS++ DS LL Y       D  +     D    A   I+  +++ E+      E +  D ++ D    FR  D L+N+GP+ S+ V   NY   +NDL D             ++V  +G G+ GA+ +   +++P +
Sbjct:    1 MVFLDGYYEPTILFLYEPIQTTPGRACVRYDTMCIMGVSVNIVDRQFAVVWQTANLPMDCSQLLPIPKPLGGALVFGSNTVVYLNQAVPPCGLVLNSCYDGFTKFPLK--DLKHLKMTLDCSTSVYMEDGRIAVGSRDGDLFLLRLMTSSGGGTVKSLEFSKVYETSIAYSLTVCAPGHLFVGSRLGDSQLLEYTLLKTTRDCAVKRLKIDNKDPAAAEIELDEDDMELYGGAIEEQQNDDDEQIDESLQFRELDRLRNVGPVKSMCVGRPNY--MSNDLVDAKRRD-----PVFDLVTASGHGKNGALCVHQRSLRPEI 311
[Close]
BLAST of SMED30008961 vs. Ensembl Fly
Match: Cpsf160 (gene:FBgn0024698 transcript:FBtr0089258)

HSP 1 Score: 206.453 bits (524), Expect = 1.446e-58
Identity = 124/363 (34.16%), Postives = 205/363 (56.47%), Query Frame = -3 
Query:  153 RVNYILDMQFLHGYYEPTLLILYEPIGTFVGQALTRKDTCCMITLSLNLQKRTNPIIWHLENLPYDCFKVAPVPRPIGGIVILSTNILIYLNQSQPSCGIALNGYAKILTNFPLR-QTSVNHPLALDGCECRFLNSEQLLIINGTGELFVVTFLLESAMRTVIGAHIEKIFKTVIPKTVTMCSTNYVFVGSQICDSVLLHYQPHDALGDVYI----------TSNVTD--------YCID-------ANRSIKSIDEESEMDSKLANEAKQIDVKRFDFRVTDTLKNIGPIGSLTVSENYGHANNDLNDTHHMRLANEMSFVEMVATTGRGEFGAVSLINFTVKPRLHSVFELSLDFYDMWWV 1163
            +++ +LD+QFLHGYYEPTLLILYEP+ T  G+   R DTC ++ +SLN+Q+R +PIIW + +LP+DC +V P+ +PIGG ++++ N +IYLNQS P  G++LN  A   T FPL+ Q  V   ++LD     F++ ++L+I   TG+L+V+T  ++S MRTV   H  K   +V+   + +  + Y+F+GS++ +S+LLH+   D    + +            N+ D        + +D         +S +  DEE E+    A +A  + +++F F V D+L N+ PI  +   E      + +    H     ++  +E+VA TG  + GA+S+    + P++ + FEL     D+W V
Sbjct:  210 KIDNVLDIQFLHGYYEPTLLILYEPVRTCPGRIKVRSDTCVLVAISLNIQQRVHPIIWTVNSLPFDCLQVYPIQKPIGGCLVMTVNAVIYLNQSVPPYGVSLNSSADNSTAFPLKPQDGVR--ISLDCANFAFIDVDKLVISLRTGDLYVLTLCVDS-MRTVRNFHFHKAAASVLTSCICVLHSEYIFLGSRLGNSLLLHFTEEDQSTVITLDEVEQQSEQQQRNLQDEDQNLEEIFDVDQLEMAPTQAKSRRIEDEELEVYGSGA-KASVLQLRKFIFEVCDSLMNVAPINYMCAGERVEFEEDGVTLRPHAESLQDLK-IELVAATGHSKNGALSVFVNCINPQIITSFELD-GCLDVWTV 566
[Close]
BLAST of SMED30008961 vs. Ensembl Fly
Match: Cpsf160 (gene:FBgn0024698 transcript:FBtr0089257)

HSP 1 Score: 146.362 bits (368), Expect = 7.080e-38
Identity = 108/363 (29.75%), Postives = 179/363 (49.31%), Query Frame = -3 
Query:  153 RVNYILDMQFLHGYYEPTLLILYEPIGTFVGQALTRKDTCCMITLSLNLQKRTNPIIWHLENLPYDCFKVAPVPRPIGGIVILSTNILIYLNQSQPSCGIALNGYAKILTNFPLR-QTSVNHPLALDGCECRFLNSEQLLIINGTGELFVVTFLLESAMRTVIGAHIEKIFKTVIPKTVTMCSTNYVFVGSQICDSVLLHYQPHDALGDVYI----------TSNVTD--------YCID-------ANRSIKSIDEESEMDSKLANEAKQIDVKRFDFRVTDTLKNIGPIGSLTVSENYGHANNDLNDTHHMRLANEMSFVEMVATTGRGEFGAVSLINFTVKPRLHSVFELSLDFYDMWWV 1163
            +++ +LD+QFLHGYYEPTLLILYEP+ T  G+                                    KV P+ +PIGG ++++ N +IYLNQS P  G++LN  A   T FPL+ Q  V   ++LD     F++ ++L+I   TG+L+V+T  ++S MRTV   H  K   +V+   + +  + Y+F+GS++ +S+LLH+   D    + +            N+ D        + +D         +S +  DEE E+    A +A  + +++F F V D+L N+ PI  +   E      + +    H     ++  +E+VA TG  + GA+S+    + P++ + FEL     D+W V
Sbjct:  210 KIDNVLDIQFLHGYYEPTLLILYEPVRTCPGR-----------------------------------IKVYPIQKPIGGCLVMTVNAVIYLNQSVPPYGVSLNSSADNSTAFPLKPQDGVR--ISLDCANFAFIDVDKLVISLRTGDLYVLTLCVDS-MRTVRNFHFHKAAASVLTSCICVLHSEYIFLGSRLGNSLLLHFTEEDQSTVITLDEVEQQSEQQQRNLQDEDQNLEEIFDVDQLEMAPTQAKSRRIEDEELEVYGSGA-KASVLQLRKFIFEVCDSLMNVAPINYMCAGERVEFEEDGVTLRPHAESLQDLK-IELVAATGHSKNGALSVFVNCINPQIITSFELD-GCLDVWTV 531
[Close]
BLAST of SMED30008961 vs. Ensembl Fly
Match: pic (gene:FBgn0260962 transcript:FBtr0082709)

HSP 1 Score: 55.4546 bits (132), Expect = 5.912e-8
Identity = 45/199 (22.61%), Postives = 94/199 (47.24%), Query Frame = -3 
Query:  567 ILDMQFLHGYYEPTLLILYEPIGTFVGQALTRKDTCCMITLSLNLQ-KRTNPIIWHLENLPYDCFKVAPVPRPIGGIVILSTNILIYLNQSQPSCGIALNGYAKILTNFPLRQTSVNHPLALDGCECRF-LNSEQLLIINGTGELFVVTFLLESAMR--TVIGAHIEKIFKTVIPKTVTMCSTNYVFVGSQICDSVLLH 1151
            + D++FLHG   PT++++++             D   + +  +NL+ K    I W  +N+  +   + PVP PIGG++++    ++Y + S        N +A  +     RQ+++N       C  R   N  + L+ N  G+L+++        +  TV    +E++ +  IP+ +T     ++++G++  DS L+ 
Sbjct:  164 VYDVEFLHGCLNPTVIVIHKD-----------SDGRHVKSHEINLRDKEFMKIAWKQDNVETEATMLIPVPSPIGGVIVIGRESIVYHDGS--------NYHA--VAPLTFRQSTIN-------CYARVSSNGLRYLLGNMDGQLYMLFLGTAETSKGVTVKDIKVEQLGEISIPECITYLDNGFLYIGARHGDSQLVR 334
[Close]
BLAST of SMED30008961 vs. Ensembl Zebrafish
Match: cpsf1 (cleavage and polyadenylation specific factor 1 [Source:ZFIN;Acc:ZDB-GENE-040709-2])

HSP 1 Score: 199.519 bits (506), Expect = 5.906e-56
Identity = 118/348 (33.91%), Postives = 191/348 (54.89%), Query Frame = -3 
Query:  153 ILDMQFLHGYYEPTLLILYEPIGTFVGQALTRKDTCCMITLSLNLQKRTNPIIWHLENLPYDCFKVAPVPRPIGGIVILSTNILIYLNQSQPSCGIALNGYAKILTNFPLR-QTSVNHPLALDGCECRFLNSEQLLIINGTGELFVVTFLLESAMRTVIGAHIEKIFKTVIPKTVTMCSTNYVFVGSQICDSVLLHYQP---HDALGDVYITSNVTDYCIDANRSIKSIDEESEMDSKLANEAKQIDV-----------KRFDFRVTDTLKNIGPIGSLTVSENYGHANNDLNDTHHMRLANEMSFVEMVATTGRGEFGAVSLINFTVKPRLHSVFELSLDFYDMWWV 1151
            I+DM+FLHGYYEPTLLIL+EP  T+ G+   R+DTC ++ +SLN+ ++ +P+IW L NLP+DC +V  VP+PIGG+V+ + N L+YLNQS P  G++LN      T FPLR Q  V   + LD  +  F+ S++++I    GE++V+T L+   MR+V   H +K   +V+   +      Y+F+GS++ +S+LL Y        + +              N+  K +D        L +E  +I+V             + F V D++ NIGP  S ++ E     + +          N    +E+V  +G G+ GA+S++  +++P++ + FEL    +DMW V
Sbjct:  203 IIDMKFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLNIMQKVHPVIWSLSNLPFDCNQVMAVPKPIGGVVVFAVNSLLYLNQSVPPFGVSLNSLTNGTTAFPLRPQEEVK--ITLDCSQASFITSDKMVISLKGGEIYVLT-LITDGMRSVRAFHFDKAAASVLTTCMMTMEPGYLFLGSRLGNSLLLRYTEKLQETPMEEGKENEEKEKQEEPPNKK-KRVDSNWAGKGNLPDELDEIEVYGSEAQSGTQLATYSFEVCDSILNIGPCASASMGEP-AFLSEEFQ-------TNPEPDLEVVVCSGYGKNGALSVLQKSIRPQVVTTFELP-GCHDMWTV 537
[Close]
BLAST of SMED30008961 vs. Ensembl Zebrafish
Match: cpsf1 (cleavage and polyadenylation specific factor 1 [Source:ZFIN;Acc:ZDB-GENE-040709-2])

HSP 1 Score: 194.126 bits (492), Expect = 3.750e-54
Identity = 117/352 (33.24%), Postives = 194/352 (55.11%), Query Frame = -3 
Query:  153 ILDMQFLHGYYEPTLLILYEPIGTFVGQALTRKDTCCMITLSLNLQKRTNPIIWHLENLPYDCFKVAPVPRPIGGIVILSTNILIYLNQSQPSCGIALNGYAKILTNFPLR-QTSVNHPLALDGCECRFLNSEQLLIINGTGELFVVTFLLESAMRTVIGAHIEKIFKTVIPKTVTMCSTNYVFVGSQICDSVLLHYQPHDALGDVYITSNVTDYC-------------IDANRS-----IKSIDEESEMDSKLANEAKQIDVKRFDFRVTDTLKNIGPIGSLTVSENYGHANNDLNDTHHMRLANEMSFVEMVATTGRGEFGAVSLINFTVKPRLHSVFELSLDFYDMWWV 1151
            I+DM+FLHGYYEPTLLIL+EP  T+ G+   R+DTC ++ +SLN+ ++ +P+IW L NLP+DC +V  VP+PIGG+V+ + N L+YLNQS P  G++LN      T FPLR Q  V   + LD  +  F+ S++++I    GE++V+T L+   MR+V   H +K   +V+   +      Y+F+GS++ +S+LL Y   + L +  +     +               +D+N +         DE  E++   +       +  + F V D++ NIGP  S ++ E     + +          N    +E+V  +G G+ GA+S++  +++P++ + FEL    +DMW V
Sbjct:  203 IIDMKFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLNIMQKVHPVIWSLSNLPFDCNQVMAVPKPIGGVVVFAVNSLLYLNQSVPPFGVSLNSLTNGTTAFPLRPQEEVK--ITLDCSQASFITSDKMVISLKGGEIYVLT-LITDGMRSVRAFHFDKAAASVLTTCMMTMEPGYLFLGSRLGNSLLLRYT--EKLQETPMEEGKENEEKEKQEEPPNKKKRVDSNWAGCPGKGNLPDELDEIEVYGSEAQSGTQLATYSFEVCDSILNIGPCASASMGEP-AFLSEEFQ-------TNPEPDLEVVVCSGYGKNGALSVLQKSIRPQVVTTFELP-GCHDMWTV 540
[Close]
BLAST of SMED30008961 vs. Ensembl Zebrafish
Match: ddb1 (damage-specific DNA binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1272])

HSP 1 Score: 55.4546 bits (132), Expect = 9.111e-8
Identity = 54/202 (26.73%), Postives = 88/202 (43.56%), Query Frame = -3 
Query:  570 ILDMQFLHGYYEPTLLILYE-PIGTFVGQALTRKDTCCMITLSLNL-QKRTNPIIWHLENLPYDCFKVAPVPRPIGGIVILSTNILIYLNQSQPSCGIALNGYAKILTNFP--LRQTSVNHPLALDGCECRF-LNSEQLLIINGTGELFVVTFLLESAMRTVI---GAHIEKIFKTVIPKTVTMCSTNYVFVGSQICDSVLL 1151
            ++D+QFL+G   PT+  +Y+ P G  V             T  ++L +K  N   W  EN+  +   V PVP P GG +I+    + Y N              K L   P  ++Q+++        C  R   N  + L+ +  G LF++    E  M   +     H+E + +T I + +T      VFVGS++ DS L+
Sbjct:  164 VIDVQFLYGCQAPTVCFIYQDPQGRHVK------------TYEVSLREKEFNKGPWKQENVEAEASMVIPVPEPFGGAIIIGQESITYHNGD------------KYLAVAPPIIKQSTIV-------CHNRVDPNGSRYLLGDMEGRLFMLLLEKEELMDGAVVLKDLHVELLGETSIAECLTYLDNGVVFVGSRLGDSQLV 334
[Close]
BLAST of SMED30008961 vs. Ensembl Mouse
Match: Cpsf1 (cleavage and polyadenylation specific factor 1 [Source:MGI Symbol;Acc:MGI:2679722])

HSP 1 Score: 197.593 bits (501), Expect = 2.614e-55
Identity = 115/346 (33.24%), Postives = 190/346 (54.91%), Query Frame = -3 
Query:  153 ILDMQFLHGYYEPTLLILYEPIGTFVGQALTRKDTCCMITLSLNLQKRTNPIIWHLENLPYDCFKVAPVPRPIGGIVILSTNILIYLNQSQPSCGIALNGYAKILTNFPLRQTSVNHPLALDGCECRFLNSEQLLIINGTGELFVVTFLLESAMRTVIGAHIEKIFKTVIPKTVTMCSTNYVFVGSQICDSVLLHYQP---HDALGDVYITSNVTDYCIDANRSIKSI----------DEESEMDSKLANEAKQIDVKRFDFRVTDTLKNIGPIGSLTVSENYGHANNDLNDTHHMRLANEMSFVEMVATTGRGEFGAVSLINFTVKPRLHSVFELSLDFYDMWWV 1151
            I+D+QFLHGYYEPTLLIL+EP  T+ G+   R+DTC ++ +SLN+ ++ +P+IW L +LP+DC +   VP+PIGG+VI + N L+YLNQS P  G+ALN      T FPLR T     + LD  +  F++ ++++I    GE++V+T L+   MR+V   H +K   +V+  ++      Y+F+GS++ +S+LL Y           V   ++  +      R   ++          DE  E++   +       +  + F V D++ NIGP  +  V E     + +  ++    L       E+V  +G G+ GA+S++  +++P++ + FEL    YDMW V
Sbjct:  203 IIDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLNITQKVHPVIWSLTSLPFDCTQALAVPKPIGGVVIFAVNSLLYLNQSVPPYGVALNSLTTGTTAFPLR-TQEGVRITLDCAQAAFISYDKMVISLKGGEIYVLT-LITDGMRSVRAFHFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLKYTEKLQEPPASSVREAADKEEPPSKKKRVEPAVGWTGGKTVPQDEVDEIEVYGSEAQSGTQLATYSFEVCDSMLNIGPCANAAVGEP-AFLSEEFQNSPEPDL-------EIVVCSGYGKNGALSVLQKSIRPQVVTTFELP-GCYDMWTV 537
[Close]
BLAST of SMED30008961 vs. Ensembl Mouse
Match: Cpsf1 (cleavage and polyadenylation specific factor 1 [Source:MGI Symbol;Acc:MGI:2679722])

HSP 1 Score: 197.593 bits (501), Expect = 2.880e-55
Identity = 115/346 (33.24%), Postives = 190/346 (54.91%), Query Frame = -3 
Query:  153 ILDMQFLHGYYEPTLLILYEPIGTFVGQALTRKDTCCMITLSLNLQKRTNPIIWHLENLPYDCFKVAPVPRPIGGIVILSTNILIYLNQSQPSCGIALNGYAKILTNFPLRQTSVNHPLALDGCECRFLNSEQLLIINGTGELFVVTFLLESAMRTVIGAHIEKIFKTVIPKTVTMCSTNYVFVGSQICDSVLLHYQP---HDALGDVYITSNVTDYCIDANRSIKSI----------DEESEMDSKLANEAKQIDVKRFDFRVTDTLKNIGPIGSLTVSENYGHANNDLNDTHHMRLANEMSFVEMVATTGRGEFGAVSLINFTVKPRLHSVFELSLDFYDMWWV 1151
            I+D+QFLHGYYEPTLLIL+EP  T+ G+   R+DTC ++ +SLN+ ++ +P+IW L +LP+DC +   VP+PIGG+VI + N L+YLNQS P  G+ALN      T FPLR T     + LD  +  F++ ++++I    GE++V+T L+   MR+V   H +K   +V+  ++      Y+F+GS++ +S+LL Y           V   ++  +      R   ++          DE  E++   +       +  + F V D++ NIGP  +  V E     + +  ++    L       E+V  +G G+ GA+S++  +++P++ + FEL    YDMW V
Sbjct:  203 IIDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLNITQKVHPVIWSLTSLPFDCTQALAVPKPIGGVVIFAVNSLLYLNQSVPPYGVALNSLTTGTTAFPLR-TQEGVRITLDCAQAAFISYDKMVISLKGGEIYVLT-LITDGMRSVRAFHFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLKYTEKLQEPPASSVREAADKEEPPSKKKRVEPAVGWTGGKTVPQDEVDEIEVYGSEAQSGTQLATYSFEVCDSMLNIGPCANAAVGEP-AFLSEEFQNSPEPDL-------EIVVCSGYGKNGALSVLQKSIRPQVVTTFELP-GCYDMWTV 537
[Close]
BLAST of SMED30008961 vs. Ensembl Mouse
Match: Ddb1 (damage specific DNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1202384])

HSP 1 Score: 53.9138 bits (128), Expect = 1.584e-7
Identity = 52/201 (25.87%), Postives = 87/201 (43.28%), Query Frame = -3 
Query:  570 YILDMQFLHGYYEPTLLILYEPI-GTFVGQALTRKDTCCMITLSLNL-QKRTNPIIWHLENLPYDCFKVAPVPRPIGGIVILSTNILIYLNQSQPSCGIALNGYAKILTNFPLRQTSVNHPLALDGCECRF-LNSEQLLIINGTGELFVVTFLLESAMR---TVIGAHIEKIFKTVIPKTVTMCSTNYVFVGSQICDSVLL 1154
            +++D++FL+G   PT+  +Y+P+ G F            + T  ++L +K  N   W  EN+  +   V  VP P GG +I+    + Y N  +         Y  I      + T V        C  R   N  + L+ +  G LF++    E  M    T+    +E + +T I + +T      VFVGS++ DS L+
Sbjct:  163 HVIDVKFLYGCQAPTICFVYQPLKGDFGSPKTDDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDK---------YLAIAPPIIKQSTIV--------CHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLGDSQLV 346
[Close]
BLAST of SMED30008961 vs. Ensembl Mouse
Match: Ddb1 (damage specific DNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1202384])

HSP 1 Score: 49.2914 bits (116), Expect = 7.943e-6
Identity = 52/201 (25.87%), Postives = 85/201 (42.29%), Query Frame = -3 
Query:  570 YILDMQFLHGYYEPTLLILYE-PIGTFVGQALTRKDTCCMITLSLNL-QKRTNPIIWHLENLPYDCFKVAPVPRPIGGIVILSTNILIYLNQSQPSCGIALNGYAKILTNFPLRQTSVNHPLALDGCECRF-LNSEQLLIINGTGELFVVTFLLESAMR---TVIGAHIEKIFKTVIPKTVTMCSTNYVFVGSQICDSVLL 1154
            +++D++FL+G   PT+  +Y+ P G  V             T  ++L +K  N   W  EN+  +   V  VP P GG +I+    + Y N  +         Y  I      + T V        C  R   N  + L+ +  G LF++    E  M    T+    +E + +T I + +T      VFVGS++ DS L+
Sbjct:  163 HVIDVKFLYGCQAPTICFVYQDPQGRHVK------------TYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDK---------YLAIAPPIIKQSTIV--------CHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLGDSQLV 334
[Close]
BLAST of SMED30008961 vs. UniProt/SwissProt
Match: sp|Q9V726|CPSF1_DROME (Cleavage and polyadenylation specificity factor subunit 1 OS=Drosophila melanogaster OX=7227 GN=Cpsf160 PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.450e-57
Identity = 124/363 (34.16%), Postives = 205/363 (56.47%), Query Frame = -3 
Query:  153 RVNYILDMQFLHGYYEPTLLILYEPIGTFVGQALTRKDTCCMITLSLNLQKRTNPIIWHLENLPYDCFKVAPVPRPIGGIVILSTNILIYLNQSQPSCGIALNGYAKILTNFPLR-QTSVNHPLALDGCECRFLNSEQLLIINGTGELFVVTFLLESAMRTVIGAHIEKIFKTVIPKTVTMCSTNYVFVGSQICDSVLLHYQPHDALGDVYI----------TSNVTD--------YCID-------ANRSIKSIDEESEMDSKLANEAKQIDVKRFDFRVTDTLKNIGPIGSLTVSENYGHANNDLNDTHHMRLANEMSFVEMVATTGRGEFGAVSLINFTVKPRLHSVFELSLDFYDMWWV 1163
            +++ +LD+QFLHGYYEPTLLILYEP+ T  G+   R DTC ++ +SLN+Q+R +PIIW + +LP+DC +V P+ +PIGG ++++ N +IYLNQS P  G++LN  A   T FPL+ Q  V   ++LD     F++ ++L+I   TG+L+V+T  ++S MRTV   H  K   +V+   + +  + Y+F+GS++ +S+LLH+   D    + +            N+ D        + +D         +S +  DEE E+    A +A  + +++F F V D+L N+ PI  +   E      + +    H     ++  +E+VA TG  + GA+S+    + P++ + FEL     D+W V
Sbjct:  210 KIDNVLDIQFLHGYYEPTLLILYEPVRTCPGRIKVRSDTCVLVAISLNIQQRVHPIIWTVNSLPFDCLQVYPIQKPIGGCLVMTVNAVIYLNQSVPPYGVSLNSSADNSTAFPLKPQDGVR--ISLDCANFAFIDVDKLVISLRTGDLYVLTLCVDS-MRTVRNFHFHKAAASVLTSCICVLHSEYIFLGSRLGNSLLLHFTEEDQSTVITLDEVEQQSEQQQRNLQDEDQNLEEIFDVDQLEMAPTQAKSRRIEDEELEVYGSGA-KASVLQLRKFIFEVCDSLMNVAPINYMCAGERVEFEEDGVTLRPHAESLQDLK-IELVAATGHSKNGALSVFVNCINPQIITSFELD-GCLDVWTV 566
[Close]
BLAST of SMED30008961 vs. UniProt/SwissProt
Match: sp|Q10570|CPSF1_HUMAN (Cleavage and polyadenylation specificity factor subunit 1 OS=Homo sapiens OX=9606 GN=CPSF1 PE=1 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 1.748e-55
Identity = 117/347 (33.72%), Postives = 193/347 (55.62%), Query Frame = -3 
Query:  153 ILDMQFLHGYYEPTLLILYEPIGTFVGQALTRKDTCCMITLSLNLQKRTNPIIWHLENLPYDCFKVAPVPRPIGGIVILSTNILIYLNQSQPSCGIALNGYAKILTNFPLRQTSVNHPLALDGCECRFLNSEQLLIINGTGELFVVTFLLESAMRTVIGAHIEKIFKTVIPKTVTMCSTNYVFVGSQICDSVLLHY------QPHDALGDVY------ITSNVTDYCIDANRSIKSI--DEESEMDSKLANEAKQIDVKRFDFRVTDTLKNIGPIGSLTVSENYGHANNDLNDTHHMRLANEMSFVEMVATTGRGEFGAVSLINFTVKPRLHSVFELSLDFYDMWWV 1151
            I+D+QFLHGYYEPTLLIL+EP  T+ G+   R+DTC ++ +SLN+ ++ +P+IW L +LP+DC +   VP+PIGG+V+ + N L+YLNQS P  G+ALN      T FPLR T     + LD  +  F++ ++++I    GE++V+T L+   MR+V   H +K   +V+  ++      Y+F+GS++ +S+LL Y       P  A+ +              D     + + KS+  DE  E++   +       +  + F V D++ NIGP  +  V E     + +  ++    L       E+V  +G G+ GA+S++  +++P++ + FEL    YDMW V
Sbjct:  203 IIDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLNITQKVHPVIWSLTSLPFDCTQALAVPKPIGGVVVFAVNSLLYLNQSVPPYGVALNSLTTGTTAFPLR-TQEGVRITLDCAQATFISYDKMVISLKGGEIYVLT-LITDGMRSVRAFHFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLKYTEKLQEPPASAVREAADKEEPPSKKKRVDATAGWSAAGKSVPQDEVDEIEVYGSEAQSGTQLATYSFEVCDSILNIGPCANAAVGEP-AFLSEEFQNSPEPDL-------EIVVCSGHGKNGALSVLQKSIRPQVVTTFELP-GCYDMWTV 538
[Close]
BLAST of SMED30008961 vs. UniProt/SwissProt
Match: sp|Q9EPU4|CPSF1_MOUSE (Cleavage and polyadenylation specificity factor subunit 1 OS=Mus musculus OX=10090 GN=Cpsf1 PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 1.828e-54
Identity = 115/346 (33.24%), Postives = 190/346 (54.91%), Query Frame = -3 
Query:  153 ILDMQFLHGYYEPTLLILYEPIGTFVGQALTRKDTCCMITLSLNLQKRTNPIIWHLENLPYDCFKVAPVPRPIGGIVILSTNILIYLNQSQPSCGIALNGYAKILTNFPLRQTSVNHPLALDGCECRFLNSEQLLIINGTGELFVVTFLLESAMRTVIGAHIEKIFKTVIPKTVTMCSTNYVFVGSQICDSVLLHYQP---HDALGDVYITSNVTDYCIDANRSIKSI----------DEESEMDSKLANEAKQIDVKRFDFRVTDTLKNIGPIGSLTVSENYGHANNDLNDTHHMRLANEMSFVEMVATTGRGEFGAVSLINFTVKPRLHSVFELSLDFYDMWWV 1151
            I+D+QFLHGYYEPTLLIL+EP  T+ G+   R+DTC ++ +SLN+ ++ +P+IW L +LP+DC +   VP+PIGG+VI + N L+YLNQS P  G+ALN      T FPLR T     + LD  +  F++ ++++I    GE++V+T L+   MR+V   H +K   +V+  ++      Y+F+GS++ +S+LL Y           V   ++  +      R   ++          DE  E++   +       +  + F V D++ NIGP  +  V E     + +  ++    L       E+V  +G G+ GA+S++  +++P++ + FEL    YDMW V
Sbjct:  203 IIDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLNITQKVHPVIWSLTSLPFDCTQALAVPKPIGGVVIFAVNSLLYLNQSVPPYGVALNSLTTGTTAFPLR-TQEGVRITLDCAQAAFISYDKMVISLKGGEIYVLT-LITDGMRSVRAFHFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLKYTEKLQEPPASSVREAADKEEPPSKKKRVEPAVGWTGGKTVPQDEVDEIEVYGSEAQSGTQLATYSFEVCDSMLNIGPCANAAVGEP-AFLSEEFQNSPEPDL-------EIVVCSGYGKNGALSVLQKSIRPQVVTTFELP-GCYDMWTV 537
[Close]
BLAST of SMED30008961 vs. UniProt/SwissProt
Match: sp|Q10569|CPSF1_BOVIN (Cleavage and polyadenylation specificity factor subunit 1 OS=Bos taurus OX=9913 GN=CPSF1 PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 2.530e-54
Identity = 117/346 (33.82%), Postives = 190/346 (54.91%), Query Frame = -3 
Query:  153 ILDMQFLHGYYEPTLLILYEPIGTFVGQALTRKDTCCMITLSLNLQKRTNPIIWHLENLPYDCFKVAPVPRPIGGIVILSTNILIYLNQSQPSCGIALNGYAKILTNFPLRQTSVNHPLALDGCECRFLNSEQLLIINGTGELFVVTFLLESAMRTVIGAHIEKIFKTVIPKTVTMCSTNYVFVGSQICDSVLLHYQPHDALGDVYITSNVTD--------YCIDAN---RSIKSI--DEESEMDSKLANEAKQIDVKRFDFRVTDTLKNIGPIGSLTVSENYGHANNDLNDTHHMRLANEMSFVEMVATTGRGEFGAVSLINFTVKPRLHSVFELSLDFYDMWWV 1151
            I+D+QFLHGYYEPTLLIL+EP  T+ G+   R+DTC ++ +SLN+ ++ +P+IW L +LP+DC +   VP+PIGG+VI + N L+YLNQS P  G+ALN      T FPLR T     + LD  +  F++ ++++I    GE++V+T L+   MR+V   H +K   +V+  ++      Y+F+GS++ +S+LL Y                D          +DA       KS+  DE  E++   +       +  + F V D++ NIGP  +  + E     + +  ++    L       E+V  +G G+ GA+S++  +++P++ + FEL    YDMW V
Sbjct:  206 IVDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLNITQKVHPVIWSLTSLPFDCTQALAVPKPIGGVVIFAVNSLLYLNQSVPPYGVALNSLTTGTTAFPLR-TQEGVRITLDCAQAAFISYDKMVISLKGGEIYVLT-LITDGMRSVRAFHFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLKYTEKLQEPPASTAREAADKEEPPSKKKRVDATTGWSGSKSVPQDEVDEIEVYGSEAQSGTQLATYSFEVCDSILNIGPCANAAMGEP-AFLSEEFQNSPEPDL-------EIVVCSGYGKNGALSVLQKSIRPQVVTTFELP-GCYDMWTV 540
[Close]
BLAST of SMED30008961 vs. UniProt/SwissProt
Match: sp|Q9N4C2|CPSF1_CAEEL (Probable cleavage and polyadenylation specificity factor subunit 1 OS=Caenorhabditis elegans OX=6239 GN=cpsf-1 PE=3 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 1.007e-49
Identity = 105/327 (32.11%), Postives = 176/327 (53.82%), Query Frame = -3 
Query:  201 RVNYILDMQFLHGYYEPTLLILYEPIGTFVGQALTRKDTCCMITLSLNLQKRTNPIIWHLENLPYDCFKVAPVPRPIGGIVILSTNILIYLNQSQPSCGIALNGYAKILTNFPLRQTSVNH-PLALDGCECRFLNSEQLLIINGTGELFVVTFLLESAMRTVIGAHIEKIFKTVIPKTVTMCSTNYVFVGSQICDSVLLHYQPHDALGDVYITSNVTDYCIDANRSIKSIDEESEMDSKLANEAKQIDVKRFD----FRVTDTLKNIGPIGSLTVSE-NYGHANNDLNDTHHMRLANEMSFVEMVATTGRGEFGAVSLINFTVKPRL 1163
            R++ I DM FL GYYEPT+L LYEPI T  G+A  R DT C++ +S+N+  R   ++W   NLP DC ++ P+P+P+GG ++  +N ++YLNQ+ P CG+ LN      T FPL+   + H  + LD     ++   ++ + +  G+LF++  +  S   TV      K+++T I  ++T+C+  ++FVGS++ DS LL Y       D  +     D    A   I+  +++ E+      E +  D ++ D    FR  D L+N+GP+ S+ V   NY   +NDL D             ++V  +G G+ GA+ +   +++P +
Sbjct:  185 RLDNIADMVFLDGYYEPTILFLYEPIQTTPGRACVRYDTMCIMGVSVNIVDRQFAVVWQTANLPMDCSQLLPIPKPLGGALVFGSNTVVYLNQAVPPCGLVLNSCYDGFTKFPLK--DLKHLKMTLDCSTSVYMEDGRIAVGSRDGDLFLLRLMTSSGGGTVKSLEFSKVYETSIAYSLTVCAPGHLFVGSRLGDSQLLEYTLLKTTRDCAVKRLKIDNKDPAAAEIELDEDDMELYGGAIEEQQNDDDEQIDESLQFRELDRLRNVGPVKSMCVGRPNY--MSNDLVDAKRRD-----PVFDLVTASGHGKNGALCVHQRSLRPEI 502
[Close]
BLAST of SMED30008961 vs. TrEMBL
Match: A0A4Z2DNI1 (Cleavage and polyadenylation specificity factor subunit 1 OS=Schistosoma japonicum OX=6182 GN=EWB00_010660 PE=4 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 1.835e-69
Identity = 150/424 (35.38%), Postives = 217/424 (51.18%), Query Frame = -3 
Query:  129 GVRVNYILDMQFLHGYYEPTLLILYEPIGTFVGQALTRKDTCCMITLSLNLQKRTNPIIWHLENLPYDCFKVAPVPRPIGGIVILSTNILIYLNQSQPSCGIALNGYAKILTNFPLRQTSVN-HPLALDGCECRFLNSEQLLIINGTGELFVVTFLLESAMRTVIGAHIEKIFKTVIPKTVTMCSTNYVFVGSQICDSVLLHY--------------------QPHDALGDVYITSN---VTDYCIDANRSIKSIDEESEMD-------SKLANEAK-----------------QIDVK-----------------RFDFRVTDTLKNIGPIGSLTVSE--NYGHANNDLNDTHHMRLANEMSFVEMVATTGR----------GEFGAVSLINFTVKPRLHSVFELSLDFYDMWWVEGASVETA 1169
            G ++N +LDMQFLHG+YEPTLL+LYEPIGT+ G+   R+DTCC++ LS NLQKRTNP+IW  E+LP+DC  V PVP+PIGG+VI++ N ++YL Q+ PSC + LN YA+I TNFP+RQ   +  PL++DGC    LN  Q LI   +G L++++  LE A +TV      K+   V P  + +  + Y+F+GS+ CDSVL+                      QP     + Y T N   V +   +       I++E E D       S L N  K                 ++DV+                  + F+V D L N+GP+G LT  E       N D  D        EM  VE++A   R             G ++L++ +++PR  + FEL  ++  +W + G  + TA
Sbjct:  104 GEKINNVLDMQFLHGFYEPTLLVLYEPIGTWAGRVSARRDTCCIVALSFNLQKRTNPVIWFQESLPFDCRSVIPVPQPIGGVVIMAANSILYLKQTLPSCSLPLNCYAQISTNFPMRQDVPSCGPLSIDGCRVVTLNETQFLIGTRSGNLYLLSLWLEQATQTVTSLLFHKVGHAVPPHCMVLLESKYLFIGSRFCDSVLMKINHSLLCVDASGKEVDYQLLNQPSGINKNSYPTENKSSVEEERDEIPNKFPRIEDEKENDNAITTPKSLLQNSDKNALDEIDTMISTHYKFDKVDVELYGESILNPPSNYREIVNYSFQVVDRLINLGPMGQLTSGEVPCLAPGNTDPTDEALTCAQTEMHHVELLACIPRLFNVPTEKNPVSGGGIALLHTSIRPRGLTAFELP-EYMSLWSLYGPPIMTA 526
[Close]
BLAST of SMED30008961 vs. TrEMBL
Match: A0A4E0RDS1 (Cleavage and polyadenylation specificity factor subunit 1 OS=Fasciola hepatica OX=6192 GN=D915_002257 PE=4 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 2.827e-69
Identity = 147/405 (36.30%), Postives = 212/405 (52.35%), Query Frame = -3 
Query:  138 GVRVNYILDMQFLHGYYEPTLLILYEPIGTFVGQALTRKDTCCMITLSLNLQKRTNPIIWHLENLPYDCFKVAPVPRPIGGIVILSTNILIYLNQSQPSCGIALNGYAKILTNFPLRQTSVN-HPLALDGCECRFLNSEQLLIINGTGELFVVTFLLESAMRTVIGAHIEKIFKTVIPKTVTMCSTNYVFVGSQICDSVLLHY---------------------QPHDALG----------------DVYITSNVTDYCIDANRSIKSIDEESEMDSKLANEA------KQIDVKRFDFRVTDTLKNIGPIGSLTVSE--NYGHANNDLNDTHHMRLANEMSFVEMVATTGRG---------------EFGAVSLINFTVKPRLHSVFELSLDFYDMWWVEGASV 1169
            G ++N ++DMQFLHG+YEPTLL+LYEPIGT+ G+   R+DTCC++ LS NLQKRTNP+IW  E+LPYDC  V  VP+PIGG+VIL+TN +IYL Q+ PSCG+ LN YA++ T+FP+RQ   +  P+ LDG     L+  Q LI    G+L +++  +E A +TV    + +I   V P  + +  +N +FVGS++CDSVLL +                     QPH  +                 D    S + D   D+ + I+   E  E+D +L  +A      K   +  +   V D L N GP+G LT  E       N D  D   M    EM  +E++A   R                  G V L++ +V+ R  + FELS ++  +W + G  +
Sbjct:  211 GEKINNVIDMQFLHGFYEPTLLVLYEPIGTWAGRVSARRDTCCIVALSFNLQKRTNPVIWFQESLPYDCCCVHSVPQPIGGVVILATNSIIYLKQTLPSCGLPLNCYARLTTDFPMRQEVPSCGPITLDGSRAVALSDSQFLISTRMGKLCLLSLWVERATQTVSSLLLHEIGSAVPPHCMVLVGSNNLFVGSRLCDSVLLRFELTQMTVDTQGQMVVEDLLETQPHIPIADDPDNNAETQNQSETNDGPKESMMDDSAEDSKKPIQEFYEFDEVDVELYGDAILNPPSKYRKLDSYRLTVIDRLSNFGPMGMLTSGEVPCLAPGNTDPTDEALMAAQAEMQHIELMACIPRSFNLSTSDTDVEDDELRSGGVLLLHTSVRSRGLTAFELS-EYMSLWSLYGPPI 614
[Close]
BLAST of SMED30008961 vs. TrEMBL
Match: A0A075AAA2 (Reverse transcriptase domain-containing protein OS=Opisthorchis viverrini OX=6198 GN=T265_01349 PE=4 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 3.382e-69
Identity = 147/405 (36.30%), Postives = 212/405 (52.35%), Query Frame = -3 
Query:  138 GVRVNYILDMQFLHGYYEPTLLILYEPIGTFVGQALTRKDTCCMITLSLNLQKRTNPIIWHLENLPYDCFKVAPVPRPIGGIVILSTNILIYLNQSQPSCGIALNGYAKILTNFPLRQTSVN-HPLALDGCECRFLNSEQLLIINGTGELFVVTFLLESAMRTVIGAHIEKIFKTVIPKTVTMCSTNYVFVGSQICDSVLLHYQPH----DALGDV-----------------YITSNVTDYCIDANRSIKSIDE--ESEMDSKLANEA-------KQIDVK-----------------RFDFRVTDTLKNIGPIGSLTVSE--NYGHANNDLNDTHHMRLANEMSFVEMVATTGRG-----------EFGAVSLINFTVKPRLHSVFELSLDFYDMWWVEGASV 1169
            G ++N +LDMQFL+G+YEPTLL+LYEPIGT+ G+   R+DTCC++ LS NLQKRTNP+IW  E+LPYDC  V  VP PIGG++IL+TN +IY+ Q+ PSCG+ LN YA++ TNFP+RQ      PL LDGC    +   Q LI+  TG++ +++  +E   +TV    + +I  +V P +V +    YVFVGS++CDSVLLH        + LG +                  I  +     +D N   + + E   SE  +K +           ++DV+                  + F V D L N GP+G LT  E       N D  D   +    EM  VE++A   R              G V L++ +V+PR  + FEL  ++  +W + G  +
Sbjct:  389 GEKINNVLDMQFLNGFYEPTLLVLYEPIGTWAGRVSARRDTCCIVALSFNLQKRTNPVIWFQESLPYDCTYVHSVPEPIGGVLILATNSIIYMKQTLPSCGLPLNCYAQVTTNFPMRQDVPQCGPLTLDGCRIVTMTDSQFLIVTRTGKMCLLSLWVEHTTQTVSSLLLHEIGCSVPPYSVALLDKGYVFVGSRLCDSVLLHLTASTMFVNTLGRIVDLDETTTADNRTTDIPMIERDTESIPVDKNNPAEKVAENASSETPTKPSGSIVHGPYVFDEVDVELYGDTILNPPSDVRELNTYKFEVADRLVNFGPMGLLTSGEVPCLAPGNTDPTDEALIAAQAEMHHVELLACIPRSFEDVKDFTKDLRAGGVMLLHTSVRPRGLTAFELP-EYMSLWSLYGPPI 792
[Close]
BLAST of SMED30008961 vs. TrEMBL
Match: H2KV89 (Cleavage and polyadenylation specificity factor subunit 1 OS=Clonorchis sinensis OX=79923 GN=CLF_111560 PE=4 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.004e-68
Identity = 145/405 (35.80%), Postives = 209/405 (51.60%), Query Frame = -3 
Query:  138 GVRVNYILDMQFLHGYYEPTLLILYEPIGTFVGQALTRKDTCCMITLSLNLQKRTNPIIWHLENLPYDCFKVAPVPRPIGGIVILSTNILIYLNQSQPSCGIALNGYAKILTNFPLRQTSVN-HPLALDGCECRFLNSEQLLIINGTGELFVVTFLLESAMRTVIGAHIEKIFKTVIPKTVTMCSTNYVFVGSQICDSVLLHYQPH----DALGDV-----------------YITSNVTDYCIDANRSIKS--------------------------IDEESEMDSKLANEAKQIDVKRFDFRVTDTLKNIGPIGSLTVSE--NYGHANNDLNDTHHMRLANEMSFVEMVATTGRG-----------EFGAVSLINFTVKPRLHSVFELSLDFYDMWWVEGASV 1169
            G ++N +LDMQFL+G+YEPTLL+LYEPIGT+ G+   R+DTCC++ LS NLQKRTNP+IW  E+LPYDC  V  VP PIGG++IL+TN +IY+ Q+ PSCG+ LN YA++ TNFP+RQ      PL LDGC    +   Q LI+  TG++ +++  +E   +TV    + +I  +V P +V +    YVFVGS++CDSVLLH        + LG +                  I  +     +D N   +                           +D E   D+ L   +   ++  + F V D L N GP+G LT  E       N D  D   +    EM  VE++A   R              G V L++ +V+PR  + FEL  ++  +W + G  +
Sbjct:  152 GEKINNVLDMQFLNGFYEPTLLVLYEPIGTWAGRVSARRDTCCIVALSFNLQKRTNPVIWFQESLPYDCTYVHSVPEPIGGVLILATNSIIYMKQTLPSCGLPLNCYAQVTTNFPMRQDVPQCGPLTLDGCRIVTMTDSQFLIVTRTGKMCLLSLWVEHTTQTVSSLLLHEIGCSVPPYSVALLDKGYVFVGSRLCDSVLLHLTASTMFVNTLGRIVDLDETTTADNFRTDIPMIERDAESIPVDKNNPTEKEAENVSSGTPSKPSGSIVHGPYVFDEVDVELYGDTILNPPSDVRELNTYKFEVADRLVNFGPMGLLTSGEVPYLAPGNTDPTDEALIAAQAEMHHVELLACIPRSFEDVRDFTKDLRAGGVMLLHTSVRPRGLTAFELP-EYMSLWSLYGPPI 555
[Close]
BLAST of SMED30008961 vs. TrEMBL
Match: A0A5J4NP06 (Cleavage and polyadenylation specificity factor subunit 1 OS=Paragonimus westermani OX=34504 GN=DEA37_0000479 PE=4 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.400e-68
Identity = 141/405 (34.81%), Postives = 209/405 (51.60%), Query Frame = -3 
Query:  132 GVRVNYILDMQFLHGYYEPTLLILYEPIGTFVGQALTRKDTCCMITLSLNLQKRTNPIIWHLENLPYDCFKVAPVPRPIGGIVILSTNILIYLNQSQPSCGIALNGYAKILTNFPLRQTSVN-HPLALDGCECRFLNSEQLLIINGTGELFVVTFLLESAMRTVIGAHIEKIFKTVIPKTVTMCSTNYVFVGSQICDSVLLHY----------------------QPH-------------------DALG----DVYITSNVTDYCIDANRSIKSIDEESEMDSKLANEAKQIDVKRFDFRVTDTLKNIGPIGSLTVSE--NYGHANNDLNDTHHMRLANEMSFVEMVATTGRG-----------EFGAVSLINFTVKPRLHSVFELSLDFYDMWWVEGASVET 1169
            G ++N +LDMQFLHG+YEPTLL+LYEPIGT+ G+   R+DTCC++ LS NLQKRTNP+IW  E+LPYDC  V  VP+PIGG+++++TN +IY+ Q+ PSCG+ LN  A+I TNFP+RQ      PL LD C    +   Q  I   TG++++++  +E A +TV    + ++   V P  +T+    Y+F+GS++CDSVLL Y                       PH                   + LG    D +I +        +  +   +D E   +S L   +   ++  + F+V D L N GP+G LT  E       N D  D        E+  VE++A   R              G V L++ +V+PR  + FEL  ++  +W + G  + T
Sbjct:  213 GEKINNVLDMQFLHGFYEPTLLVLYEPIGTWAGRVSARRDTCCIVALSFNLQKRTNPVIWFQESLPYDCSCVYSVPQPIGGVLVIATNSIIYMKQTLPSCGLPLNCNAQITTNFPMRQEIPQCAPLTLDNCRALAITDSQFFIATRTGKIYLLSLWVEQATQTVSNLLLHEVGCAVPPHCLTLMDAGYLFIGSRLCDSVLLRYTVSSMYVNSIGRIVDPEAAPAFSPHRTVIPMLNGIAEGIDVDHSEPLGSSTYDKFIANGANCLPTQSLYAFDEVDVELYGESILNQPSHHREILSYTFQVVDRLVNFGPMGQLTAGEVPCLAPGNTDPTDEALTAAQAELHHVELIACIPRSFEGISDPRENLRAGGVLLLHTSVRPRGLTAFELP-EYMSLWSLYGPPIVT 616
[Close]
BLAST of SMED30008961 vs. Ensembl Cavefish
Match: cpsf1 (cleavage and polyadenylation specific factor 1 [Source:ZFIN;Acc:ZDB-GENE-040709-2])

HSP 1 Score: 202.986 bits (515), Expect = 2.590e-57
Identity = 118/337 (35.01%), Postives = 195/337 (57.86%), Query Frame = -3 
Query:  153 ILDMQFLHGYYEPTLLILYEPIGTFVGQALTRKDTCCMITLSLNLQKRTNPIIWHLENLPYDCFKVAPVPRPIGGIVILSTNILIYLNQSQPSCGIALNGYAKILTNFPLR-QTSVNHPLALDGCECRFLNSEQLLIINGTGELFVVTFLLESAMRTVIGAHIEKIFKTVIPKTVTMCSTNYVFVGSQICDSVLLHYQPHDALGDVYITSNVTDYCIDANRSIKSIDEESEMD--SKLANEAKQ-IDVKRFDFRVTDTLKNIGPIGSLTVSENYGHANNDLNDTHHMRLANEMSFVEMVATTGRGEFGAVSLINFTVKPRLHSVFELSLDFYDMWWV 1151
            I+DM+FLHGYYEPTLLILYEP  T+ G+   R+DTC ++ +SLN+ ++ +P+IW L NLP+DC +V  VP+PIGG+V+ + N L+YLNQS P  G++LN      T FPLR Q  V   L+LD  +  F++S++++I    GE++V+T L+   MR+V   H +K   +V+   +      Y+F+GS++ +S+LL Y        +          +D+N +   +    E+D      +EA+    +  + F V D++ NIGP  + ++ E     + +         +N    +E+V  +G G+ GA+S++  +++P++ + FEL    +DMW V
Sbjct:  151 IIDMKFLHGYYEPTLLILYEPNQTWPGRVAVRQDTCSIVAISLNIMQKVHPVIWSLCNLPFDCTQVMAVPKPIGGVVVFAVNSLLYLNQSVPPFGVSLNSQTNGTTAFPLRVQEGVR--LSLDCSQAAFISSDKMVISLKGGEIYVLT-LITDGMRSVRAFHFDKAAASVLTTCMVTMEPGYMFLGSRLGNSLLLKYTEKLQETPMEEEPPNKKKRVDSNWTAGKVSLADELDEIEVYGSEAQSGTQLATYSFEVCDSILNIGPCVNASMGEP-AFLSEEFQ-------SNPEPDLEVVVCSGYGKNGALSVLQRSIRPQVVTTFELP-GCHDMWTV 475
[Close]
BLAST of SMED30008961 vs. Ensembl Sea Lamprey
Match: cpsf1 (cleavage and polyadenylation specific factor 1 [Source:ZFIN;Acc:ZDB-GENE-040709-2])

HSP 1 Score: 200.29 bits (508), Expect = 2.673e-59
Identity = 116/349 (33.24%), Postives = 198/349 (56.73%), Query Frame = -3 
Query:  153 ILDMQFLHGYYEPTLLILYEPIGTFVGQALTRKDTCCMITLSLNLQKRTNPIIWHLENLPYDCFKVAPVPRPIGGIVILSTNILIYLNQSQPSCGIALNGYAKILTNFPLR-QTSVNHPLALDGCECRFLNSEQLLIINGTGELFVVTFLLESAMRTVIGAHIEKIFKTVIPKTVTMCSTNYVFVGSQICDSVLLHY---------------QPHDALGDVYITSNVTDYCIDANRSIKSIDEESEMDSKLANEAKQIDVKRFDFRVTDTLKNIGPIGSLTVSENYGHANNDLNDTHHMRLANEMSFVEMVATTGRGEFGAVSLINFTVKPRLHSVFELSLDFYDMWWV 1151
            +LDMQFLHGYYEPTLLIL+EP  T+ G+   R+DTC ++ +SLN+ +R +PIIW L +LP+DC +   VP+PIGG+VI + N L+Y+NQS P  G +LN      T FPLR Q  V   + LD  +  F++ ++++I    GE++V+T +++  MR+V   H +K   +V+   +      Y+F+GS++ +S+LL Y               +P +       T    D+ + +++++  +D+  E++   +       +  + F V D++ NIGP  ++ + E        L++    R   ++   E+V  +G G+ GA+S++  +++P++ + FEL    YDMW V
Sbjct:  203 VLDMQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCGIVAISLNIAQRVHPIIWSLSSLPFDCTQALAVPKPIGGVVIFAVNSLLYMNQSVPPYGASLNSITHGSTAFPLRIQDGVK--MTLDCAQATFVSYDKIVISLKGGEIYVLTLIID-GMRSVRSFHFDKAAASVLTTCMLTMEPGYLFLGSRLGNSLLLKYTEKLTESAAETMSKDKPEEPPNKRKRT-EAGDWMV-SSKNVALLDDMDEIEVYGSEAQSGTQLATYSFEVCDSILNIGPCANVAMGE-----PAFLSEEFQNRPEPDL---ELVCCSGYGKNGALSVVQRSIRPQVVTTFELP-GCYDMWTV 537
[Close]
BLAST of SMED30008961 vs. Ensembl Sea Lamprey
Match: cpsf1 (cleavage and polyadenylation specific factor 1 [Source:ZFIN;Acc:ZDB-GENE-040709-2])

HSP 1 Score: 197.978 bits (502), Expect = 8.647e-58
Identity = 115/345 (33.33%), Postives = 193/345 (55.94%), Query Frame = -3 
Query:  153 ILDMQFLHGYYEPTLLILYEPIGTFVGQALTRKDTCCMITLSLNLQKRTNPIIWHLENLPYDCFKVAPVPRPIGGIVILSTNILIYLNQSQPSCGIALNGYAKILTNFPLR-QTSVNHPLALDGCECRFLNSEQLLIINGTGELFVVTFLLESAMRTVIGAHIEKIFKTVIPKTVTMCSTNYVFVGSQICDSVLLHY-----------QPHDALGDVYITSNVTDYCIDANRSIKSIDEESEMDSKLANEAKQIDVKRFDFRVTDTLKNIGPIGSLTVSENYGHANNDLNDTHHMRLANEMSFVEMVATTGRGEFGAVSLINFTVKPRLHSVFELSLDFYDMWWV 1151
            +LDMQFLHGYYEPTLLIL+EP  T+ G+   R+DTC ++ +SLN+ +R +PIIW L +LP+DC +   VP+PIGG+VI + N L+Y+NQS P  G +LN      T FPLR Q  V   + LD  +  F++ ++++I    GE++V+T +++  MR+V   H +K   +V+   +      Y+F+GS++ +S+LL Y              D   +       T+      +++  +D+  E++   +       +  + F V D++ NIGP  ++ + E        L++    R   ++   E+V  +G G+ GA+S++  +++P++ + FEL    YDMW V
Sbjct:  203 VLDMQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCGIVAISLNIAQRVHPIIWSLSSLPFDCTQALAVPKPIGGVVIFAVNSLLYMNQSVPPYGASLNSITHGSTAFPLRIQDGVK--MTLDCAQATFVSYDKIVISLKGGEIYVLTLIID-GMRSVRSFHFDKAAASVLTTCMLTMEPGYLFLGSRLGNSLLLKYTEKLTESAAETMSKDKPEEPPNKRKRTEAGDWMAKNVALLDDMDEIEVYGSEAQSGTQLATYSFEVCDSILNIGPCANVAMGE-----PAFLSEEFQNRPEPDL---ELVCCSGYGKNGALSVVQRSIRPQVVTTFELP-GCYDMWTV 535
[Close]
BLAST of SMED30008961 vs. Ensembl Sea Lamprey
Match: ddb1 (damage-specific DNA binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1272])

HSP 1 Score: 46.595 bits (109), Expect = 7.883e-6
Identity = 49/215 (22.79%), Postives = 90/215 (41.86%), Query Frame = -3 
Query:  525 ILDMQFLHGYYEPTLLILYE-PIGTFVGQALTRKDTCCMITLSLNLQ-KRTNPIIWHLENLPYDCFKVAPVPRPIGGIVILSTNILIYLNQSQPSCGIALNGYAKILTNFPLRQTSVNHPLALDGCECRF-LNSEQLLIINGTGELFVVTFLLESAM---RTVIGAHIEKIFKTVIPKTVTMCSTNYVFVGSQICDSVLLHYQPHDALGDVYITS 1151
            ++D++FL G   PT+  +Y+ P G  V             T  ++L+ K  N   W  +N+  +   V  VP+P+GG +I+    + Y N  Q                 P+   ++     +  C+ R   N  + L+ +  G LF++    +  M    TV    +E + +T I + +T      V++GS++ DS L+           Y+T+
Sbjct:  144 VIDVKFLFGCAVPTICFVYQDPQGRHVK------------TYEVSLRDKEFNKGPWKQDNVDAEAGIVIAVPQPMGGALIIGQEAITYHNGDQ---------------YLPIAPPAIKQSTIV--CQNRVDANGSRYLLGDMEGRLFMLLLERDELMDGTATVRDLRVEMLGETSIAECLTYLDNGVVYIGSRLGDSQLVKLNVDSNEQGSYVTT 329
[Close]
BLAST of SMED30008961 vs. Ensembl Yeast
Match: CFT1 (RNA-binding subunit of the mRNA cleavage and polyadenylation factor; involved in poly(A) site recognition and required for both pre-mRNA cleavage and polyadenylation, 51% sequence similarity with mammalian AAUAA-binding subunit of CPSF [Source:SGD;Acc:S000002709])

HSP 1 Score: 50.0618 bits (118), Expect = 5.104e-7
Identity = 33/109 (30.28%), Postives = 54/109 (49.54%), Query Frame = -3 
Query:  846 ILDMQFLHGYYEPTLLILYEPIGTFVGQALTRKDTCCMITLSLNLQ------KRTNPIIWHLENLPYDCFKVAPVPRPIGGIVILSTNILIYL-NQSQPSCGIALNGYA 1151
            I+D+QFL  + +PT+ +LY+P   + G     K     + L+LN+Q      K  +  I  ++ LP+D   + PV     G +I+ TN L +L N       + LN +A
Sbjct:  213 IIDIQFLKNFTKPTIALLYQPKLVWAGNTTISKLPTQYVILTLNIQPAESATKIESTTIAFVKELPWDLHTIVPVS---NGAIIVGTNELAFLDNTGVLQSTVLLNSFA 318
[Close]
BLAST of SMED30008961 vs. Ensembl Nematostella
Match: EDO34530 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SP44])

HSP 1 Score: 205.297 bits (521), Expect = 1.640e-58
Identity = 121/357 (33.89%), Postives = 203/357 (56.86%), Query Frame = -3 
Query:  117 ILDMQFLHGYYEPTLLILYEPIGTFVGQALTRKDTCCMITLSLNLQKRTNPIIWHLENLPYDCFKVAPVPRPIGGIVILSTNILIYLNQSQPSCGIALNGYAKILTNFPLR-QTSVNHPLALDGCECRFLNSEQLLIINGTGELFVVTFLLESAMRTVIGAHIEKIFKTVIPKTVTMCSTNYVFVGSQICDSVLLHY--QPHDALGDVYITS---------NVTDYCIDANRSIKSIDEESEMDSKLANEAKQIDVKRFDFRVTDTLKNIGPIGSLTVSENYGHANNDLNDTHHMRLANEMSFVEMVATTGRGEFGAVSLINFTVKPRLHSVFELSLDFYDMWWVEGASVETADTTN 1151
            ILD+QFLHGYYEPTLLILYEP+ T+ G+   R DTC ++ +SLN+ ++ +P++W L  LP+DC  V PVP+PIGG+++   N L+YLNQS P  G+++N   +  T FPL+ Q  V   + L+G    F+ +++L+     GE++VVT L+   +R+V     +K   +V+   V  C   Y+F+GS++ +S+L+ Y  +P D    VY T          N+  + I     +  +D+  E++   A +   +++  + F V D+L NIGP   + + E        L+ + +   A E+  +E+V+ +G G+ GA++++  +++P++ + FEL     DMW V     +    TN
Sbjct:  203 ILDIQFLHGYYEPTLLILYEPLKTWAGRLAMRNDTCALVAVSLNMSQKAHPVVWQLSCLPFDCIYVMPVPKPIGGVLVCCMNALLYLNQSVPPYGVSVNSIGENSTVFPLKPQKGVT--ITLEGSNAIFIANDKLVFSLKGGEIYVVT-LIADGVRSVRNFVFDKTAASVLTSCVCECGDGYLFLGSRLGNSLLVKYTEKPQDI---VYGTENNAQSMQCDNIERWQILNGSLLLIVDDLDELEVYGAQQEAGVELTSYTFEVCDSLLNIGPCSCMDIGEPAF-----LSVSSYFADAQELD-LEVVSCSGYGKNGALTVLQRSIRPQVVTTFELP-GCTDMWTVFSKDQKKGAQTN 546
[Close]
BLAST of SMED30008961 vs. Ensembl Medaka
Match: cpsf1 (cleavage and polyadenylation specific factor 1 [Source:NCBI gene;Acc:101172177])

HSP 1 Score: 202.986 bits (515), Expect = 2.712e-57
Identity = 121/356 (33.99%), Postives = 198/356 (55.62%), Query Frame = -3 
Query:  153 ILDMQFLHGYYEPTLLILYEPIGTFVGQALTRKDTCCMITLSLNLQKRTNPIIWHLENLPYDCFKVAPVPRPIGGIVILSTNILIYLNQSQPSCGIALNGYAKILTNFPLR-QTSVNHPLALDGCECRFLNSEQLLIINGTGELFVVTFLLESAMRTVIGAHIEKIFKTVIPKTVTMCSTNYVFVGSQICDSVLLHY----------------------QPHDALGDVYITSNVTDYCIDANRSIKSIDEESEMDSKLANEAKQIDVKRFDFRVTDTLKNIGPIGSLTVSENYGHANNDLNDTHHMRLANEMSFVEMVATTGRGEFGAVSLINFTVKPRLHSVFELSLDFYDMWWV 1151
            I+DM+FLHGYYEPTLLIL+EP  T+ G+   R+DTC ++ +SLN+ ++ +P+IW L NLP+DC +V  VP+PIGG+V+ + N L+YLNQS P  G++LN      T+FPLR Q  V   + LD C+  F+  ++++I    GE++V+T L+   MR+V   H +K   +V+   +      Y+F+GS++ +S+LL Y                      +P +    V  +SN TD   +    I+    E++  ++LA          F F V D++ NIGP  + ++ E     + +         +N    +E+V  +G G+ GA+S++  +++P++ + FEL    +DMW V
Sbjct:  203 IIDMKFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLNIMQKVHPVIWSLSNLPFDCTQVMAVPKPIGGVVVFAVNSLLYLNQSVPPYGVSLNSQTNGTTSFPLRVQEEVK--ITLDCCQSDFIAYDKMVISLKGGEIYVLT-LITDGMRSVRAFHFDKAAASVLTTCMVTMEPGYLFLGSRLGNSLLLKYTEKLQEAPAEDGNDKQEKEKQEEPPNKKKRVESSSNWTDEVDE----IEVYGSEAQSGTQLAT---------FSFEVCDSILNIGPCANASMGEP-AFLSEEFQ-------SNPEPDLEIVVCSGYGKNGALSVLQRSIRPQVVTTFELP-GCHDMWTV 533
[Close]
BLAST of SMED30008961 vs. Ensembl Medaka
Match: cpsf1 (cleavage and polyadenylation specific factor 1 [Source:NCBI gene;Acc:101172177])

HSP 1 Score: 202.986 bits (515), Expect = 2.753e-57
Identity = 121/356 (33.99%), Postives = 198/356 (55.62%), Query Frame = -3 
Query:  153 ILDMQFLHGYYEPTLLILYEPIGTFVGQALTRKDTCCMITLSLNLQKRTNPIIWHLENLPYDCFKVAPVPRPIGGIVILSTNILIYLNQSQPSCGIALNGYAKILTNFPLR-QTSVNHPLALDGCECRFLNSEQLLIINGTGELFVVTFLLESAMRTVIGAHIEKIFKTVIPKTVTMCSTNYVFVGSQICDSVLLHY----------------------QPHDALGDVYITSNVTDYCIDANRSIKSIDEESEMDSKLANEAKQIDVKRFDFRVTDTLKNIGPIGSLTVSENYGHANNDLNDTHHMRLANEMSFVEMVATTGRGEFGAVSLINFTVKPRLHSVFELSLDFYDMWWV 1151
            I+DM+FLHGYYEPTLLIL+EP  T+ G+   R+DTC ++ +SLN+ ++ +P+IW L NLP+DC +V  VP+PIGG+V+ + N L+YLNQS P  G++LN      T+FPLR Q  V   + LD C+  F+  ++++I    GE++V+T L+   MR+V   H +K   +V+   +      Y+F+GS++ +S+LL Y                      +P +    V  +SN TD   +    I+    E++  ++LA          F F V D++ NIGP  + ++ E     + +         +N    +E+V  +G G+ GA+S++  +++P++ + FEL    +DMW V
Sbjct:  203 IIDMKFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLNIMQKVHPVIWSLSNLPFDCTQVMAVPKPIGGVVVFAVNSLLYLNQSVPPYGVSLNSQTNGTTSFPLRVQEEVK--ITLDCCQSDFIAYDKMVISLKGGEIYVLT-LITDGMRSVRAFHFDKAAASVLTTCMVTMEPGYLFLGSRLGNSLLLKYTEKLQEAPAEDGNDKQEKEKQEEPPNKKKRVESSSNWTDEVDE----IEVYGSEAQSGTQLAT---------FSFEVCDSILNIGPCANASMGEP-AFLSEEFQ-------SNPEPDLEIVVCSGYGKNGALSVLQRSIRPQVVTTFELP-GCHDMWTV 533
[Close]
BLAST of SMED30008961 vs. Ensembl Medaka
Match: ddb1 (damage specific DNA binding protein 1 [Source:NCBI gene;Acc:101162350])

HSP 1 Score: 53.5286 bits (127), Expect = 3.166e-7
Identity = 53/202 (26.24%), Postives = 87/202 (43.07%), Query Frame = -3 
Query:  570 ILDMQFLHGYYEPTLLILYE-PIGTFVGQALTRKDTCCMITLSLNL-QKRTNPIIWHLENLPYDCFKVAPVPRPIGGIVILSTNILIYLNQSQPSCGIALNGYAKILTNFP--LRQTSVNHPLALDGCECRF-LNSEQLLIINGTGELFVVTFLLESAMRTVIG---AHIEKIFKTVIPKTVTMCSTNYVFVGSQICDSVLL 1151
            ++D+ FL+G   PT+  +Y+ P G  V             T  ++L +K  N   W  EN+  +   V PVP P GG +I+    + Y N              K L   P  ++Q+++        C  R   N  + L+ +  G LF++    E  M   +     H+E + +T I + +T      VFVGS++ DS L+
Sbjct:  164 VIDVHFLYGCQAPTVCFIYQDPQGRHVK------------TYEVSLREKEFNKGPWKQENVEAEASMVIPVPEPFGGAIIIGQESITYHNGD------------KYLAIAPPTIKQSTIV-------CHNRVDPNGSRYLLGDMEGRLFMLLLEKEELMDGTVALKDLHVELLGETSIAECLTYLDNGVVFVGSRLGDSQLV 334
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BLAST of SMED30008961 vs. Ensembl Medaka
Match: ddb1 (damage specific DNA binding protein 1 [Source:NCBI gene;Acc:101162350])

HSP 1 Score: 53.1434 bits (126), Expect = 3.495e-7
Identity = 53/202 (26.24%), Postives = 87/202 (43.07%), Query Frame = -3 
Query:  570 ILDMQFLHGYYEPTLLILYE-PIGTFVGQALTRKDTCCMITLSLNL-QKRTNPIIWHLENLPYDCFKVAPVPRPIGGIVILSTNILIYLNQSQPSCGIALNGYAKILTNFP--LRQTSVNHPLALDGCECRF-LNSEQLLIINGTGELFVVTFLLESAMRTVIG---AHIEKIFKTVIPKTVTMCSTNYVFVGSQICDSVLL 1151
            ++D+ FL+G   PT+  +Y+ P G  V             T  ++L +K  N   W  EN+  +   V PVP P GG +I+    + Y N              K L   P  ++Q+++        C  R   N  + L+ +  G LF++    E  M   +     H+E + +T I + +T      VFVGS++ DS L+
Sbjct:  164 VIDVHFLYGCQAPTVCFIYQDPQGRHVK------------TYEVSLREKEFNKGPWKQENVEAEASMVIPVPEPFGGAIIIGQESITYHNGD------------KYLAIAPPTIKQSTIV-------CHNRVDPNGSRYLLGDMEGRLFMLLLEKEELMDGTVALKDLHVELLGETSIAECLTYLDNGVVFVGSRLGDSQLV 334
[Close]
BLAST of SMED30008961 vs. Ensembl Medaka
Match: ddb1 (damage specific DNA binding protein 1 [Source:NCBI gene;Acc:101162350])

HSP 1 Score: 53.1434 bits (126), Expect = 3.500e-7
Identity = 53/202 (26.24%), Postives = 87/202 (43.07%), Query Frame = -3 
Query:  570 ILDMQFLHGYYEPTLLILYE-PIGTFVGQALTRKDTCCMITLSLNL-QKRTNPIIWHLENLPYDCFKVAPVPRPIGGIVILSTNILIYLNQSQPSCGIALNGYAKILTNFP--LRQTSVNHPLALDGCECRF-LNSEQLLIINGTGELFVVTFLLESAMRTVIG---AHIEKIFKTVIPKTVTMCSTNYVFVGSQICDSVLL 1151
            ++D+ FL+G   PT+  +Y+ P G  V             T  ++L +K  N   W  EN+  +   V PVP P GG +I+    + Y N              K L   P  ++Q+++        C  R   N  + L+ +  G LF++    E  M   +     H+E + +T I + +T      VFVGS++ DS L+
Sbjct:  164 VIDVHFLYGCQAPTVCFIYQDPQGRHVK------------TYEVSLREKEFNKGPWKQENVEAEASMVIPVPEPFGGAIIIGQESITYHNGD------------KYLAIAPPTIKQSTIV-------CHNRVDPNGSRYLLGDMEGRLFMLLLEKEELMDGTVALKDLHVELLGETSIAECLTYLDNGVVFVGSRLGDSQLV 334
[Close]
BLAST of SMED30008961 vs. Planmine SMEST
Match: SMESG000051959.1 (SMESG000051959.1)

HSP 1 Score: 786.178 bits (2029), Expect = 0.000e+0
Identity = 390/391 (99.74%), Postives = 390/391 (99.74%), Query Frame = -3 
Query:    3 LNGVRVNYILDMQFLHGYYEPTLLILYEPIGTFVGQALTRKDTCCMITLSLNLQKRTNPIIWHLENLPYDCFKVAPVPRPIGGIVILSTNILIYLNQSQPSCGIALNGYAKILTNFPLRQTSVNHPLALDGCECRFLNSEQLLIINGTGELFVVTFLLESAMRTVIGAHIEKIFKTVIPKTVTMCSTNYVFVGSQICDSVLLHYQPHDALGDVYITSNVTDYCIDANRSIKSIDEESEMDSKLANEAKQIDVKRFDFRVTDTLKNIGPIGSLTVSENYGHANNDLNDTHHMRLANEMSFVEMVATTGRGEFGAVSLINFTVKPRLHSVFELSLDFYDMWWVEGASVETADTTNINTCDIDSQLXXXXXXXXXXXDQHCNKEIPDPTISYSK 1175
            LNGVRVNYILDMQFLHGYYEPTLLILYEPIGTFVGQALTRKDTCCMITLSLNLQKRTNPIIWHLENLPYDCFKVAPVPRPIGGIVILSTNILIYLNQSQPSCGIALNGYAKILTNFPLRQTSVNHPLALDGCECRFLNSEQLLIINGTGELFVVTFLLESAMRTVIGAHIEKIFKTVIPKTVTMCSTNYVFVGSQICDSVLLHYQPHDALGDVYITSNVTDYCIDANRSIKSIDEESEMDSKLANE KQIDVKRFDFRVTDTLKNIGPIGSLTVSENYGHANNDLNDTHHMRLANEMSFVEMVATTGRGEFGAVSLINFTVKPRLHSVFELSLDFYDMWWVEGASVETADTTNINTCDIDSQLDRDADEDRMDVDQHCNKEIPDPTISYSK
Sbjct:  222 LNGVRVNYILDMQFLHGYYEPTLLILYEPIGTFVGQALTRKDTCCMITLSLNLQKRTNPIIWHLENLPYDCFKVAPVPRPIGGIVILSTNILIYLNQSQPSCGIALNGYAKILTNFPLRQTSVNHPLALDGCECRFLNSEQLLIINGTGELFVVTFLLESAMRTVIGAHIEKIFKTVIPKTVTMCSTNYVFVGSQICDSVLLHYQPHDALGDVYITSNVTDYCIDANRSIKSIDEESEMDSKLANEVKQIDVKRFDFRVTDTLKNIGPIGSLTVSENYGHANNDLNDTHHMRLANEMSFVEMVATTGRGEFGAVSLINFTVKPRLHSVFELSLDFYDMWWVEGASVETADTTNINTCDIDSQLDRDADEDRMDVDQHCNKEIPDPTISYSK 612
The following BLAST results are available for this feature:
BLAST of SMED30008961 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 4
Match NameE-valueIdentityDescription
CPSF13.640e-5633.72cleavage and polyadenylation specific factor 1 [So... [more]
CPSF13.640e-5633.72cleavage and polyadenylation specific factor 1 [So... [more]
CPSF13.640e-5633.72cleavage and polyadenylation specific factor 1 [So... [more]
CPSF13.640e-5633.72cleavage and polyadenylation specific factor 1 [So... [more]
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BLAST of SMED30008961 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 2
Match NameE-valueIdentityDescription
cpsf-17.918e-5132.11Probable cleavage and polyadenylation specificity ... [more]
cpsf-16.523e-4931.88Probable cleavage and polyadenylation specificity ... [more]
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BLAST of SMED30008961 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 3
Match NameE-valueIdentityDescription
Cpsf1601.446e-5834.16gene:FBgn0024698 transcript:FBtr0089258[more]
Cpsf1607.080e-3829.75gene:FBgn0024698 transcript:FBtr0089257[more]
pic5.912e-822.61gene:FBgn0260962 transcript:FBtr0082709[more]
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BLAST of SMED30008961 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 3
Match NameE-valueIdentityDescription
cpsf15.906e-5633.91cleavage and polyadenylation specific factor 1 [So... [more]
cpsf13.750e-5433.24cleavage and polyadenylation specific factor 1 [So... [more]
ddb19.111e-826.73damage-specific DNA binding protein 1 [Source:ZFIN... [more]
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BLAST of SMED30008961 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008961 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 4
Match NameE-valueIdentityDescription
Cpsf12.614e-5533.24cleavage and polyadenylation specific factor 1 [So... [more]
Cpsf12.880e-5533.24cleavage and polyadenylation specific factor 1 [So... [more]
Ddb11.584e-725.87damage specific DNA binding protein 1 [Source:MGI ... [more]
Ddb17.943e-625.87damage specific DNA binding protein 1 [Source:MGI ... [more]
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BLAST of SMED30008961 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q9V726|CPSF1_DROME1.450e-5734.16Cleavage and polyadenylation specificity factor su... [more]
sp|Q10570|CPSF1_HUMAN1.748e-5533.72Cleavage and polyadenylation specificity factor su... [more]
sp|Q9EPU4|CPSF1_MOUSE1.828e-5433.24Cleavage and polyadenylation specificity factor su... [more]
sp|Q10569|CPSF1_BOVIN2.530e-5433.82Cleavage and polyadenylation specificity factor su... [more]
sp|Q9N4C2|CPSF1_CAEEL1.007e-4932.11Probable cleavage and polyadenylation specificity ... [more]
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BLAST of SMED30008961 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A4Z2DNI11.835e-6935.38Cleavage and polyadenylation specificity factor su... [more]
A0A4E0RDS12.827e-6936.30Cleavage and polyadenylation specificity factor su... [more]
A0A075AAA23.382e-6936.30Reverse transcriptase domain-containing protein OS... [more]
H2KV891.004e-6835.80Cleavage and polyadenylation specificity factor su... [more]
A0A5J4NP061.400e-6834.81Cleavage and polyadenylation specificity factor su... [more]
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BLAST of SMED30008961 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
cpsf12.590e-5735.01cleavage and polyadenylation specific factor 1 [So... [more]
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BLAST of SMED30008961 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 3
Match NameE-valueIdentityDescription
cpsf12.673e-5933.24cleavage and polyadenylation specific factor 1 [So... [more]
cpsf18.647e-5833.33cleavage and polyadenylation specific factor 1 [So... [more]
ddb17.883e-622.79damage-specific DNA binding protein 1 [Source:ZFIN... [more]
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BLAST of SMED30008961 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1
Match NameE-valueIdentityDescription
CFT15.104e-730.28RNA-binding subunit of the mRNA cleavage and polya... [more]
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BLAST of SMED30008961 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO345301.640e-5833.89Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of SMED30008961 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
cpsf12.712e-5733.99cleavage and polyadenylation specific factor 1 [So... [more]
cpsf12.753e-5733.99cleavage and polyadenylation specific factor 1 [So... [more]
ddb13.166e-726.24damage specific DNA binding protein 1 [Source:NCBI... [more]
ddb13.495e-726.24damage specific DNA binding protein 1 [Source:NCBI... [more]
ddb13.500e-726.24damage specific DNA binding protein 1 [Source:NCBI... [more]
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BLAST of SMED30008961 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000051959.10.000e+099.74SMESG000051959.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30008961 ID=SMED30008961|Name=SMED30008961|organism=Schmidtea mediterranea sexual|type=transcript|length=1177bp
TTTTTGGAATAACTAATGGTTGGATCGGGAATTTCTTTATTGCAATGCTG
ATCAACATCCATTCGGTCTTCGTCAGCATCTCGATCTAGTTGTGAATCTA
TATCACAAGTGTTGATATTCGTTGTATCTGCAGTTTCAACAGATGCCCCT
TCAACCCACCACATGTCATAAAAATCCAATGACAACTCAAATACGCTATG
TAATCTCGGTTTAACAGTAAAATTAATCAACGAGACAGCGCCAAATTCTC
CTCGCCCGGTCGTTGCAACCATTTCAACAAAACTCATTTCATTGGCTAAT
CTCATATGATGCGTATCATTTAAATCATTATTTGCATGTCCATAATTTTC
AGACACTGTCAATGACCCAATAGGTCCAATATTTTTCAATGTATCTGTCA
CTCGGAAATCAAATCTTTTAACATCTATTTGCTTCGCTTCATTTGCCAAC
TTCGAATCCATCTCACTTTCTTCATCAATTGATTTTATAGAACGATTTGC
GTCAATACAGTAGTCCGTAACATTTGATGTGATATAGACATCCCCGAGTG
CGTCATGCGGCTGGTAATGCAACAGCACCGAGTCACAGATCTGAGATCCC
ACGAATACATAATTAGTCGAGCACATCGTCACAGTTTTCGGAATGACAGT
TTTGAAAATCTTTTCAATGTGAGCCCCAATGACAGTTCGCATAGCGGACT
CGAGCAGAAAGGTGACGACAAACAGCTCCCCGGTACCGTTAATGATTAGC
AGCTGCTCGGAATTCAAAAACCGGCATTCACAGCCGTCCAGTGCCAGAGG
ATGATTCACTGAGGTCTGTCTCAACGGGAAATTCGTGAGGATTTTCGCAT
AGCCGTTTAATGCAATCCCACAAGACGGCTGGCTTTGGTTGAGATAAATG
AGAATATTTGTCGAGAGAATCACGATTCCACCGATCGGTCTAGGAACCGG
GGCGACCTTGAAACAATCATACGGCAAGTTCTCCAGATGCCAAATAATAG
GATTGGTTCGTTTCTGGAGATTCAATGATAATGTAATCATGCAACAGGTA
TCTTTTCTCGTTAACGCTTGTCCGACAAATGTCCCGATTGGTTCATAGAG
AATCAATAACGTCGGTTCATAATATCCGTGTAAGAATTGCATATCGAGAA
TATAATTCACTCGAACTCCATTTAAAC
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protein sequence of SMED30008961-orf-1

>SMED30008961-orf-1 ID=SMED30008961-orf-1|Name=SMED30008961-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=391bp
LNGVRVNYILDMQFLHGYYEPTLLILYEPIGTFVGQALTRKDTCCMITLS
LNLQKRTNPIIWHLENLPYDCFKVAPVPRPIGGIVILSTNILIYLNQSQP
SCGIALNGYAKILTNFPLRQTSVNHPLALDGCECRFLNSEQLLIINGTGE
LFVVTFLLESAMRTVIGAHIEKIFKTVIPKTVTMCSTNYVFVGSQICDSV
LLHYQPHDALGDVYITSNVTDYCIDANRSIKSIDEESEMDSKLANEAKQI
DVKRFDFRVTDTLKNIGPIGSLTVSENYGHANNDLNDTHHMRLANEMSFV
EMVATTGRGEFGAVSLINFTVKPRLHSVFELSLDFYDMWWVEGASVETAD
TTNINTCDIDSQLDRDADEDRMDVDQHCNKEIPDPTISYSK
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002056medial muscle cell
PLANA:0002109X1 cell
PLANA:0002111X2 cell
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
Vocabulary: molecular function
TermDefinition
GO:0005515protein binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF10433MMS1_Ncoord: 8..342
e-value: 3.4E-18
score: 65.6
NoneNo IPR availablePANTHERPTHR10644:SF2CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 1coord: 6..343
NoneNo IPR availablePANTHERPTHR10644DNA REPAIR/RNA PROCESSING CPSF FAMILYcoord: 6..343
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3DG3DSA:2.130.10.10coord: 3..218
e-value: 5.2E-35
score: 122.6