40S ribosomal protein S4

Overview
Name40S ribosomal protein S4
Smed IDSMED30008910
Length (bp)1162
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of 40S ribosomal protein S4 (SMED30008910) t-SNE clustered cells

Violin plots show distribution of expression levels for 40S ribosomal protein S4 (SMED30008910) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of 40S ribosomal protein S4 (SMED30008910) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for 40S ribosomal protein S4 (SMED30008910) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30008910

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 13

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
pharynxSMED30008910h1SMcG0019215 dd_Smed_v4_82_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30008910h1SMcG0019215 dd_Smed_v4_82_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30008910h1SMcG0019215 dd_Smed_v4_82_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30008910h1SMcG0019215 dd_Smed_v4_82_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30008910h1SMcG0019215 dd_Smed_v4_82_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30008910h1SMcG0019215 dd_Smed_v4_82_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30008910h1SMcG0019215 dd_Smed_v4_82_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30008910h1SMcG0019215 dd_Smed_v4_82_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30008910h1SMcG0019215 dd_Smed_v4_82_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30008910h1SMcG0019215 dd_Smed_v4_82_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30008910h1SMcG0019215 OX_Smed_1.0.03394ox_Smed_v2PMID:24238224
Kao et al., 2013		whole organism asexual adult RNA-sequencing evidence
gamma neoblastSMED30008910h1SMcG0019215 dd_Smed_v6_82_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30008910h1SMcG0019215 dd_Smed_v6_82_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of 40S ribosomal protein S4 vs. Ensembl Human
Match: RPS4Y1 (ribosomal protein S4 Y-linked 1 [Source:HGNC Symbol;Acc:HGNC:10425])

HSP 1 Score: 344.739 bits (883), Expect = 4.848e-118
Identity = 159/260 (61.15%), Postives = 197/260 (75.77%), Query Frame = 3 
Query:  363 QARGVKKHLKRLNAPKSWCLDKVSGNYAVRPRSGPHKQSNSIPLTYILRQNLKYALTYSEVPKILMQKTVKVDNVVRTDKKYSVGFMDVISIEKNSEFFRIIYDTKRRFLLHRIHVDESKYKLCRVKKLGVLAGDIPYLTTHDGRTIRYPDPSIKPNDTCQVDINTDKIINYIKFETGNLCMVTGGHNQGRVGIVTNIERHIGGYDIVHIRDSQNQQFSTRLVNVFIIGKSNKPWISLPKGAGLRLSIAEERDRRLEAKK 1142
             ARG KKHLKR+ APK W LDK++G +A RP +GPHK    +PL   LR  LKYALT  EV KI MQ+ +K+D  VR D  Y  GFMDVISIEK  E FR++YDTK RF +HRI V+E+KYKLC+V+K+ V    IP+L THD RTIRYPDP IK NDT Q+D+ T KIIN+IKF+TGNLCMV GG N GRVG++TN ERH G +D+VH++D+    F+TRL N+F+IG  NKPWISLP+G G+RL++AEERD+RL  K+
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPRGKGIRLTVAEERDKRLATKQ 260
[Close]
BLAST of 40S ribosomal protein S4 vs. Ensembl Human
Match: RPS4X (ribosomal protein S4 X-linked [Source:HGNC Symbol;Acc:HGNC:10424])

HSP 1 Score: 343.584 bits (880), Expect = 1.459e-117
Identity = 160/260 (61.54%), Postives = 199/260 (76.54%), Query Frame = 3 
Query:  363 QARGVKKHLKRLNAPKSWCLDKVSGNYAVRPRSGPHKQSNSIPLTYILRQNLKYALTYSEVPKILMQKTVKVDNVVRTDKKYSVGFMDVISIEKNSEFFRIIYDTKRRFLLHRIHVDESKYKLCRVKKLGVLAGDIPYLTTHDGRTIRYPDPSIKPNDTCQVDINTDKIINYIKFETGNLCMVTGGHNQGRVGIVTNIERHIGGYDIVHIRDSQNQQFSTRLVNVFIIGKSNKPWISLPKGAGLRLSIAEERDRRLEAKK 1142
             ARG KKHLKR+ APK W LDK++G +A RP +GPHK    +PL   LR  LKYALT  EV KI MQ+ +K+D  VRTD  Y  GFMDVISI+K  E FR+IYDTK RF +HRI  +E+KYKLC+V+K+ V    IP+L THD RTIRYPDP IK NDT Q+D+ T KI ++IKF+TGNLCMVTGG N GR+G++TN ERH G +D+VH++D+    F+TRL N+F+IGK NKPWISLP+G G+RL+IAEERD+RL AK+
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQ 260
[Close]
BLAST of 40S ribosomal protein S4 vs. Ensembl Human
Match: RPS4Y1 (ribosomal protein S4 Y-linked 1 [Source:HGNC Symbol;Acc:HGNC:10425])

HSP 1 Score: 341.658 bits (875), Expect = 9.200e-117
Identity = 157/257 (61.09%), Postives = 195/257 (75.88%), Query Frame = 3 
Query:  351 SSFEQARGVKKHLKRLNAPKSWCLDKVSGNYAVRPRSGPHKQSNSIPLTYILRQNLKYALTYSEVPKILMQKTVKVDNVVRTDKKYSVGFMDVISIEKNSEFFRIIYDTKRRFLLHRIHVDESKYKLCRVKKLGVLAGDIPYLTTHDGRTIRYPDPSIKPNDTCQVDINTDKIINYIKFETGNLCMVTGGHNQGRVGIVTNIERHIGGYDIVHIRDSQNQQFSTRLVNVFIIGKSNKPWISLPKGAGLRLSIAEERD 1121
            + F +ARG KKHLKR+ APK W LDK++G +A RP +GPHK    +PL   LR  LKYALT  EV KI MQ+ +K+D  VR D  Y  GFMDVISIEK  E FR++YDTK RF +HRI V+E+KYKLC+V+K+ V    IP+L THD RTIRYPDP IK NDT Q+D+ T KIIN+IKF+TGNLCMV GG N GRVG++TN ERH G +D+VH++D+    F+TRL N+F+IG  NKPWISLP+G G+RL++AEERD
Sbjct:    6 AKFSKARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPRGKGIRLTVAEERD 262
[Close]
BLAST of 40S ribosomal protein S4 vs. Ensembl Human
Match: RPS4Y2 (ribosomal protein S4 Y-linked 2 [Source:HGNC Symbol;Acc:HGNC:18501])

HSP 1 Score: 327.791 bits (839), Expect = 2.184e-111
Identity = 153/260 (58.85%), Postives = 193/260 (74.23%), Query Frame = 3 
Query:  363 QARGVKKHLKRLNAPKSWCLDKVSGNYAVRPRSGPHKQSNSIPLTYILRQNLKYALTYSEVPKILMQKTVKVDNVVRTDKKYSVGFMDVISIEKNSEFFRIIYDTKRRFLLHRIHVDESKYKLCRVKKLGVLAGDIPYLTTHDGRTIRYPDPSIKPNDTCQVDINTDKIINYIKFETGNLCMVTGGHNQGRVGIVTNIERHIGGYDIVHIRDSQNQQFSTRLVNVFIIGKSNKPWISLPKGAGLRLSIAEERDRRLEAKK 1142
             ARG KKHLKR+ APK W LDK++G +A RP +GPHK    +PL   LR  LKYALT  EV KI MQ  +K+D  VR D  Y  GF+DVISIEK  E FR++Y+TK  F +HRI V+E+KYKLC+V+K+ V    IP+L THD RTIRYPDP IK NDT Q+D+ T KI ++IKF+TGN+CMV  G N GRVG++TN ERH G  D+VH++D+    F+TR+ N+F+IG  NKPWISLP+G G+RL+IAEERD+RL AK+
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQHFLKIDGKVRVDITYPAGFIDVISIEKTGEHFRLVYNTKGCFAVHRITVEEAKYKLCKVRKITVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKITSFIKFDTGNVCMVIAGANLGRVGVITNRERHPGSCDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEERDKRLAAKQ 260
[Close]
BLAST of 40S ribosomal protein S4 vs. Ensembl Celegans
Match: rps-4 (40S ribosomal protein S4 [Source:UniProtKB/Swiss-Prot;Acc:Q9N3X2])

HSP 1 Score: 308.145 bits (788), Expect = 4.222e-104
Identity = 146/257 (56.81%), Postives = 186/257 (72.37%), Query Frame = 3 
Query:  369 RGVKKHLKRLNAPKSWCLDKVSGNYAVRPRSGPHKQSNSIPLTYILRQNLKYALTYSEVPKILMQKTVKVDNVVRTDKKYSVGFMDVISIEKNSEFFRIIYDTKRRFLLHRIHVDESKYKLCRVKKLGVLAGDIPYLTTHDGRTIRYPDPSIKPNDTCQVDINTDKIINYIKFETGNLCMVTGGHNQGRVGIVTNIERHIGGYDIVHIRDSQNQQFSTRLVNVFIIGKSNKPWISLPKGAGLRLSIAEERDRRLEAK 1139
            RG KKHLKRL AP  W LDK+ G +AVRP  GPHK   S+PL+  LR  LKYAL Y+E  KIL Q+ V+VD  VRT  K+  GFMDV++IE+ +E+FR++YDTK R+++HRI   E+ +KLC+VK +  +   +P LTT DGRTIRYPDP +K NDT   +I+T KI + +KFE GNL  VTGG N GRVGI+ + ER  G  DI+HI+DS    F+TR+ NVF+IGK NK  +SLP GAG+RLSIAEERD+R+  K
Sbjct:    2 RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKALVSLPTGAGIRLSIAEERDKRMAQK 258
[Close]
BLAST of 40S ribosomal protein S4 vs. Ensembl Fly
Match: RpS4 (gene:FBgn0011284 transcript:FBtr0075885)

HSP 1 Score: 352.443 bits (903), Expect = 2.054e-121
Identity = 166/259 (64.09%), Postives = 200/259 (77.22%), Query Frame = 3 
Query:  363 QARGVKKHLKRLNAPKSWCLDKVSGNYAVRPRSGPHKQSNSIPLTYILRQNLKYALTYSEVPKILMQKTVKVDNVVRTDKKYSVGFMDVISIEKNSEFFRIIYDTKRRFLLHRIHVDESKYKLCRVKKLGVLAGDIPYLTTHDGRTIRYPDPSIKPNDTCQVDINTDKIINYIKFETGNLCMVTGGHNQGRVGIVTNIERHIGGYDIVHIRDSQNQQFSTRLVNVFIIGKSNKPWISLPKGAGLRLSIAEERDRRLEAK 1139
             ARG KKHLKRL APK+W LDK+ G +A RP +GPHK   S+PL   LR  LKYAL  +EV KI+MQ+ VKVD  VRTD  Y  G+MDVI++EK  EFFR++YD K RF++HRI  +E+KYKLC+VKK  + A  +P+L THDGRTIRYPDP I  ND+ QVDI + KI +YIKF++GNLCM+TGG N GRVG V N ERH G +DIVHI+DSQ   F+TRL NVFIIGK NKP+ISLPKG G++LSIAEERD+RL AK
Sbjct:    1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYISLPKGKGVKLSIAEERDKRLAAK 259
[Close]
BLAST of 40S ribosomal protein S4 vs. Ensembl Fly
Match: RpS4 (gene:FBgn0011284 transcript:FBtr0346390)

HSP 1 Score: 352.443 bits (903), Expect = 2.054e-121
Identity = 166/259 (64.09%), Postives = 200/259 (77.22%), Query Frame = 3 
Query:  363 QARGVKKHLKRLNAPKSWCLDKVSGNYAVRPRSGPHKQSNSIPLTYILRQNLKYALTYSEVPKILMQKTVKVDNVVRTDKKYSVGFMDVISIEKNSEFFRIIYDTKRRFLLHRIHVDESKYKLCRVKKLGVLAGDIPYLTTHDGRTIRYPDPSIKPNDTCQVDINTDKIINYIKFETGNLCMVTGGHNQGRVGIVTNIERHIGGYDIVHIRDSQNQQFSTRLVNVFIIGKSNKPWISLPKGAGLRLSIAEERDRRLEAK 1139
             ARG KKHLKRL APK+W LDK+ G +A RP +GPHK   S+PL   LR  LKYAL  +EV KI+MQ+ VKVD  VRTD  Y  G+MDVI++EK  EFFR++YD K RF++HRI  +E+KYKLC+VKK  + A  +P+L THDGRTIRYPDP I  ND+ QVDI + KI +YIKF++GNLCM+TGG N GRVG V N ERH G +DIVHI+DSQ   F+TRL NVFIIGK NKP+ISLPKG G++LSIAEERD+RL AK
Sbjct:    1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYISLPKGKGVKLSIAEERDKRLAAK 259
[Close]
BLAST of 40S ribosomal protein S4 vs. Ensembl Fly
Match: RpS4 (gene:FBgn0011284 transcript:FBtr0075884)

HSP 1 Score: 352.443 bits (903), Expect = 2.054e-121
Identity = 166/259 (64.09%), Postives = 200/259 (77.22%), Query Frame = 3 
Query:  363 QARGVKKHLKRLNAPKSWCLDKVSGNYAVRPRSGPHKQSNSIPLTYILRQNLKYALTYSEVPKILMQKTVKVDNVVRTDKKYSVGFMDVISIEKNSEFFRIIYDTKRRFLLHRIHVDESKYKLCRVKKLGVLAGDIPYLTTHDGRTIRYPDPSIKPNDTCQVDINTDKIINYIKFETGNLCMVTGGHNQGRVGIVTNIERHIGGYDIVHIRDSQNQQFSTRLVNVFIIGKSNKPWISLPKGAGLRLSIAEERDRRLEAK 1139
             ARG KKHLKRL APK+W LDK+ G +A RP +GPHK   S+PL   LR  LKYAL  +EV KI+MQ+ VKVD  VRTD  Y  G+MDVI++EK  EFFR++YD K RF++HRI  +E+KYKLC+VKK  + A  +P+L THDGRTIRYPDP I  ND+ QVDI + KI +YIKF++GNLCM+TGG N GRVG V N ERH G +DIVHI+DSQ   F+TRL NVFIIGK NKP+ISLPKG G++LSIAEERD+RL AK
Sbjct:    1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYISLPKGKGVKLSIAEERDKRLAAK 259
[Close]
BLAST of 40S ribosomal protein S4 vs. Ensembl Zebrafish
Match: rps4x (ribosomal protein S4 X-linked [Source:NCBI gene;Acc:449547])

HSP 1 Score: 338.576 bits (867), Expect = 7.526e-116
Identity = 156/260 (60.00%), Postives = 199/260 (76.54%), Query Frame = 3 
Query:  363 QARGVKKHLKRLNAPKSWCLDKVSGNYAVRPRSGPHKQSNSIPLTYILRQNLKYALTYSEVPKILMQKTVKVDNVVRTDKKYSVGFMDVISIEKNSEFFRIIYDTKRRFLLHRIHVDESKYKLCRVKKLGVLAGDIPYLTTHDGRTIRYPDPSIKPNDTCQVDINTDKIINYIKFETGNLCMVTGGHNQGRVGIVTNIERHIGGYDIVHIRDSQNQQFSTRLVNVFIIGKSNKPWISLPKGAGLRLSIAEERDRRLEAKK 1142
             ARG KKHLKR+ APK W LDK++G +A RP +GPHK    +PL   LR  LKYALT  EV KI MQ+ +K+D  VRTD  Y  GFMDV+SIEK  E FR+IYD K RF +HRI  +E+KYKLC+V+K+ +    IP+L THD RTIRYPDP IK NDT ++D++T KI ++IKFETGN+CMVTGG N GR+G++TN E+H G +D+VH++DS    F+TRL N+F+IGK NKPW+SLP+G G+RL+IAEERD+RL AK+
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPTGFMDVVSIEKTGENFRLIYDVKGRFTVHRITNEEAKYKLCKVRKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTIRIDLDTGKITDFIKFETGNMCMVTGGANLGRIGVITNREKHPGSFDVVHVKDSIGNSFATRLSNIFVIGKGNKPWVSLPRGKGVRLTIAEERDKRLAAKQ 260
[Close]
BLAST of 40S ribosomal protein S4 vs. Ensembl Xenopus
Match: rps4 (ribosomal protein S4 X-linked [Source:NCBI gene;Acc:394507])

HSP 1 Score: 345.51 bits (885), Expect = 2.520e-118
Identity = 160/260 (61.54%), Postives = 198/260 (76.15%), Query Frame = 3 
Query:  363 QARGVKKHLKRLNAPKSWCLDKVSGNYAVRPRSGPHKQSNSIPLTYILRQNLKYALTYSEVPKILMQKTVKVDNVVRTDKKYSVGFMDVISIEKNSEFFRIIYDTKRRFLLHRIHVDESKYKLCRVKKLGVLAGDIPYLTTHDGRTIRYPDPSIKPNDTCQVDINTDKIINYIKFETGNLCMVTGGHNQGRVGIVTNIERHIGGYDIVHIRDSQNQQFSTRLVNVFIIGKSNKPWISLPKGAGLRLSIAEERDRRLEAKK 1142
             ARG KKHLKR+ APK W LDK++G +A RP +GPHK    +PL   LR  LKYALT  EV KI MQ+ +K+D  VRTD  Y  GFMDVISIEK  E FR++YDTK RF +HRI  +E+KYKLC+V+K  V    IP+L THD RTIRYPDP IK NDT Q+D+ T KI ++IKF+TGNLCMVTGG N GR+G++TN ERH G +D+VH++D+    F+TRL N+F+IGK NKPWISLP+G G+RL+IAEERD+RL AK+
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKTWVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQ 260
[Close]
BLAST of 40S ribosomal protein S4 vs. Ensembl Xenopus
Match: rps4 (ribosomal protein S4 X-linked [Source:NCBI gene;Acc:394507])

HSP 1 Score: 345.51 bits (885), Expect = 2.520e-118
Identity = 160/260 (61.54%), Postives = 198/260 (76.15%), Query Frame = 3 
Query:  363 QARGVKKHLKRLNAPKSWCLDKVSGNYAVRPRSGPHKQSNSIPLTYILRQNLKYALTYSEVPKILMQKTVKVDNVVRTDKKYSVGFMDVISIEKNSEFFRIIYDTKRRFLLHRIHVDESKYKLCRVKKLGVLAGDIPYLTTHDGRTIRYPDPSIKPNDTCQVDINTDKIINYIKFETGNLCMVTGGHNQGRVGIVTNIERHIGGYDIVHIRDSQNQQFSTRLVNVFIIGKSNKPWISLPKGAGLRLSIAEERDRRLEAKK 1142
             ARG KKHLKR+ APK W LDK++G +A RP +GPHK    +PL   LR  LKYALT  EV KI MQ+ +K+D  VRTD  Y  GFMDVISIEK  E FR++YDTK RF +HRI  +E+KYKLC+V+K  V    IP+L THD RTIRYPDP IK NDT Q+D+ T KI ++IKF+TGNLCMVTGG N GR+G++TN ERH G +D+VH++D+    F+TRL N+F+IGK NKPWISLP+G G+RL+IAEERD+RL AK+
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKTWVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQ 260
[Close]
BLAST of 40S ribosomal protein S4 vs. Ensembl Mouse
Match: Rps4x (ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158])

HSP 1 Score: 343.584 bits (880), Expect = 1.002e-117
Identity = 160/260 (61.54%), Postives = 199/260 (76.54%), Query Frame = 3 
Query:  363 QARGVKKHLKRLNAPKSWCLDKVSGNYAVRPRSGPHKQSNSIPLTYILRQNLKYALTYSEVPKILMQKTVKVDNVVRTDKKYSVGFMDVISIEKNSEFFRIIYDTKRRFLLHRIHVDESKYKLCRVKKLGVLAGDIPYLTTHDGRTIRYPDPSIKPNDTCQVDINTDKIINYIKFETGNLCMVTGGHNQGRVGIVTNIERHIGGYDIVHIRDSQNQQFSTRLVNVFIIGKSNKPWISLPKGAGLRLSIAEERDRRLEAKK 1142
             ARG KKHLKR+ APK W LDK++G +A RP +GPHK    +PL   LR  LKYALT  EV KI MQ+ +K+D  VRTD  Y  GFMDVISI+K  E FR+IYDTK RF +HRI  +E+KYKLC+V+K+ V    IP+L THD RTIRYPDP IK NDT Q+D+ T KI ++IKF+TGNLCMVTGG N GR+G++TN ERH G +D+VH++D+    F+TRL N+F+IGK NKPWISLP+G G+RL+IAEERD+RL AK+
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQ 260
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BLAST of 40S ribosomal protein S4 vs. Ensembl Mouse
Match: Gm15013 (predicted gene 15013 [Source:MGI Symbol;Acc:MGI:3644991])

HSP 1 Score: 314.694 bits (805), Expect = 2.782e-106
Identity = 147/252 (58.33%), Postives = 187/252 (74.21%), Query Frame = 3 
Query:  363 QARGVKKHLKRLNAPKSWCLDKVSGNYAVRPRSGPHKQSNSIPLTYILRQNLKYALTYSEVPKILMQKTVKVDNVVRTDKKYSVGFMDVISIEKNSEFFRIIYDTKRRFLLHRIHVDESKYKLCRVKKLGVLAGDIPYLTTHDGRTIRYPDPSIKPNDTCQVDINTDKIINYIKFETGNLCMVTGGHNQGRVGIVTNIERHIGGYDIVHIRDSQNQQFSTRLVNVFIIGKSNKPWISLPKGAGLRLSIAEER 1118
             ARG KKHLKR+ APK W LDK++G +A  P +GPHK    +P    LR  LKYALT  EV KI MQ+ +K+D  +RT   Y  GFMDVISI+K  E FR+IYDTK RF +HRI  +E+KYKLC+V+K+ V    IP+L THD RT RYPDP IK N T Q+D+ T K+ ++IKF+TGNLCMVTGG N GR+G++TN ERH G +D+VH++D+  + F+TRL N+F+IGK NK WISLP+G G+RL+IAEER
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPSPSTGPHKLRECLPPIIFLRNRLKYALTGDEVKKICMQRFIKIDGKIRTGFIYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTTRYPDPLIKVNVTIQIDLETGKVTDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGKSFATRLSNIFVIGKGNKSWISLPRGKGIRLTIAEER 252
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BLAST of 40S ribosomal protein S4 vs. UniProt/SwissProt
Match: sp|Q4PMB3|RS4_IXOSC (40S ribosomal protein S4 OS=Ixodes scapularis OX=6945 GN=RpS4 PE=2 SV=1)

HSP 1 Score: 353.599 bits (906), Expect = 7.813e-121
Identity = 165/259 (63.71%), Postives = 205/259 (79.15%), Query Frame = 3 
Query:  363 QARGVKKHLKRLNAPKSWCLDKVSGNYAVRPRSGPHKQSNSIPLTYILRQNLKYALTYSEVPKILMQKTVKVDNVVRTDKKYSVGFMDVISIEKNSEFFRIIYDTKRRFLLHRIHVDESKYKLCRVKKLGVLAGDIPYLTTHDGRTIRYPDPSIKPNDTCQVDINTDKIINYIKFETGNLCMVTGGHNQGRVGIVTNIERHIGGYDIVHIRDSQNQQFSTRLVNVFIIGKSNKPWISLPKGAGLRLSIAEERDRRLEAK 1139
             ARG KKHLKRLNAPKSW LDK+ G +A RP +GPHK   S+PL  +LR  LKYALT +EV KI+ Q+ +KVD  VRTD  Y  GFMDV++IEK  EFFR++YD K RF LHRI  +E+KYKLCRVK++ V    +P+LTTHD RTIRYPDP IK NDT +VD+ T KI +YIKF++GN+CMVTGGHN GRVG++T+ ERH G +DIVH++DSQ   F+TRL  +F+IGKS KP+ISLP+G G++LS+AEERDRRL+AK
Sbjct:    1 MARGPKKHLKRLNAPKSWMLDKLGGVFAPRPSTGPHKLRESLPLIIMLRNRLKYALTGAEVKKIVKQRLIKVDGKVRTDTNYPAGFMDVVTIEKTGEFFRLLYDVKGRFTLHRITPEEAKYKLCRVKRVQVGPKGVPFLTTHDARTIRYPDPLIKVNDTVKVDLATGKIDDYIKFDSGNVCMVTGGHNLGRVGVITSRERHPGSFDIVHVKDSQGHSFATRLNYIFVIGKSTKPYISLPRGKGIKLSVAEERDRRLQAK 259
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BLAST of 40S ribosomal protein S4 vs. UniProt/SwissProt
Match: sp|P41042|RS4_DROME (40S ribosomal protein S4 OS=Drosophila melanogaster OX=7227 GN=RpS4 PE=1 SV=2)

HSP 1 Score: 352.443 bits (903), Expect = 2.059e-120
Identity = 166/259 (64.09%), Postives = 200/259 (77.22%), Query Frame = 3 
Query:  363 QARGVKKHLKRLNAPKSWCLDKVSGNYAVRPRSGPHKQSNSIPLTYILRQNLKYALTYSEVPKILMQKTVKVDNVVRTDKKYSVGFMDVISIEKNSEFFRIIYDTKRRFLLHRIHVDESKYKLCRVKKLGVLAGDIPYLTTHDGRTIRYPDPSIKPNDTCQVDINTDKIINYIKFETGNLCMVTGGHNQGRVGIVTNIERHIGGYDIVHIRDSQNQQFSTRLVNVFIIGKSNKPWISLPKGAGLRLSIAEERDRRLEAK 1139
             ARG KKHLKRL APK+W LDK+ G +A RP +GPHK   S+PL   LR  LKYAL  +EV KI+MQ+ VKVD  VRTD  Y  G+MDVI++EK  EFFR++YD K RF++HRI  +E+KYKLC+VKK  + A  +P+L THDGRTIRYPDP I  ND+ QVDI + KI +YIKF++GNLCM+TGG N GRVG V N ERH G +DIVHI+DSQ   F+TRL NVFIIGK NKP+ISLPKG G++LSIAEERD+RL AK
Sbjct:    1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYISLPKGKGVKLSIAEERDKRLAAK 259
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BLAST of 40S ribosomal protein S4 vs. UniProt/SwissProt
Match: sp|O62738|RS4X_MONDO (40S ribosomal protein S4, X isoform OS=Monodelphis domestica OX=13616 GN=RPS4X PE=2 SV=3)

HSP 1 Score: 346.665 bits (888), Expect = 3.891e-118
Identity = 160/263 (60.84%), Postives = 200/263 (76.05%), Query Frame = 3 
Query:  363 QARGVKKHLKRLNAPKSWCLDKVSGNYAVRPRSGPHKQSNSIPLTYILRQNLKYALTYSEVPKILMQKTVKVDNVVRTDKKYSVGFMDVISIEKNSEFFRIIYDTKRRFLLHRIHVDESKYKLCRVKKLGVLAGDIPYLTTHDGRTIRYPDPSIKPNDTCQVDINTDKIINYIKFETGNLCMVTGGHNQGRVGIVTNIERHIGGYDIVHIRDSQNQQFSTRLVNVFIIGKSNKPWISLPKGAGLRLSIAEERDRRLEAKKLNA 1151
             ARG KKHLKR+ APK W LDK++G +A RP +GPHK    +PL   LR  LKYALT  EV KI MQ+ +K+D  VRTD  Y VGFMDVISIEK  E FR++YDTK RF +HRI  +E+KYKLC+V+K  V    IP+L THD RTIRYPDP IK NDT Q+D+ T KI ++IKF+TGN+CMVTGG N GR+G++TN E+H G +D+VH++D+    F+TRL N+F+IGK NKPWISLP+G G+RL+IAEERD+RL AK+ N 
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDTTYPVGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKTFVGTKAIPHLVTHDARTIRYPDPLIKMNDTIQIDLETGKITDFIKFDTGNMCMVTGGANLGRIGVITNREKHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQNNG 263
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BLAST of 40S ribosomal protein S4 vs. UniProt/SwissProt
Match: sp|P47836|RS4_CHICK (40S ribosomal protein S4 OS=Gallus gallus OX=9031 GN=RPS4 PE=2 SV=2)

HSP 1 Score: 346.665 bits (888), Expect = 4.435e-118
Identity = 160/260 (61.54%), Postives = 199/260 (76.54%), Query Frame = 3 
Query:  363 QARGVKKHLKRLNAPKSWCLDKVSGNYAVRPRSGPHKQSNSIPLTYILRQNLKYALTYSEVPKILMQKTVKVDNVVRTDKKYSVGFMDVISIEKNSEFFRIIYDTKRRFLLHRIHVDESKYKLCRVKKLGVLAGDIPYLTTHDGRTIRYPDPSIKPNDTCQVDINTDKIINYIKFETGNLCMVTGGHNQGRVGIVTNIERHIGGYDIVHIRDSQNQQFSTRLVNVFIIGKSNKPWISLPKGAGLRLSIAEERDRRLEAKK 1142
             ARG KKHLKR+ APK W LDK++G +A RP +GPHK    +PL   LR  LKYALT  EV KI MQ+ +K+D  VRTD  Y  GFMDVISIEK  E FR++YDTK RF +HRI  +E+KYKLC+V+K+ V    IP+L THD RTIRYPDP IK NDT Q+D+ T KI ++IKF+TGNLCMVTGG N GR+G++TN ERH G +D+VH++D+    F+TRL N+F+IGK NKPWISLP+G G+RL+IAEERD+RL AK+
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQ 260
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BLAST of 40S ribosomal protein S4 vs. UniProt/SwissProt
Match: sp|Q6PBC4|RS4_XENTR (40S ribosomal protein S4 OS=Xenopus tropicalis OX=8364 GN=rps4 PE=2 SV=3)

HSP 1 Score: 345.51 bits (885), Expect = 1.335e-117
Identity = 160/260 (61.54%), Postives = 198/260 (76.15%), Query Frame = 3 
Query:  363 QARGVKKHLKRLNAPKSWCLDKVSGNYAVRPRSGPHKQSNSIPLTYILRQNLKYALTYSEVPKILMQKTVKVDNVVRTDKKYSVGFMDVISIEKNSEFFRIIYDTKRRFLLHRIHVDESKYKLCRVKKLGVLAGDIPYLTTHDGRTIRYPDPSIKPNDTCQVDINTDKIINYIKFETGNLCMVTGGHNQGRVGIVTNIERHIGGYDIVHIRDSQNQQFSTRLVNVFIIGKSNKPWISLPKGAGLRLSIAEERDRRLEAKK 1142
             ARG KKHLKR+ APK W LDK++G +A RP +GPHK    +PL   LR  LKYALT  EV KI MQ+ +K+D  VRTD  Y  GFMDVISIEK  E FR++YDTK RF +HRI  +E+KYKLC+V+K  V    IP+L THD RTIRYPDP IK NDT Q+D+ T KI ++IKF+TGNLCMVTGG N GR+G++TN ERH G +D+VH++D+    F+TRL N+F+IGK NKPWISLP+G G+RL+IAEERD+RL AK+
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKTWVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQ 260
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BLAST of 40S ribosomal protein S4 vs. TrEMBL
Match: A0A504YB93 (40S ribosomal protein S4 OS=Fasciola gigantica OX=46835 GN=FGIG_08067 PE=3 SV=1)

HSP 1 Score: 366.696 bits (940), Expect = 1.905e-123
Identity = 168/262 (64.12%), Postives = 209/262 (79.77%), Query Frame = 3 
Query:  366 ARGVKKHLKRLNAPKSWCLDKVSGNYAVRPRSGPHKQSNSIPLTYILRQNLKYALTYSEVPKILMQKTVKVDNVVRTDKKYSVGFMDVISIEKNSEFFRIIYDTKRRFLLHRIHVDESKYKLCRVKKLGVLAGDIPYLTTHDGRTIRYPDPSIKPNDTCQVDINTDKIINYIKFETGNLCMVTGGHNQGRVGIVTNIERHIGGYDIVHIRDSQNQQFSTRLVNVFIIGKSNKPWISLPKGAGLRLSIAEERDRRLEAKKLNA 1151
             RG++KHLKRLNAPK W LDK+ GN+A RP +GPHK    +PL+  +R  LK+AL Y+E  KIL QK +KVD  VRTDKKY  GFMDVISIEK +E FR++YDTK RF +HRIH +E+KYKLC+V+K+ + +G +PYL THDGRTIRYPDP+IKPNDT QVDI T K++N+IKFE GN+CMVTGG N GRVG +T  ERH G  ++VH+RDS   QF TRL N+FIIGKSNK WISLP+G G+RLSI E+R+RR++A++L A
Sbjct:    3 VRGIRKHLKRLNAPKHWMLDKLGGNFAPRPSTGPHKLRECLPLSIFIRNRLKFALNYNECTKILAQKLIKVDGKVRTDKKYPAGFMDVISIEKTNEHFRLVYDTKGRFAIHRIHPEEAKYKLCKVRKVMIASGGVPYLVTHDGRTIRYPDPNIKPNDTIQVDIATGKVLNHIKFEPGNICMVTGGRNLGRVGTITQWERHPGSVEMVHVRDSTGHQFVTRLNNIFIIGKSNKAWISLPRGKGIRLSIIEDRERRIKARRLTA 264
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BLAST of 40S ribosomal protein S4 vs. TrEMBL
Match: A0A095BXH7 (40S ribosomal protein S4 (Fragment) OS=Schistosoma haematobium OX=6185 GN=MS3_01902 PE=3 SV=1)

HSP 1 Score: 363.229 bits (931), Expect = 3.423e-122
Identity = 172/260 (66.15%), Postives = 204/260 (78.46%), Query Frame = 3 
Query:  366 ARGVKKHLKRLNAPKSWCLDKVSGNYAVRPRSGPHKQSNSIPLTYILRQNLKYALTYSEVPKILMQKTVKVDNVVRTDKKYSVGFMDVISIEKNSEFFRIIYDTKRRFLLHRIHVDESKYKLCRVKKLGVLAGDIPYLTTHDGRTIRYPDPSIKPNDTCQVDINTDKIINYIKFETGNLCMVTGGHNQGRVGIVTNIERHIGGYDIVHIRDSQNQQFSTRLVNVFIIGKSNKPWISLPKGAGLRLSIAEERDRRLEAKKL 1145
             RG KKHLKRLNAPK W LDK+ GN+A RP +GPHK    +PL+  LR  LKYALTY+E  KIL Q+ VKVD  VRTDKKY  GFMDVI+IEK +E FR+IYDTK RF + RIH DE+KYKLC+V+K+ V  G +PY+ THD RTIRYPDP+IKPNDT QVDI T K++N+IKFE GN+CMVTGG N GRVG +T  ERH G  ++VH+RDS   QF TRL N+FIIGKSNKPWISLPK  G+RLSI EERD+R+ A++L
Sbjct:    1 VRGNKKHLKRLNAPKHWMLDKLGGNFAPRPSTGPHKLRECLPLSIFLRNRLKYALTYTECTKILAQRLVKVDGRVRTDKKYPAGFMDVITIEKTNEHFRLIYDTKGRFAIQRIHPDEAKYKLCKVRKVLVGRGGVPYIVTHDARTIRYPDPNIKPNDTIQVDIATGKVLNHIKFEPGNMCMVTGGRNLGRVGTITQWERHPGSVEMVHVRDSTGHQFVTRLNNIFIIGKSNKPWISLPKNRGIRLSIIEERDKRIRARRL 260
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BLAST of 40S ribosomal protein S4 vs. TrEMBL
Match: A0A183QSN3 (40S ribosomal protein S4 OS=Schistosoma rodhaini OX=6188 PE=3 SV=1)

HSP 1 Score: 362.073 bits (928), Expect = 1.207e-121
Identity = 172/260 (66.15%), Postives = 203/260 (78.08%), Query Frame = 3 
Query:  366 ARGVKKHLKRLNAPKSWCLDKVSGNYAVRPRSGPHKQSNSIPLTYILRQNLKYALTYSEVPKILMQKTVKVDNVVRTDKKYSVGFMDVISIEKNSEFFRIIYDTKRRFLLHRIHVDESKYKLCRVKKLGVLAGDIPYLTTHDGRTIRYPDPSIKPNDTCQVDINTDKIINYIKFETGNLCMVTGGHNQGRVGIVTNIERHIGGYDIVHIRDSQNQQFSTRLVNVFIIGKSNKPWISLPKGAGLRLSIAEERDRRLEAKKL 1145
             RG +KHLKRLNAPK W LDK+ GN+A RP +GPHK    +PL   LR  LKYALTY+E  KIL Q+ VKVD  VRTDKKY  GFMDVI+IEK +E FR+IYDTK RF + RIH DE+KYKLC+VKK+ V  G +PY+ THD RTIRYPDP+IKPNDT QVDI T K++N+IKFE GN+CMVTGG N GRVG +T  ERH G  ++VH+RDS   QF TRL N+FIIGKSNKPWISLPK  G+RLSI EERD+R+ A++L
Sbjct:    3 VRGNRKHLKRLNAPKHWMLDKLGGNFAPRPSTGPHKLRECLPLCIFLRNRLKYALTYTECTKILAQRLVKVDGRVRTDKKYPAGFMDVITIEKTNEHFRLIYDTKGRFAIQRIHPDEAKYKLCKVKKVLVGHGGVPYIVTHDARTIRYPDPNIKPNDTIQVDIATGKVLNHIKFEPGNMCMVTGGRNLGRVGTITQWERHPGSVEMVHVRDSTGHQFVTRLNNIFIIGKSNKPWISLPKNRGIRLSIIEERDKRIRARRL 262
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BLAST of 40S ribosomal protein S4 vs. TrEMBL
Match: G4VS96 (40S ribosomal protein S4 OS=Schistosoma mansoni OX=6183 GN=Smp_011570.1 PE=3 SV=1)

HSP 1 Score: 362.073 bits (928), Expect = 1.207e-121
Identity = 172/260 (66.15%), Postives = 203/260 (78.08%), Query Frame = 3 
Query:  366 ARGVKKHLKRLNAPKSWCLDKVSGNYAVRPRSGPHKQSNSIPLTYILRQNLKYALTYSEVPKILMQKTVKVDNVVRTDKKYSVGFMDVISIEKNSEFFRIIYDTKRRFLLHRIHVDESKYKLCRVKKLGVLAGDIPYLTTHDGRTIRYPDPSIKPNDTCQVDINTDKIINYIKFETGNLCMVTGGHNQGRVGIVTNIERHIGGYDIVHIRDSQNQQFSTRLVNVFIIGKSNKPWISLPKGAGLRLSIAEERDRRLEAKKL 1145
             RG +KHLKRLNAPK W LDK+ GN+A RP +GPHK    +PL   LR  LKYALTY+E  KIL Q+ VKVD  VRTDKKY  GFMDVI+IEK +E FR+IYDTK RF + RIH DE+KYKLC+VKK+ V  G +PY+ THD RTIRYPDP+IKPNDT QVDI T K++N+IKFE GN+CMVTGG N GRVG +T  ERH G  ++VH+RDS   QF TRL N+FIIGKSNKPWISLPK  G+RLSI EERD+R+ A++L
Sbjct:    3 VRGNRKHLKRLNAPKHWMLDKLGGNFAPRPSTGPHKLRECLPLCIFLRNRLKYALTYTECTKILAQRLVKVDGRVRTDKKYPAGFMDVITIEKTNEHFRLIYDTKGRFAIQRIHPDEAKYKLCKVKKVLVGHGGVPYIVTHDARTIRYPDPNIKPNDTIQVDIATGKVLNHIKFEPGNMCMVTGGRNLGRVGTITQWERHPGSVEMVHVRDSTGHQFVTRLNNIFIIGKSNKPWISLPKNRGIRLSIIEERDKRIRARRL 262
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BLAST of 40S ribosomal protein S4 vs. TrEMBL
Match: A0A3S3Q3S4 (S4 RNA-binding domain-containing protein (Fragment) OS=Dinothrombium tinctorium OX=1965070 GN=B4U79_08775 PE=3 SV=1)

HSP 1 Score: 361.688 bits (927), Expect = 1.225e-121
Identity = 168/258 (65.12%), Postives = 208/258 (80.62%), Query Frame = 3 
Query:  366 ARGVKKHLKRLNAPKSWCLDKVSGNYAVRPRSGPHKQSNSIPLTYILRQNLKYALTYSEVPKILMQKTVKVDNVVRTDKKYSVGFMDVISIEKNSEFFRIIYDTKRRFLLHRIHVDESKYKLCRVKKLGVLAGDIPYLTTHDGRTIRYPDPSIKPNDTCQVDINTDKIINYIKFETGNLCMVTGGHNQGRVGIVTNIERHIGGYDIVHIRDSQNQQFSTRLVNVFIIGKSNKPWISLPKGAGLRLSIAEERDRRLEAK 1139
            ARG KKHLKRLNAPKSW LDK+ G +A RP +GPHK   S+PL  ILR  LKYALT SEV KI+MQ+T+KVD  VRTD  +  GFMDVI+IEK  +FFR++YD K RF+LH+I  +E+ YKLCRV+K+     +IP+L THDGRTIRYPDP IKP+DT ++D+ T KI+++IKFETGNLCMVTGGHN GRVG++T+ ERH G +DIVH++DSQ   F+TRL  +F+IGKS KP+ISLPKG G+RLS+AEERD+RL AK
Sbjct:    1 ARGPKKHLKRLNAPKSWMLDKLGGVFAPRPSTGPHKLRESLPLVIILRNRLKYALTNSEVTKIVMQRTIKVDGKVRTDTNFPAGFMDVITIEKTGDFFRLLYDVKGRFILHKITQEEANYKLCRVRKVQTGPKNIPFLVTHDGRTIRYPDPLIKPHDTIRLDLATGKILDFIKFETGNLCMVTGGHNLGRVGVITSRERHPGSFDIVHVKDSQGHSFATRLNYIFVIGKSTKPYISLPKGKGVRLSVAEERDKRLAAK 258
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BLAST of 40S ribosomal protein S4 vs. Ensembl Cavefish
Match: rps4x (ribosomal protein S4 X-linked [Source:NCBI gene;Acc:103022029])

HSP 1 Score: 334.724 bits (857), Expect = 2.090e-114
Identity = 152/260 (58.46%), Postives = 196/260 (75.38%), Query Frame = 3 
Query:  363 QARGVKKHLKRLNAPKSWCLDKVSGNYAVRPRSGPHKQSNSIPLTYILRQNLKYALTYSEVPKILMQKTVKVDNVVRTDKKYSVGFMDVISIEKNSEFFRIIYDTKRRFLLHRIHVDESKYKLCRVKKLGVLAGDIPYLTTHDGRTIRYPDPSIKPNDTCQVDINTDKIINYIKFETGNLCMVTGGHNQGRVGIVTNIERHIGGYDIVHIRDSQNQQFSTRLVNVFIIGKSNKPWISLPKGAGLRLSIAEERDRRLEAKK 1142
             ARG KKHLKR+ AP  W LDK++G +A RP +GPHK    +PL   LR  LKYALT  EV KI MQ+ +KVD  VRTD  Y  GFMDV+SIEK  E FR++YD K RF +HRI  +E+KYKLC+V+K+ +    IP+L THD RTIRYPDP IK NDT ++D+ T KI +++KF+TGN+CMVTGG N GR+G++ N ERH G +D+VH++D+    F+TRL N+F+IGK NKPWIS+P+G G+RL+IAEERD+RL AK+
Sbjct:    1 MARGAKKHLKRVAAPNHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRYIKVDGKVRTDITYPTGFMDVVSIEKTGENFRMVYDMKGRFTVHRITNEEAKYKLCKVRKILIGTKGIPHLVTHDARTIRYPDPMIKANDTIRIDLETGKITDFVKFDTGNICMVTGGANLGRIGVIVNRERHPGSFDVVHVKDTTGNSFATRLSNIFVIGKGNKPWISIPRGKGIRLTIAEERDKRLAAKQ 260
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BLAST of 40S ribosomal protein S4 vs. Ensembl Sea Lamprey
Match: rps4x (ribosomal protein S4 X-linked [Source:NCBI gene;Acc:449547])

HSP 1 Score: 350.132 bits (897), Expect = 4.362e-121
Identity = 161/263 (61.22%), Postives = 201/263 (76.43%), Query Frame = 3 
Query:  363 QARGVKKHLKRLNAPKSWCLDKVSGNYAVRPRSGPHKQSNSIPLTYILRQNLKYALTYSEVPKILMQKTVKVDNVVRTDKKYSVGFMDVISIEKNSEFFRIIYDTKRRFLLHRIHVDESKYKLCRVKKLGVLAGDIPYLTTHDGRTIRYPDPSIKPNDTCQVDINTDKIINYIKFETGNLCMVTGGHNQGRVGIVTNIERHIGGYDIVHIRDSQNQQFSTRLVNVFIIGKSNKPWISLPKGAGLRLSIAEERDRRLEAKKLNA 1151
            QARG KKHLKRL APK W LDK++G +A RP +GPHK    +PL   LR  LKYALT  EV KI MQ+ +KVD  VRTD  Y  GFMDVI+IEK  E FR+IYDTK RF +HRI  +E+KYKLC+VKK+ V    IP+L THD RTIRYPDP IK NDT Q+D+   KI ++IKF+TGNLCMVTGG N GR+G++TN ERH+G +D+VH++D+    F+TRL N+F+IGK  KPW+SLP+G G+RL+IAEERD+RL AK++ +
Sbjct:    1 QARGPKKHLKRLAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKVDGKVRTDSTYPAGFMDVITIEKTGEHFRLIYDTKGRFAVHRITAEEAKYKLCKVKKVRVGTKGIPFLVTHDARTIRYPDPLIKVNDTVQLDLEAGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHLGSFDVVHVKDANGNTFATRLGNIFVIGKGQKPWVSLPRGKGIRLTIAEERDKRLAAKQVAS 263
[Close]
BLAST of 40S ribosomal protein S4 vs. Ensembl Sea Lamprey
Match: rps4x (ribosomal protein S4 X-linked [Source:NCBI gene;Acc:449547])

HSP 1 Score: 147.902 bits (372), Expect = 1.052e-43
Identity = 70/149 (46.98%), Postives = 96/149 (64.43%), Query Frame = 3 
Query:  678 KRRFLLHRIHVDESKYKLCRVKKLGVLAGDIPYLTTHDGRTIRYPDPSIKPNDTCQVDINTDKIINYIKFETGNLCMVTGGHNQGRVGIVTNIERHIGGYDIVHIRDSQNQQFSTRLVNVFIIGKSNKPWISLPKGAGLRLSIAEERDR 1124
            K RF +H+I  + +K K  RV   G     I  L TH   TIRYPD  IK ND  Q+D+   KI ++IKF++ NLCMVTGG N GR+G++ N ER +G   + H++D+    F+TR   +F++GK  KPW+SLP+G  LRL+I EERD+
Sbjct:    1 KGRFAVHKITANGAKVKKGRVGTKG-----ITLLVTHHA-TIRYPDALIKVNDAAQLDLEAGKITDFIKFDSANLCMVTGGANLGRIGVIANRERQLGSLAVAHVKDANGNTFATRPGIIFVVGKGQKPWVSLPRGKALRLTIDEERDQ 143
[Close]
BLAST of 40S ribosomal protein S4 vs. Ensembl Yeast
Match: RPS4A (Protein component of the small (40S) ribosomal subunit; mutation affects 20S pre-rRNA processing; homologous to mammalian ribosomal protein S4, no bacterial homolog; RPS4A has a paralog, RPS4B, that arose from the whole genome duplication [Source:SGD;Acc:S000003906])

HSP 1 Score: 310.842 bits (795), Expect = 8.142e-106
Identity = 150/260 (57.69%), Postives = 189/260 (72.69%), Query Frame = 3 
Query:  366 ARGVKKHLKRLNAPKSWCLDKVSGNYAVRPRSGPHKQSNSIPLTYILRQNLKYALTYSEVPKILMQKTVKVDNVVRTDKKYSVGFMDVISIEKNSEFFRIIYDTKRRFLLHRIHVDESKYKLCRVKKLGVLAGDIPYLTTHDGRTIRYPDPSIKPNDTCQVDINTDKIINYIKFETGNLCMVTGGHNQGRVGIVTNIERHIGGYDIVHIRDSQNQQFSTRLVNVFIIGKSNKPWISLPKGAGLRLSIAEERDRRLEAKKL 1145
            ARG KKHLKRL AP  W LDK+SG YA RP +GPHK   S+PL   LR  LKYAL   EV  ILMQ+ VKVD  VRTD  Y  GFMDVI+++  +E FR++YD K RF +HRI  +E+ YKL +VKK+ +    +PY+ THDGRTIRYPDP+IK NDT ++D+ + KI ++IKF+ G L  VTGG N GR+G + + ERH GG+D+VHI+DS +  F TRL NVF+IG+  KP+ISLPKG G++LSIAEERDRR   + L
Sbjct:    2 ARGPKKHLKRLAAPHHWLLDKLSGCYAPRPSAGPHKLRESLPLIVFLRNRLKYALNGREVKAILMQRHVKVDGKVRTDTTYPAGFMDVITLDATNENFRLVYDVKGRFAVHRITDEEASYKLGKVKKVQLGKKGVPYVVTHDGRTIRYPDPNIKVNDTVKIDLASGKITDFIKFDAGKLVYVTGGRNLGRIGTIVHKERHDGGFDLVHIKDSLDNTFVTRLNNVFVIGEQGKPYISLPKGKGIKLSIAEERDRRRAQQGL 261
[Close]
BLAST of 40S ribosomal protein S4 vs. Ensembl Yeast
Match: RPS4B (Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S4, no bacterial homolog; RPS4B has a paralog, RPS4A, that arose from the whole genome duplication [Source:SGD;Acc:S000001246])

HSP 1 Score: 310.842 bits (795), Expect = 8.142e-106
Identity = 150/260 (57.69%), Postives = 189/260 (72.69%), Query Frame = 3 
Query:  366 ARGVKKHLKRLNAPKSWCLDKVSGNYAVRPRSGPHKQSNSIPLTYILRQNLKYALTYSEVPKILMQKTVKVDNVVRTDKKYSVGFMDVISIEKNSEFFRIIYDTKRRFLLHRIHVDESKYKLCRVKKLGVLAGDIPYLTTHDGRTIRYPDPSIKPNDTCQVDINTDKIINYIKFETGNLCMVTGGHNQGRVGIVTNIERHIGGYDIVHIRDSQNQQFSTRLVNVFIIGKSNKPWISLPKGAGLRLSIAEERDRRLEAKKL 1145
            ARG KKHLKRL AP  W LDK+SG YA RP +GPHK   S+PL   LR  LKYAL   EV  ILMQ+ VKVD  VRTD  Y  GFMDVI+++  +E FR++YD K RF +HRI  +E+ YKL +VKK+ +    +PY+ THDGRTIRYPDP+IK NDT ++D+ + KI ++IKF+ G L  VTGG N GR+G + + ERH GG+D+VHI+DS +  F TRL NVF+IG+  KP+ISLPKG G++LSIAEERDRR   + L
Sbjct:    2 ARGPKKHLKRLAAPHHWLLDKLSGCYAPRPSAGPHKLRESLPLIVFLRNRLKYALNGREVKAILMQRHVKVDGKVRTDTTYPAGFMDVITLDATNENFRLVYDVKGRFAVHRITDEEASYKLGKVKKVQLGKKGVPYVVTHDGRTIRYPDPNIKVNDTVKIDLASGKITDFIKFDAGKLVYVTGGRNLGRIGTIVHKERHDGGFDLVHIKDSLDNTFVTRLNNVFVIGEQGKPYISLPKGKGIKLSIAEERDRRRAQQGL 261
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BLAST of 40S ribosomal protein S4 vs. Ensembl Nematostella
Match: EDO33547 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SRV8])

HSP 1 Score: 335.109 bits (858), Expect = 6.993e-115
Identity = 154/259 (59.46%), Postives = 196/259 (75.68%), Query Frame = 3 
Query:  363 QARGVKKHLKRLNAPKSWCLDKVSGNYAVRPRSGPHKQSNSIPLTYILRQNLKYALTYSEVPKILMQKTVKVDNVVRTDKKYSVGFMDVISIEKNSEFFRIIYDTKRRFLLHRIHVDESKYKLCRVKKLGVLAGDIPYLTTHDGRTIRYPDPSIKPNDTCQVDINTDKIINYIKFETGNLCMVTGGHNQGRVGIVTNIERHIGGYDIVHIRDSQNQQFSTRLVNVFIIGKSNKPWISLPKGAGLRLSIAEERDRRLEAK 1139
             ARG KKH+KRLNAPK W LDK+SG +A RP +GPHK    +PL   LR  LKYAL   EV KI+ Q+ +K+D  VRTD  Y  GFMDV++I+K  E FR++YD K RF +HRI  +E+KYKL RV+++ V A  +PY+ THD RTIRYPDP+IK NDT  +DI T K+I+YIKF+TGN+ MV GG N GRVG+VT+ E+H G +DIVH++D+   QF+TRL N+F+IGK NKP++SLPKG G+RLSIAEERDRR+  K
Sbjct:    1 MARGPKKHMKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEEVKKIVKQRLIKIDGKVRTDTTYPAGFMDVVTIDKTGENFRLLYDVKGRFAVHRITAEEAKYKLGRVRRVDVGAKGVPYIVTHDARTIRYPDPNIKVNDTVVIDIKTGKVIDYIKFDTGNMAMVVGGRNMGRVGMVTHREKHAGSFDIVHVKDATGHQFATRLTNIFVIGKGNKPYVSLPKGKGVRLSIAEERDRRIAEK 259
[Close]
BLAST of 40S ribosomal protein S4 vs. Ensembl Medaka
Match: rps4x (ribosomal protein S4 X-linked [Source:NCBI gene;Acc:101162004])

HSP 1 Score: 341.658 bits (875), Expect = 4.014e-117
Identity = 158/260 (60.77%), Postives = 198/260 (76.15%), Query Frame = 3 
Query:  363 QARGVKKHLKRLNAPKSWCLDKVSGNYAVRPRSGPHKQSNSIPLTYILRQNLKYALTYSEVPKILMQKTVKVDNVVRTDKKYSVGFMDVISIEKNSEFFRIIYDTKRRFLLHRIHVDESKYKLCRVKKLGVLAGDIPYLTTHDGRTIRYPDPSIKPNDTCQVDINTDKIINYIKFETGNLCMVTGGHNQGRVGIVTNIERHIGGYDIVHIRDSQNQQFSTRLVNVFIIGKSNKPWISLPKGAGLRLSIAEERDRRLEAKK 1142
             ARG KKHLKR+ APK W LDK++G +A RP +GPHK    +PL   LR  LKYALT  EV KI MQ+ +K+D  VRTD  Y  GFMDVISIEK  E FR+IYD K RF +HRI  +E+KYKLC+V+K+ +    IP+L THD RTIRYPDP IK NDT ++D+ T KI ++IKF+TGNLCMVTGG N GR+G++TN ERH G +D+VH++DS    F+TRL N+F+IGK NKPW+SLP+G G+RL+IAEERD+RL AK+
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDVTYPAGFMDVISIEKTGEHFRLIYDVKGRFTVHRITGEEAKYKLCKVRKIIIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGNSFATRLSNIFVIGKGNKPWVSLPRGKGIRLTIAEERDKRLAAKQ 260
[Close]
BLAST of 40S ribosomal protein S4 vs. Planmine SMEST
Match: SMESG000026320.1 (SMESG000026320.1)

HSP 1 Score: 541.191 bits (1393), Expect = 0.000e+0
Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 3 
Query:  366 ARGVKKHLKRLNAPKSWCLDKVSGNYAVRPRSGPHKQSNSIPLTYILRQNLKYALTYSEVPKILMQKTVKVDNVVRTDKKYSVGFMDVISIEKNSEFFRIIYDTKRRFLLHRIHVDESKYKLCRVKKLGVLAGDIPYLTTHDGRTIRYPDPSIKPNDTCQVDINTDKIINYIKFETGNLCMVTGGHNQGRVGIVTNIERHIGGYDIVHIRDSQNQQFSTRLVNVFIIGKSNKPWISLPKGAGLRLSIAEERDRRLEAKKLNA 1151
            ARGVKKHLKRLNAPKSWCLDKVSGNYAVRPRSGPHKQSNSIPLTYILRQNLKYALTYSEVPKILMQKTVKVDNVVRTDKKYSVGFMDVISIEKNSEFFRIIYDTKRRFLLHRIHVDESKYKLCRVKKLGVLAGDIPYLTTHDGRTIRYPDPSIKPNDTCQVDINTDKIINYIKFETGNLCMVTGGHNQGRVGIVTNIERHIGGYDIVHIRDSQNQQFSTRLVNVFIIGKSNKPWISLPKGAGLRLSIAEERDRRLEAKKLNA
Sbjct:    2 ARGVKKHLKRLNAPKSWCLDKVSGNYAVRPRSGPHKQSNSIPLTYILRQNLKYALTYSEVPKILMQKTVKVDNVVRTDKKYSVGFMDVISIEKNSEFFRIIYDTKRRFLLHRIHVDESKYKLCRVKKLGVLAGDIPYLTTHDGRTIRYPDPSIKPNDTCQVDINTDKIINYIKFETGNLCMVTGGHNQGRVGIVTNIERHIGGYDIVHIRDSQNQQFSTRLVNVFIIGKSNKPWISLPKGAGLRLSIAEERDRRLEAKKLNA 263
[Close]
BLAST of 40S ribosomal protein S4 vs. Planmine SMEST
Match: SMESG000063810.1 (SMESG000063810.1)

HSP 1 Score: 238.424 bits (607), Expect = 4.652e-77
Identity = 122/239 (51.05%), Postives = 164/239 (68.62%), Query Frame = 3 
Query:  375 VKKHLKRLNAPKSWCLDKVSGNYAVRPRSGPHKQSNSIPLTYILRQNLKYALTYSEVPKILMQKTVKVDNVVRTDKKYSVGFMDVISIEKNSEFFRIIYDTKRRFLLHRIHVDESKYKLCRVKKLGVLAGDIPYLTTHDGRTIRYPDPSIKPNDTCQVDINTDKIINYIKFETGNLCMVTGGHNQGRVGIVTNIERHIGGYDIVHIRDSQNQQFSTRLVNVFIIGKSNKPWISLPKGAG 1091
            V  +L + N  K W LDKV GNY+ +P S     +   PL+  L+  LK  L+++EVP I+ +K VKVDN +RT++ + VGFMDVI+IEK S  FRI+YD+K RF LH+IH +ES+YKLC+VK+LG L GD+ +LTTHDGRT   PDP I+ NDT +VD+N+DKII+YIK + GNLCMVT G N G VG + N E++  G  +  I++ Q+Q       + FIIGK + PW+ LPK  G
Sbjct:    5 VDNNLTQSNKSKLWSLDKVGGNYSPKPSSCSRNLNECSPLSNFLKIKLKNYLSHNEVPIIIQKKLVKVDNKIRTEQNFPVGFMDVITIEKISGIFRILYDSKGRFALHKIHDNESQYKLCKVKELGSLNGDVSFLTTHDGRTFMNPDPLIEVNDTVKVDLNSDKIIDYIKVQIGNLCMVTFGPNHGVVGNIINKEKNFDGNVLYKIKNRQDQIIVCNSNSAFIIGK-DTPWVDLPKQYG 242
The following BLAST results are available for this feature:
BLAST of 40S ribosomal protein S4 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 4
Match NameE-valueIdentityDescription
RPS4Y14.848e-11861.15ribosomal protein S4 Y-linked 1 [Source:HGNC Symbo... [more]
RPS4X1.459e-11761.54ribosomal protein S4 X-linked [Source:HGNC Symbol;... [more]
RPS4Y19.200e-11761.09ribosomal protein S4 Y-linked 1 [Source:HGNC Symbo... [more]
RPS4Y22.184e-11158.85ribosomal protein S4 Y-linked 2 [Source:HGNC Symbo... [more]
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BLAST of 40S ribosomal protein S4 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rps-44.222e-10456.8140S ribosomal protein S4 [Source:UniProtKB/Swiss-... [more]
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BLAST of 40S ribosomal protein S4 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 3
Match NameE-valueIdentityDescription
RpS42.054e-12164.09gene:FBgn0011284 transcript:FBtr0075885[more]
RpS42.054e-12164.09gene:FBgn0011284 transcript:FBtr0346390[more]
RpS42.054e-12164.09gene:FBgn0011284 transcript:FBtr0075884[more]
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BLAST of 40S ribosomal protein S4 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rps4x7.526e-11660.00ribosomal protein S4 X-linked [Source:NCBI gene;Ac... [more]
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BLAST of 40S ribosomal protein S4 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 2
Match NameE-valueIdentityDescription
rps42.520e-11861.54ribosomal protein S4 X-linked [Source:NCBI gene;Ac... [more]
rps42.520e-11861.54ribosomal protein S4 X-linked [Source:NCBI gene;Ac... [more]
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BLAST of 40S ribosomal protein S4 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 2
Match NameE-valueIdentityDescription
Rps4x1.002e-11761.54ribosomal protein S4, X-linked [Source:MGI Symbol;... [more]
Gm150132.782e-10658.33predicted gene 15013 [Source:MGI Symbol;Acc:MGI:36... [more]
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BLAST of 40S ribosomal protein S4 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q4PMB3|RS4_IXOSC7.813e-12163.7140S ribosomal protein S4 OS=Ixodes scapularis OX=6... [more]
sp|P41042|RS4_DROME2.059e-12064.0940S ribosomal protein S4 OS=Drosophila melanogaste... [more]
sp|O62738|RS4X_MONDO3.891e-11860.8440S ribosomal protein S4, X isoform OS=Monodelphis... [more]
sp|P47836|RS4_CHICK4.435e-11861.5440S ribosomal protein S4 OS=Gallus gallus OX=9031 ... [more]
sp|Q6PBC4|RS4_XENTR1.335e-11761.5440S ribosomal protein S4 OS=Xenopus tropicalis OX=... [more]
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BLAST of 40S ribosomal protein S4 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A504YB931.905e-12364.1240S ribosomal protein S4 OS=Fasciola gigantica OX=... [more]
A0A095BXH73.423e-12266.1540S ribosomal protein S4 (Fragment) OS=Schistosoma... [more]
A0A183QSN31.207e-12166.1540S ribosomal protein S4 OS=Schistosoma rodhaini O... [more]
G4VS961.207e-12166.1540S ribosomal protein S4 OS=Schistosoma mansoni OX... [more]
A0A3S3Q3S41.225e-12165.12S4 RNA-binding domain-containing protein (Fragment... [more]
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BLAST of 40S ribosomal protein S4 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rps4x2.090e-11458.46ribosomal protein S4 X-linked [Source:NCBI gene;Ac... [more]
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BLAST of 40S ribosomal protein S4 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 2
Match NameE-valueIdentityDescription
rps4x4.362e-12161.22ribosomal protein S4 X-linked [Source:NCBI gene;Ac... [more]
rps4x1.052e-4346.98ribosomal protein S4 X-linked [Source:NCBI gene;Ac... [more]
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BLAST of 40S ribosomal protein S4 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 2
Match NameE-valueIdentityDescription
RPS4A8.142e-10657.69Protein component of the small (40S) ribosomal sub... [more]
RPS4B8.142e-10657.69Protein component of the small (40S) ribosomal sub... [more]
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BLAST of 40S ribosomal protein S4 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO335476.993e-11559.46Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of 40S ribosomal protein S4 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rps4x4.014e-11760.77ribosomal protein S4 X-linked [Source:NCBI gene;Ac... [more]
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BLAST of 40S ribosomal protein S4 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000026320.10.000e+0100.00SMESG000026320.1[more]
SMESG000063810.14.652e-7751.05SMESG000063810.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30008910 ID=SMED30008910|Name=40S ribosomal protein S4|organism=Schmidtea mediterranea sexual|type=transcript|length=1162bp
TTTCTTTTATAAAATAATTATGCTTTTTACCAATTCATATTAATAATATT
TTAAATTTATTAACTCATGACAAGATTTTATACTTGGTGTCCATCTGTAT
TTTGAATAGAAATCCCAACAATTCCAATTTTATATTGATGCGACTAAACA
ACTCAGCAACTTTGTTAGTTCTAGTTCAGCTATATAAATTAGAAAAGAAT
ATTTAAATATGTTGAAATTTAATTTTCTGATTTAAATTAAGGAGAAATTA
ACAGTCACCAATACGTTGATAATGTGTTTATCAGTAAATCTCGATAAATG
AGACTGATCACCCCAACGTCGTTGTCTTAATGTTGTCTAGCAACGGGAAC
TCCAGTTTTGAGCAAGCCCGAGGAGTTAAGAAACATTTGAAAAGATTAAA
TGCACCTAAGTCATGGTGCTTGGATAAAGTTTCAGGCAATTATGCAGTGA
GACCAAGATCTGGTCCACACAAGCAAAGCAATTCAATTCCTCTGACTTAC
ATTCTTAGACAGAATTTGAAGTATGCTCTTACTTACAGCGAAGTTCCTAA
AATTCTTATGCAAAAAACTGTCAAAGTTGACAACGTAGTCCGAACAGATA
AGAAATACTCGGTTGGATTCATGGATGTCATTTCAATTGAAAAGAACTCT
GAATTTTTCAGAATTATTTATGACACCAAACGTAGATTCTTACTACACAG
AATCCATGTGGATGAAAGTAAATATAAACTATGCCGAGTTAAAAAATTGG
GTGTTTTGGCTGGAGATATTCCTTATTTGACCACCCACGATGGCAGAACC
ATTAGATACCCAGATCCAAGTATTAAACCAAATGATACTTGTCAAGTTGA
TATAAATACTGACAAAATAATCAATTACATTAAATTTGAAACTGGTAACT
TGTGTATGGTTACCGGTGGTCACAATCAAGGTCGAGTCGGAATTGTTACT
AACATTGAACGACATATTGGAGGATATGACATTGTTCATATCAGAGATAG
TCAAAATCAACAATTTTCAACTAGATTGGTAAATGTATTTATTATCGGCA
AAAGCAACAAACCATGGATTTCATTGCCCAAAGGAGCTGGTTTAAGATTG
AGCATTGCTGAAGAACGAGACAGAAGACTTGAGGCTAAAAAATTGAATGC
TTAATTCTATTT
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protein sequence of SMED30008910-orf-1

>SMED30008910-orf-1 ID=SMED30008910-orf-1|Name=SMED30008910-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=275bp
MLSSNGNSSFEQARGVKKHLKRLNAPKSWCLDKVSGNYAVRPRSGPHKQS
NSIPLTYILRQNLKYALTYSEVPKILMQKTVKVDNVVRTDKKYSVGFMDV
ISIEKNSEFFRIIYDTKRRFLLHRIHVDESKYKLCRVKKLGVLAGDIPYL
TTHDGRTIRYPDPSIKPNDTCQVDINTDKIINYIKFETGNLCMVTGGHNQ
GRVGIVTNIERHIGGYDIVHIRDSQNQQFSTRLVNVFIIGKSNKPWISLP
KGAGLRLSIAEERDRRLEAKKLNA*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000026gut
PLANA:0000039gamma neoblast
PLANA:0000418head
PLANA:0000429neoblast
PLANA:0002032epidermal cell
Vocabulary: INTERPRO
TermDefinition
IPR038237Ribosomal_S4e_central_sf
IPR014722Rib_L2_dom2
IPR041982KOW_RPS4
IPR013843Ribosomal_S4e_N
IPR002942S4_RNA-bd
IPR03227740S_S4_C
IPR018199Ribosomal_S4e_N_CS
IPR005824KOW
IPR013845Ribosomal_S4e_central_region
IPR000876Ribosomal_S4e
Vocabulary: cellular component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
GO:0030529intracellular ribonucleoprotein complex
Vocabulary: biological process
TermDefinition
GO:0006412translation
Vocabulary: molecular function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
GO:0019843rRNA binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005824KOWSMARTSM00739kow_9coord: 185..212
e-value: 0.0057
score: 25.9
IPR005824KOWPFAMPF00467KOWcoord: 189..221
e-value: 5.0E-5
score: 23.1
IPR000876Ribosomal protein S4ePIRSFPIRSF002116RPS4a_RPS4ecoord: 12..252
e-value: 2.2E-90
score: 299.7
IPR000876Ribosomal protein S4ePANTHERPTHR1158130S/40S RIBOSOMAL PROTEIN S4coord: 13..272
NoneNo IPR availableGENE3DG3DSA:3.10.290.40coord: 12..128
e-value: 4.5E-49
score: 167.2
NoneNo IPR availablePANTHERPTHR11581:SF040S RIBOSOMAL PROTEIN S4-RELATEDcoord: 13..272
NoneNo IPR availablePRODOMPD002667coord: 98..192
e-value: 2.0E-32
score: 349.0
IPR038237Ribosomal protein S4e, central domain superfamilyGENE3DG3DSA:2.40.50.740coord: 133..183
e-value: 3.3E-23
score: 83.0
IPR03227740S ribosomal protein S4, C-terminal domainPFAMPF1612140S_S4_Ccoord: 223..270
e-value: 2.6E-23
score: 81.4
IPR013843Ribosomal protein S4e, N-terminalPFAMPF08071RS4NTcoord: 14..48
e-value: 5.8E-17
score: 61.5
IPR014722Ribosomal protein L2, domain 2GENE3DG3DSA:2.30.30.30coord: 186..256
e-value: 1.6E-32
score: 113.1
IPR013845Ribosomal protein S4e, central regionPFAMPF00900Ribosomal_S4ecoord: 108..180
e-value: 3.3E-30
score: 103.8
IPR002942RNA-binding S4 domainPFAMPF01479S4coord: 58..101
e-value: 3.7E-5
score: 23.3
IPR002942RNA-binding S4 domainPROSITEPS50889S4coord: 53..125
score: 9.569
IPR002942RNA-binding S4 domainCDDcd00165S4coord: 62..123
e-value: 9.79161E-6
score: 40.6958
IPR018199Ribosomal protein S4e, N-terminal, conserved sitePROSITEPS00528RIBOSOMAL_S4Ecoord: 19..33
IPR041982Ribosomal protein S4, KOW domainCDDcd06087KOW_RPS4coord: 186..240
e-value: 2.51122E-24
score: 90.6527