SH3 domain-containing protein

Overview
NameSH3 domain-containing protein
Smed IDSMED30008832
Length (bp)1800
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SH3 domain-containing protein (SMED30008832) t-SNE clustered cells

Violin plots show distribution of expression levels for SH3 domain-containing protein (SMED30008832) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SH3 domain-containing protein (SMED30008832) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SH3 domain-containing protein (SMED30008832) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30008832

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
cephalic gangliaSMED30008832h1SMcG0018222 dd_Smed_v4_14584_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parapharyngeal regionSMED30008832h1SMcG0018222 dd_Smed_v4_14584_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of SH3 domain-containing protein vs. TrEMBL
Match: A0A267G2C0 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig015536g1 PE=4 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 6.476e-36
Identity = 127/428 (29.67%), Postives = 245/428 (57.24%), Query Frame = 2
Query:  419 SPWLSKKMNNNVPELQNIKYK---SIGTDTLELKRRQDEEIRLMNERIDDLECQSKIKDREIETLKWIENEMQRRLQTTGDHLSLKQKAKETERKLLMQEKLNQDISNDNLRLYDELSVKDRKILELQSEVNNLDKIIANKEFICESEFSQQMISKVDXXXXXXXXXXXXXXXXXQQISELFREIERKNVELNIKTMKLEEATDEVGRREYDYIAQERNRFNLLDSLKSKERENEILSQQLKKVDELERKWKSLEDENLFLKQSLHELEDQCNDLERRHETRNDVESVVDELHDL---MLEKNRLSEENIYLSQQFSAAESKIREKTMEELSLQKENSQLKTFINDLEEEIGLYRKFEMEANEMDLQLRESERERNALENQIVEMKPQIQKYQIKSQEKDHLIMQLVRELKSQVGYLPTDLRKEISKN 1684
            S WLSKK++  + E Q    K   +  TDT +L   ++   R M E++ DL+ +++ K RE++T K+IENEM R+L+T  D   L+   K+ +R +  QEK+  +++ +N +L ++L+ +DR++ +LQSEV+NLD++I  K+ + E+E  Q +   +D+ + +L     +++    ++  +   + RK+ E+  K   +E+ T ++ + E      E  +    +  K+  RE ++L +Q  K+ + + +  +LE+EN ++ +++  LE +   LE     ++D E + D +HDL   + +KN+++++   L  +       +REKT++E +LQKE  +LK  +++LE+E   YR  +++   +  +  E ERER   E  + +++P++++ Q + +EKD LI +L  EL+S     P DL +E  +N
Sbjct:  114 SAWLSKKLDK-IDEKQKDSAKLPTNAQTDTKDLPNNEENRRRKMEEQLGDLKAENRAKTRELKTNKYIENEMNRKLKTADDAYVLRHTVKDKDRLINNQEKIIAELTAENAKLAEDLAERDRQVFQLQSEVDNLDRVIVAKKALKEAERLQAVGEDLDKAKDDLANANFEIETARNELKNVQSVVARKDREIKSKNDHIEQLTKQLTQAETKIAGLENEKLVADNHSKAANREAKLLKEQNDKLVDFKERCNNLEEENAYMAEAIRTLEAKILQLE---SIKHDKEVLDDLVHDLKSALKDKNQIAKDRRNLMIETQQLRDLLREKTVDEEALQKELYKLKGVLSELEKENNFYRDLDVDFRRLKQKYEEIERERFKNELVLAKLRPRVERLQNRCKEKDDLIRRLANELRSGGDRYPRDLLQEADRN 537          
BLAST of SH3 domain-containing protein vs. TrEMBL
Match: A0A267FY94 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig015536g2 PE=4 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 6.754e-36
Identity = 127/428 (29.67%), Postives = 245/428 (57.24%), Query Frame = 2
Query:  419 SPWLSKKMNNNVPELQNIKYK---SIGTDTLELKRRQDEEIRLMNERIDDLECQSKIKDREIETLKWIENEMQRRLQTTGDHLSLKQKAKETERKLLMQEKLNQDISNDNLRLYDELSVKDRKILELQSEVNNLDKIIANKEFICESEFSQQMISKVDXXXXXXXXXXXXXXXXXQQISELFREIERKNVELNIKTMKLEEATDEVGRREYDYIAQERNRFNLLDSLKSKERENEILSQQLKKVDELERKWKSLEDENLFLKQSLHELEDQCNDLERRHETRNDVESVVDELHDL---MLEKNRLSEENIYLSQQFSAAESKIREKTMEELSLQKENSQLKTFINDLEEEIGLYRKFEMEANEMDLQLRESERERNALENQIVEMKPQIQKYQIKSQEKDHLIMQLVRELKSQVGYLPTDLRKEISKN 1684
            S WLSKK++  + E Q    K   +  TDT +L   ++   R M E++ DL+ +++ K RE++T K+IENEM R+L+T  D   L+   K+ +R +  QEK+  +++ +N +L ++L+ +DR++ +LQSEV+NLD++I  K+ + E+E  Q +   +D+ + +L     +++    ++  +   + RK+ E+  K   +E+ T ++ + E      E  +    +  K+  RE ++L +Q  K+ + + +  +LE+EN ++ +++  LE +   LE     ++D E + D +HDL   + +KN+++++   L  +       +REKT++E +LQKE  +LK  +++LE+E   YR  +++   +  +  E ERER   E  + +++P++++ Q + +EKD LI +L  EL+S     P DL +E  +N
Sbjct:  122 SAWLSKKLDK-IDEKQKDSAKLPTNAQTDTKDLPNNEENRRRKMEEQLGDLKAENRAKTRELKTNKYIENEMNRKLKTADDAYVLRHTVKDKDRLINNQEKIIAELTAENAKLAEDLAERDRQVFQLQSEVDNLDRVIVAKKALKEAERLQAVGEDLDKAKDDLANANFEIETARNELKNVQSVVARKDREIKSKNDHIEQLTKQLTQAETKIAGLENEKLVADNHSKAANREAKLLKEQNDKLVDFKERCNNLEEENAYMAEAIRTLEAKILQLE---SIKHDKEVLDDLVHDLKSALKDKNQIAKDRRNLMIETQQLRDLLREKTVDEEALQKELYKLKGVLSELEKENNFYRDLDVDFRRLKQKYEEIERERFKNELVLAKLRPRVERLQNRCKEKDDLIRRLANELRSGGDRYPRDLLQEADRN 545          
BLAST of SH3 domain-containing protein vs. TrEMBL
Match: A0A267DMP0 (SH3 domain-containing protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig031867g1 PE=4 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 9.602e-32
Identity = 121/423 (28.61%), Postives = 234/423 (55.32%), Query Frame = 2
Query:  419 SPWLSKKMNNNVPELQNIKYKSIGTDTLELKRRQDEEIRLMNERIDDLECQSKIKDREIETLKWIENEMQRRLQTTGDHLSLKQKAKETERKLLMQEKLNQDISNDNLRLYDELSVKDRKILELQSEVNNLDKIIANKEFICESEFSQQMISKVDXXXXXXXXXXXXXXXXXQQISELFREIERKNVELNIKTMKLEEATDEVGRREYDYIAQERNRFNLLDS-LKSKERENEILSQQLKKVDELERKWKSLEDENLFLKQSLHELEDQCNDLERRHETRNDVESVVDELHDLMLEKNRLSEENIYLSQQFSAAESKIREKTMEELSLQKENSQLKTFINDLEEEIGLYRKFEMEANEMDLQLRESERERNALENQIVEMKPQIQKYQIKSQEKDHLIMQLVRELKSQVGYLPTDLRKEISKN 1684
            SPWL+K++       +N      GT       R+  +       +DDL+ +++ + RE++T ++IE EM R+L+   D   L+   K+ ER++  QEK+  D++ DN RL ++++ K+R I +LQSEV+NLD++I  K  + E+E  Q +  ++D  + EL   E+++   + ++  L  ++ RK  E+  K  ++E    E+   +   IA   N   + DS  ++ EREN+ L +Q+ K+ +   + ++LE+EN ++ +++  LE +   LE     +  +E +V +L   + +KN++ ++   L  +    +  +REK+ +E  LQ+E  +LK  +N+LE E   YR  E + +++  +  + ER++   E  + +++P++++ Q + +EKD LI +L  EL+     LP +L +E  +N
Sbjct:   96 SPWLNKQLQQENGGAEN------GTSYASQAARRSHQPH--ESELDDLKTENRAQSRELDTNRYIEREMNRKLKIADDAYMLRHLIKDKERQISNQEKVIADLTEDNARLGEDIADKERMIFQLQSEVDNLDRVIVAKNALKEAERLQAVSEELDRTKDELASIELEVDGAKSELKSLQNQLARKEREVRAKNEQIENLNRELVEAKSS-IASAENEKAVSDSHYRTAERENKALKEQVDKLADYRERCRNLEEENAYISEAVRALEAKVFHLETLKRDKETLEELVHDLKMALKDKNKVLKDRRDLLVETQQLKDMLREKSTDEQGLQQELGKLKDVLNELERENDFYRDLETDFHKIKKRYEDLERDKFKNELLVAKLRPKVERLQKRCKEKDDLIRRLANELRGGGERLPRELLQEADQN 509          
BLAST of SH3 domain-containing protein vs. TrEMBL
Match: A0A267DSA3 (SH3 domain-containing protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig031867g3 PE=4 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.810e-31
Identity = 121/423 (28.61%), Postives = 234/423 (55.32%), Query Frame = 2
Query:  419 SPWLSKKMNNNVPELQNIKYKSIGTDTLELKRRQDEEIRLMNERIDDLECQSKIKDREIETLKWIENEMQRRLQTTGDHLSLKQKAKETERKLLMQEKLNQDISNDNLRLYDELSVKDRKILELQSEVNNLDKIIANKEFICESEFSQQMISKVDXXXXXXXXXXXXXXXXXQQISELFREIERKNVELNIKTMKLEEATDEVGRREYDYIAQERNRFNLLDS-LKSKERENEILSQQLKKVDELERKWKSLEDENLFLKQSLHELEDQCNDLERRHETRNDVESVVDELHDLMLEKNRLSEENIYLSQQFSAAESKIREKTMEELSLQKENSQLKTFINDLEEEIGLYRKFEMEANEMDLQLRESERERNALENQIVEMKPQIQKYQIKSQEKDHLIMQLVRELKSQVGYLPTDLRKEISKN 1684
            SPWL+K++       +N      GT       R+  +       +DDL+ +++ + RE++T ++IE EM R+L+   D   L+   K+ ER++  QEK+  D++ DN RL ++++ K+R I +LQSEV+NLD++I  K  + E+E  Q +  ++D  + EL   E+++   + ++  L  ++ RK  E+  K  ++E    E+   +   IA   N   + DS  ++ EREN+ L +Q+ K+ +   + ++LE+EN ++ +++  LE +   LE     +  +E +V +L   + +KN++ ++   L  +    +  +REK+ +E  LQ+E  +LK  +N+LE E   YR  E + +++  +  + ER++   E  + +++P++++ Q + +EKD LI +L  EL+     LP +L +E  +N
Sbjct:   96 SPWLNKQLQQENGGAEN------GTSYASQAARRSHQPH--ESELDDLKTENRAQSRELDTNRYIEREMNRKLKIADDAYMLRHLIKDKERQINNQEKVIADLTEDNARLGEDIADKERMIFQLQSEVDNLDRVIVAKNALKEAERLQAVSEELDRTKDELASIELEVDGAKSELKSLQNQLARKEREVRAKNEQIENLNRELVEAKSS-IASAENEKAVSDSHYRTAERENKALKEQVDKLADYRERCRNLEEENAYISEAVRALEAKVFHLETLKRDKETLEELVHDLKMALKDKNKVLKDRRDLLVETQQLKDMLREKSTDEEGLQQELGKLKDVLNELERENDFYRDLETDFHKIKKRYEDLERDKFKNELLVAKLRPKVERLQKRCKEKDDLIRRLANELRGGGERLPRELLQEADQN 509          
BLAST of SH3 domain-containing protein vs. TrEMBL
Match: A0A267EQV6 (SH3 domain-containing protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig031867g2 PE=4 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.391e-31
Identity = 121/423 (28.61%), Postives = 234/423 (55.32%), Query Frame = 2
Query:  419 SPWLSKKMNNNVPELQNIKYKSIGTDTLELKRRQDEEIRLMNERIDDLECQSKIKDREIETLKWIENEMQRRLQTTGDHLSLKQKAKETERKLLMQEKLNQDISNDNLRLYDELSVKDRKILELQSEVNNLDKIIANKEFICESEFSQQMISKVDXXXXXXXXXXXXXXXXXQQISELFREIERKNVELNIKTMKLEEATDEVGRREYDYIAQERNRFNLLDS-LKSKERENEILSQQLKKVDELERKWKSLEDENLFLKQSLHELEDQCNDLERRHETRNDVESVVDELHDLMLEKNRLSEENIYLSQQFSAAESKIREKTMEELSLQKENSQLKTFINDLEEEIGLYRKFEMEANEMDLQLRESERERNALENQIVEMKPQIQKYQIKSQEKDHLIMQLVRELKSQVGYLPTDLRKEISKN 1684
            SPWL+K++       +N      GT       R+  +       +DDL+ +++ + RE++T ++IE EM R+L+   D   L+   K+ ER++  QEK+  D++ DN RL ++++ K+R I +LQSEV+NLD++I  K  + E+E  Q +  ++D  + EL   E+++   + ++  L  ++ RK  E+  K  ++E    E+   +   IA   N   + DS  ++ EREN+ L +Q+ K+ +   + ++LE+EN ++ +++  LE +   LE     +  +E +V +L   + +KN++ ++   L  +    +  +REK+ +E  LQ+E  +LK  +N+LE E   YR  E + +++  +  + ER++   E  + +++P++++ Q + +EKD LI +L  EL+     LP +L +E  +N
Sbjct:   94 SPWLNKQLQQENGGTEN------GTSYASQAARRSHQPH--ESELDDLKTENRAQSRELDTNRYIEREMNRKLKIADDAYMLRHLIKDKERQINNQEKVIADLTEDNARLGEDIADKERMIFQLQSEVDNLDRVIVAKNALKEAERLQAVSEELDRTKDELASIELEVDGAKSELKSLQNQLARKEREVRAKNEQIENLNRELVEAKSS-IASAENEKAVSDSHYRTAERENKALKEQVDKLADYRERCRNLEEENAYISEAVRALEAKVFHLETLKRDKETLEELVHDLKMALKDKNKVLKDRRDLLVETQQLKDMLREKSTDEEGLQQELGKLKDVLNELERENDFYRDLETDFHKIKKRYEDLERDKFKNELLVAKLRPKVERSQKRCKEKDDLIRRLANELRGGGERLPRELLQEADQN 507          
BLAST of SH3 domain-containing protein vs. Planmine SMEST
Match: SMESG000028773.1 (SMESG000028773.1)

HSP 1 Score: 1019.61 bits (2635), Expect = 0.000e+0
Identity = 540/542 (99.63%), Postives = 540/542 (99.63%), Query Frame = 2
Query:   89 MENRGKVNKLVKRFNNKPIMKIEPPRSSNNKSALKQEIDKTEIEQDEISVTIDIGEDENPIESKPLVKTRSKKNISLKSDNEASKSNYLLNNPNPEKQVKEINKNEASQLSPWLSKKMNNNVPELQNIKYKSIGTDTLELKRRQDEEIRLMNERIDDLECQSKIKDREIETLKWIENEMQRRLQTTGDHLSLKQKAKETERKLLMQEKLNQDISNDNLRLYDELSVKDRKILELQSEVNNLDKIIANKEFICESEFSQQMISKVDXXXXXXXXXXXXXXXXXQQISELFREIERKNVELNIKTMKLEEATDEVGRREYDYIAQERNRFNLLDSLKSKERENEILSQQLKKVDELERKWKSLEDENLFLKQSLHELEDQCNDLERRHETRNDVESVVDELHDLMLEKNRLSEENIYLSQQFSAAESKIREKTMEELSLQKENSQLKTFINDLEEEIGLYRKFEMEANEMDLQLRESERERNALENQIVEMKPQIQKYQIKSQEKDHLIMQLVRELKSQVGYLPTDLRKEISKNDIKENMDSIS 1714
            MENRGKVNKLVKRFNNKPIMKIEPPRSSNNKSALKQEIDKTEIEQDEISVTIDIGEDENPIESKPLVKTRSKKNISLKSDNEASKSN LLNNPNPEKQVKEINKNEASQLSPWLSKKMNNNVPELQNIKYKSIGTDTLELKRRQDEEIRLMNERIDDLECQSKIKDREIETLKWIENEMQRRLQTTGDHLSLKQKAKETERKLLMQEKLNQDISNDNLRLYDELSVKDRKILELQSEVNNLDKIIANKEFICESEFSQQMISKVDEIQKELMEKEIKLKENEQQISELFREIERKNVELNIKTMKLEEATDEVGRREYDYIAQERNRFNLLDSLKSKERENEILSQQLKKVDELERKWKSLEDENLFLKQSLHELEDQCNDLERRHETRNDVESVV ELHDLMLEKNRLSEENIYLSQQFSAAESKIREKTMEELSLQKENSQLKTFINDLEEEIGLYRKFEMEANEMDLQLRESERERNALENQIVEMKPQIQKYQIKSQEKDHLIMQLVRELKSQVGYLPTDLRKEISKNDIKENMDSIS
Sbjct:    1 MENRGKVNKLVKRFNNKPIMKIEPPRSSNNKSALKQEIDKTEIEQDEISVTIDIGEDENPIESKPLVKTRSKKNISLKSDNEASKSNDLLNNPNPEKQVKEINKNEASQLSPWLSKKMNNNVPELQNIKYKSIGTDTLELKRRQDEEIRLMNERIDDLECQSKIKDREIETLKWIENEMQRRLQTTGDHLSLKQKAKETERKLLMQEKLNQDISNDNLRLYDELSVKDRKILELQSEVNNLDKIIANKEFICESEFSQQMISKVDEIQKELMEKEIKLKENEQQISELFREIERKNVELNIKTMKLEEATDEVGRREYDYIAQERNRFNLLDSLKSKERENEILSQQLKKVDELERKWKSLEDENLFLKQSLHELEDQCNDLERRHETRNDVESVVGELHDLMLEKNRLSEENIYLSQQFSAAESKIREKTMEELSLQKENSQLKTFINDLEEEIGLYRKFEMEANEMDLQLRESERERNALENQIVEMKPQIQKYQIKSQEKDHLIMQLVRELKSQVGYLPTDLRKEISKNDIKENMDSIS 542          
The following BLAST results are available for this feature:
BLAST of SH3 domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SH3 domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SH3 domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SH3 domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SH3 domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SH3 domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SH3 domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SH3 domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A267G2C06.476e-3629.67Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A267FY946.754e-3629.67Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A267DMP09.602e-3228.61SH3 domain-containing protein OS=Macrostomum ligna... [more]
A0A267DSA31.810e-3128.61SH3 domain-containing protein OS=Macrostomum ligna... [more]
A0A267EQV62.391e-3128.61SH3 domain-containing protein OS=Macrostomum ligna... [more]
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BLAST of SH3 domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SH3 domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SH3 domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SH3 domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SH3 domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SH3 domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000028773.10.000e+099.63SMESG000028773.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30008832 ID=SMED30008832|Name=SH3 domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1800bp
CTAGATTGTGTGCTCCAATCGATATTATTATTATTATCCAATTTGTTTTA
ATTTTGAGCACAACTTTGGGATATATGTTCAGTGAATAATGGAAAATCGA
GGAAAGGTTAACAAATTAGTCAAAAGATTCAACAATAAACCAATTATGAA
GATTGAACCTCCTAGAAGTAGTAATAATAAGTCTGCATTGAAACAAGAAA
TTGACAAAACAGAAATTGAACAAGATGAAATCTCAGTGACAATTGATATT
GGAGAAGATGAAAATCCTATTGAGTCAAAACCGTTGGTAAAAACTCGTTC
AAAAAAGAATATTTCTCTAAAATCAGATAATGAAGCTTCAAAATCAAATT
ATCTTTTAAACAATCCAAATCCCGAGAAGCAAGTCAAGGAAATTAATAAG
AATGAAGCCTCTCAACTTTCTCCGTGGCTCAGTAAAAAAATGAATAACAA
TGTTCCAGAATTACAAAACATTAAATATAAATCCATCGGAACTGATACTT
TGGAATTAAAGCGTAGGCAAGATGAAGAAATTAGATTAATGAATGAAAGA
ATAGATGACTTGGAATGTCAATCCAAAATCAAAGATAGAGAAATTGAAAC
ACTTAAATGGATAGAAAATGAAATGCAAAGAAGACTTCAAACAACTGGCG
ATCATCTTTCGTTAAAACAAAAAGCAAAAGAAACTGAAAGAAAATTGCTC
ATGCAGGAAAAGCTCAATCAAGATATATCAAATGATAATCTTAGATTGTA
CGATGAATTAAGTGTAAAAGATCGAAAAATATTGGAACTTCAATCAGAAG
TAAATAATCTCGATAAAATAATTGCAAACAAAGAATTTATTTGTGAAAGT
GAATTTAGTCAACAAATGATAAGTAAAGTAGACGAAATTCAAAAAGAACT
CATGGAAAAGGAAATTAAATTAAAAGAAAACGAACAACAGATAAGTGAAT
TATTCAGAGAAATCGAAAGGAAAAATGTTGAATTAAACATTAAAACAATG
AAACTGGAAGAAGCAACTGATGAAGTCGGTCGACGCGAATATGATTACAT
TGCTCAAGAAAGAAACAGATTTAATCTTTTAGATTCTTTGAAGTCTAAAG
AACGAGAGAATGAGATTTTGTCGCAACAACTGAAGAAAGTGGATGAATTA
GAAAGAAAATGGAAAAGCTTAGAAGATGAAAATTTGTTTTTAAAACAATC
GTTGCATGAACTGGAAGATCAATGCAATGATCTAGAAAGACGTCACGAAA
CAAGAAACGATGTCGAATCAGTCGTGGATGAATTGCACGATTTGATGTTG
GAGAAAAATAGACTGAGTGAAGAAAATATTTATCTTTCTCAACAGTTTTC
AGCAGCCGAATCAAAAATTCGAGAAAAAACCATGGAAGAATTGTCTCTAC
AGAAAGAAAATAGTCAACTGAAAACTTTTATCAATGATTTAGAAGAAGAA
ATTGGACTTTATAGGAAATTCGAAATGGAAGCTAACGAGATGGATTTACA
GCTAAGAGAAAGTGAAAGAGAAAGAAATGCTTTAGAAAATCAAATTGTCG
AAATGAAACCCCAAATTCAGAAATATCAAATAAAAAGCCAAGAAAAAGAT
CATCTTATTATGCAATTAGTTAGAGAACTAAAATCTCAGGTAGGTTATTT
GCCTACAGACCTAAGAAAAGAAATAAGCAAGAATGATATTAAAGAAAATA
TGGATAGCATTTCTTGATTTTGACAAGATTTTAGTAATTTATTCGTCAGT
TCATCAGTCAAATTATACTATTATTTTTTTGTTTTTATTGAATCATGGAG
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protein sequence of SMED30008832-orf-1

>SMED30008832-orf-1 ID=SMED30008832-orf-1|Name=SMED30008832-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=543bp
MENRGKVNKLVKRFNNKPIMKIEPPRSSNNKSALKQEIDKTEIEQDEISV
TIDIGEDENPIESKPLVKTRSKKNISLKSDNEASKSNYLLNNPNPEKQVK
EINKNEASQLSPWLSKKMNNNVPELQNIKYKSIGTDTLELKRRQDEEIRL
MNERIDDLECQSKIKDREIETLKWIENEMQRRLQTTGDHLSLKQKAKETE
RKLLMQEKLNQDISNDNLRLYDELSVKDRKILELQSEVNNLDKIIANKEF
ICESEFSQQMISKVDEIQKELMEKEIKLKENEQQISELFREIERKNVELN
IKTMKLEEATDEVGRREYDYIAQERNRFNLLDSLKSKERENEILSQQLKK
VDELERKWKSLEDENLFLKQSLHELEDQCNDLERRHETRNDVESVVDELH
DLMLEKNRLSEENIYLSQQFSAAESKIREKTMEELSLQKENSQLKTFIND
LEEEIGLYRKFEMEANEMDLQLRESERERNALENQIVEMKPQIQKYQIKS
QEKDHLIMQLVRELKSQVGYLPTDLRKEISKNDIKENMDSIS*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0003117parapharyngeal cell
Vocabulary: molecular function
TermDefinition
GO:0003774motor activity
Vocabulary: cellular component
TermDefinition
GO:0005923bicellular tight junction
GO:0016459myosin complex
GO:0030054cell junction
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 257..312
NoneNo IPR availableCOILSCoilCoilcoord: 334..392
NoneNo IPR availableCOILSCoilCoilcoord: 141..161
NoneNo IPR availableCOILSCoilCoilcoord: 458..492
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..79
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 80..99
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..99
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..42