hypothetical protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30008784 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 3
Homology
BLAST of hypothetical protein vs. TrEMBL
Match: I1ZIE7 (Uncharacterized protein (Fragment) OS=Schmidtea mediterranea OX=79327 PE=2 SV=1) HSP 1 Score: 221.861 bits (564), Expect = 1.489e-66 Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 3 Query: 1290 EQRSFRPKSSSSYCSLTNLRPKSKQFLDSLEISNELDNLTPTQPESFPLHIDKSHGLISRRSAKVSSNGFEAVADKSATSGYVNLEFNQIFEQINQLCTARVDAPACV 1613 EQRSFRPKSSSSYCSLTNLRPKSKQFLDSLEISNELDNLTPTQPESFPLHIDKSHGLISRRSAKVSSNGFEAVADKSATSGYVNLEFNQIFEQINQLCTARVDAPACV Sbjct: 1 EQRSFRPKSSSSYCSLTNLRPKSKQFLDSLEISNELDNLTPTQPESFPLHIDKSHGLISRRSAKVSSNGFEAVADKSATSGYVNLEFNQIFEQINQLCTARVDAPACV 108
BLAST of hypothetical protein vs. TrEMBL
Match: A0A183KGA7 (Uncharacterized protein OS=Schistosoma curassoni OX=6186 GN=SCUD_LOCUS14054 PE=4 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 2.382e-12 Identity = 65/255 (25.49%), Postives = 102/255 (40.00%), Query Frame = 3 Query: 111 IIESDLLYRYKKKWVTRYCKLVQTNSFSDSVKLLIYTSDENRSKRLSLGIRKSCQLMSKHVVYGHLHGIHMNNEAHIMFVVCKNSVECLAFKEFSIMKLWSDMITKYLNDISQSVTLVHADKNSQLKA-----------------------KL---------DGRLLINCSHISFIRDPSCSEPKLLMSWKIADIMEYGCSREIKKNASKGKFKTSPIDLSQSIFIIKASPLCYQAPNFHIFSCHSPKQFCDRLE 779 +IE + R KW + C L + +F +S+KL ++ D + + CQ V+ ++ G+ ++ IMFV C + C++F+ F M W D++ L L+ A KNS L + KL DG L + I F P CS P+LL +W + C +NA +G F P S+F + A P +AP H+F + CD +E Sbjct: 7 LIEGIVPVRVSGKWKKKLCALERPATFINSLKLFVFNDDGSICR---------CQ-----DVHAYILGVDSKHDGVIMFV-CTYKLRCISFRHFEEMTKWDDILKANLKCSYFHADLIVAPKNSILYSYARHRRRFPLIQGPKNQIFSSLRKLYPTLCSNSSDGYLHVTRDRICFTTGPGCSHPRLLATWTFDNDEIVQCGTARVQNAVRGSFTDPP-----SLFFLTAFPDHPEAPGSHLFLSNRATDLCDMIE 241
BLAST of hypothetical protein vs. TrEMBL
Match: A0A183PKI1 (Uncharacterized protein OS=Schistosoma mattheei OX=31246 GN=SMTD_LOCUS14867 PE=4 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 3.125e-12 Identity = 64/255 (25.10%), Postives = 102/255 (40.00%), Query Frame = 3 Query: 111 IIESDLLYRYKKKWVTRYCKLVQTNSFSDSVKLLIYTSDENRSKRLSLGIRKSCQLMSKHVVYGHLHGIHMNNEAHIMFVVCKNSVECLAFKEFSIMKLWSDMITKYLNDISQSVTLVHADKNSQLKA-----------------------KL---------DGRLLINCSHISFIRDPSCSEPKLLMSWKIADIMEYGCSREIKKNASKGKFKTSPIDLSQSIFIIKASPLCYQAPNFHIFSCHSPKQFCDRLE 779 +IE + R KW + C L + +F +S+KL ++ D + + CQ V+ ++ G+ ++ IMFV C + C++F+ F M W D++ L L+ A +NS L + KL DG L + I F P CS P+LL +W + C +NA +G F P S+F + A P +AP H+F + CD +E Sbjct: 7 LIEGIVPVRVSGKWKKKLCALERPATFINSLKLFVFNDDGSICR---------CQ-----DVHAYILGVDSKHDGVIMFV-CTYKLRCISFRHFEEMTKWDDILKANLKCSYFHADLIVAPRNSILYSYARHRRRFPLIQRPKNQIFSSLRKLYPTLCSNSSDGYLHVTRDRICFTTGPGCSHPRLLATWTFDNDEIVQCGTARVQNAVRGSFTDPP-----SLFFLTAFPDHPEAPGSHLFLSNRATDLCDMIE 241
BLAST of hypothetical protein vs. TrEMBL
Match: G4V7A3 (Uncharacterized protein OS=Schistosoma mansoni OX=6183 GN=Smp_079370.1 PE=4 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.072e-10 Identity = 63/254 (24.80%), Postives = 99/254 (38.98%), Query Frame = 3 Query: 111 IIESDLLYRYKKKWVTRYCKLVQTNSFSDSVKLLIYTSDENRSKRLSLGIRKSCQLMSKHVVYGHLHGIHMNNEAHIMFVVCKNSVECLAFKEFSIMKLWSDMITKYLNDISQSVTLVHADKNSQLKA----------------------KL---------DGRLLINCSHISFIRDPSCSEPKLLMSWKIADIMEYGCSREIKKNASKGKFKTSPIDLSQSIFIIKASPLCYQAPNFHIFSCHSPKQFCDRLE 779 +IE + + KW + C L + +F +S+KL ++ D G CQ V+ ++ G+ ++ IMFV C + C++F+ F M W D++ L L+ A KNS L + KL DG L + I F P CS P+LL +W + C +N +G F P S+F + A +AP H+F + CD +E Sbjct: 7 LIEDIVPVKVSGKWKKKLCALERPATFINSLKLFVFNED---------GSLCRCQ-----DVHAYILGVDSKHDGVIMFV-CTYKLRCISFRHFEEMTKWDDILKANLKCSYFHADLIVAPKNSILYSYARHRRRFPLIQGPKNQIFSSRKLYPTLCNNSSDGYLHVTRDRICFTTGPGCSHPRLLATWTFDNDEIVQCGTARVQNTVRGSFTDPP-----SLFFLTAFSDHPEAPGSHLFLSNRATDLCDMIE 240
BLAST of hypothetical protein vs. TrEMBL
Match: A0A3Q0KI43 (Uncharacterized protein OS=Schistosoma mansoni OX=6183 PE=4 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.424e-10 Identity = 63/254 (24.80%), Postives = 99/254 (38.98%), Query Frame = 3 Query: 111 IIESDLLYRYKKKWVTRYCKLVQTNSFSDSVKLLIYTSDENRSKRLSLGIRKSCQLMSKHVVYGHLHGIHMNNEAHIMFVVCKNSVECLAFKEFSIMKLWSDMITKYLNDISQSVTLVHADKNSQLKA----------------------KL---------DGRLLINCSHISFIRDPSCSEPKLLMSWKIADIMEYGCSREIKKNASKGKFKTSPIDLSQSIFIIKASPLCYQAPNFHIFSCHSPKQFCDRLE 779 +IE + + KW + C L + +F +S+KL ++ D G CQ V+ ++ G+ ++ IMFV C + C++F+ F M W D++ L L+ A KNS L + KL DG L + I F P CS P+LL +W + C +N +G F P S+F + A +AP H+F + CD +E Sbjct: 7 LIEDIVPVKVSGKWKKKLCALERPATFINSLKLFVFNED---------GSLCRCQ-----DVHAYILGVDSKHDGVIMFV-CTYKLRCISFRHFEEMTKWDDILKANLKCSYFHADLIVAPKNSILYSYARHRRRFPLIQGPKNQIFSSRKLYPTLCNNSSDGYLHVTRDRICFTTGPGCSHPRLLATWTFDNDEIVQCGTARVQNTVRGSFTDPP-----SLFFLTAFSDHPEAPGSHLFLSNRATDLCDMIE 240
BLAST of hypothetical protein vs. Planmine SMEST
Match: SMESG000047305.1 (SMESG000047305.1) HSP 1 Score: 1016.14 bits (2626), Expect = 0.000e+0 Identity = 502/504 (99.60%), Postives = 503/504 (99.80%), Query Frame = 3 Query: 102 MDVIIESDLLYRYKKKWVTRYCKLVQTNSFSDSVKLLIYTSDENRSKRLSLGIRKSCQLMSKHVVYGHLHGIHMNNEAHIMFVVCKNSVECLAFKEFSIMKLWSDMITKYLNDISQSVTLVHADKNSQLKAKLDGRLLINCSHISFIRDPSCSEPKLLMSWKIADIMEYGCSREIKKNASKGKFKTSPIDLSQSIFIIKASPLCYQAPNFHIFSCHSPKQFCDRLESISANQENFHSPNECDLVMQRSRTESFNTIRSGYKSITGYNSDTEVSPESPCNNAGTNLFFSENNQSSFRIPRFQRSVSEAPQXXXXXXXXXXXXEDKEYQLTEHNVAVMFQSANKNTSSDTDSPLRSNTLTWLERYPYEREPSRTPYRRNVSESNQGSYRTLNNYQWNIEQRSFRPKSSSSYCSLTNLRPKSKQFLDSLEISNELDNLTPTQPESFPLHIDKSHGLISRRSAKVSSNGFEAVADKSATSGYVNLEFNQIFEQINQLCTARVDAPACV 1613 MDVIIESDLLYRYKKKWVTRYCKLVQTNSFSDSVKLLIYTSDENRSKRLSLGIRKSCQLMSKHVVYGHLHGIHMNNEAHIMFVVCKNSVECLAFKEFSIMKLWSDMITKYLNDISQ VTLVHADKNSQLKAKLDGRLLINCSHISFIRDPSCSEPKLLMSWKIADIMEYGCSREIKKNASKGKFKTSPIDLSQSIFIIKASPLCYQAPNFHIFSCHSPKQFCDRLESISANQENFHSPNECDLVMQRSRTESFNTIRSGYKSITGYNSDTEVSPESPCNNAGTNLFFSENNQSSFR+PRFQRSVSEAPQRRSRIDSSFSISEDKEYQLTEHNVAVMFQSANKNTSSDTDSPLRSNTLTWLERYPYEREPSRTPYRRNVSESNQGSYRTLNNYQWNIEQRSFRPKSSSSYCSLTNLRPKSKQFLDSLEISNELDNLTPTQPESFPLHIDKSHGLISRRSAKVSSNGFEAVADKSATSGYVNLEFNQIFEQINQLCTARVDAPACV Sbjct: 1 MDVIIESDLLYRYKKKWVTRYCKLVQTNSFSDSVKLLIYTSDENRSKRLSLGIRKSCQLMSKHVVYGHLHGIHMNNEAHIMFVVCKNSVECLAFKEFSIMKLWSDMITKYLNDISQPVTLVHADKNSQLKAKLDGRLLINCSHISFIRDPSCSEPKLLMSWKIADIMEYGCSREIKKNASKGKFKTSPIDLSQSIFIIKASPLCYQAPNFHIFSCHSPKQFCDRLESISANQENFHSPNECDLVMQRSRTESFNTIRSGYKSITGYNSDTEVSPESPCNNAGTNLFFSENNQSSFRVPRFQRSVSEAPQRRSRIDSSFSISEDKEYQLTEHNVAVMFQSANKNTSSDTDSPLRSNTLTWLERYPYEREPSRTPYRRNVSESNQGSYRTLNNYQWNIEQRSFRPKSSSSYCSLTNLRPKSKQFLDSLEISNELDNLTPTQPESFPLHIDKSHGLISRRSAKVSSNGFEAVADKSATSGYVNLEFNQIFEQINQLCTARVDAPACV 504
BLAST of hypothetical protein vs. Planmine SMEST
Match: SMESG000058269.1 (SMESG000058269.1) HSP 1 Score: 57.7658 bits (138), Expect = 2.243e-8 Identity = 48/203 (23.65%), Postives = 88/203 (43.35%), Query Frame = 3 Query: 99 KMDVIIESDLLYRYKKKWVTRYCKLVQTNSFSDSVKLLIYTSDENRSKRLSLGIRKSCQLMSKHVVYGHLHGIHMNNEAHIMFVVCKNSVECLAFKEFSIMKLWSDMITKYLNDISQSVTLVHADKNSQLKAK----LDGRLLINCSHISFIRDPSCSEPKLLMSWKIA-----DIMEYGCSR--------EIKKNASKGKFK 656 ++ +E ++ YR +KW RYC L ++ S S ++ + I + + + + Q + + G +G H++ E +M ++ +N V C+AF + M W++ + K+ + TL + S L K + G L I I I +P+ K + W I+ DI C + K N +KG F+ Sbjct: 3 RLVTFLEDNVRYRDGRKWKQRYCMLNKSESKSGAITMYITKQFGAAALNQIIDDKLNRQYLIDEIT-GFEYGRHVDKEGSVMALIGRNVVYCIAFSQNETMFRWAETLHKHFKCSNFHATLKKVSETSGLFNKISTGIQGNLHIQSLRICLIGEPADGN-KFICEWPISTINSIDIFNTDCDKVKELVIKSNSKLNKNKGHFE 203
BLAST of hypothetical protein vs. Planmine SMEST
Match: SMESG000058269.1 (SMESG000058269.1) HSP 1 Score: 57.7658 bits (138), Expect = 2.302e-8 Identity = 48/203 (23.65%), Postives = 88/203 (43.35%), Query Frame = 3 Query: 99 KMDVIIESDLLYRYKKKWVTRYCKLVQTNSFSDSVKLLIYTSDENRSKRLSLGIRKSCQLMSKHVVYGHLHGIHMNNEAHIMFVVCKNSVECLAFKEFSIMKLWSDMITKYLNDISQSVTLVHADKNSQLKAK----LDGRLLINCSHISFIRDPSCSEPKLLMSWKIA-----DIMEYGCSR--------EIKKNASKGKFK 656 ++ +E ++ YR +KW RYC L ++ S S ++ + I + + + + Q + + G +G H++ E +M ++ +N V C+AF + M W++ + K+ + TL + S L K + G L I I I +P+ K + W I+ DI C + K N +KG F+ Sbjct: 3 RLVTFLEDNVRYRDGRKWKQRYCMLNKSESKSGAITMYITKQFGAAALNQIIDDKLNRQYLIDEIT-GFEYGRHVDKEGSVMALIGRNVVYCIAFSQNETMFRWAETLHKHFKCSNFHATLKKVSETSGLFNKISTGIQGNLHIQSLRICLIGEPADGN-KFICEWPISTINSIDIFNTDCDKVKELVIKSNSKLNKNKGHFE 203 The following BLAST results are available for this feature:
BLAST of hypothetical protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of hypothetical protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of hypothetical protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of hypothetical protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of hypothetical protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of hypothetical protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of hypothetical protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of hypothetical protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of hypothetical protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of hypothetical protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of hypothetical protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of hypothetical protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of hypothetical protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of hypothetical protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 3
Analyses
This transcript is derived from or has results from the following analyses Cross References
External references for this transcript
Sequences
The following sequences are available for this feature:
transcript sequence >SMED30008784 ID=SMED30008784|Name=hypothetical protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1817bpback to top protein sequence of SMED30008784-orf-1 >SMED30008784-orf-1 ID=SMED30008784-orf-1|Name=SMED30008784-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=505bp MDVIIESDLLYRYKKKWVTRYCKLVQTNSFSDSVKLLIYTSDENRSKRLSback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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