SMED30008680
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30008680 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 8
Alignments
SMED30008680 aligns in the following genomic locations:
Homology
BLAST of SMED30008680 vs. TrEMBL
Match: A0A267GCJ6 (Uncharacterized protein (Fragment) OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig031497g1 PE=4 SV=1) HSP 1 Score: 292.352 bits (747), Expect = 6.193e-89 Identity = 152/485 (31.34%), Postives = 252/485 (51.96%), Query Frame = 1 Query: 40 HLKKMGNKYSQISTDLYPSHYFILIFRQPDIIQAINAESDLIDNLTQVFERFWPFGIKTEKKIRFGIELKLNNNPFSNDPKPLEKLLQTNLLICEILSNVLSCGYGIVSSGYIIKSFERSTLIFRKLNVELKVHSSSICSIILEGWNRIIINNIDEMTSSFLLKEITSLAMINILSLQSISNYLTMEMDGQPWDSHKSNSVKSPLIFLNLICLLMQCGYKVMCKAHVTGYNDTVFFER---------DSGTLVNENDVFVLSLNQLDQLRTYCATSDAINAISRVIKLQWEKGI--HNDSIQDKIWICYLNGSPWSVANWDKDSSFSSKLLMMEIFKELSKNNWEITLSIKLYRSQYDKSLFVFQRNSLNNDNNHFFSIGPHDIDRLCITGSPKCLLSQLKDRFSEHWVKGIKEDSYENGCN---EYIMEGKPWHLTEESSSVNLDAIGFFCWALEHISDFGWSLVETADICSTSAYSPTDYIFS 1452 H MGN YS+I +P F++ FRQPD + +NAE L+ L Q W G+++EKK G+EL+L+ PF ++ P ++L+ L+ +L +L G +++SG +++ ERS + RK + + ++ +E W ++++ N S+ L+ ++ + + + Y ME+ QPWDS+KS S +SPLI L + LL+ GY + H G D + F + D V++ +FVLSLNQ DQLR Y A + + + WE G+ S D + L SPW V +WDKD++F ++ + E+ +EL W+I + +YRS YDKSL V +RNS H S+ HD++RLC+ G+ + L ++L + + W +G + +++E+ E+ + KPW E+ NL+ G ++ + GW + + DICS+S +SP+ I S Sbjct: 41 HAAAMGNDYSRIQRRAFPQSAFVVAFRQPDHLLVLNAEPALLQQLRQAVSANWRGGVRSEKKYPLGVELRLDKEPFDSEVHPADRLVPIYRLVTALLKLLLDRGCTLLASGAVVRGVERSAWLLRKASDLCPARDVELLTVAMEDWGKLLLINSPAALSTALMAKLKEVWPKGVELVSEEPTYFAMELGEQPWDSYKSASERSPLIVLEVTRLLLAHGYSFLAATHARGSMDCLTFVKSTFPASDCQDEQPAVDDG-LFVLSLNQRDQLRLYAAPQEVRECVEKFAATSWESGVLRSEASAGDLLQSVQLKSSPWFVPDWDKDAAFCAREFIQELLRELRSKGWQIAVKADIYRSAYDKSLLVLRRNSAQQSLPH-LSVTTHDVNRLCVLGATESLKAELVNDVKDAWSRGHRCEAFESASGWTVEFSFDRKPWQWDPEAPLTNLEGFGLVATLIDVLQQRGWHVETSLDICSSSKFSPSTIILS 523
BLAST of SMED30008680 vs. TrEMBL
Match: A0A267E9A1 (Uncharacterized protein (Fragment) OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig005544g1 PE=4 SV=1) HSP 1 Score: 292.352 bits (747), Expect = 1.382e-88 Identity = 152/485 (31.34%), Postives = 252/485 (51.96%), Query Frame = 1 Query: 40 HLKKMGNKYSQISTDLYPSHYFILIFRQPDIIQAINAESDLIDNLTQVFERFWPFGIKTEKKIRFGIELKLNNNPFSNDPKPLEKLLQTNLLICEILSNVLSCGYGIVSSGYIIKSFERSTLIFRKLNVELKVHSSSICSIILEGWNRIIINNIDEMTSSFLLKEITSLAMINILSLQSISNYLTMEMDGQPWDSHKSNSVKSPLIFLNLICLLMQCGYKVMCKAHVTGYNDTVFFER---------DSGTLVNENDVFVLSLNQLDQLRTYCATSDAINAISRVIKLQWEKGI--HNDSIQDKIWICYLNGSPWSVANWDKDSSFSSKLLMMEIFKELSKNNWEITLSIKLYRSQYDKSLFVFQRNSLNNDNNHFFSIGPHDIDRLCITGSPKCLLSQLKDRFSEHWVKGIKEDSYENGCN---EYIMEGKPWHLTEESSSVNLDAIGFFCWALEHISDFGWSLVETADICSTSAYSPTDYIFS 1452 H MGN YS+I +P F++ FRQPD + +NAE L+ L Q W G+++EKK G+EL+L+ PF ++ P ++L+ L+ +L +L G +++SG +++ ERS + RK + + ++ +E W ++++ N S+ L+ ++ + + + Y ME+ QPWDS+KS S +SPLI L + LL+ GY + H G D + F + D V++ +FVLSLNQ DQLR Y A + + + WE G+ S D + L SPW V +WDKD++F ++ + E+ +EL W+I + +YRS YDKSL V +RNS H S+ HD++RLC+ G+ + L ++L + + W +G + +++E+ E+ + KPW E+ NL+ G ++ + GW + + DICS+S +SP+ I S Sbjct: 69 HAAAMGNDYSRIQRRAFPQSAFVVAFRQPDHLLVLNAEPALLQQLRQAVSANWRGGVRSEKKYPLGVELRLDKEPFDSEVHPADRLVPIYRLVTALLKLLLDRGCTLLASGAVVRGVERSAWLLRKASDLCPARDVELLTVAMEDWGKLLLINSPAALSTALMAKLKEVWPKGVELVSEEPTYFAMELGEQPWDSYKSASERSPLIVLEVTRLLLAHGYSFLAATHARGSMDCLTFVKSTFPASDCQDEQPAVDDG-LFVLSLNQRDQLRLYAAPQEVRECVEKFAATSWESGVLRSEASAGDLLQSVQLKSSPWFVPDWDKDAAFCAREFIQELLRELRSKGWQIAVKADIYRSAYDKSLLVLRRNSAQQSLPH-LSVTTHDVNRLCVLGATESLKAELVNDVKDAWSRGHRCEAFESASGWTVEFSFDRKPWQWDPEAPLTNLEGFGLVATLIDVLQQRGWHVETSLDICSSSKFSPSTIILS 551
BLAST of SMED30008680 vs. TrEMBL
Match: A0A267DV85 (Uncharacterized protein (Fragment) OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig034140g1 PE=4 SV=1) HSP 1 Score: 291.197 bits (744), Expect = 1.993e-88 Identity = 152/485 (31.34%), Postives = 251/485 (51.75%), Query Frame = 1 Query: 40 HLKKMGNKYSQISTDLYPSHYFILIFRQPDIIQAINAESDLIDNLTQVFERFWPFGIKTEKKIRFGIELKLNNNPFSNDPKPLEKLLQTNLLICEILSNVLSCGYGIVSSGYIIKSFERSTLIFRKLNVELKVHSSSICSIILEGWNRIIINNIDEMTSSFLLKEITSLAMINILSLQSISNYLTMEMDGQPWDSHKSNSVKSPLIFLNLICLLMQCGYKVMCKAHVTGYNDTVFFER---------DSGTLVNENDVFVLSLNQLDQLRTYCATSDAINAISRVIKLQWEKGI--HNDSIQDKIWICYLNGSPWSVANWDKDSSFSSKLLMMEIFKELSKNNWEITLSIKLYRSQYDKSLFVFQRNSLNNDNNHFFSIGPHDIDRLCITGSPKCLLSQLKDRFSEHWVKGIKEDSYENGCN---EYIMEGKPWHLTEESSSVNLDAIGFFCWALEHISDFGWSLVETADICSTSAYSPTDYIFS 1452 H MGN YS+I +P F++ FRQPD + +NAE L+ L Q W G++ EKK G+EL+L+ PF ++ P ++L+ L+ +L +L G +++SG +++ ERS + RK + + ++ +E W ++++ N S+ L+ ++ + + + Y ME+ QPWDS+KS S +SPLI L + LL+ GY + H G D + F + D V++ +FVLSLNQ DQLR Y A + + + WE G+ S D + L SPW V +WDKD++F ++ + E+ +EL W+I + +YRS YDKSL V +RNS H S+ HD++RLC+ G+ + L ++L + + W +G + +++E+ E+ + KPW E+ NL+ G ++ + GW + + DICS+S +SP+ I S Sbjct: 41 HAAAMGNDYSRIQRRAFPQSAFVVAFRQPDHLLVLNAEPALLQQLRQAVSANWRSGVRLEKKYPLGVELRLDKEPFDSEVHPADRLVPIYRLVTALLKLLLDRGCTLLASGAVVRGVERSAWLLRKASDLCPARDVELLTVAMEDWGKLLLINSPAALSTALMAKLKEVWPKGVELVSEEPTYFAMELGEQPWDSYKSASERSPLIVLEVTRLLLAHGYSFLAATHARGSMDCLTFVKSTFPASDCQDEQPAVDDG-LFVLSLNQRDQLRLYAAPQEVRECVEKFAATSWESGVLRSEASAGDLLQSVQLKSSPWFVPDWDKDAAFCAREFIQELLRELRSKGWQIAVKADIYRSAYDKSLLVLRRNSAQQSLPH-LSVTTHDVNRLCVLGATESLKAELVNDVKDAWSRGHRCEAFESASGWTVEFSFDRKPWQWDPEAPLTNLEGFGLVATLIDVLQQRGWHVETSLDICSSSKFSPSTIILS 523
BLAST of SMED30008680 vs. TrEMBL
Match: A0A0M3JRI7 (Uncharacterized protein OS=Anisakis simplex OX=6269 GN=ASIM_LOCUS10081 PE=4 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 1.307e-31 Identity = 115/470 (24.47%), Postives = 214/470 (45.53%), Query Frame = 1 Query: 52 MGNKYSQISTDLYPSHYFILIFRQPDIIQAINAESDLIDNLTQVFERFWPFGIKTEKKIRFGI-ELKLNNNPFSNDPKPLEKLLQTNLLICEILSNVLSCGYGIVSSGYIIKSFERSTLIFRKL---NVELKVHSSSICSIILEGWNRIIINNIDEMTSSFLLKEITSLAMINILSLQSISNYLTMEMDGQPWDSHKS-NSVKSPLIFLNLICLLMQCGYKVMCKAHVTGYNDTVFF--ERDSGTLVNENDVFVLSLNQLDQLRTYCATSDAINAISRVIKLQWEKGIHNDSIQ--DKIWICY-LNGSPWSVANWDKDSSFSSKLLMMEIFKELSKNNWEITLSIKLYRSQYDKSLFVFQRNSLNNDNNHFFSIGPHDIDRLCITGSPKCLLSQLKDRFSEHWVKGIKEDSYENGCNEYIMEGKPWHLTEESSSVNLDAIGFFCWAL-----EHISDFGWSLVETADICS 1416 MG + S YF L F D I ++A ++I + V + GI++E + G + KL PF + + +QT L++CE+L + G+ + S + + + STL F+K+ E I + L +R+ + N ++ L++ + +L + S NY ++M G W++ + ++ + LN + Y+ A++ G D +FF +RD V + + +LSLN D+LR CA ++ ++ + ++ W KGI + ++ D + Y L G PW N + S+LL+ I ++L W + +I L R DK++F+ +R + + + F+I P + D+L + + K ++ + + W GI+ + Y EY + G PW T SS+ D C + + + GW ++ +AD+ S Sbjct: 1 MGQQVSSFPKRPKDFTYFCLTFHVTDSIVLVDASEEVISMVRSVVSQLSAAGIQSESQGPCGAYKFKLRGMPFVTSSREIS--VQTKLMLCELLKVLRENGWELTLSSDLSRRRDLSTLFFQKIPNNGYEYAFRGCHIMCLSLSSMDRLQLVNAPVEANNILIECVDTLHQRD----HSGQNYFEVQMKGYLWEALTAEGGFQARSLLLNTFSRFHELRYRFYGTANIKGTADCIFFISDRDD---VGQREYCMLSLNASDRLRLVCAPNEVVDLVGECLQRYWVKGIQHAKVKGGDPLHFEYKLGGFPW---NSMGTEAVESRLLITIILQQLVTIGWAVVTAIDLSRRATDKAVFLLRRCAASTIPH--FAICPAETDKLRVINANKEMIEVVGNVLRSCWTLGIQREEYYGNSFEYKLVGYPWSST--VSSLTGDHQYELCRMMMISLIDELGRHGWRVICSADVSS 454
BLAST of SMED30008680 vs. TrEMBL
Match: A0A267FU33 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig033074g3 PE=4 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 8.436e-31 Identity = 111/475 (23.37%), Postives = 217/475 (45.68%), Query Frame = 1 Query: 52 MGNKYSQISTDLYPSHYFILIFRQPDIIQAINAESDLIDNLTQVFERFWPFGIKTEKKIRFGIELKLNNNPFSNDPKPLEKLLQTNLLICEILSNVLSCGYGIVSSGYIIKSFERSTLIFRKLNVELKVHSSSICSIILEGWNRIIINNIDEMTSSFLLKEITSLAMINILS-LQSISNYLTMEMDGQPWDSHKSNSVKSPLIFLNLICLLMQCGYKVMCKAHVTGYNDTVFFERDSGT-------LVNENDVFVLSLNQLDQLRTYCATSDAINAISRVIKLQWEKGIHNDSIQDKIWICYLNGSPWSVANWDKDS-SFSSKLLMMEIFKELSKNNWEITLSIKLYRSQYDKSLFVFQRNSLNNDNNHFFSIGPHDIDRLCITGSPKCLLSQLKDRFSEHWVKGIKEDSYENGCNEYIMEGKPWHLTEESSSVNLDAIGFFCWALEHISDFGWSLVETADICST--SAYSPTDY 1443 MG YS + ++ +++F + FR PD I+ I+ + ++ + + R + G++ E L NPF E+ + + C +L ++ G+ +++S + ++ + S+ F + N + S++C I L G+++ + N + + + + + I ++ + M+M+G PW + + +V++ + L +I + GY + + D++FF S L + + FVLSLN+ D+LR A S+A + V+ W G+ D L GSPW W + + S ++LL+ + +EL W + +I+L R DKS+FVF R + + S+ H L +P ++ L+ + +++ GIK + G ++ + G+PW + + + ++ LE + GWSLV +AD+ + A S DY Sbjct: 1 MGGNYSYLPSEPASNNFFCITFRVPDSIKVIDCDPPTLEIVRKAIARGYRLGLRQEYDKYGSRTFVLAGNPFKVGCSK-EEAIAGKQVACTLLQDLAHKGWQVLNSSELCRNKDLSSWFFERTNEACVNYDSTVCCIALSGFDKFQLVNFPKQLLAKVADAVRRTWTLGIQEEMKDAYGSMEMKMNGNPWSASERGAVEARRMILEIIRAMASEGYVLCMSTSIKDTTDSLFFRSASAADQPSCSELGSPDASFVLSLNRHDRLRLIEAPSEAQEVVRNVLLHHWTSGLTGDRDYHGSREFKLGGSPW----WTEGAESVRTRLLITLLLQELRDKGWRLVQTIELCRRLNDKSVFVFARAQPESSLHWCLSL--HSKSVLRFVNAPVEVVDALRLVIAGNYIHGIKTERVFAGYHQVRLRGRPW--SSHNGNDHVHGRHMMLGILEAMQQRGWSLVCSADVSAIYHHADSGQDY 466
BLAST of SMED30008680 vs. Ensembl Nematostella
Match: EDO36791 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SHJ7]) HSP 1 Score: 85.5001 bits (210), Expect = 9.583e-18 Identity = 100/489 (20.45%), Postives = 196/489 (40.08%), Query Frame = 1 Query: 7 HFMFNNT*INFHLKKMGNKYSQISTD----LYPSHYFILIFRQPDIIQAINAESDLIDNLTQVFERFWPFGIKTEKKIRFGIELKLNNNPFSNDPKPLEKLLQTNLLICEILSNVLSCGYGIVSSGYIIKSFERSTLIFRK---LNVELKVHSSSICSIILEGWNRIIINNIDEMTSSFLLKEITSLAMINILSLQSISNYLTMEMDGQPWDSHKSNSVKSPLIFLNLICLL-MQCGYKVMCKAHVTGYNDTVFFERDSGTLVNENDVFVLSLNQLDQLRTYCATSDAINAISRVIK--LQWEKGIHNDSIQDKIWICYLNGSPWSVANWDKD--SSFSSKLLMMEIFKELSKNNWEITLSIKLYRSQYDKSLFVFQRNSLNNDNNHFFSIGPHDIDRLCITGSPKCLLSQLKDRFSEHWVKGIK-EDSYENGCN--EYIMEGKPWHLTEESSSVNLDAIGFFCWALEHISDFGWSLVETADICSTSAY 1428 +M ++T + K MG S+ + P +Y + +P I IN D + + W GIK E + G L PF + + + ++ +I+ ++ G+ + + + F S F + + EL S+ S+ + I+ NI + + + I I + N L +++ G+PW K S+ + L+ L L + ++ C+ ++ D+ F +EN + L + A S+AI + +V++ W GI ++ + L GSPW W + S S+L++ + +EL ++W+I + +K + VFQ+ N ++ + P ++L + + + + +++ HW IK E Y E+ + GKPW ++ + A C+ ++ + GW L +ADI + Y Sbjct: 5 RYMLSHTHSAINSKTMGTSDSRQGKESDELQSPPNYLCVTAVKPATIHLINGGKDEQIIIQEAITESWEQGIKDETPQKHGHSWTLQEFPFGYNKQGFYCPAREIRVLSKIIQSLDKNGWLLAGVADLSRRFVFSQWFFIRGSGQHSELDYPCVSLSSV-----DTILFVNIPSQFYARIKELILKYWDKGIKESKEEENTLELQLKGKPWHG-KILSMPARLLMTQLFGLFHRKYNLELYCRLNLRCKADSFLFRPKVKESKDENTFMGICLYGKSGVLIIDAQSEAITIVRKVLQETWMWRGGIKDEKEYVACYGFTLAGSPW----WSRKRKQSAMSRLVICRLIEELQSSSWKIITGAAFSKHSMNKDMLVFQKCKPMNVSS--MCLCPVGANKLRLVNATSEIFATVRELIQTHWPTRIKRERRYRTPAAFLEFKLNGKPW---SGKTTDSFSASNMMCYIMQELQRQGWKLALSADIAAKYMY 478
BLAST of SMED30008680 vs. Ensembl Nematostella
Match: EDO30470 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T0Q1]) HSP 1 Score: 69.3218 bits (168), Expect = 1.231e-13 Identity = 51/217 (23.50%), Postives = 96/217 (44.24%), Query Frame = 1 Query: 793 LSLNQLDQLRTYCATSDAINAISRVIKLQW--EKGIHNDSIQDKIWICYLNGSPWSVANWDKDSSFSSKLLMMEIFKELSKNNWEITLSIKLYRSQYDKSLFVFQRNSLNNDNNHFFSIGP------HDIDRLCITGSPKCLLSQLKDRFSEHWVKGIK-EDSYENGCNEYIME--GKPWHLTEESSSVNLDAIGFFCWALEHISDFGWSLVETADI 1410 +SLN+ D+LR A I + +++ W GI + W L+G+PW D + S+ +M +I + L W + ++ + R Q DKS+ F ++ I P +D ++ + +P+ + +D W+KGI+ E + C Y + G PW +++ ++ C+ L+ ++ GW L+ +ADI Sbjct: 1 ISLNRNDRLRLINAPQPIIETVKQILSQYWSTRGGIQKERQYHASWEFKLSGTPWWACG---DEAVMSRFVMCKILEGLQSQGWHVRAALDMCRRQNDKSVLAFYQS--------LPKIAPVVCLSFNDECKIRLINAPQEFVGLCRDIIQARWIKGIRDEKALNTPCMAYQFKLFGNPWSGYSIVDGLHIRSM--LCFILQMLASRGWKLLISADI 204
BLAST of SMED30008680 vs. Ensembl Nematostella
Match: EDO45093 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RTU8]) HSP 1 Score: 62.003 bits (149), Expect = 8.597e-11 Identity = 50/219 (22.83%), Postives = 94/219 (42.92%), Query Frame = 1 Query: 784 VFVLSLNQLDQLR--TYCATSDAINAISRVIKLQWEKGIHNDSIQDKIWICYLNGSPWSVANWDKDS-SFSSKLLMMEIFKELSKNNWEITLSIKLYRSQYDKSLFVFQRNSLNNDNNHFFSIGPHDIDRLCITGSPKCLLSQLKDRFSEHWVKGIKEDSYEN-----GCNEYIMEGKPWHLTEESSSVNLDAIGFFCWALEHISDFGWSLVETADICS 1416 +F +SLN D +R Y A ++ V W G+ ++ + LNG+PW W ++ S ++ L++++ + L W + + R KS +FQ+++ I D+L +P LS +++ +HW K I + ++ C ++ M G PWH ++ A C+ L+ +S W V +AD+ + Sbjct: 1 MFSISLNGTDGVRLINYPANMQSVVQQVLVDNWAWRGGVASEREFYGGYEYKLNGNPW----WSEEKESIMARYLILKLLEALQGYGWHVIGGFDVSRRLTTKSTLIFQQSAPM--KTPLLCISASGSDKLRFINTPDAELSIMREIMHKHWPKKISAEKRKDTALGVSCVQFKMNGTPWHGEDDDKYY---ARSMMCFLLQALSKRSWKPVLSADVSA 210
BLAST of SMED30008680 vs. Planmine SMEST
Match: SMESG000063962.1 (SMESG000063962.1) HSP 1 Score: 956.051 bits (2470), Expect = 0.000e+0 Identity = 466/469 (99.36%), Postives = 468/469 (99.79%), Query Frame = 1 Query: 52 MGNKYSQISTDLYPSHYFILIFRQPDIIQAINAESDLIDNLTQVFERFWPFGIKTEKKIRFGIELKLNNNPFSNDPKPLEKLLQTNLLICEILSNVLSCGYGIVSSGYIIKSFERSTLIFRKLNVELKVHSSSICSIILEGWNRIIINNIDEMTSSFLLKEITSLAMINILSLQSISNYLTMEMDGQPWDSHKSNSVKSPLIFLNLICLLMQCGYKVMCKAHVTGYNDTVFFERDSGTLVNENDVFVLSLNQLDQLRTYCATSDAINAISRVIKLQWEKGIHNDSIQDKIWICYLNGSPWSVANWDKDSSFSSKLLMMEIFKELSKNNWEITLSIKLYRSQYDKSLFVFQRNSLNNDNNHFFSIGPHDIDRLCITGSPKCLLSQLKDRFSEHWVKGIKEDSYENGCNEYIMEGKPWHLTEESSSVNLDAIGFFCWALEHISDFGWSLVETADICSTSAYSPTDYIFSKV 1458 MGNKYSQISTDLYPSHYFILIFRQPDIIQAINAESDLIDNLTQVFERFWPFGIKTEKKIRFGIELKLNNNPFSNDPKPLEKLLQTNLLICEILSNVLSCGYGIVSSGYIIKSFERSTLIFRKLNVELKVHSSSICSIILEGWNRII+NNIDEMTSSFLLKEITSLAMINILSLQSISNYLTMEMDGQPWDSHKSNSVKSPL+FLNLICLLMQCGYKVMCKAHVTGYNDTVFFERDSGTLVNENDVFVLSLNQLDQLRTYCATSDAINAISRVIKLQWEKGIHNDSIQDKIWICYLNGSPWSVANWDKDSSFSSKLLMMEIFKELSKNNWEITLSIKLYRSQYDKSLFVFQRNSLNNDNNHFFSIGPHDIDRLCITGSPK LLSQLKDRFSEHWVKGIKEDSYENGCNEYIMEGKPWHLTEESSSVNLDAIGFFCWALEHISDFGWSLVETADICSTSAYSPTDYIFSKV Sbjct: 1 MGNKYSQISTDLYPSHYFILIFRQPDIIQAINAESDLIDNLTQVFERFWPFGIKTEKKIRFGIELKLNNNPFSNDPKPLEKLLQTNLLICEILSNVLSCGYGIVSSGYIIKSFERSTLIFRKLNVELKVHSSSICSIILEGWNRIIVNNIDEMTSSFLLKEITSLAMINILSLQSISNYLTMEMDGQPWDSHKSNSVKSPLVFLNLICLLMQCGYKVMCKAHVTGYNDTVFFERDSGTLVNENDVFVLSLNQLDQLRTYCATSDAINAISRVIKLQWEKGIHNDSIQDKIWICYLNGSPWSVANWDKDSSFSSKLLMMEIFKELSKNNWEITLSIKLYRSQYDKSLFVFQRNSLNNDNNHFFSIGPHDIDRLCITGSPKGLLSQLKDRFSEHWVKGIKEDSYENGCNEYIMEGKPWHLTEESSSVNLDAIGFFCWALEHISDFGWSLVETADICSTSAYSPTDYIFSKV 469
BLAST of SMED30008680 vs. Planmine SMEST
Match: SMESG000064344.1 (SMESG000064344.1) HSP 1 Score: 50.0618 bits (118), Expect = 3.044e-6 Identity = 63/294 (21.43%), Postives = 118/294 (40.14%), Query Frame = 1 Query: 622 SHKSNSVKSPLIFLNLICLLMQCGYKVMCKAHVT---GYNDTVFFERDSGTLVN----ENDVFVLSLNQLDQLRTYCATSDAINAISRVIKLQWEKGIHNDS-IQDKI--WICYLNGSPWSVANWDKDSSFSSKLLMMEIFKELSKNNWEITLSIKLYRSQYDKSLFVFQRNSLNND-----NNHFFSIGPHDIDRLCITGSPKCLLSQLKDRFSEHWVKGIKEDSYENGCNEYIMEGKPWHLTEESSSVNLDAIGFFCWALEHISDFGWSLVETADICSTSAYSPTDYIFSKV 1458 S +S+S K L+F L + G+ ++ +T + +F+ D+ L++ EN+ + L+ D + + N I I+ W KG N I+D + W LNG PWS S ++ L++ + + +S +NW + S + + D F Q N LN D ++F + + L I G L + + ++ KG K ++ + K W E + + + ++ GW E+ D C+ + +F++V Sbjct: 76 SFQSDSAKFKLMFCKFHKLFYKHGWSLVSSPTLTFSVSLSSWFYFKYDNPFLLHDKKVENEFCAIGLSNTDGFQFINFPIELENPIINCIRQNWTKGTKNKKLIKDTVNLWSLQLNGFPWSCYG---KQSVDARYLVLCLIRFMSHHNWRLVNSTAMKQDASDTMFFRSQSNMLNVDCPESMPEYYFMLALINPGSLSILGCDANLGQFIANSCDKYETKGSKLLYTKHNYVSLDLNSKVWSRRNEKET---ETRRLMTCLFQDLAAIGWIPTESID-CTRHITDLSSILFTRV 362 The following BLAST results are available for this feature:
BLAST of SMED30008680 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30008680 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30008680 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30008680 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30008680 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30008680 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30008680 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SMED30008680 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30008680 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of SMED30008680 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30008680 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30008680 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 3
BLAST of SMED30008680 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SMED30008680 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 2
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30008680 ID=SMED30008680|Name=SMED30008680|organism=Schmidtea mediterranea sexual|type=transcript|length=1523bpback to top protein sequence of SMED30008680-orf-1 >SMED30008680-orf-1 ID=SMED30008680-orf-1|Name=SMED30008680-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=470bp MGNKYSQISTDLYPSHYFILIFRQPDIIQAINAESDLIDNLTQVFERFWPback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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