SMED30008674
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30008674 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 5
Alignments
SMED30008674 aligns in the following genomic locations:
Homology
BLAST of SMED30008674 vs. Ensembl Human
Match: POLR2K (RNA polymerase II subunit K [Source:HGNC Symbol;Acc:HGNC:9198]) HSP 1 Score: 66.2402 bits (160), Expect = 7.565e-16 Identity = 29/58 (50.00%), Postives = 41/58 (70.69%), Query Frame = -1 Query: 26 MNNSSEAKQVVQKPIIYVCGECRKDIEMKPKDIIRCSECGCRILFKKRTLRLSVFEGR 199 M+ + + Q+P+IY+CGEC + E+K +D IRC ECG RI++KKRT RL VF+ R Sbjct: 1 MDTQKDVQPPKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58
BLAST of SMED30008674 vs. Ensembl Human
Match: POLR2K (RNA polymerase II subunit K [Source:HGNC Symbol;Acc:HGNC:9198]) HSP 1 Score: 57.3806 bits (137), Expect = 2.668e-12 Identity = 25/51 (49.02%), Postives = 36/51 (70.59%), Query Frame = -1 Query: 47 MNNSSEAKQVVQKPIIYVCGECRKDIEMKPKDIIRCSECGCRILFKKRTLR 199 M+ + + Q+P+IY+CGEC + E+K +D IRC ECG RI++KKRT R Sbjct: 1 MDTQKDVQPPKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKR 51
BLAST of SMED30008674 vs. Ensembl Celegans
Match: rpb-12 (RNA Polymerase II (B) subunit [Source:UniProtKB/TrEMBL;Acc:X5M5N4]) HSP 1 Score: 59.6918 bits (143), Expect = 1.120e-13 Identity = 26/44 (59.09%), Postives = 34/44 (77.27%), Query Frame = -1 Query: 26 IIYVCGECRKDIEMKPKDIIRCSECGCRILFKKRTLRLSVFEGR 157 +IY+CGEC + E+KPKD IRC ECG RIL+KKR +L V++ R Sbjct: 19 MIYICGECHAENEIKPKDAIRCRECGYRILYKKRCRKLMVYDAR 62
BLAST of SMED30008674 vs. Ensembl Fly
Match: Rpb12 (gene:FBgn0262954 transcript:FBtr0112379) HSP 1 Score: 65.4698 bits (158), Expect = 7.615e-16 Identity = 28/56 (50.00%), Postives = 40/56 (71.43%), Query Frame = -1 Query: 26 NSSEAKQVVQKPIIYVCGECRKDIEMKPKDIIRCSECGCRILFKKRTLRLSVFEGR 193 + + +K V+ + Y+CGEC + EM+P+D IRC ECG RI++KKRT RL VF+ R Sbjct: 2 SETSSKDNVKTAMTYICGECHHENEMRPRDPIRCRECGYRIMYKKRTKRLVVFDAR 57
BLAST of SMED30008674 vs. Ensembl Zebrafish
Match: polr2k (polymerase (RNA) II (DNA directed) polypeptide K [Source:ZFIN;Acc:ZDB-GENE-070820-18]) HSP 1 Score: 65.855 bits (159), Expect = 6.259e-16 Identity = 29/58 (50.00%), Postives = 42/58 (72.41%), Query Frame = -1 Query: 26 MNNSSEAKQVVQKPIIYVCGECRKDIEMKPKDIIRCSECGCRILFKKRTLRLSVFEGR 199 M++ + + Q+P+IY+CGEC + E+K +D IRC ECG RI++KKRT RL VF+ R Sbjct: 1 MDSQKDIQPPKQQPMIYICGECHTENEIKARDPIRCRECGYRIMYKKRTKRLVVFDAR 58
BLAST of SMED30008674 vs. Ensembl Xenopus
Match: polr2k (polymerase (RNA) II subunit K [Source:NCBI gene;Acc:549263]) HSP 1 Score: 66.6254 bits (161), Expect = 4.426e-16 Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = -1 Query: 26 MNNSSEAKQVVQKPIIYVCGECRKDIEMKPKDIIRCSECGCRILFKKRTLRLSVFEGR 199 M +A Q+P+IY+CGEC + E+K +D IRC ECG RI++KKRT RL VF+ R Sbjct: 1 MEGQKDAPPPKQQPMIYICGECHTENEIKARDPIRCRECGYRIMYKKRTKRLVVFDAR 58
BLAST of SMED30008674 vs. Ensembl Xenopus
Match: polr2k (polymerase (RNA) II subunit K [Source:NCBI gene;Acc:549263]) HSP 1 Score: 60.077 bits (144), Expect = 2.418e-13 Identity = 27/55 (49.09%), Postives = 37/55 (67.27%), Query Frame = -1 Query: 35 MNNSSEAKQVVQKPIIYVCGECRKDIEMKPKDIIRCSECGCRILFKKRTLRLSVF 199 M +A Q+P+IY+CGEC + E+K +D IRC ECG RI++KKRT R +F Sbjct: 1 MEGQKDAPPPKQQPMIYICGECHTENEIKARDPIRCRECGYRIMYKKRTKRCILF 55
BLAST of SMED30008674 vs. Ensembl Mouse
Match: Polr2k (polymerase (RNA) II (DNA directed) polypeptide K [Source:MGI Symbol;Acc:MGI:102725]) HSP 1 Score: 68.5514 bits (166), Expect = 1.551e-16 Identity = 30/60 (50.00%), Postives = 42/60 (70.00%), Query Frame = -1 Query: 26 LNMNNSSEAKQVVQKPIIYVCGECRKDIEMKPKDIIRCSECGCRILFKKRTLRLSVFEGR 205 L M+ + + Q+P+IY+CGEC + E+K +D IRC ECG RI++KKRT RL VF+ R Sbjct: 40 LTMDAQKDVQPPKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 99
BLAST of SMED30008674 vs. Ensembl Mouse
Match: Polr2k (polymerase (RNA) II (DNA directed) polypeptide K [Source:MGI Symbol;Acc:MGI:102725]) HSP 1 Score: 65.855 bits (159), Expect = 8.047e-16 Identity = 29/58 (50.00%), Postives = 41/58 (70.69%), Query Frame = -1 Query: 26 MNNSSEAKQVVQKPIIYVCGECRKDIEMKPKDIIRCSECGCRILFKKRTLRLSVFEGR 199 M+ + + Q+P+IY+CGEC + E+K +D IRC ECG RI++KKRT RL VF+ R Sbjct: 1 MDAQKDVQPPKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58
BLAST of SMED30008674 vs. UniProt/SwissProt
Match: sp|P53803|RPAB4_HUMAN (DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Homo sapiens OX=9606 GN=POLR2K PE=1 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 3.633e-15 Identity = 29/58 (50.00%), Postives = 41/58 (70.69%), Query Frame = -1 Query: 26 MNNSSEAKQVVQKPIIYVCGECRKDIEMKPKDIIRCSECGCRILFKKRTLRLSVFEGR 199 M+ + + Q+P+IY+CGEC + E+K +D IRC ECG RI++KKRT RL VF+ R Sbjct: 1 MDTQKDVQPPKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58
BLAST of SMED30008674 vs. UniProt/SwissProt
Match: sp|Q3ZBC0|RPAB4_BOVIN (DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Bos taurus OX=9913 GN=POLR2K PE=1 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 3.633e-15 Identity = 29/58 (50.00%), Postives = 41/58 (70.69%), Query Frame = -1 Query: 26 MNNSSEAKQVVQKPIIYVCGECRKDIEMKPKDIIRCSECGCRILFKKRTLRLSVFEGR 199 M+ + + Q+P+IY+CGEC + E+K +D IRC ECG RI++KKRT RL VF+ R Sbjct: 1 MDTQKDVQPPKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58
BLAST of SMED30008674 vs. UniProt/SwissProt
Match: sp|Q63871|RPAB4_MOUSE (DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Mus musculus OX=10090 GN=Polr2k PE=3 SV=2) HSP 1 Score: 65.855 bits (159), Expect = 5.629e-15 Identity = 29/58 (50.00%), Postives = 41/58 (70.69%), Query Frame = -1 Query: 26 MNNSSEAKQVVQKPIIYVCGECRKDIEMKPKDIIRCSECGCRILFKKRTLRLSVFEGR 199 M+ + + Q+P+IY+CGEC + E+K +D IRC ECG RI++KKRT RL VF+ R Sbjct: 1 MDAQKDVQPPKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58
BLAST of SMED30008674 vs. UniProt/SwissProt
Match: sp|Q9FLM8|NRPBC_ARATH (DNA-directed RNA polymerases II, IV and V subunit 12 OS=Arabidopsis thaliana OX=3702 GN=NRPB12 PE=1 SV=1) HSP 1 Score: 54.299 bits (129), Expect = 1.432e-10 Identity = 23/46 (50.00%), Postives = 34/46 (73.91%), Query Frame = -1 Query: 26 KPIIYVCGECRKDIEMKPKDIIRCSECGCRILFKKRTLRLSVFEGR 163 +P+ YVCG+C ++ +K D+I+C ECG RIL+KKRT R+ +E R Sbjct: 6 EPVTYVCGDCGQENTLKSGDVIQCRECGYRILYKKRTRRVVQYEAR 51
BLAST of SMED30008674 vs. UniProt/SwissProt
Match: sp|Q54R66|RPAB4_DICDI (DNA-directed RNA polymerases I, II, and III subunit rpabc4 OS=Dictyostelium discoideum OX=44689 GN=polr2k PE=3 SV=1) HSP 1 Score: 51.6026 bits (122), Expect = 1.811e-9 Identity = 21/45 (46.67%), Postives = 33/45 (73.33%), Query Frame = -1 Query: 26 PIIYVCGECRKDIEMKPKDIIRCSECGCRILFKKRTLRLSVFEGR 160 P +Y+CGEC + E+KPK+ ++C +C RI++KKRT ++ FE R Sbjct: 2 PCLYICGECGAEHEIKPKEPVKCKDCTHRIMYKKRTDKMIQFEAR 46
BLAST of SMED30008674 vs. TrEMBL
Match: A0A182ILE8 (Uncharacterized protein OS=Anopheles atroparvus OX=41427 PE=4 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.490e-15 Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = -1 Query: 26 MNNSSEAKQVVQKPIIYVCGECRKDIEMKPKDIIRCSECGCRILFKKRTLRLSVFEGR 199 M+ S V++ P+IYVCGEC + EM+PKD IRC ECG RI++KKRT RL VF+ R Sbjct: 1 MSEPSSKDTVLKTPMIYVCGECHHENEMRPKDAIRCRECGYRIMYKKRTKRLIVFDAR 58
BLAST of SMED30008674 vs. TrEMBL
Match: B7QL52 (RNA polymerases I, II and III shared polypeptide, putative OS=Ixodes scapularis OX=6945 GN=8042911 PE=4 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 1.039e-14 Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = -1 Query: 26 NNSSEAKQVVQKPIIYVCGECRKDIEMKPKDIIRCSECGCRILFKKRTLRLSVFEGR 196 S E Q V+ P+IY+CGEC ++ E++P+D IRC ECG RI++KKRT RL VF+ R Sbjct: 3 GTSKEQTQTVKAPMIYICGECHQENEIRPRDPIRCRECGYRIMYKKRTKRLIVFDAR 59
BLAST of SMED30008674 vs. TrEMBL
Match: A0A3S3SI52 (RNA polymerases I: II and III shared polypeptide-like protein OS=Dinothrombium tinctorium OX=1965070 GN=B4U79_13312 PE=4 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 3.140e-14 Identity = 31/59 (52.54%), Postives = 47/59 (79.66%), Query Frame = -1 Query: 26 MNNSSEAKQV-VQKPIIYVCGECRKDIEMKPKDIIRCSECGCRILFKKRTLRLSVFEGR 199 M++SS+ +Q+ V++P++Y+C EC + E+KP+D IRC ECG RI++KKRT RL VF+ R Sbjct: 1 MDSSSKEQQIPVKQPMVYICAECHHENEIKPRDPIRCRECGYRIMYKKRTKRLIVFDAR 59
BLAST of SMED30008674 vs. TrEMBL
Match: A0A3Q7WLP4 (DNA-directed RNA polymerases I, II, and III subunit RPABC4 isoform X1 OS=Ursus arctos horribilis OX=116960 GN=POLR2K PE=4 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 3.236e-14 Identity = 31/62 (50.00%), Postives = 44/62 (70.97%), Query Frame = -1 Query: 26 YFLNMNNSSEAKQVVQKPIIYVCGECRKDIEMKPKDIIRCSECGCRILFKKRTLRLSVFEGR 211 Y L+M+ + + Q+P+IY+CGEC + E+K +D IRC ECG RI++KKRT RL VF+ R Sbjct: 28 YGLSMDTQKDVQPPKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 89
BLAST of SMED30008674 vs. TrEMBL
Match: H9GQ41 (RNA polymerase II subunit K OS=Anolis carolinensis OX=28377 GN=POLR2K PE=4 SV=2) HSP 1 Score: 70.0922 bits (170), Expect = 3.495e-14 Identity = 31/58 (53.45%), Postives = 43/58 (74.14%), Query Frame = -1 Query: 26 MNNSSEAKQVVQKPIIYVCGECRKDIEMKPKDIIRCSECGCRILFKKRTLRLSVFEGR 199 M+ ++A Q+P+IY+CGEC K+ E+K +D IRC ECG RI++KKRT RL VF+ R Sbjct: 1 MDTQNDAPPPKQQPMIYICGECHKENEIKARDPIRCRECGYRIMYKKRTKRLVVFDAR 58
BLAST of SMED30008674 vs. Ensembl Cavefish
Match: ENSAMXT00000035759.1 (RNA polymerase II subunit K [Source:NCBI gene;Acc:103021424]) HSP 1 Score: 65.4698 bits (158), Expect = 7.366e-16 Identity = 29/58 (50.00%), Postives = 41/58 (70.69%), Query Frame = -1 Query: 26 MNNSSEAKQVVQKPIIYVCGECRKDIEMKPKDIIRCSECGCRILFKKRTLRLSVFEGR 199 M+ + + Q+P+IY+CGEC + E+K +D IRC ECG RI++KKRT RL VF+ R Sbjct: 1 MDPQKDMQPPKQQPMIYICGECHTENEIKARDPIRCRECGYRIMYKKRTKRLVVFDAR 58
BLAST of SMED30008674 vs. Ensembl Cavefish
Match: ENSAMXT00000039128.1 (RNA polymerase II subunit K [Source:NCBI gene;Acc:103021424]) HSP 1 Score: 55.0694 bits (131), Expect = 3.170e-11 Identity = 25/51 (49.02%), Postives = 36/51 (70.59%), Query Frame = -1 Query: 47 MNNSSEAKQVVQKPIIYVCGECRKDIEMKPKDIIRCSECGCRILFKKRTLR 199 M+ + + Q+P+IY+CGEC + E+K +D IRC ECG RI++KKRT R Sbjct: 1 MDPQKDMQPPKQQPMIYICGECHTENEIKARDPIRCRECGYRIMYKKRTKR 51
BLAST of SMED30008674 vs. Ensembl Cavefish
Match: ENSAMXT00000035248.1 (RNA polymerase II subunit K [Source:NCBI gene;Acc:103021424]) HSP 1 Score: 55.0694 bits (131), Expect = 3.170e-11 Identity = 25/51 (49.02%), Postives = 36/51 (70.59%), Query Frame = -1 Query: 47 MNNSSEAKQVVQKPIIYVCGECRKDIEMKPKDIIRCSECGCRILFKKRTLR 199 M+ + + Q+P+IY+CGEC + E+K +D IRC ECG RI++KKRT R Sbjct: 1 MDPQKDMQPPKQQPMIYICGECHTENEIKARDPIRCRECGYRIMYKKRTKR 51
BLAST of SMED30008674 vs. Ensembl Cavefish
Match: ENSAMXT00000039750.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02001230.1:25832:28142:-1 gene:ENSAMXG00000038868.1 transcript:ENSAMXT00000039750.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 42.743 bits (99), Expect = 7.616e-7 Identity = 24/60 (40.00%), Postives = 35/60 (58.33%), Query Frame = -1 Query: 26 MNNSSEAKQVVQKPIIYVCGECRKDIEMKPKDIIRCSECGCRILFKKRTLRLS--VFEGR 199 M+ + + Q+P+IY+CG + + IRC ECG RI++KKRT LS VF+ R Sbjct: 1 MDPQKDMQPPKQQPMIYICGG-----NLTNQRPIRCRECGYRIMYKKRTRDLSVVVFDAR 55
BLAST of SMED30008674 vs. Ensembl Yeast
Match: RPC10 (RNA polymerase subunit ABC10-alpha, found in RNA pol I, II, and III; relocalizes from nucleolus to cytoplasm upon DNA replication stress [Source:SGD;Acc:S000001185]) HSP 1 Score: 49.6766 bits (117), Expect = 2.426e-10 Identity = 23/66 (34.85%), Postives = 34/66 (51.52%), Query Frame = -1 Query: 26 NFKYFLNMNNSSEA-KQVVQKPIIYVCGECRKDIEMKPKDIIRCSECGCRILFKKRTLRLSVFEGR 220 F+ N++ ++ Q + Y+C EC + + D +RC +CG RIL K RT RL FE R Sbjct: 5 GFQIPTNLDAAAAGTSQARTATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR 70
BLAST of SMED30008674 vs. Ensembl Nematostella
Match: EDO32620 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SUK1]) HSP 1 Score: 52.7582 bits (125), Expect = 3.510e-11 Identity = 23/40 (57.50%), Postives = 30/40 (75.00%), Query Frame = -1 Query: 47 QKPIIYVCGECRKDIEMKPKDIIRCSECGCRILFKKRTLR 166 Q +IY+CGEC + E+K +D IRC ECG RI++KKRT R Sbjct: 14 QHAMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTRR 53
BLAST of SMED30008674 vs. Ensembl Medaka
Match: ENSORLT00000003472.2 (pep primary_assembly:ASM223467v1:11:7021459:7022964:1 gene:ENSORLG00000002783.2 transcript:ENSORLT00000003472.2 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 55.8398 bits (133), Expect = 5.118e-12 Identity = 25/51 (49.02%), Postives = 36/51 (70.59%), Query Frame = -1 Query: 47 MNNSSEAKQVVQKPIIYVCGECRKDIEMKPKDIIRCSECGCRILFKKRTLR 199 M+ + + Q+P+IY+CGEC + E+K +D IRC ECG RI++KKRT R Sbjct: 1 MDAQKDLQPPKQQPMIYICGECHTENEIKARDPIRCRECGYRIMYKKRTKR 51 The following BLAST results are available for this feature:
BLAST of SMED30008674 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 2
BLAST of SMED30008674 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 1
BLAST of SMED30008674 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 1
BLAST of SMED30008674 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 1
BLAST of SMED30008674 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 2
BLAST of SMED30008674 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 2
BLAST of SMED30008674 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of SMED30008674 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30008674 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 4
BLAST of SMED30008674 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30008674 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 1
BLAST of SMED30008674 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of SMED30008674 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 1
BLAST of SMED30008674 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 0
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30008674 ID=SMED30008674|Name=SMED30008674|organism=Schmidtea mediterranea sexual|type=transcript|length=247bpback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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