SMED30008633

Overview
NameSMED30008633
Smed IDSMED30008633
Length (bp)1153
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30008633 (SMED30008633) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30008633 (SMED30008633) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30008633 (SMED30008633) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30008633 (SMED30008633) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30008633

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 6

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30008633SMESG000057402.1 SmedASXL_009995SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30008633SMESG000057402.1 SmedASXL_009995SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
gutSMED30008633SMESG000057402.1 dd_Smed_v4_2671_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30008633SMESG000057402.1 dd_Smed_v4_2671_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30008633SMESG000057402.1 Contig50598newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30008633SMESG000057402.1 Contig50598uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30008633 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.001046:67149..68526 -5540
Homology
[Close]
BLAST of SMED30008633 vs. TrEMBL
Match: A0A430Q543 (Uncharacterized protein OS=Schistosoma bovis OX=6184 GN=DC041_0003404 PE=4 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.666e-10
Identity = 76/284 (26.76%), Postives = 139/284 (48.94%), Query Frame = 3 
Query:   63 ISTSNSLSYKWFYKY---KYVYHKPKSYPSFENDWEHKMGFDAKLSEPIDGVTELEDYQKLPEILKKCYTNAYLDKKSLMQKEISDIAKKLQVNDFSHPLAFQFIKRTVQIRNGKKSLHDMYRDKLKYRAIRKLIQLRKADLRQLRIENGELVDRIVKQMGII-CEPEEP-RQYTDDLPRYKTVKDEAKLIKQKKVKSLREDLVQSKEKFLAMKEKELETIRKNLSEI--------------NLNIEEVLDEVIEDRR-ETLMRPIYDQKYGWFDKEKQLKAQY 854
            I +S+SL+ +W+  Y     V   PK+   ++ DWE++        E +  V  L+D+Q L E  K  +T +++ K+   Q+ +++I K+L        LA + ++ T+++R  K  L +  R      A + L+  R+  LR LR  N     RI   + I+  E  +P R YTDD            + + +++  L+ +L+ S+++F   K + L  +  +L+ +              NL ++++  EVIE+R+  TL +PI DQ + W+ KE + + QY
Sbjct:   72 ICSSSSLN-RWYLSYLRGTRVLKPPKNPFVYDRDWENEPYKPKAKDEYLLPVKSLKDFQSLDERCKNMFTYSFVYKRQEFQENLNEILKELGFEPTDDSLAAKIVRMTLELRYKKWRLKEHPRCITLKLATKCLMNARQRTLRLLRATNLSEFHRITSALKIVHYEHVDPYRSYTDD-----------PMERIRRMTVLKANLISSQQEFYTEKNETLTNLLNDLTSLVDSNHSEMKKKEAQNL-MKQLFYEVIEERQLATLHKPIEDQ-FLWYLKEAKQREQY 341
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BLAST of SMED30008633 vs. TrEMBL
Match: A0A095BXL3 (Uncharacterized protein OS=Schistosoma haematobium OX=6185 GN=MS3_01954 PE=4 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.976e-9
Identity = 77/286 (26.92%), Postives = 142/286 (49.65%), Query Frame = 3 
Query:   63 ISTSNSLSYKWFYKY---KYVYHKPKSYPSFENDWEHKMGFDAKLSEPIDGVTELEDYQKLPEILKKCYTNAYLDKKSLMQKEISDIAKKLQVNDFSHPLAFQFIKRTVQIRNGKKSLHDMYRDKLKYRAIRKLIQLRKADLRQLRIENGELVDRIVKQMGII-CEPEEP-RQYTDD--LPRYKTVKDEAKLIKQKKVKSLREDLVQSKEKFLAMKEK--------ELETIRKNLSEI------NLNIEEVLDEVIEDRRET-LMRPIYDQKYGWFDKEKQLKAQY 854
            I +S+SL+ +W+  Y     V   PK+   ++ DWE++        E +  V  L+D+Q L E  K  +T +++ K+   Q+ +++I K+L        LA + ++ T+++R  K  L +  R      A + L+  R+  LR LR  N     RI   + ++  E  +P R YTDD  + R  + ++E    + +++  L+ +L+ S+++F   K +            +  N SE+      NL ++++  EVIE+R+ T L +PI  Q + W+ KE + + QY
Sbjct:   72 ICSSSSLN-RWYLSYLRGTRVLKPPKNPFVYDRDWENEPYKPKAKDEYLLPVKSLKDFQSLDERCKNMFTYSFVYKRQEFQENLNEILKELGFEPTDDSLAAKIVRMTLELRYKKWRLKEHPRCITLKLATKCLMNARQRTLRLLRATNLSEFHRITSALKVVHYEHVDPYRLYTDDPMVQRKNSFRNECYQERIRRITVLKANLISSQQEFYTEKNEILTNLLNDLTLLVDSNNSEMKKKEAQNL-MKQLFHEVIEERQLTSLYKPIKHQ-FLWYLKEAKQREQY 354
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BLAST of SMED30008633 vs. TrEMBL
Match: G4VLA7 (Uncharacterized protein OS=Schistosoma mansoni OX=6183 GN=Smp_074210 PE=4 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 7.263e-8
Identity = 71/285 (24.91%), Postives = 142/285 (49.82%), Query Frame = 3 
Query:   63 ISTSNSLSYKWFYKY---KYVYHKPKSYPSFENDWEHKMGFDAKLSEPIDGVTELEDYQKLPEILKKCYTNAYLDKKSLMQKEISDIAKKLQVNDFSHPLAFQFIKRTVQIRNGKKSLHDMYRDKLKYRAIRKLIQLRKADLRQLRIENGELVDRIVKQMGII-CEPEEP-RQYTDD--LPRYKTVKDEAKLIKQKKVKSLREDLVQSKEKFLAMKEKELETIRKNLS-------------EINLNIEEVLDEVIEDRR-ETLMRPIYDQKYGWFDKEKQLKAQY 854
            I +S+SL+ +W+ +Y     V + PK+   ++ DWE++       +E +  +   +D+Q L E  K  +T  ++ K+   ++ ++++ +KL        LA + ++ T+++R  K  L +  R      A + LI+ R+  LR LR  N    +RI   + I+  E  +P R  TDD  + R  + ++E    +  K+   +  L+ S+++F   K K L  +  +L+             E    ++++ +EVIE+R+  +L +PI D ++ W+ KE + + Q+
Sbjct:   27 ICSSSSLN-RWYLRYLRAPRVLNPPKNPFLYDKDWENEPYKPKAKNEYLLPLKCSKDFQSLDERCKNLFTYNFVYKRQEFEENVAEMLEKLGFQPTDDSLAAKIVRMTLELRYKKWRLKEHPRCITLKLATKCLIRARQRSLRLLRATNLSEFNRITSALKIVRYEHVDPYRLCTDDPIVQRKISFRNECYQRRIAKMTVFKAKLISSEQEFYIEKNKTLTNLLGDLTLLVDSNNPETKQKEAEHLMKQLFNEVIEERQLNSLRKPIED-RFLWYTKEGEKREQF 309
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BLAST of SMED30008633 vs. TrEMBL
Match: A0A183QYE8 (Uncharacterized protein OS=Schistosoma rodhaini OX=6188 PE=4 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 9.734e-8
Identity = 71/285 (24.91%), Postives = 142/285 (49.82%), Query Frame = 3 
Query:   63 ISTSNSLSYKWFYKY---KYVYHKPKSYPSFENDWEHKMGFDAKLSEPIDGVTELEDYQKLPEILKKCYTNAYLDKKSLMQKEISDIAKKLQVNDFSHPLAFQFIKRTVQIRNGKKSLHDMYRDKLKYRAIRKLIQLRKADLRQLRIENGELVDRIVKQMGII-CEPEEP-RQYTDD--LPRYKTVKDEAKLIKQKKVKSLREDLVQSKEKFLAMKEKELETIRKNLS-------------EINLNIEEVLDEVIEDRR-ETLMRPIYDQKYGWFDKEKQLKAQY 854
            I +S+SL+ +W+ +Y     V   PK+   ++ DWE++       +E +  +   +D+Q L E  K  +T +++ K+   ++ ++++ +KL        LA + ++ T+++R  K  L +  R      A + LI+ R+  LR LR  N    +RI   + I+  E  +P R  TDD  + R  + ++E    +  K+   +  L+ S+++F   K K L  +  +L+             E    ++E+ +EVI++R+  +L +PI D ++ W+ KE + + Q+
Sbjct:   27 ICSSSSLN-RWYLRYLRAPRVLTPPKNPFLYDKDWENEPYKPKAKNEYLLPLKCSKDFQSLDERCKNLFTYSFVYKRQEFEENVAEMLEKLGFQPTDDSLAAKIVRMTLELRYKKWRLKEHPRCITLKLATKCLIRARQRSLRLLRATNLSEFNRITSALKIVRYEHVDPYRLCTDDPIVQRKISFRNECYQRRITKMTVFKAKLISSEQEFYIEKNKTLTNLLGDLTLLVDSNNPETKQKEAEHLMKELFNEVIKERQLNSLRKPIED-RFLWYTKEGEKREQF 309
[Close]
BLAST of SMED30008633 vs. TrEMBL
Match: A0A5J4NLW9 (Uncharacterized protein OS=Paragonimus westermani OX=34504 GN=DEA37_0012013 PE=4 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 6.265e-7
Identity = 68/276 (24.64%), Postives = 114/276 (41.30%), Query Frame = 3 
Query:   87 YKWFYKYKYVYHKPKSYPSFENDWEHKMGFDAKLSEPIDGVTELEDYQKLPEILKKCYTNAYLDKKSLMQKEISDIAKKLQVNDFSHPLAFQFIKRTVQIRNGKKSLHDMYRDKLKYRAIRKLIQLRKADLRQLRIENGELVDRIVKQMGIICEPEEPRQYTDDLP-------RYKTVKDEAKLIKQKKVKSLREDLVQSKEKFLAMKEKELETIRKNLSEINLN-------------IEEVLDEVIEDRRETLMRPIYDQKYGWFDKEKQLKAQY 854
            YK F++ K V   PK   SF NDWEHK        EP             P+ ++ C     + +    Q   +  A         HP     I+ T++IR  K+ L +  R+K    + R LI  R   LR LR  N    +R+ K + I      P  +  DLP       R + V+ +   ++  K+ +L+ DL  S++ F   KEK+L  + ++L+ +  N             ++ +  EVI++R+  ++         W+  E   + +Y
Sbjct:   35 YKHFFQNKTV-ELPKEVNSFPNDWEHKP------YEPFS-----------PQTVRSC-----VQQSPSFQNWSTGYAVSF------HPSPIPVIRMTMRIRFKKRMLQEHPRNKTLRASTRALINARFRTLRLLRATNLPEFNRLTKALEITGF-RHPDPF--DLPETNPIAERKRAVRADCFQLRLTKLANLKVDLAASEQTFYERKEKQLNKVLQDLASLQRNESSDENMESAKRMLKSLFQEVIKERQNEVLSGPEQDALSWYANEAIQRERY 278
[Close]
BLAST of SMED30008633 vs. Planmine SMEST
Match: SMESG000057402.1 (SMESG000057402.1)

HSP 1 Score: 464.922 bits (1195), Expect = 4.538e-166
Identity = 232/234 (99.15%), Postives = 233/234 (99.57%), Query Frame = 3 
Query:  168 MGFDAKLSEPIDGVTELEDYQKLPEILKKCYTNAYLDKKSLMQKEISDIAKKLQVNDFSHPLAFQFIKRTVQIRNGKKSLHDMYRDKLKYRAIRKLIQLRKADLRQLRIENGELVDRIVKQMGIICEPEEPRQYTDDLPRYKTVKDEAKLIKQKKVKSLREDLVQSKEKFLAMKEKELETIRKNLSEINLNIEEVLDEVIEDRRETLMRPIYDQKYGWFDKEKQLKAQYEKKVL 869
            MGFDAKLSEPIDGVTELE YQKLPEILKKCYTNAYLDKKSLMQKEISDIAKKLQVNDFSHPLAFQFIKRTVQIRNGKKSLHDMYRDKLKYRAIRKLIQLRKADLRQLRIENGELVDRIVKQMGIICEPEEPRQYTDDLPRYKTVKDEAKLIKQKKVKSLREDLVQSKEKFLAMKEKELETIRKNLSEINLNIEEVLDEVIEDRRETLM+PIYDQKYGWFDKEKQLKAQYEKKVL
Sbjct:    1 MGFDAKLSEPIDGVTELEGYQKLPEILKKCYTNAYLDKKSLMQKEISDIAKKLQVNDFSHPLAFQFIKRTVQIRNGKKSLHDMYRDKLKYRAIRKLIQLRKADLRQLRIENGELVDRIVKQMGIICEPEEPRQYTDDLPRYKTVKDEAKLIKQKKVKSLREDLVQSKEKFLAMKEKELETIRKNLSEINLNIEEVLDEVIEDRRETLMQPIYDQKYGWFDKEKQLKAQYEKKVL 234
The following BLAST results are available for this feature:
BLAST of SMED30008633 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008633 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008633 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008633 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008633 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008633 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008633 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008633 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A430Q5433.666e-1026.76Uncharacterized protein OS=Schistosoma bovis OX=61... [more]
A0A095BXL31.976e-926.92Uncharacterized protein OS=Schistosoma haematobium... [more]
G4VLA77.263e-824.91Uncharacterized protein OS=Schistosoma mansoni OX=... [more]
A0A183QYE89.734e-824.91Uncharacterized protein OS=Schistosoma rodhaini OX... [more]
A0A5J4NLW96.265e-724.64Uncharacterized protein OS=Paragonimus westermani ... [more]
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BLAST of SMED30008633 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008633 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008633 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008633 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008633 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008633 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000057402.14.538e-16699.15SMESG000057402.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30008633 ID=SMED30008633|Name=SMED30008633|organism=Schmidtea mediterranea sexual|type=transcript|length=1153bp
TTTAAATGTTTAAAACTTACTTATTGTTCAATGAATCTTTAATATTTGTT
ACTAACCGATTTATCAGTACATCCAATAGCTTATCTTACAAATGGTTTTA
TAAATATAAGTATGTTTACCACAAACCAAAATCCTATCCGTCCTTTGAAA
ATGACTGGGAACACAAAATGGGTTTTGATGCCAAATTGTCTGAACCAATT
GATGGTGTTACTGAATTGGAAGATTATCAAAAGTTGCCTGAAATTTTGAA
AAAATGTTACACAAATGCTTATTTGGATAAAAAAAGCCTTATGCAAAAAG
AAATTTCAGATATAGCAAAAAAGCTCCAAGTAAATGATTTCAGCCACCCA
TTAGCTTTTCAATTTATCAAACGAACGGTGCAAATAAGAAATGGCAAAAA
AAGTCTCCATGATATGTATCGGGACAAATTGAAATACCGTGCTATTAGAA
AGCTGATCCAATTGAGGAAAGCTGACTTGCGTCAACTGAGAATAGAGAAT
GGTGAGCTAGTCGACCGGATCGTCAAGCAAATGGGTATAATTTGCGAGCC
CGAAGAACCTAGACAATACACTGACGACCTTCCCAGGTACAAAACTGTTA
AGGACGAGGCAAAACTCATCAAACAGAAAAAAGTTAAATCATTGCGAGAA
GATTTGGTACAATCAAAAGAGAAATTCTTGGCAATGAAAGAGAAAGAATT
GGAAACTATAAGAAAGAATTTGTCGGAAATCAATCTCAATATTGAGGAGG
TTTTAGATGAGGTCATTGAGGACCGCCGAGAAACCTTGATGCGGCCGATT
TATGATCAGAAATATGGATGGTTCGACAAGGAGAAGCAACTGAAAGCACA
GTATGAAAAAAAAGTTCTGGAGAAAAAAGCGGCCAGAGAGAGGCAGCAGA
GACGCTAGGAGAACGTGTTGAAAATAAATTGTTAGGGTCTTTTATTTGAT
ATTGCAGCCCCGACTAATTGGGCTGCTCATTGTCATGGTTATTTAAATGT
TACATCGGGCGAGAGGATTCCCATAGATCAGTGTGTTTCTTAATCTTTTC
GGTGTCATGGACTTTTTATAAAATTTTAAAAGCGCTGCCCTCCTTCAATA
TATAAAATCAAAAAATTTTTTTTTACTTTGAAATCAACAATTTATTAAAC
CAG
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protein sequence of SMED30008633-orf-1

>SMED30008633-orf-1 ID=SMED30008633-orf-1|Name=SMED30008633-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=301bp
MFKTYLLFNESLIFVTNRFISTSNSLSYKWFYKYKYVYHKPKSYPSFEND
WEHKMGFDAKLSEPIDGVTELEDYQKLPEILKKCYTNAYLDKKSLMQKEI
SDIAKKLQVNDFSHPLAFQFIKRTVQIRNGKKSLHDMYRDKLKYRAIRKL
IQLRKADLRQLRIENGELVDRIVKQMGIICEPEEPRQYTDDLPRYKTVKD
EAKLIKQKKVKSLREDLVQSKEKFLAMKEKELETIRKNLSEINLNIEEVL
DEVIEDRRETLMRPIYDQKYGWFDKEKQLKAQYEKKVLEKKAARERQQRR
*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000026gut
PLANA:0000429neoblast
PLANA:0002109X1 cell
PLANA:0002111X2 cell
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 276..300
NoneNo IPR availableCOILSCoilCoilcoord: 210..252