ATP-dependent rRNA helicase RRP3

Overview
NameATP-dependent rRNA helicase RRP3
Smed IDSMED30008605
Length (bp)1809
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of ATP-dependent rRNA helicase RRP3 (SMED30008605) t-SNE clustered cells

Violin plots show distribution of expression levels for ATP-dependent rRNA helicase RRP3 (SMED30008605) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of ATP-dependent rRNA helicase RRP3 (SMED30008605) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for ATP-dependent rRNA helicase RRP3 (SMED30008605) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30008605

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30008605h1SMcG0007150 SmedASXL_015217SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30008605h1SMcG0007150 SmedASXL_015217SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Human
Match: DDX47 (DEAD-box helicase 47 [Source:HGNC Symbol;Acc:HGNC:18682])

HSP 1 Score: 300.827 bits (769), Expect = 2.950e-95
Identity = 179/439 (40.77%), Postives = 259/439 (59.00%), Query Frame = 1
Query:   22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPV-MFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHPDVELSRQDFT-RSANAIKEARKEQRE 1332
             FK+LG+ D LC+ C   GW +PT IQ  AIP+AL G DIIGLAETG GKTGAF LPILN  L  E P  +FAL+LTPTRELA QI EQF A+GS  G++S +I+GG +   Q   L     HI++ATPGR++  +E +K     L  ++ LV+DEADR+L+++FE++++ I KV+P+                  R+T LFSAT +  ++K+    L  P K  V +K Q  ++L+Q+ + +    +   L  +L                       ++ A +S ++F +TC  T+   + L  +G +A+ LH Q+SQ++R  ++++FK    +IL+ATD+ASRGLD+ HV +VVN+D+P     Y HRVGRTARAGRSG A+TFV + + + F  +E  +G   +LP  P  +      T R A A + AR E RE
Sbjct:   25 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL--ETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK-KPHIIIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD-----------------RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYIL-----------------------NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG--KKLPGFPTQDDEVMMLTERVAEAQRFARMELRE 416          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Human
Match: DDX49 (DEAD-box helicase 49 [Source:HGNC Symbol;Acc:HGNC:18684])

HSP 1 Score: 238.039 bits (606), Expect = 7.239e-71
Identity = 150/394 (38.07%), Postives = 213/394 (54.06%), Query Frame = 1
Query:   22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLH---LEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEIN 1194
             F ELG+   L + C+  G  +PT +Q   IP  L G D +G A+TG GKT AF+LPIL   L+ +   +F L+LTPTRELA QI EQF  +G   GLK  +I+GG +M  Q  EL     H+V+ATPGR+   +  S      ++ I  LV+DEADR+L     +F  D+EAI   +P +                 RQT LFSAT +  + ++ G    +P        +   +QL Q  L++   E+V + + +   HL ++ +           +HE      S I+F  TCK  + L + L K     VALHS + Q +R  A+ +FK+    ILIATD+ASRGLD+  V++V+N++ P  P  Y HRVGRTARAGR G A+T V + +
Sbjct:    3 GFAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK-LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSR-KPHVVIATPGRLADHLRSSNTFS--IKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPAR-----------------RQTLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVP--EKVKDAYLV---HLIQRFQ----------DEHEDW----SIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYD 356          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Human
Match: DDX23 (DEAD-box helicase 23 [Source:HGNC Symbol;Acc:HGNC:17347])

HSP 1 Score: 231.876 bits (590), Expect = 7.778e-66
Identity = 149/439 (33.94%), Postives = 227/439 (51.71%), Query Frame = 1
Query:   22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILN--------DWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLP-------KKSSITSKKKLAK---GQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRL------GLAGQLPVHPDVE 1266
            ++K+  +   + +V   CG+ EPT IQ+ AIP+ L   DIIG+AETG GKT AFL+P+L         D +       +A+IL PTRELA QIEE+ I  G   G+++  +IGG     Q   L      IV+ATPGR++ ++E       +L     +V+DEADRM+ + FE D++ I + +P          +   +K LA    G+ K  RQT +F+AT    +E++A   L +P  V++ +  +  ++++Q V +M   E+   L A+L       I                       I+FV   K    L   L KMG +A  LH    Q QRE A+   K G  +IL+ATD+A RG+D+  V +VVNYD+ +  + Y HR+GRT RAG+SG A+TF+ + +   F  +++ +          +L  HPD +
Sbjct:  392 SWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRL-RMGCEIVIATPGRLIDVLENRYL---VLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHK-YRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPI-----------------------IIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAILESPVSSCPPELANHPDAQ 802          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Human
Match: DDX47 (DEAD-box helicase 47 [Source:HGNC Symbol;Acc:HGNC:18682])

HSP 1 Score: 213.001 bits (541), Expect = 2.391e-62
Identity = 158/440 (35.91%), Postives = 222/440 (50.45%), Query Frame = 1
Query:   22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPV-MFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGG-EEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHPDVELSRQDFT-RSANAIKEARKEQRE 1332
             FK+LG+ D LC+ C   GW +PT IQ  AIP+AL G DIIGLAETG GKTGAF LPILN  L  E P  +FAL+LTPTRELA QI EQF A+GS  G++S +I+GG + MSQ +        HI++ATPGR++  +E +K     L  ++ LV+DEADR+L+++FE++++ I KV+P+                  R+T LFSAT +  ++K+    L  P K  V +K Q  ++L+Q+ +       +P+ F                         +S+R  S                  LNK  A A ++        R L I        ++++  DI +   D  H                  RVGRTARAGRSG A+TFV + + + F  +E  +G   +LP  P  +      T R A A + AR E RE
Sbjct:   25 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL--ETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKK--PHIIIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD-----------------RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIF------IPSKF-------------------------KSKRLGS------------------LNKFKAKARSILLATDVASRGLDIP-----HVDVVVNFDIPTHSKDYIH------------------RVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG--KKLPGFPTQDDEVMMLTERVAEAQRFARMELRE 367          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Human
Match: DDX27 (DEAD-box helicase 27 [Source:HGNC Symbol;Acc:HGNC:15837])

HSP 1 Score: 216.083 bits (549), Expect = 1.968e-60
Identity = 140/413 (33.90%), Postives = 208/413 (50.36%), Query Frame = 1
Query:   19 MNFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILND--WLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPV 1251
            ++F+++ +   L K     G+ +PT IQK+ IPV L G DI   A TG GKT AF LP+L    +  R+ PV   L+L PTREL  Q+      +     + + L +GG ++  Q   L      I++ATPGR++  +         L +IE L++DEADRML   FE  M+ I ++                     RQT LFSAT +  ++ +A   L  P ++FV++   +   L+Q     +++   PN             R G  +A+       ++      ++F  T KQ   + I L  MG     LH  LSQ QR  A+ RFK  + +IL+ATD+A+RGLD++ V+ V+N+ +P T   Y HRVGRTARAGR+G +V+ V E  R     M K +  A + PV
Sbjct:  187 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAAL-RAAPDILIATPGRLIDHLHNCPSFH--LSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHH-----------------RQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQ-----EFIRIRPN-------------REGDREAIVAALL--TRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERK----MLKEIVKAAKAPV 555          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Celegans
Match: T26G10.1 (Putative ATP-dependent RNA helicase T26G10.1 [Source:UniProtKB/Swiss-Prot;Acc:P34580])

HSP 1 Score: 292.738 bits (748), Expect = 4.767e-92
Identity = 162/403 (40.20%), Postives = 236/403 (58.56%), Query Frame = 1
Query:   22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLG 1230
            +F ELG+   LC  CQ  GW +P+ IQ++A+P AL G D+IGLAETG GKTGAF +P+L   L+  +   F L+LTPTRELA QI +QF A+GS  GL + +I+GG +M+ Q   L     HI+VATPGR+V  +E +K     L+ ++ L++DEADR+L+++FE +++ I KV+P++                 R+T LFSAT +  + K+    L  P +V V ++ +    LKQ  + +    +   L  LL  H        GN                SAIVF  TC  T  + + L ++G  AV LH Q+SQ +R  ++++FK+    IL+ TD+A+RGLD+ HV +V+NYD+P     Y HRVGRTARAGRSG A+T V + + + +  +E  LG
Sbjct:   45 SFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLDHPQ-AFFCLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALARR-PHIIVATPGRLVDHLENTKGFN--LKALKFLIMDEADRILNMDFEVELDKILKVIPRE-----------------RRTYLFSATMTKKVSKLERASLRDPARVSVSSRYKTVDNLKQHYIFVPNKYKETYLVYLLNEH-------AGN----------------SAIVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDVEAYQKIEANLG 403          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Celegans
Match: ddx-23 (DEAD boX helicase homolog [Source:UniProtKB/TrEMBL;Acc:Q95QN2])

HSP 1 Score: 225.328 bits (573), Expect = 1.856e-64
Identity = 149/446 (33.41%), Postives = 232/446 (52.02%), Query Frame = 1
Query:   22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVM----------FALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLP----KKSS--ITSKKKLAKG--QIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRL------GLAGQLPVHPDVELSRQDFT 1287
            N++E G  D++ +  +  G+ EPT IQ+ AIP+ L   D+IG+AETG GKT AFLLP+L  W+    P M          +A+I+ PTRELA QIEE+    G   G+K+  +IGG     Q  +L      +V+ATPGR++ ++E       +L     +++DEADRML + FE D++ + + +P    KK +    +++ L KG    +  RQT +F+AT SS IE++A   L +P  V + +  +  ++++Q V ++    +   L  +L       I                       I+FV   K    L   L K+G     LH    Q+QRE A+   K G ++IL+ATD+A RG+DV  V LV+NYD+ ++ + Y HR+GRT RAG+ G A+TF+   +   +  +++ L          +L  HPD +     FT
Sbjct:  302 NWEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLV-WIT-SLPKMERQEHRDLGPYAIIMAPTRELAQQIEEETNKFGKLLGIKTVSVIGGASREDQGMKL-RMGVEVVIATPGRLLDVLENRYL---LLNQCTYVILDEADRMLDMGFEPDVQKVLEYMPDTNMKKDTDEFDNEEALMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPAVVHIGSAGKPTERVEQVVYMVPEDRKRKKLVEVLESQFQPPI-----------------------IIFVNQKKGADMLSKGLTKLGFKPTVLHGGKGQDQREYALQALKEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGRTGRAGKHGKAITFLTPDDTAVYFDLKQVLVESPVSSCPPELANHPDAQSKPGVFT 718          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Celegans
Match: H20J04.4 (pep chromosome:WBcel235:II:4329023:4332507:1 gene:WBGene00019219.1 transcript:H20J04.4a.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:H20J04.4)

HSP 1 Score: 218.394 bits (555), Expect = 5.988e-64
Identity = 139/404 (34.41%), Postives = 216/404 (53.47%), Query Frame = 1
Query:   25 FKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQA-RDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQR-ALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLG 1230
            F +LG+   + +  Q       T +Q + IP  L G DI+G A TG GKT AF +PIL   L+ +   ++ALILTPTRELA QI EQF A+G    LK ++I+GG  +  Q  EL     H+VVATPGR+  L+E        + + I+  V+DEADRML  ++   ++ I + + +K                 RQT L SAT +++I  +      KP   F ++K +  +           V+R+   + +    +        +  +    K+ S++   SS ++F  TC++ + L      +G    +LHSQ+ Q QR  A+  F++    ++I TD+ASRGLD+ HV LVVN+++PQ P  Y HRVGR+ARAGR G+A++FV + + +    +E+ +G
Sbjct:   91 FSQLGVCSWITQQLQTMQIKTATPVQAACIPKILEGSDILGCARTGTGKTLAFAIPILQK-LSVDPYGIYALILTPTRELAFQIAEQFTALGKPITLKCSVIVGGRSLIHQARELSE-RPHVVVATPGRLADLIESDPDTIAKVFKKIQFFVLDEADRMLEGQYNDQLKPIFESISEK-----------------RQTLLLSATITNNINMLHRVSTRKP--YFFEDKGKDDEST---------VDRLEQKYVVCPVAVK-------DAYLVYVVKNYSEKNPKSSVMIFAQTCRECQALAYMFEGLGFRVGSLHSQIPQKQRLAALSAFRSKTLQVIICTDVASRGLDIPHVDLVVNHNVPQCPKTYIHRVGRSARAGRFGSALSFVTQYDVELLQAVEQVIG 457          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Celegans
Match: H20J04.4 (pep chromosome:WBcel235:II:4329023:4334091:1 gene:WBGene00019219.1 transcript:H20J04.4b.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:H20J04.4)

HSP 1 Score: 219.55 bits (558), Expect = 1.129e-63
Identity = 153/469 (32.62%), Postives = 236/469 (50.32%), Query Frame = 1
Query:   25 FKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQA-RDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQ----IPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLA-GQLPVHPDVELSRQDFTRSANAIKEARKE----------------QREEELKLNGFDMD 1365
            F +LG+   + +  Q       T +Q + IP  L G DI+G A TG GKT AF +PIL   L+ +   ++ALILTPTRELA QI EQF A+G    LK ++I+GG  +  Q  EL     H+VVATPGR+  L+E        + + I+  V+DEADRML  ++   ++ I + + +K                 RQT L SAT +++I  +      KP   F ++K +       +L+Q  +V     +   L  +++ +  K  +                   SS ++F  TC++ + L      +G    +LHSQ+ Q QR  A+  F++    ++I TD+ASRGLD+ HV LVVN+++PQ P  Y HRVGR+ARAGR G+A++FV + + +    +E+ +G    +L V P      +  T+    +  A+KE                 R +EL ++G D D
Sbjct:   91 FSQLGVCSWITQQLQTMQIKTATPVQAACIPKILEGSDILGCARTGTGKTLAFAIPILQK-LSVDPYGIYALILTPTRELAFQIAEQFTALGKPITLKCSVIVGGRSLIHQARELSER-PHVVVATPGRLADLIESDPDTIAKVFKKIQFFVLDEADRMLEGQYNDQLKPIFESISEK-----------------RQTLLLSATITNNINMLHRVSTRKP--YFFEDKGKDDESTVDRLEQKYVVCPVAVKDAYLVYVVKNYSEKNPK-------------------SSVMIFAQTCRECQALAYMFEGLGFRVGSLHSQIPQKQRLAALSAFRSKTLQVIICTDVASRGLDIPHVDLVVNHNVPQCPKTYIHRVGRSARAGRFGSALSFVTQYDVELLQAVEQVIGKKLDELKVSP------KHVTKYVTQVLVAKKEAELKLENQKFGEKKEINRRKELLMSGMDED 513          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Celegans
Match: H20J04.4 (pep chromosome:WBcel235:II:4329023:4334484:1 gene:WBGene00019219.1 transcript:H20J04.4b.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:H20J04.4)

HSP 1 Score: 219.55 bits (558), Expect = 1.129e-63
Identity = 153/469 (32.62%), Postives = 236/469 (50.32%), Query Frame = 1
Query:   25 FKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQA-RDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQ----IPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLA-GQLPVHPDVELSRQDFTRSANAIKEARKE----------------QREEELKLNGFDMD 1365
            F +LG+   + +  Q       T +Q + IP  L G DI+G A TG GKT AF +PIL   L+ +   ++ALILTPTRELA QI EQF A+G    LK ++I+GG  +  Q  EL     H+VVATPGR+  L+E        + + I+  V+DEADRML  ++   ++ I + + +K                 RQT L SAT +++I  +      KP   F ++K +       +L+Q  +V     +   L  +++ +  K  +                   SS ++F  TC++ + L      +G    +LHSQ+ Q QR  A+  F++    ++I TD+ASRGLD+ HV LVVN+++PQ P  Y HRVGR+ARAGR G+A++FV + + +    +E+ +G    +L V P      +  T+    +  A+KE                 R +EL ++G D D
Sbjct:   91 FSQLGVCSWITQQLQTMQIKTATPVQAACIPKILEGSDILGCARTGTGKTLAFAIPILQK-LSVDPYGIYALILTPTRELAFQIAEQFTALGKPITLKCSVIVGGRSLIHQARELSER-PHVVVATPGRLADLIESDPDTIAKVFKKIQFFVLDEADRMLEGQYNDQLKPIFESISEK-----------------RQTLLLSATITNNINMLHRVSTRKP--YFFEDKGKDDESTVDRLEQKYVVCPVAVKDAYLVYVVKNYSEKNPK-------------------SSVMIFAQTCRECQALAYMFEGLGFRVGSLHSQIPQKQRLAALSAFRSKTLQVIICTDVASRGLDIPHVDLVVNHNVPQCPKTYIHRVGRSARAGRFGSALSFVTQYDVELLQAVEQVIGKKLDELKVSP------KHVTKYVTQVLVAKKEAELKLENQKFGEKKEINRRKELLMSGMDED 513          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Fly
Match: CG9253 (gene:FBgn0032919 transcript:FBtr0081468)

HSP 1 Score: 297.36 bits (760), Expect = 1.649e-93
Identity = 171/406 (42.12%), Postives = 244/406 (60.10%), Query Frame = 1
Query:   16 KMNFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPV-MFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLG 1230
            K+ +K+LG+ + LC+ C    W  P+ IQ+ AIPVAL G D+IGLAETG GKTGAF LPIL+  L  E P   FAL+LTPTRELA QI EQF A+GS  G+K  +++GG +M  Q  +L     HI++ATPGR+V  +E  K     L+ I+ LV+DEADR+L+++FE +++ I KVLP++                 R+T LFSAT +  ++K+    L  P KV V NK Q  +QL+Q  L +    +   L  +L                       ++ A +S ++F +TC  T    + L  +G +A+ LH Q+SQN+R  A+++FK    +ILI+TD+ASRGLD+ HV +VVN+D+P     Y HRVGRTARAGRSG A+T V++ + + +  +E  LG
Sbjct:   60 KLTWKDLGLNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALL--ENPQRYFALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAK-KPHIIIATPGRLVDHLENMKGFN--LKAIKYLVMDEADRILNMDFEVELDKILKVLPRE-----------------RRTFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHIL-----------------------NELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRIEHLLG 420          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Fly
Match: CG10333 (gene:FBgn0032690 transcript:FBtr0081072)

HSP 1 Score: 225.713 bits (574), Expect = 7.397e-64
Identity = 135/405 (33.33%), Postives = 220/405 (54.32%), Query Frame = 1
Query:   22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVM---------FALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCI---------RQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFV 1182
            ++ E G   ++  +    G+ EPT IQ+ AIP+ L   DIIG+AETG GKT AFL+P+L+ W+     +          +A+I+ PTRELA QIEE+    G   G+++ +++GG    +Q   L      IV+ATPGR++ ++E       +L     +V+DEADRM+ + FE D++ I + +P  +++    + A+ + K +         RQT +F+AT    +E++A   L +P  V++ +  +  ++ +Q V +M   ++   L  +L    ++KI P                     I+FV   K    L   L K+G ++  LH    Q QRE A+   K+G  +IL+ATD+A RG+D+  V LV+NYD+ +T + Y HR+GRT RAG++G A++FV
Sbjct:  395 SWNESGFPKEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLS-WIQSLPKIERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQGFRL-RLGCEIVIATPGRLIDVLENRYL---VLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV-TNLKPDTEEAEDETKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPTERTEQIVYMMGENDKRKKLMEIL----SRKIDP-------------------PVIIFVNQKKGADVLAKGLEKLGYNSCTLHGGKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTGRAGKTGCAISFV 770          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Fly
Match: Rs1 (gene:FBgn0021995 transcript:FBtr0345935)

HSP 1 Score: 214.157 bits (544), Expect = 5.800e-60
Identity = 146/400 (36.50%), Postives = 205/400 (51.25%), Query Frame = 1
Query:   22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNR---EKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQ-FVLVMQYVE--RVPNLFALL--RFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINR 1197
            +F ++ +   L +     G+  PT IQ S IPVAL G DI G A TG GKT A++LP L   L R    K +   L+L PTREL AQ+ +    +     +   L IGG ++  Q   L   +  IV+ATPGR++  ++ +      L++IE L++DEADRML   F   M+ I     K                  RQT LFSAT S  ++ +A   L KP KVFV+N  Q+   L+Q F+ + +  E  R P L +L+   FH                            +VFV T KQ   L I L  +G  A  LH  L+Q QR  ++ +FK  + ++LIATD+A+RGLD+  V+ V+N+ +P T + Y HRVGRTARAGR+G +V+   E  R
Sbjct:  158 SFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLERLLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTTIDVGLAIGGLDVKAQEAVL-RQNPDIVIATPGRLIDHIKNTPSF--TLDSIEVLILDEADRMLDEYFAEQMKEIINSCCK-----------------TRQTMLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLICRTFH-------------------------DHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLIATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKER 512          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Fly
Match: Rs1 (gene:FBgn0021995 transcript:FBtr0088788)

HSP 1 Score: 214.157 bits (544), Expect = 5.800e-60
Identity = 146/400 (36.50%), Postives = 205/400 (51.25%), Query Frame = 1
Query:   22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNR---EKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQ-FVLVMQYVE--RVPNLFALL--RFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINR 1197
            +F ++ +   L +     G+  PT IQ S IPVAL G DI G A TG GKT A++LP L   L R    K +   L+L PTREL AQ+ +    +     +   L IGG ++  Q   L   +  IV+ATPGR++  ++ +      L++IE L++DEADRML   F   M+ I     K                  RQT LFSAT S  ++ +A   L KP KVFV+N  Q+   L+Q F+ + +  E  R P L +L+   FH                            +VFV T KQ   L I L  +G  A  LH  L+Q QR  ++ +FK  + ++LIATD+A+RGLD+  V+ V+N+ +P T + Y HRVGRTARAGR+G +V+   E  R
Sbjct:  158 SFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLERLLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTTIDVGLAIGGLDVKAQEAVL-RQNPDIVIATPGRLIDHIKNTPSF--TLDSIEVLILDEADRMLDEYFAEQMKEIINSCCK-----------------TRQTMLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLICRTFH-------------------------DHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLIATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKER 512          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Fly
Match: bel (gene:FBgn0263231 transcript:FBtr0081888)

HSP 1 Score: 208.764 bits (530), Expect = 6.199e-58
Identity = 137/388 (35.31%), Postives = 201/388 (51.80%), Query Frame = 1
Query:   79 WNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWL--------------NREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRD 1200
            +++PT +QK AIP+ + G D++  A+TG GKT AFL+PILN                 +R K     L+L PTRELA QI E+         ++  ++ GG   S+QM EL +   H++VATPGR+  ++ + K     LE I  LV+DEADRML + FE  +  I + L    +         GQ    RQT +FSATF   I+++A   L     + V       + + Q +L +   ++   L  LL       IR G      E TK       S  ++FV T K    LE +L +      ++H   +Q +RE A+  F++G+  IL+AT +A+RGLD+ HV+ V+N+DLP   + Y HR+GRT R G  G A +F NE NR+
Sbjct:  315 YDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPILNQMYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMREL-DRGCHLIVATPGRLEDMITRGKVG---LENIRFLVLDEADRMLDMGFEPQIRRIVEQLNMPPT---------GQ----RQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVYEPDKRSYLLDLL-----SSIRDG-----PEYTKD------SLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEKNRN 669          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Zebrafish
Match: ddx49 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Source:ZFIN;Acc:ZDB-GENE-031030-3])

HSP 1 Score: 230.335 bits (586), Expect = 2.137e-68
Identity = 147/397 (37.03%), Postives = 219/397 (55.16%), Query Frame = 1
Query:   22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLH---LEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNK--MQIPKQLKQ-FVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEIN 1194
             F+ LG+ + L + C+  G + PT +Q+  IP  L G D +G A+TG GKT AF+LP+L   L+ +   +F L+LTPTRELA QI EQF  +G   GLK  +I+GG +M  Q  EL     H+VVATPGR+   +  S      L  I+ L++DEADR+L     +F  D+E I   +P K                 RQT LFSAT +  ++++    + +P   F ++K  +Q  K+L Q F+L     E+V + + +   HL +          T   +H+      S I+F  TCK  + L + L +     ++LHS + Q QR   + +FK+    ILIATD+A+RGLD+  V++V+N++ P  P  Y HRVGRTARAGR+G ++T V + +
Sbjct:    3 TFESLGLSEWLIQQCKQMGISRPTAVQEKCIPAILDGRDCMGCAKTGSGKTAAFVLPVLQK-LSEDPYGVFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQGLELSK-KPHVVVATPGRLADHIRSSDTIN--LNRIQFLIMDEADRLLEQGCTDFTKDLEVILSAVPVK-----------------RQTLLFSATLTDTLQQLQSIAMNRP--FFWEHKSDVQTVKELDQRFILT---PEKVKDAYLV---HLIQ----------TFQDEHDDW----SIIIFTNTCKSCQILTMMLREFNFPTISLHSMMKQRQRFANLAKFKSNVFKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQYD 356          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Zebrafish
Match: ddx23 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Source:ZFIN;Acc:ZDB-GENE-030131-6215])

HSP 1 Score: 231.491 bits (589), Expect = 2.439e-66
Identity = 148/443 (33.41%), Postives = 229/443 (51.69%), Query Frame = 1
Query:   22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILN--------DWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKK--------------KLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRL------GLAGQLPVHPDVE 1266
            N+KE  +   + +V + CG+ +PT IQ+ AIP+ L   DIIG+AETG GKT AFL+P+L         D +       +A+IL PTRELA QIEE+ I  G   G+++  +IGG     Q   L      IV+ATPGR++ ++E       +L     +V+DEADRM+ + FE D++ I + +P    +T++K                  G+ K  RQT +F+AT    +E++A   L +P  V++ +  +  ++++Q V++M   E+   L  +L    A    P                     I+FV   K    L   L KMG +A  LH    Q QRE A+   K G  +IL+ATD+A RG+D+  V +V+NYD+ +  + Y HR+GRT RAG+SG A+TF+ + +   F  +++ +          +L  HPD +
Sbjct:  319 NWKEYSLPPHILEVIEKCGYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEDSDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRL-RMGCEIVIATPGRLIDVLENRYL---VLSRCTYVVLDEADRMIDMGFEPDVQKILEYIP----VTNQKPDTDDAEDPEKMMQNFESGKHK-YRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVILMSEGEKRKKLLEVL----ASGFEP-------------------PIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVLNYDMAKNIEDYIHRIGRTGRAGKSGVAMTFLTKEDSSVFYDLKQAILESPVSTCPPELANHPDAQ 729          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Zebrafish
Match: ddx23 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Source:ZFIN;Acc:ZDB-GENE-030131-6215])

HSP 1 Score: 231.876 bits (590), Expect = 3.736e-66
Identity = 147/443 (33.18%), Postives = 228/443 (51.47%), Query Frame = 1
Query:   22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILN--------DWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKK--------------KLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRL------GLAGQLPVHPDVE 1266
            N+KE  +   + +V + CG+ +PT IQ+ AIP+ L   DIIG+AETG GKT AFL+P+L         D +       +A+IL PTRELA QIEE+ I  G   G+++  +IGG     Q   L      IV+ATPGR++ ++E       +L     +V+DEADRM+ + FE D++ I + +P    +T++K                  G+ K  RQT +F+AT    +E++A   L +P  V++ +  +  ++++Q V++M   E+   L  +L       I                       I+FV   K    L   L KMG +A  LH    Q QRE A+   K G  +IL+ATD+A RG+D+  V +V+NYD+ +  + Y HR+GRT RAG+SG A+TF+ + +   F  +++ +          +L  HPD +
Sbjct:  379 NWKEYSLPPHILEVIEKCGYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEDSDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRL-RMGCEIVIATPGRLIDVLENRYL---VLSRCTYVVLDEADRMIDMGFEPDVQKILEYIP----VTNQKPDTDDAEDPEKMMQNFESGKHK-YRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVILMSEGEKRKKLLEVLASGFEPPI-----------------------IIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVLNYDMAKNIEDYIHRIGRTGRAGKSGVAMTFLTKEDSSVFYDLKQAILESPVSTCPPELANHPDAQ 789          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Zebrafish
Match: ddx27 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Source:ZFIN;Acc:ZDB-GENE-031001-8])

HSP 1 Score: 211.075 bits (536), Expect = 9.223e-59
Identity = 132/395 (33.42%), Postives = 201/395 (50.89%), Query Frame = 1
Query:   19 MNFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILND--WLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINR 1197
            + F+++ +   L K     G+ +PT IQK+ +PV L G DI   A TG GKT AF+LP+L    +  RE  V   L+L PTREL  Q+      +     + + L +GG ++  Q   L      +++ATPGR++  +  +      L  IE L++DEADRML   FE  M+ I ++   +                 RQT LFSAT S  ++ +A   L +P ++FV++   +   L+Q     ++V   PN             + G  +A+       ++      ++F  T KQ   + I L  MG     LH  LSQ QR  ++ RFK  + +IL+ATD+A+RGLD++ V+ V+N+ +P T   Y HRVGRTARAG+ G +V+ V E  R
Sbjct:  201 LTFQDMNLSRPLLKAISTMGFKQPTPIQKACVPVGLLGKDICACAATGTGKTAAFMLPVLERLIYKPRETQVTRVLVLVPTRELGIQVHTVARQLAQFTTISTCLAVGGLDLKSQEAAL-RAGPDVLIATPGRLIDHLHNTPSFE--LSQIEILILDEADRMLDEYFEEQMKEIIRMCAYQ-----------------RQTMLFSATMSEEVKDLASVSLKQPVRIFVNSNTDVAPYLRQ-----EFVRIRPN-------------KEGDREAIVAALL--TRTFQDHVMLFTQTKKQAHRMHILLGLMGLKVGELHGNLSQTQRLESLRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGKVGRSVSLVGETER 555          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Zebrafish
Match: ddx46 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Source:NCBI gene;Acc:321948])

HSP 1 Score: 199.134 bits (505), Expect = 6.410e-54
Identity = 130/392 (33.16%), Postives = 194/392 (49.49%), Query Frame = 1
Query:   31 ELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPV-----MFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESD-MEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNE 1188
            + GI   +    +   + +PT IQ  AIP  ++G D+IG+A+TG GKT AFLLP+    L+ ++PV       A+I+TPTRELA QI ++         L+   + GG  +S+Q+ EL    + I+V TPGR++ ++  +      L  +  +VIDEADRM  + FE   M  +  V P                   RQT +FSATF   +E +A  +L KP +V V  +  +   ++Q V+V++  ++   L  +L  +  K                       S I+FV   +    L   L K     ++LH  + Q  R+  I+ FK G   +L+AT +A+RGLDV  + LVVNY  P   + Y HR GRT RAG  G A TF+ E
Sbjct:  344 QCGISMKVLNALKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHILD-QRPVGEAEGPLAVIMTPTRELALQITKECKKFSKSLALRVVCVYGGTGISEQIAEL-KRGAEIIVCTPGRMIDMLGANNGRVTNLRRVTYVVIDEADRMFDMGFEPQVMRIVDNVRPD------------------RQTVMFSATFPRTMEALARRILSKPVEVQVGGRSVVCSDVEQHVIVIEEEKKFLKLLEILGHYQEK----------------------GSVIIFVDKQEHADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKNGACRLLVATSVAARGLDVKQLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITE 693          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Xenopus
Match: mki67 (marker of proliferation Ki-67 [Source:Xenbase;Acc:XB-GENE-6457930])

HSP 1 Score: 308.145 bits (788), Expect = 2.965e-98
Identity = 182/441 (41.27%), Postives = 264/441 (59.86%), Query Frame = 1
Query:   22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPV-MFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLF--ALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHPDVELSRQDFT-RSANAIKEARKEQRE 1332
             F+ELG+ D LC+ C+  GW +PT IQ  AIPVAL G DIIGLAETG GKTGAF LPIL   L  E P  ++AL+LTPTRELA QI EQF A+GS  G+KS +I+GG +M  Q   L     H+V+ATPGR++  +E +K     L  ++ LV+DEADR+L+++FE++++ I KV+P+                  R+T LFSAT +  ++K+    L  P K  V +K Q  ++L+QF +       +P+ F  + L + L                   ++ A +S ++F +TC  T+ + + L  +G +A+ LH Q+SQN+R  ++++FK    +IL+ATD+ASRGLD+ HV +V+N+D+P     Y HRVGRTARAGRSG A+TFV++ + + F  +E  +G   +LP  P  E        R + A + AR E RE
Sbjct:   20 TFRELGVTDVLCETCEQLGWKQPTKIQIEAIPVALQGRDIIGLAETGSGKTGAFALPILQTLL--ESPQRLYALVLTPTRELAFQISEQFEALGSTIGVKSAVIVGGIDMMSQSLALAK-KPHVVIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD-----------------RKTFLFSATMTKKVQKLQRAALKDPVKCAVSSKYQTVEKLQQFYVF------IPSKFKDSYLVYIL-------------------NELAGNSFMIFCSTCNNTQRVALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKSRSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQYDVELFQRIEHLIG--KKLPAFPTQEEEVMMLNERVSEAQRFARIELRE 411          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Xenopus
Match: mki67 (marker of proliferation Ki-67 [Source:Xenbase;Acc:XB-GENE-6457930])

HSP 1 Score: 302.753 bits (774), Expect = 3.641e-96
Identity = 180/438 (41.10%), Postives = 261/438 (59.59%), Query Frame = 1
Query:   34 LGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPV-MFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLF--ALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHPDVELSRQDFT-RSANAIKEARKEQREE 1335
            LG+ D LC+ C+  GW +PT IQ  AIPVAL G DIIGLAETG GKTGAF LPIL   L  E P  ++AL+LTPTRELA QI EQF A+GS  G+KS +I+GG +M  Q   L     H+V+ATPGR++  +E +K     L  ++ LV+DEADR+L+++FE++++ I KV+P+                  R+T LFSAT +  ++K+    L  P K  V +K Q  ++L+QF +       +P+ F  + L + L                   ++ A +S ++F +TC  T+ + + L  +G +A+ LH Q+SQN+R  ++++FK    +IL+ATD+ASRGLD+ HV +V+N+D+P     Y HRVGRTARAGRSG A+TFV++ + + F  +E  +G   +LP  P  E        R + A + AR E RE 
Sbjct:   20 LGVTDVLCETCEQLGWKQPTKIQIEAIPVALQGRDIIGLAETGSGKTGAFALPILQTLL--ESPQRLYALVLTPTRELAFQISEQFEALGSTIGVKSAVIVGGIDMMSQSLALAK-KPHVVIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD-----------------RKTFLFSATMTKKVQKLQRAALKDPVKCAVSSKYQTVEKLQQFYVF------IPSKFKDSYLVYIL-------------------NELAGNSFMIFCSTCNNTQRVALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKSRSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQYDVELFQRIEHLIG--KKLPAFPTQEEEVMMLNERVSEAQRFARIELREH 408          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Xenopus
Match: mki67 (marker of proliferation Ki-67 [Source:Xenbase;Acc:XB-GENE-6457930])

HSP 1 Score: 302.753 bits (774), Expect = 4.105e-96
Identity = 180/442 (40.72%), Postives = 262/442 (59.28%), Query Frame = 1
Query:   22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPV-MFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLF--ALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHPDVELSRQDFT-RSANAIKEARKEQREE 1335
            N+   G+ D LC+ C+  GW +PT IQ  AIPVAL G DIIGLAETG GKTGAF LPIL   L  E P  ++AL+LTPTRELA QI EQF A+GS  G+KS +I+GG +M  Q   L     H+V+ATPGR++  +E +K     L  ++ LV+DEADR+L+++FE++++ I KV+P+                  R+T LFSAT +  ++K+    L  P K  V +K Q  ++L+QF +       +P+ F  + L + L                   ++ A +S ++F +TC  T+ + + L  +G +A+ LH Q+SQN+R  ++++FK    +IL+ATD+ASRGLD+ HV +V+N+D+P     Y HRVGRTARAGRSG A+TFV++ + + F  +E  +G   +LP  P  E        R + A + AR E RE 
Sbjct:   15 NYGNPGVTDVLCETCEQLGWKQPTKIQIEAIPVALQGRDIIGLAETGSGKTGAFALPILQTLL--ESPQRLYALVLTPTRELAFQISEQFEALGSTIGVKSAVIVGGIDMMSQSLALAK-KPHVVIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD-----------------RKTFLFSATMTKKVQKLQRAALKDPVKCAVSSKYQTVEKLQQFYVF------IPSKFKDSYLVYIL-------------------NELAGNSFMIFCSTCNNTQRVALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKSRSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQYDVELFQRIEHLIG--KKLPAFPTQEEEVMMLNERVSEAQRFARIELREH 407          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Xenopus
Match: mki67 (marker of proliferation Ki-67 [Source:Xenbase;Acc:XB-GENE-6457930])

HSP 1 Score: 300.827 bits (769), Expect = 1.346e-95
Identity = 179/437 (40.96%), Postives = 260/437 (59.50%), Query Frame = 1
Query:   37 GIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPV-MFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLF--ALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHPDVELSRQDFT-RSANAIKEARKEQREE 1335
            G+ D LC+ C+  GW +PT IQ  AIPVAL G DIIGLAETG GKTGAF LPIL   L  E P  ++AL+LTPTRELA QI EQF A+GS  G+KS +I+GG +M  Q   L     H+V+ATPGR++  +E +K     L  ++ LV+DEADR+L+++FE++++ I KV+P+                  R+T LFSAT +  ++K+    L  P K  V +K Q  ++L+QF +       +P+ F  + L + L                   ++ A +S ++F +TC  T+ + + L  +G +A+ LH Q+SQN+R  ++++FK    +IL+ATD+ASRGLD+ HV +V+N+D+P     Y HRVGRTARAGRSG A+TFV++ + + F  +E  +G   +LP  P  E        R + A + AR E RE 
Sbjct:    9 GVTDVLCETCEQLGWKQPTKIQIEAIPVALQGRDIIGLAETGSGKTGAFALPILQTLL--ESPQRLYALVLTPTRELAFQISEQFEALGSTIGVKSAVIVGGIDMMSQSLALAK-KPHVVIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD-----------------RKTFLFSATMTKKVQKLQRAALKDPVKCAVSSKYQTVEKLQQFYVF------IPSKFKDSYLVYIL-------------------NELAGNSFMIFCSTCNNTQRVALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKSRSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQYDVELFQRIEHLIG--KKLPAFPTQEEEVMMLNERVSEAQRFARIELREH 396          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Xenopus
Match: mki67 (marker of proliferation Ki-67 [Source:Xenbase;Acc:XB-GENE-6457930])

HSP 1 Score: 301.212 bits (770), Expect = 1.903e-95
Identity = 179/437 (40.96%), Postives = 260/437 (59.50%), Query Frame = 1
Query:   37 GIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPV-MFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLF--ALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHPDVELSRQDFT-RSANAIKEARKEQREE 1335
            G+ D LC+ C+  GW +PT IQ  AIPVAL G DIIGLAETG GKTGAF LPIL   L  E P  ++AL+LTPTRELA QI EQF A+GS  G+KS +I+GG +M  Q   L     H+V+ATPGR++  +E +K     L  ++ LV+DEADR+L+++FE++++ I KV+P+                  R+T LFSAT +  ++K+    L  P K  V +K Q  ++L+QF +       +P+ F  + L + L                   ++ A +S ++F +TC  T+ + + L  +G +A+ LH Q+SQN+R  ++++FK    +IL+ATD+ASRGLD+ HV +V+N+D+P     Y HRVGRTARAGRSG A+TFV++ + + F  +E  +G   +LP  P  E        R + A + AR E RE 
Sbjct:   27 GVTDVLCETCEQLGWKQPTKIQIEAIPVALQGRDIIGLAETGSGKTGAFALPILQTLL--ESPQRLYALVLTPTRELAFQISEQFEALGSTIGVKSAVIVGGIDMMSQSLALAK-KPHVVIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD-----------------RKTFLFSATMTKKVQKLQRAALKDPVKCAVSSKYQTVEKLQQFYVF------IPSKFKDSYLVYIL-------------------NELAGNSFMIFCSTCNNTQRVALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKSRSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQYDVELFQRIEHLIG--KKLPAFPTQEEEVMMLNERVSEAQRFARIELREH 414          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Mouse
Match: Ddx47 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Source:MGI Symbol;Acc:MGI:1915005])

HSP 1 Score: 302.368 bits (773), Expect = 6.122e-96
Identity = 180/439 (41.00%), Postives = 258/439 (58.77%), Query Frame = 1
Query:   22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPV-MFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHPDVELSRQDFTRSAN-AIKEARKEQRE 1332
             FK+LG+ D LC+ C   GW +PT IQ  AIP+AL G DIIGLAETG GKTGAF LPILN  L  E P  +FAL+LTPTRELA QI EQF A+GS  G++  +I+GG +   Q   L     HIV+ATPGR++  +E +K     L  ++ LV+DEADR+L+++FE++++ I KV+P+                  R+T LFSAT +  ++K+    L  P K  V +K Q  ++L+Q+ L +    +   L  +L                       ++ A +S ++F +TC  T+   + L  +G +A+ LH Q+SQ++R  ++++FK    +IL+ATD+ASRGLD+ HV +VVN+D+P     Y HRVGRTARAGRSG A+TFV + + + F  +E  +G   +LPV P  +      T   N A + AR E RE
Sbjct:   25 TFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL--ETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAK-KPHIVIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD-----------------RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYIL-----------------------NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG--KKLPVFPTQDEEVMMLTERVNEAQRFARMELRE 416          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Mouse
Match: Ddx47 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Source:MGI Symbol;Acc:MGI:1915005])

HSP 1 Score: 276.174 bits (705), Expect = 7.103e-87
Identity = 164/413 (39.71%), Postives = 236/413 (57.14%), Query Frame = 1
Query:   22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPV-MFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHP 1257
             FK+LG+ D LC+ C   GW +PT IQ  AIP+AL G DIIGLAETG GKTGAF LPILN  L  E P  +FAL+LTPTRELA QI EQF A+GS  G++                          ATPGR++  +E +K     L  ++ LV+DEADR+L+++FE++++ I KV+P+                  R+T LFSAT +  ++K+    L  P K  V +K Q  ++L+Q+ L +    +   L  +L                       ++ A +S ++F +TC  T+   + L  +G +A+ LH Q+SQ++R  ++++FK    +IL+ATD+ASRGLD+ HV +VVN+D+P     Y HRVGRTARAGRSG A+TFV + + + F  +E  +G   +LPV P
Sbjct:   25 TFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL--ETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQ-------------------------CATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD-----------------RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYIL-----------------------NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG--KKLPVFP 366          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Mouse
Match: Ddx49 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Source:MGI Symbol;Acc:MGI:2136689])

HSP 1 Score: 237.269 bits (604), Expect = 8.638e-71
Identity = 147/394 (37.31%), Postives = 213/394 (54.06%), Query Frame = 1
Query:   22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLH---LEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEIN 1194
             F E+G+   L + C+  G  +PT +Q   IP  L G D +G A+TG GKT AF+LPIL   L+ +   +F L+LTPTRELA QI EQF  +G   GLK  +I+GG +M  Q  EL     H+V+ATPGR+   +  S      ++ I+ LV+DEADR+L     +F +D+E I   +P +                 RQT LFSAT +  ++++ G    +P        ++  +QL Q  L++   E+V + + +   HL +                + Q    S I+F  TCK  + L + L K     VALHS + Q +R  A+ +FK+    ILIATD+ASRGLD+  V++V+N++ P  P  Y HRVGRTARAGR G A+T V + +
Sbjct:    3 GFAEIGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK-LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSR-KPHVVIATPGRLADHLRSSNTFN--MKKIQFLVMDEADRLLEQGCTDFTTDLETILAAVPAR-----------------RQTLLFSATLTDTLKELQGLATNEPFFWEAQATVRTVEQLDQRYLLVP--EKVKDAYLV---HLVQTF--------------QDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYD 356          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Mouse
Match: Ddx23 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Source:MGI Symbol;Acc:MGI:1921601])

HSP 1 Score: 231.876 bits (590), Expect = 5.828e-66
Identity = 149/439 (33.94%), Postives = 227/439 (51.71%), Query Frame = 1
Query:   22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILN--------DWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLP-------KKSSITSKKKLAK---GQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRL------GLAGQLPVHPDVE 1266
            ++K+  +   + +V   CG+ EPT IQ+ AIP+ L   DIIG+AETG GKT AFL+P+L         D +       +A+IL PTRELA QIEE+ I  G   G+++  +IGG     Q   L      IV+ATPGR++ ++E       +L     +V+DEADRM+ + FE D++ I + +P          +   +K LA    G+ K  RQT +F+AT    +E++A   L +P  V++ +  +  ++++Q V +M   E+   L A+L       I                       I+FV   K    L   L KMG +A  LH    Q QRE A+   K G  +IL+ATD+A RG+D+  V +VVNYD+ +  + Y HR+GRT RAG+SG A+TF+ + +   F  +++ +          +L  HPD +
Sbjct:  391 SWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRL-RMGCEIVIATPGRLIDVLENRYL---VLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHK-YRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPI-----------------------IIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAILESPVSSCPPELANHPDAQ 801          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Mouse
Match: Ddx47 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Source:MGI Symbol;Acc:MGI:1915005])

HSP 1 Score: 213.386 bits (542), Expect = 3.043e-63
Identity = 149/413 (36.08%), Postives = 208/413 (50.36%), Query Frame = 1
Query:   22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPV-MFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHP 1257
             FK+LG+ D LC+ C   GW +PT IQ  AIP+AL G DIIGLAETG GKTGAF LPILN  L  E P  +FAL+LTPTRELA QI EQF A+GS  G++  +I+GG +   Q   L     HIV+ATPGR++  +E +K     L  ++ LV+DEADR+L+++FE++++ I KV+P+                  R+T LFSAT +  ++K+    L  P K  V +K Q  ++L+Q+ L +                                +K +S+R  S                  LNK  A A ++        R L I        ++++  DI +   D  H                  RVGRTARAGRSG A+TFV + + + F  +E  +G   +LPV P
Sbjct:   22 TFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL--ETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAK-KPHIVIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD-----------------RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFI-------------------------------PSKFKSKRLGS------------------LNKFKAKARSILLATDVASRGLDIP-----HVDVVVNFDIPTHSKDYIH------------------RVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG--KKLPVFP 338          
BLAST of ATP-dependent rRNA helicase RRP3 vs. UniProt/SwissProt
Match: sp|Q29S22|DDX47_BOVIN (Probable ATP-dependent RNA helicase DDX47 OS=Bos taurus OX=9913 GN=DDX47 PE=2 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 2.750e-95
Identity = 180/439 (41.00%), Postives = 258/439 (58.77%), Query Frame = 1
Query:   22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPV-MFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHPDVELSRQDFT-RSANAIKEARKEQRE 1332
             FK+LG+ D LC+ C   GW +PT IQ  AIP+AL G DIIGLAETG GKTGAF LPILN  L  E P  +FAL+LTPTRELA QI EQF A+GS  G++  +I+GG +   Q   L     HIV+ATPGR++  +E +K     L  ++ LV+DEADR+L+++FE++++ I KV+P+                  R+T LFSAT +  ++K+    L  P K  V +K Q  ++L+Q+ L +    +   L  +L                       ++ A +S ++F +TC  T+   + L  +G +A+ LH Q+SQ++R  ++++FK    +IL+ATD+ASRGLD+ HV +VVN+D+P     Y HRVGRTARAGRSG A+TFV + + + F  +E  +G   +LPV P  +      T R   A + AR E RE
Sbjct:   27 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL--ETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAK-KPHIVIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD-----------------RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYIL-----------------------NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG--KKLPVFPTQDDEVMMLTERVTEAQRFARMELRE 418          
BLAST of ATP-dependent rRNA helicase RRP3 vs. UniProt/SwissProt
Match: sp|Q9CWX9|DDX47_MOUSE (Probable ATP-dependent RNA helicase DDX47 OS=Mus musculus OX=10090 GN=Ddx47 PE=2 SV=2)

HSP 1 Score: 302.368 bits (773), Expect = 4.282e-95
Identity = 180/439 (41.00%), Postives = 258/439 (58.77%), Query Frame = 1
Query:   22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPV-MFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHPDVELSRQDFTRSAN-AIKEARKEQRE 1332
             FK+LG+ D LC+ C   GW +PT IQ  AIP+AL G DIIGLAETG GKTGAF LPILN  L  E P  +FAL+LTPTRELA QI EQF A+GS  G++  +I+GG +   Q   L     HIV+ATPGR++  +E +K     L  ++ LV+DEADR+L+++FE++++ I KV+P+                  R+T LFSAT +  ++K+    L  P K  V +K Q  ++L+Q+ L +    +   L  +L                       ++ A +S ++F +TC  T+   + L  +G +A+ LH Q+SQ++R  ++++FK    +IL+ATD+ASRGLD+ HV +VVN+D+P     Y HRVGRTARAGRSG A+TFV + + + F  +E  +G   +LPV P  +      T   N A + AR E RE
Sbjct:   25 TFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL--ETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAK-KPHIVIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD-----------------RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYIL-----------------------NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG--KKLPVFPTQDEEVMMLTERVNEAQRFARMELRE 416          
BLAST of ATP-dependent rRNA helicase RRP3 vs. UniProt/SwissProt
Match: sp|Q9H0S4|DDX47_HUMAN (Probable ATP-dependent RNA helicase DDX47 OS=Homo sapiens OX=9606 GN=DDX47 PE=1 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 1.417e-94
Identity = 179/439 (40.77%), Postives = 259/439 (59.00%), Query Frame = 1
Query:   22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPV-MFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHPDVELSRQDFT-RSANAIKEARKEQRE 1332
             FK+LG+ D LC+ C   GW +PT IQ  AIP+AL G DIIGLAETG GKTGAF LPILN  L  E P  +FAL+LTPTRELA QI EQF A+GS  G++S +I+GG +   Q   L     HI++ATPGR++  +E +K     L  ++ LV+DEADR+L+++FE++++ I KV+P+                  R+T LFSAT +  ++K+    L  P K  V +K Q  ++L+Q+ + +    +   L  +L                       ++ A +S ++F +TC  T+   + L  +G +A+ LH Q+SQ++R  ++++FK    +IL+ATD+ASRGLD+ HV +VVN+D+P     Y HRVGRTARAGRSG A+TFV + + + F  +E  +G   +LP  P  +      T R A A + AR E RE
Sbjct:   25 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL--ETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK-KPHIIIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD-----------------RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYIL-----------------------NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG--KKLPGFPTQDDEVMMLTERVAEAQRFARMELRE 416          
BLAST of ATP-dependent rRNA helicase RRP3 vs. UniProt/SwissProt
Match: sp|Q4IFI0|RRP3_GIBZE (ATP-dependent rRNA helicase RRP3 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) OX=229533 GN=RRP3 PE=3 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 3.036e-91
Identity = 168/406 (41.38%), Postives = 238/406 (58.62%), Query Frame = 1
Query:   16 KMNFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVD-NKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLG 1230
            K  FK+LG+ D LC+ C+   +  PT IQ+ +IPVAL G DIIGLAETG GKT AF LP+L   L++ +P +F L+L PTRELA QI + F A+GS   L+  +I+GG +M  Q   LG    HIVVATPGR+V  +EK+K     L T++ L++DEADR+L ++F   ++ I K +P++                 R+T LFSAT SS IE +    L  P KV +  NK Q    L Q  L + + ++  +L  L+  H                       A  S IVF  T  +T+ + I L  +G  A+ LH QLSQ+ R  A+++F++G  +IL+ATD+A+RGLD+  V +V+NYDLPQ    Y HRVGRTARAG+SG A++ V + + + ++ +E  LG
Sbjct:   59 KKTFKDLGVNDALCEACEKLNYKYPTPIQEKSIPVALQGRDIIGLAETGSGKTAAFALPVLQALLDKPQP-LFGLVLAPTRELATQIGQAFEALGSLISLRCAVIVGGLDMVPQAIALGK-KPHIVVATPGRLVDHLEKTKGFS--LRTLKYLIMDEADRLLDMDFGPSIDKILKFVPRE-----------------RRTYLFSATISSKIESLQRASLRDPVKVSISSNKYQTVSTLLQNYLFIPHPQKDVHLIYLINEH-----------------------AGQSTIVFTRTVWETQRVSILLRTLGFGAIPLHGQLSQSSRLGALNKFRSGTRDILVATDVAARGLDIPSVDVVLNYDLPQDSKTYIHRVGRTARAGKSGVAISLVTQYDLEIYLRIEAALG 420          
BLAST of ATP-dependent rRNA helicase RRP3 vs. UniProt/SwissProt
Match: sp|P34580|DDX47_CAEEL (Putative ATP-dependent RNA helicase T26G10.1 OS=Caenorhabditis elegans OX=6239 GN=T26G10.1 PE=3 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 6.063e-91
Identity = 162/403 (40.20%), Postives = 236/403 (58.56%), Query Frame = 1
Query:   22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLG 1230
            +F ELG+   LC  CQ  GW +P+ IQ++A+P AL G D+IGLAETG GKTGAF +P+L   L+  +   F L+LTPTRELA QI +QF A+GS  GL + +I+GG +M+ Q   L     HI+VATPGR+V  +E +K     L+ ++ L++DEADR+L+++FE +++ I KV+P++                 R+T LFSAT +  + K+    L  P +V V ++ +    LKQ  + +    +   L  LL  H        GN                SAIVF  TC  T  + + L ++G  AV LH Q+SQ +R  ++++FK+    IL+ TD+A+RGLD+ HV +V+NYD+P     Y HRVGRTARAGRSG A+T V + + + +  +E  LG
Sbjct:   45 SFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLDHPQ-AFFCLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALARR-PHIIVATPGRLVDHLENTKGFN--LKALKFLIMDEADRILNMDFEVELDKILKVIPRE-----------------RRTYLFSATMTKKVSKLERASLRDPARVSVSSRYKTVDNLKQHYIFVPNKYKETYLVYLLNEH-------AGN----------------SAIVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDVEAYQKIEANLG 403          
BLAST of ATP-dependent rRNA helicase RRP3 vs. TrEMBL
Match: A0A0L0C5W8 (Uncharacterized protein OS=Lucilia cuprina OX=7375 GN=FF38_07075 PE=3 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 2.701e-96
Identity = 178/412 (43.20%), Postives = 250/412 (60.68%), Query Frame = 1
Query:   19 MNFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVH 1254
            M +KELG+ D LCK C+   W  P+ IQK AIPVAL G D+IGLAETG GKTGAF LPIL   L+  +   FALILTPTRELA QI EQF A+GS  G+K  +++GG +M  Q  +LG    HI++ATPGR+V  +E  K     L+ I+ LV+DEADR+L+++FE +++ I KVLPK+                 R+T LFSAT +  ++K+    L  P KV V NK Q  +QL+Q+ + +    +   L  +L                       ++ A +S ++F +TC  T    + L  +G +A+ LH Q+SQN+R  A+++FK    +ILI+TD+ASRGLD+ HV +V+N+D+P     Y HRVGRTARAGRSG A+TFV + + + +  +E  LG   QLP++
Sbjct:   68 MTWKELGLNDTLCKSCEELKWKAPSKIQKEAIPVALQGKDVIGLAETGSGKTGAFALPILQALLDNPQR-YFALILTPTRELAFQISEQFEALGSSIGVKCCVVVGGMDMVSQALQLGK-KPHIIIATPGRLVDHLENLKGFN--LKAIKYLVMDEADRILNMDFEVELDKILKVLPKE-----------------RRTFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQYYIFIPVKYKDVYLVHIL-----------------------NELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVLNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQRIEHLLG--KQLPLY 433          
BLAST of ATP-dependent rRNA helicase RRP3 vs. TrEMBL
Match: A0A1I8PJ10 (Uncharacterized protein OS=Stomoxys calcitrans OX=35570 GN=106081731 PE=3 SV=1)

HSP 1 Score: 313.153 bits (801), Expect = 3.864e-96
Identity = 176/413 (42.62%), Postives = 252/413 (61.02%), Query Frame = 1
Query:   16 KMNFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVH 1254
            ++N+K+LG+ D LCK C+   W  P+ IQK AIPVAL G D+IGLAETG GKTGAF LPIL   L+  +   FALILTPTRELA QI EQF A+GS  G+K  +++GG +M  Q  +LG    HI++ATPGR+V  +E  K     L+ I+ LV+DEADR+L+++FE +++ I KVLP++                 R+T LFSAT +  ++K+    L  P KV V NK Q  +QL+Q+ + +    +   L  +L                       ++ A +S ++F +TC  T    + L  +G +A+ LH Q+SQN+R  A+++FK    +ILI+TD+ASRGLD+ HV +V+N+D+P     Y HRVGRTARAGRSG A+TFV + + + +  +E  LG   QLP++
Sbjct:   62 ELNWKDLGLNDTLCKACEELKWKAPSKIQKEAIPVALQGKDVIGLAETGSGKTGAFALPILQALLDSPQR-YFALILTPTRELAFQISEQFEALGSSIGVKCCVVVGGMDMVSQALQLGK-KPHIIIATPGRLVDHLENLKGFN--LKAIKYLVMDEADRILNMDFEVELDKILKVLPRE-----------------RRTFLFSATMTKKVKKLQRASLKDPVKVEVSNKFQTVEQLQQYYIFIPVKYKDVYLVHIL-----------------------NEMAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVLNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQRIEHLLG--KQLPLY 428          
BLAST of ATP-dependent rRNA helicase RRP3 vs. TrEMBL
Match: A0A1I8N8U9 (Uncharacterized protein OS=Musca domestica OX=7370 GN=101895583 PE=3 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 2.054e-95
Identity = 178/414 (43.00%), Postives = 252/414 (60.87%), Query Frame = 1
Query:   16 KMNFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPV-MFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVH 1254
            ++ +KELG+ + LCK C+   W  P+ IQK AIPVAL G D+IGLAETG GKTGAF LPIL+  L  E P   FALILTPTRELA QI EQF A+GS  G+K  +++GG +M  Q  +LG    HI++ATPGR+V  +E  K     L+ I+ LV+DEADR+L+++FE +++ I KVLPK+                 R+T LFSAT +  ++K+    L  P KV V NK Q  +QL+Q+ + +    +   L  +L                       ++ A +S ++F +TC  T    + L  +G +A+ LH Q+SQN+R  A+++FK    +ILI+TD+ASRGLD+ HV +V+N+D+P     Y HRVGRTARAGRSG A+TFV + + + +  +E  LG   QLP++
Sbjct:   68 ELTWKELGLNETLCKACEELKWKAPSKIQKEAIPVALQGKDVIGLAETGSGKTGAFALPILHALL--ENPQRYFALILTPTRELAFQISEQFEALGSSIGVKCCVVVGGMDMVSQALQLGK-KPHIIIATPGRLVDHLENLKGFN--LKAIKYLVMDEADRILNMDFEVELDKILKVLPKE-----------------RRTFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQYYIFIPVKYKDVYLVHIL-----------------------NELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVLNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQRIEHLLG--KQLPLY 434          
BLAST of ATP-dependent rRNA helicase RRP3 vs. TrEMBL
Match: W8BQX6 (Putative ATP-dependent RNA helicase DDX47 OS=Ceratitis capitata OX=7213 GN=DDX47 PE=2 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 2.062e-95
Identity = 181/415 (43.61%), Postives = 252/415 (60.72%), Query Frame = 1
Query:   19 MNFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPV-MFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFA-LLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHP 1257
            + +K+LG+ D LCK C+   W  P+ IQK AIPVAL G DIIGLAETG GKTGAF LPIL+  L  E P   FALILTPTRELA QI EQF A+GS  G+K  +++GG +M  Q  +L     HI++ATPGR+V  +E  K     L+ I+ LV+DEADR+L+++FE +++ I KVLP++                 R+T LFSAT +  ++K+    L  P KV V NK Q  +QL+Q+ +       +P  F  +   H+  ++   GN                S ++F +TC  T    + L  +G +A+ LH Q+SQN+R  A+++FK    +ILI+TD+ASRGLD+ HV +V+N+D+P     Y HRVGRTARAGRSG AVTFV + + + +  +E  LG   QLP++P
Sbjct:   56 ITWKDLGLTDALCKACEELKWKAPSKIQKEAIPVALQGKDIIGLAETGSGKTGAFALPILHALL--ENPQRYFALILTPTRELAFQISEQFEALGSSIGVKCCVVVGGMDMVSQALQLAK-KPHIIIATPGRLVDHLENMKGFN--LKAIKYLVMDEADRILNMDFEVELDKILKVLPRE-----------------RRTFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQYYIF------IPVKFKDVYLVHIINEL--AGN----------------SFMIFCSTCANTVRTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVLNFDIPTHSKDYIHRVGRTARAGRSGKAVTFVTQYDVELYQRIEHLLG--KQLPLYP 422          
BLAST of ATP-dependent rRNA helicase RRP3 vs. TrEMBL
Match: A0A5G3IX80 (Marker of proliferation Ki-67 OS=Xenopus tropicalis OX=8364 GN=mki67 PE=3 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 4.656e-95
Identity = 182/441 (41.27%), Postives = 264/441 (59.86%), Query Frame = 1
Query:   22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPV-MFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLF--ALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHPDVELSRQDFT-RSANAIKEARKEQRE 1332
             F+ELG+ D LC+ C+  GW +PT IQ  AIPVAL G DIIGLAETG GKTGAF LPIL   L  E P  ++AL+LTPTRELA QI EQF A+GS  G+KS +I+GG +M  Q   L     H+V+ATPGR++  +E +K     L  ++ LV+DEADR+L+++FE++++ I KV+P+                  R+T LFSAT +  ++K+    L  P K  V +K Q  ++L+QF +       +P+ F  + L + L                   ++ A +S ++F +TC  T+ + + L  +G +A+ LH Q+SQN+R  ++++FK    +IL+ATD+ASRGLD+ HV +V+N+D+P     Y HRVGRTARAGRSG A+TFV++ + + F  +E  +G   +LP  P  E        R + A + AR E RE
Sbjct:   20 TFRELGVTDVLCETCEQLGWKQPTKIQIEAIPVALQGRDIIGLAETGSGKTGAFALPILQTLL--ESPQRLYALVLTPTRELAFQISEQFEALGSTIGVKSAVIVGGIDMMSQSLALAK-KPHVVIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD-----------------RKTFLFSATMTKKVQKLQRAALKDPVKCAVSSKYQTVEKLQQFYVF------IPSKFKDSYLVYIL-------------------NELAGNSFMIFCSTCNNTQRVALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKSRSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQYDVELFQRIEHLIG--KKLPAFPTQEEEVMMLNERVSEAQRFARIELRE 411          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Cavefish
Match: ddx47 (DEAD-box helicase 47 [Source:NCBI gene;Acc:103034543])

HSP 1 Score: 293.508 bits (750), Expect = 1.534e-92
Identity = 170/439 (38.72%), Postives = 254/439 (57.86%), Query Frame = 1
Query:   22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHPDVELSRQDFT-RSANAIKEARKEQREE 1335
            +FKELG+ + LC+ C+  GW +PT IQ  AIPVAL G D+IGLAETG GKTGAF LPIL   L+  +  +  L+LTPTRELA QI EQF A+GS  G+K+ +++GG +M  Q   L     HIV+ATPGR++  +E +K     L  +  LV+DEADR+L+++FES+++ I KV+P++                 R T LFSAT +  ++K+    L  P K  V  K     +L+Q+ + +    +   L ++L                       ++ A +S ++F  TC   + + + L  +G +A+ LH Q+SQN+R  ++++FK    ++L+ATD+ASRGLD+ HV  V+N+D+P     Y HRVGRTARAGRSG ++TFV + + + F  +E  +G   +LP  P  E        R + A + AR E +E+
Sbjct:   29 SFKELGVTEVLCEACEQLGWKQPTKIQIEAIPVALEGRDVIGLAETGSGKTGAFALPILQTLLSHPQR-LHTLVLTPTRELAFQIAEQFEALGSSIGVKTAVVVGGIDMMSQAMVLAK-KPHIVIATPGRLIDHLENTKGFN--LRALRFLVMDEADRILNMDFESEVDKILKVIPRE-----------------RHTFLFSATMTKKVQKLQRAALKDPVKCAVSTKYATVDKLQQYYIFIPAKYKDCYLVSIL-----------------------NELAGNSFMIFCGTCNNAQRVALLLRNLGITAIPLHGQMSQNKRLGSLNKFKAKSRSVLLATDVASRGLDIPHVDCVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEALIG--KKLPAFPTQEEEVMMLVERVSEAQRFARMEMKEQ 421          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Cavefish
Match: ddx49 (DEAD-box helicase 49 [Source:NCBI gene;Acc:103043246])

HSP 1 Score: 236.113 bits (601), Expect = 1.382e-70
Identity = 168/485 (34.64%), Postives = 259/485 (53.40%), Query Frame = 1
Query:   25 FKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLH---LEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQI--PKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHPDVE------LSRQDFTRSANAIK-------EARKEQREEELKLNGFDMDFSHVNSNFSTKRAKLSAKEK 1425
            F  LG+ D L + C+  G   PT +Q+S +P  L G D +G A+TG GKT AF+LP+L   L  +   +F L+LTPTRELA QI EQF A+G   GL+  +I+GG +M  Q  EL     HIVVATPGR+   +  S      ++ I+ L++DEADR+L     +F  D+E I  V+P K                 RQT LFSAT +  ++++    + +P   F +NK ++    +L Q  ++    E+V + + +   HL +KI+           +H+      S ++F  TCK  + L + L +    A++LHS + Q QR   + +FK+    ILIATD+A+RGLD+  V++V+N++ P  P  Y HRVGRTARAGR+G ++T V + +      +E++  +  +L  +P  E      L++ + TR    IK       E ++  +++++ L G D DF     N   KR K  A+ K
Sbjct:    4 FAALGLSDWLIQQCKQMGITRPTPVQQSCVPAILAGRDCMGCAKTGSGKTAAFVLPVLQK-LAEDPYGIFCLVLTPTRELAYQIAEQFRALGKPLGLRDCIIVGGMDMVAQGLELSK-KPHIVVATPGRLADHIRSSDTFN--MKRIKFLILDEADRLLEQGCTDFTKDLEVILSVVPAK-----------------RQTLLFSATLTDTLQELKTIAMNEP--FFWENKSEVRTVDELDQRYILTP--EKVKDAYLV---HLIQKIQ----------DEHDDW----SVMIFTNTCKNCQILTMMLREFKFPAISLHSMMKQRQRFANLAKFKSNVFKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQYDIHLVNAIEEQ--IQTKLKEYPVEEKEVLKILTQVNVTRRQCEIKLESTDFGEKKEINKKKKMILEGKDPDFEEKRKNELAKRKKGKAEGK 444          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Cavefish
Match: ddx23 (DEAD-box helicase 23 [Source:NCBI gene;Acc:103037499])

HSP 1 Score: 227.639 bits (579), Expect = 1.403e-64
Identity = 147/443 (33.18%), Postives = 226/443 (51.02%), Query Frame = 1
Query:   22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILN--------DWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKK--------------KLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRL------GLAGQLPVHPDVE 1266
            N+KE  +   + +V   CG+ EPT IQ+ AIP+ L   DIIG+AETG GKT AFL+P+L         D +       +A+IL PTRELA QIEE+ I  G   G+++  +IGG     Q   L      IV+ATPGR++ ++E       +L     +V+DEADRM+ + FE D++ I + +P    +T++K                  G+ K  RQT +F+AT    +E++A   L +   V++ +  +  ++++Q V++M   E+   L  +L       I                       I+FV   K    L   L KMG +A  LH    Q QRE A+   K G  +IL+ATD+A RG+D+  V +V+NYD+ +  + Y HR+GRT RAG+SG A+TF+ + +   F  +++ +          +L  HPD +
Sbjct:  385 NWKEFDLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEDSDQGPYAVILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRL-RMGCEIVIATPGRLIDVLENRYL---VLGRCTYVVLDEADRMIDMGFEPDVQKILEYIP----VTNQKPDTDEAEDPEKMTQNFESGKHK-YRQTVMFTATMPPAVERLARSYLRRAAVVYIGSAGKPHERVEQKVILMSEGEKRKKLLEVLSRGFEPPI-----------------------IIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIHDVSMVLNYDMAKNIEDYIHRIGRTGRAGKSGVAMTFLTKEDSSVFYDLKQAILESPVSTCPPELTNHPDAQ 795          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Cavefish
Match: ddx27 (DEAD-box helicase 27 [Source:NCBI gene;Acc:103032272])

HSP 1 Score: 211.846 bits (538), Expect = 2.486e-59
Identity = 133/395 (33.67%), Postives = 200/395 (50.63%), Query Frame = 1
Query:   19 MNFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLN--REKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINR 1197
            + F+++ +   L K     G+ +PT +QK+ +PV L G DI   A TG GKT AF+LP+L   L   RE  V   L+L PTREL  Q+      +     + + L +GG ++  Q   L      I++ATPGR++  +  +      L  IE L++DEADRML   FE  M+ I ++   +                 RQT LFSAT S  ++ +A   L +P ++FV++   +   L+Q     ++V   P              R G  +A+       + +     ++F  T KQ   + I L  MG     LH  LSQ QR  ++ RFK  + +IL+ATD+A+RGLD++ V+ V+N+ +P T   Y HRVGRTARAG+ G +V+ V E  R
Sbjct:  166 LTFQDMNLSRPLLKAITTMGFKQPTPVQKACVPVGLLGKDICACAATGTGKTAAFMLPVLERLLYKPRETQVTRVLVLVPTRELGIQVHSVARQLSQFTTISTCLAVGGLDLKSQEAAL-RAGPDILIATPGRLIDHLHNTPSFE--LSQIEVLILDEADRMLDEYFEEQMKEIIRLCAYQ-----------------RQTMLFSATMSEEVKDLASVSLKQPVRIFVNSNTDVAPYLRQ-----EFVRIRP-------------AREGDREAIVAALLTRTFQ--DHVMLFTQTKKQAHRMHILLGLMGLKVGELHGNLSQTQRLESLRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGKVGRSVSLVGETER 520          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Cavefish
Match: ddx27 (DEAD-box helicase 27 [Source:NCBI gene;Acc:103032272])

HSP 1 Score: 211.846 bits (538), Expect = 4.296e-59
Identity = 133/395 (33.67%), Postives = 200/395 (50.63%), Query Frame = 1
Query:   19 MNFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLN--REKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINR 1197
            + F+++ +   L K     G+ +PT +QK+ +PV L G DI   A TG GKT AF+LP+L   L   RE  V   L+L PTREL  Q+      +     + + L +GG ++  Q   L      I++ATPGR++  +  +      L  IE L++DEADRML   FE  M+ I ++   +                 RQT LFSAT S  ++ +A   L +P ++FV++   +   L+Q     ++V   P              R G  +A+       + +     ++F  T KQ   + I L  MG     LH  LSQ QR  ++ RFK  + +IL+ATD+A+RGLD++ V+ V+N+ +P T   Y HRVGRTARAG+ G +V+ V E  R
Sbjct:  196 LTFQDMNLSRPLLKAITTMGFKQPTPVQKACVPVGLLGKDICACAATGTGKTAAFMLPVLERLLYKPRETQVTRVLVLVPTRELGIQVHSVARQLSQFTTISTCLAVGGLDLKSQEAAL-RAGPDILIATPGRLIDHLHNTPSFE--LSQIEVLILDEADRMLDEYFEEQMKEIIRLCAYQ-----------------RQTMLFSATMSEEVKDLASVSLKQPVRIFVNSNTDVAPYLRQ-----EFVRIRP-------------AREGDREAIVAALLTRTFQ--DHVMLFTQTKKQAHRMHILLGLMGLKVGELHGNLSQTQRLESLRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGKVGRSVSLVGETER 550          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000000216.1 (pep scaffold:Pmarinus_7.0:GL476721:117971:126978:-1 gene:ENSPMAG00000000186.1 transcript:ENSPMAT00000000216.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 301.982 bits (772), Expect = 3.958e-97
Identity = 174/437 (39.82%), Postives = 261/437 (59.73%), Query Frame = 1
Query:   37 GIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHPDVELSRQDFT-RSANAIKEARKEQREEELK 1344
            G+ + LC+ C+  GW +PT IQ  AIPVAL G DIIGLAETG GKTGAF LPIL   L+  +  +FAL+LTPTRELA QI EQF A+GS  G+KS +++GG +M  Q   L     H+++ATPGR+V  +E +K     +  ++ LV+DEADR+L+++FE++++ I KV+PK+                 R+T LFSAT +  ++K+    L +P K  V  K Q  ++L+Q+ + +    +   L  +L                       ++ A +S I+F +TC  T+ + + L  +G +A+ LH Q+SQN+R  ++++FK    +IL+ATD+ASRGLD+ HV +V+N+D+P     Y HRVGRTARAGRSG ++TFV++ + + F  +E  +G   +LP  P  E      T R + A + AR E +E + K
Sbjct:    1 GVTEVLCEACEQLGWKQPTKIQVEAIPVALQGKDIIGLAETGSGKTGAFALPILQALLDAPQR-LFALVLTPTRELAFQISEQFEALGSSIGIKSAVVVGGIDMMSQSLALAK-KPHVIIATPGRLVDHLENTKGFN--IRALKYLVMDEADRILNMDFETEVDKILKVIPKE-----------------RKTYLFSATMTKKVQKLQRAALKEPVKCSVSTKYQTVEKLQQYYVFIPAKFKDSYLVYIL-----------------------NELAGNSFIIFCSTCNNTQRIALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKGKARSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVSQYDVELFQRIEHLIG--KKLPAFPTNEEEVMMLTERVSEAQRFARMEMKETDGK 391          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Sea Lamprey
Match: ddx49 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Source:ZFIN;Acc:ZDB-GENE-031030-3])

HSP 1 Score: 228.024 bits (580), Expect = 2.580e-68
Identity = 150/400 (37.50%), Postives = 223/400 (55.75%), Query Frame = 1
Query:   25 FKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLH---LEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNK--MQIPKQLKQ-FVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIAS----RGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEIN 1194
            FK LG+ D L + C+  G ++PT +Q++ IP  L G D +G A+TG GKT AF+LPIL   L+ +   +F L+L PTRELA QI EQF  MG   GLK ++I+GG +  +Q  EL     H+V+ATPGR+   +  S      L+ I+ LV+DEADR+L     +F  D++ I   LP K                 RQT LFSAT +  ++++    L  P   F ++K  ++  ++L Q ++LV    ++V + + +   H+ +KI+   +                S IVF  TCK  + L + L      +VALHS + Q +R  ++ +FK+    ILIATD+AS    RGLD+  V++V+N++ P  P  Y HRVGRTARAGR+G A+T V + +
Sbjct:    7 FKRLGLDDWLMQQCKQMGISKPTPVQENCIPPILRGQDCMGCAQTGSGKTAAFVLPILQK-LSEDPFGIFCLVLAPTRELAYQIAEQFRVMGKPLGLKDSVIVGGMDSVRQAQELAR-KPHVVIATPGRLADHLRSSNTFS--LKKIQFLVMDEADRLLEQGATDFTKDLQVIL-ALPAK-----------------RQTLLFSATLTDTLQELRNLALTNP--FFWESKEPVRTVEELDQRYILV---ADKVKDAYLV---HIIQKIQDAHDDW--------------SIIVFTNTCKNCQVLNMMLRHFNFPSVALHSMMRQTERFASLSKFKSSMFKILIATDVASSFWARGLDIPTVQVVLNHNTPSLPKTYIHRVGRTARAGRNGVAITIVTQYD 362          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Sea Lamprey
Match: ddx23 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Source:ZFIN;Acc:ZDB-GENE-030131-6215])

HSP 1 Score: 224.557 bits (571), Expect = 1.446e-64
Identity = 145/427 (33.96%), Postives = 221/427 (51.76%), Query Frame = 1
Query:   58 KVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILN--------DWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLP---KKSSITSKKKLAK-------GQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRL------GLAGQLPVHPDVE 1266
            +V + CG+ +PT IQ+ AIP+ L   DIIG+AETG GKT AFL+P+L         D +       +A+IL PTRELA QIEE+ I  G   G+++  +IGG     Q   L      IV+ATPGR++ ++E       +L     +V+DEADRM+ + FE D++ I + +P   +K      +   K       G+ K  RQT +F+AT  + +E++A   L +P  V++ +  +  ++++Q V +M   E+   L  LL       I                       I+FV   K    L   L KMG +A  LH    Q QRE A+   K G  +IL+ATD+A RG+D+  V +V+NYD+ +  + Y HR+GRT RAG+SG +VTF+ + +   F  +++ +          +L  HPD +
Sbjct:  333 EVIEKCGYKDPTPIQRQAIPIGLQNRDIIGIAETGSGKTAAFLIPLLVWITTLPKIDRIEDTDQGPYAVILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRL-RMGCKIVIATPGRLIDVLENRYL---VLSRCTYVVLDEADRMIDMGFEPDVQRILEHMPVSNQKPDTDDAEDPDKMTANFESGRHK-YRQTVMFTATMPAAVERLARSYLRRPAVVYIGSVGKPIERVEQRVFIMGESEKRKKLLELLSRGFEPPI-----------------------IIFVNQKKGCDVLAKSLEKMGFNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIHDVSMVLNYDMAKNIEDYTHRIGRTGRAGKSGVSVTFLTKEDAAVFYDLKQAMLGSPVSQCPPELANHPDAQ 731          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Sea Lamprey
Match: ddx27 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Source:ZFIN;Acc:ZDB-GENE-031001-8])

HSP 1 Score: 205.297 bits (521), Expect = 1.767e-57
Identity = 136/395 (34.43%), Postives = 200/395 (50.63%), Query Frame = 1
Query:   19 MNFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILND--WLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINR 1197
            + F ++ +   L K     G+ +PT IQKS IPV L G DI   A TG GKT AF+LP+L    +  R+ PV   L+L PTREL  Q+      +     ++++L +GG ++  Q   L      I++ATPGR++  ++        L +IE L++DEADRML   FE  M+ I +                 Q    RQT LFSAT +  ++ +A   L  P K+FV++   +   L+Q     ++V   PN             R G  +A+         R      V V T +    L +   ++G     LH  LSQ QR  A+ RFK  + +IL+ATD+A+RGLD++ V+ V+N+ +P T   Y HRVGRTARAGR+G +++ V E  R
Sbjct:  219 ITFPDMNLSRPLLKAISSMGFQQPTPIQKSCIPVGLLGKDICACAATGTGKTAAFMLPVLERLVYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLSQFCNVQTSLAVGGLDIKTQEAAL-RAGPDILIATPGRLIDHLQNCPSFD--LSSIEILILDEADRMLDEYFEEQMKEIIR-----------------QCSHQRQTMLFSATMTDQVQDLAAVSLKHPVKIFVNSNTDVAPYLRQ-----EFVRIRPN-------------REGDREAIVSAL---LTRTFQDH-VMVFTHRLHILLGLLGLRVGE----LHGNLSQTQRLEALRRFKDDQIDILVATDVAARGLDIEGVKTVINFTMPSTIKHYVHRVGRTARAGRAGRSISLVGETER 567          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Sea Lamprey
Match: DDX54 (DEAD-box helicase 54 [Source:HGNC Symbol;Acc:HGNC:20084])

HSP 1 Score: 191.045 bits (484), Expect = 3.834e-55
Identity = 129/390 (33.08%), Postives = 192/390 (49.23%), Query Frame = 1
Query:   22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPV-MFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLD--VDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFV 1182
             F+ +G+   + K   G G+  PT IQ+  IPV L G D++ +A TG GKT AFL+P+      R       AL+L+PTRELA Q  +    +G   GLK+ LI+GG+ M  Q   L + +  I++ TPGR   LM    +    L+ +E +V DEADR+  + F   +  I + LP                   RQT LFSAT    + + A   L  P  + +D   ++  QLK   +  +  ++   L  LLR               T    HE        +VFV T    + L   +++ G S   ++S L Q +R++ + +F   +  +LI TD+A+RG+D  +D+   V+NY+ P  P  + HRVGR ARAGRSGTA + V
Sbjct:   34 GFQSMGLSYPVFKGVMGKGYKVPTPIQRKCIPVILEGRDVVAMARTGSGKTAAFLVPMFERLHARSAQAGARALVLSPTRELALQTSKFTKELGKHTGLKTALILGGDRMEDQFAAL-HENPDIIIGTPGR---LMHVVVEMNLKLQAMEYVVFDEADRLFEMGFAEQLTEIIRRLPDS-----------------RQTLLFSATLPKQLVEFARAGLSDPVLIRLDVDSKLSDQLKLAFMCSRADDKPCVLLHLLR---------------TVVKPHE------QTVVFVATKHHVEYLRELVSQAGMSCAYIYSALDQTERKINVGKFVHKKTMLLIVTDVAARGIDPMLDN---VINYNFPGKPKLFIHRVGRVARAGRSGTAYSLV 378          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Yeast
Match: RRP3 (Protein involved in rRNA processing; required for maturation of the 35S primary transcript of pre-rRNA and for cleavage leading to mature 18S rRNA; homologous to eIF-4a, which is a DEAD box RNA-dependent ATPase with helicase activity [Source:SGD;Acc:S000001107])

HSP 1 Score: 264.233 bits (674), Expect = 9.698e-82
Identity = 165/430 (38.37%), Postives = 240/430 (55.81%), Query Frame = 1
Query:   22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLP---VHPDVELSRQDFTRSANA 1302
            +F EL +  +L + C+   +++PT IQ  AIP AL G DIIGLA+TG GKT AF +PILN   + ++P  +A IL PTRELA QI+E F ++GS  G++ST I+GG  M  Q  +L     HI++ATPGR++  +E +K     L  ++ LV+DEADR+L +EF   ++ I K++P +                 R T LFSAT +S I+K+    L  P K  V NK Q    L Q ++V+    +   L  LL   + K                       + I+F  T    + L    N +  SA ALH  L+QNQR  ++D FK G+ +IL+ATD+A+RGLD+  V +VVNYD+P     Y HRVGRTARAGRSG +++ V++ + +  + +E+ LG   +LP   V  ++ L+ +D    AN 
Sbjct:   82 SFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQEPY-YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMR-KPHIIIATPGRLMDHLENTKGFS--LRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQE----------------RTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIGK-----------------------TMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVLG--KKLPKESVDKNIILTLRDSVDKANG 466          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Yeast
Match: DBP8 (ATPase, putative RNA helicase of the DEAD-box family; component of 90S preribosome complex involved in production of 18S rRNA and assembly of 40S small ribosomal subunit; ATPase activity stimulated by association with Esf2p [Source:SGD;Acc:S000001212])

HSP 1 Score: 226.868 bits (577), Expect = 1.969e-68
Identity = 157/443 (35.44%), Postives = 230/443 (51.92%), Query Frame = 1
Query:   22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPV-MFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVS-LMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWK---PTKVF----VDNKMQIPKQLK-QFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLG--LAGQLPVHPDVELSRQDFTRSANAIKEA 1314
            +FK LG+   L +  +     +PT IQK+ IP  L G D IG A+TG GKT AF  P+L  W   E P  MF ++LTPTRELA QI EQF A+GS   ++ ++I+GGE + QQ  +L     H ++ATPGR+   +M         L   + LV+DEAD +L   F   +      LP K                 RQT LF+AT +  ++ +    + K   P   +    VDN + IP  LK +++LV ++V+    L+ LL                    ++E++    +AI+FV      + L   L ++     +LHSQ+ Q +R  ++ RF+   A ILIATD+ASRGLD+  V LVVNYD+P  PD + HR GRTARAGR G A++FV + +  +   +E R+   +     VH D  + R+  T+   A +E+
Sbjct:    3 DFKSLGLSKWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPMLTKW--SEDPSGMFGVVLTPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIVQQALDL-QRKPHFIIATPGRLAHHIMSSGDDTVGGLMRAKYLVLDEADILLTSTFADHLATCISALPPKDK---------------RQTLLFTATITDQVKSLQNAPVQKGKPPLFAYQVESVDN-VAIPSTLKIEYILVPEHVKEA-YLYQLLTCE-----------------EYENK----TAIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQERTNSLHRFRANAARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAISFVTQRDVSRIQAIEDRINKKMTETNKVH-DTAVIRKALTKVTKAKRES 403          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Yeast
Match: DRS1 (Nucleolar DEAD-box protein required for ribosome assembly and function; including synthesis of 60S ribosomal subunits; constituent of 66S pre-ribosomal particles [Source:SGD;Acc:S000003931])

HSP 1 Score: 219.935 bits (559), Expect = 4.197e-63
Identity = 146/407 (35.87%), Postives = 216/407 (53.07%), Query Frame = 1
Query:   22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFA----LILTPTRELAAQIEE------QFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQ-FVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFI 1209
            NF  L +   + K     G+ +P+ IQ + IP+AL G DII  A TG GKT AF++PI+   L   KP   A    ++L PTRELA Q+ +      +F++ G  FGL     +GG  + QQ   L +    IV+ATPGR +  +  S  A   ++++E LV+DEADRML   F+ ++  I  +LP                   RQ  LFSAT +S I+ +    L KP ++ +D   +   +L Q FV + +     P L     F+L +K+ P G + +               +VFV   +    L I +  +G S   LH  L+Q QR  ++++FK  E  +LI TD+ASRGLD+  + +V+NYD+P++ + Y HRVGRTARAGR G +VTFV E ++D+ I
Sbjct:  232 NFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLY--KPAKIASTRVIVLLPTRELAIQVADVGKQIARFVS-GITFGL----AVGGLNLRQQEQMLKSR-PDIVIATPGRFIDHIRNS--ASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSN-----------------RQNLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALL----FNLIRKLDPTGQKRI---------------VVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRSI 592          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Yeast
Match: DBP3 (RNA-Dependent ATPase, member of DExD/H-box family; involved in cleavage of site A3 within the ITS1 spacer during rRNA processing; not essential for growth, but deletion causes severe slow-growth phenotype [Source:SGD;Acc:S000003046])

HSP 1 Score: 204.142 bits (518), Expect = 6.075e-59
Identity = 137/399 (34.34%), Postives = 215/399 (53.88%), Query Frame = 1
Query:   79 WNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPV-MFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIP--KQLKQFVLVMQYVERVPNLFALLR-FHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHPDV 1263
            + +PT IQ  A P  L+G D++G+AETG GKT AF +P ++  +N +K   +  L+++PTRELA+QI +  I +  + G++   + GG    +Q  +L    S +VVATPGR++ L+++       L  +  LV+DEADRML   FE D++ I +      +  SK           RQT +F+AT+   + ++A   +  P KV + N  Q+   K++ Q V V+    +   L  LL+ +H      P  N+ V               ++F    K+   +E  L   G +  A+H  LSQ QR  A++ FK+G++N+L+ATD+A+RGLD+ +V+ V+N   P T + Y HR+GRT RAG++GTA T   E  +    G+   L  A Q PV  D+
Sbjct:  132 FPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHLMNDQKKRGIQVLVISPTRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQLKK--SQVVVATPGRLLDLLQEGSVD---LSQVNYLVLDEADRMLEKGFEEDIKNIIR-----ETDASK-----------RQTLMFTATWPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLLELLKKYHSG----PKKNEKV---------------LIFALYKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEQEKHLAGGLVNVLNGANQ-PVPEDL 489          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Yeast
Match: DBP2 (ATP-dependent RNA helicase of the DEAD-box protein family; has strong preference for dsRNA; interacts with YRA1; required for assembly of Yra1p, Nab2p and Mex67p onto mRNA and formation of nuclear mRNP; involved in mRNA decay and rRNA processing; may be involved in suppression of transcription from cryptic initiation sites [Source:SGD;Acc:S000005056])

HSP 1 Score: 199.519 bits (506), Expect = 4.378e-57
Identity = 128/398 (32.16%), Postives = 209/398 (52.51%), Query Frame = 1
Query:   25 FKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVM------FALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDN-KMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINR 1197
            F E G  D +    +  G+++PT IQ    P+AL+G D++G+A TG GKT ++ LP +   +N  +P++        L+L PTRELA QI+ +    G    +++T + GG   SQQ+ +L    S IV+ATPGR++ ++E  K     L+ +  LV+DEADRML + FE  +  I                   QI+  RQT ++SAT+   ++++A   L  P +V V + ++     + Q V V+   E+   L   L                 ET   +++      ++F +T +    +  YL + G  A+A+H    Q +R+  +  F+ G + I++ATD+A+RG+DV  +  V+NYD+P   + Y HR+GRT RAG +GTA++F  E N+
Sbjct:  115 FDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVH-IN-AQPLLAPGDGPIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDLSR-GSEIVIATPGRLIDMLEIGKTN---LKRVTYLVLDEADRMLDMGFEPQIRKIVD-----------------QIRPDRQTLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKYL-----------------ETASQDNE---YKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNK 469          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Nematostella
Match: EDO33593 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SRU4])

HSP 1 Score: 300.442 bits (768), Expect = 6.395e-96
Identity = 182/442 (41.18%), Postives = 259/442 (58.60%), Query Frame = 1
Query:   16 KMNFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLF--ALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHPDVELSRQDFT-RSANAIKEARKEQRE 1332
            K  FK LG+ D LC+ C+  GW  P+ IQ+ AIPVAL G D+IGLAETG GKTGAF LPIL   L+  +  +FALILTPTRELA QI EQ  A+GS  G+K  +I+GG +M  Q   L     HI++ATPGR++  +E +K     L T++ LV+DEADR+L+++FE +++ + KV+PK+                 R+T LFSAT +  ++K+    L  P KV V  K Q  ++L+Q  L       +P+ F    L + L                   ++ A +S +VF  TC   + + + L  +G  AV LH Q+SQ++R  A+++FK+   +IL+ATD+ASRGLD+ HV +V+N+D+P     Y HRVGRTARAGRSG +VTFV + + + +  +E    +A +LP +P VE        R   A + AR E RE
Sbjct:   13 KTTFKSLGVVDALCEACKQLGWKTPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILQALLDNPQR-LFALILTPTRELAFQISEQCEALGSGIGVKCAVIVGGIDMMSQALMLAK-KPHIIIATPGRLIDHLENTKGFS--LRTLKYLVMDEADRILNMDFEKEVDKLLKVIPKE-----------------RRTFLFSATMTKKVQKLQRASLQAPVKVEVATKYQTVEKLQQSYLF------IPSKFKDCYLVYVL-------------------NELAGNSFMVFCGTCNNVQRVTLMLRNLGLDAVPLHGQMSQSKRLGALNKFKSKSRSILVATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGRSVTFVTQYDVELYQRIEHL--IAKKLPQYPTVEEEVMLLMERVTEAQRYARMELRE 406          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Nematostella
Match: EDO43011 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RZV2])

HSP 1 Score: 243.047 bits (619), Expect = 5.576e-74
Identity = 155/405 (38.27%), Postives = 219/405 (54.07%), Query Frame = 1
Query:   22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFS---SHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRL 1227
            +F  LG+   L   C   G  +PT+IQ + +P  L G D IG A+TG GKT AF LPIL    +    + FA++LTPTRELA QI +QF  +G   GLK  +I+GG +M +Q   L N   H+V+ATPGR+   ++ +      L+ I+ LV+DEADR+L   F  D++ I   +P+K                 RQT LFSAT +     ++K++G    +P    V + +    +L Q  L+     R   L  LLR +         NQ+V               IVF  TCK  + L    +K+G + V LHS LSQ +R  A+ RFK+G   IL+ATD+ASRGLD+  V LVVN ++P  P  Y HRVGRTARAGR G A++ V + + D+   +E+++
Sbjct:    8 SFAGLGLNKWLVSQCVAMGIKKPTEIQLNCVPPILQGRDCIGCAKTGSGKTAAFALPILQKLCDDPYGI-FAVVLTPTRELAFQIADQFKVLGRPIGLKEAVIVGGLDMMKQALSLAN-KPHVVIATPGRLADHIKSTDTLN--LKKIQFLVLDEADRLLDPSFGDDLKVIFDAVPEK-----------------RQTLLFSATLTDTMGELQKMSG---SQPFSYEVQSDIATVAELDQRYLLTPAHVRDCYLVHLLREN-------DDNQSV---------------IVFTHTCKNCQVLVSMFHKLGLTCVGLHSLLSQGERLAALARFKSGTIKILVATDVASRGLDIPQVELVVNSNIPADPKDYIHRVGRTARAGRGGMAISMVTQYDIDRVKKIEEKI 366          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Nematostella
Match: EDO43602 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RYA5])

HSP 1 Score: 224.172 bits (570), Expect = 5.256e-64
Identity = 144/436 (33.03%), Postives = 223/436 (51.15%), Query Frame = 1
Query:   25 FKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWL---------NREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLP-------KKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRL------GLAGQLPVHPDVE 1266
            +KE  I D + ++    G+ +PT IQ+ AIP+ L   DIIG+AETG GKT AF +P+L  W+         N      +ALIL PTRELA QIEE+ +  G   G+++  +IGG     Q  +L      IV+ATPGR++ ++E       +L     +V+DEADRM+ + FE +++ I + LP        + S   +  L        RQT +F+AT    +E++A   L +P  V++ +  +  ++++Q V ++   ++   L  LL   L   I                       I+FV   K    L   L KMG  A  LH   +Q QRE A+   K G  +IL+ATD+A RG+D+  V  V+NYD+ +T + Y HR+GRT RAG++G AV+F+ + +   F  +++ L          +L  HP+ +
Sbjct:  352 WKEAQIPDSILEIVDKLGYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFAIPLLV-WIMGLPKIERDNDADQGPYALILAPTRELAQQIEEEILKFGRPLGIRTVSVIGGLSREDQGFQL-RLGVEIVIATPGRLIDVLENRYL---VLNRCSYIVMDEADRMIDMGFEPEVQKILEHLPVSNVKPDSEDSEDPEHLLTHMGKDKYRQTVMFTATMPPQVERLAKNYLRRPAVVYIGSVGKPVERVEQRVYLVNEQQKRKKLLELLNKDLEPPI-----------------------IIFVNQKKGADVLAKSLEKMGFRATTLHGGRNQEQREFALSSLKGGSKDILVATDVAGRGIDIKDVSHVINYDMAKTIEDYTHRIGRTGRAGKTGIAVSFLTQSDSGVFYDLKQLLLSSPVSSCPSELANHPEAQ 759          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Nematostella
Match: PL10 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SM49])

HSP 1 Score: 196.823 bits (499), Expect = 9.577e-55
Identity = 129/388 (33.25%), Postives = 198/388 (51.03%), Query Frame = 1
Query:   76 GWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILN-------------DWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRD 1200
            G+ +PT +QK AIP+     D++  A+TG GKT AFL+PIL+                 R +     L+L PTRELA QI ++          +  ++ GG ++  Q+ EL + + H++VATPGR+V +M++ +     L++I  LV+DEADRML + FE          P+   I  +  + K     IRQT +FSATF   I+ +A   L     + V       + + Q V+ +   ++   L  LL           G Q +T              +VFV T K    LE++L K G    ++H   SQ +RE A+  F+ G+  IL+AT +A+RGLD+ +V+ V+N+DLP   + Y HR+GRT R G +G A +F N  N++
Sbjct:  211 GYKKPTPVQKYAIPIVKGKRDLMACAQTGSGKTAAFLIPILSRIYMEGPPAPPDIKHAGRRRQYPICLVLAPTRELAVQIFDEARKFSYRSLCRPCVVYGGADIGSQLREL-DRNCHLLVATPGRLVDMMDRGRVG---LDSIRFLVLDEADRMLDMGFE----------PQIRRIVDQDSMPK---TGIRQTLMFSATFPKEIQMLARDFLENYIFLAVGKVGSTSENITQKVVWVDEFDKRSFLLDLLN--------ASGPQQLT--------------LVFVETKKGADALEMFLAKDGYYCTSIHGDRSQREREEALRTFRCGDTPILVATAVAARGLDIPNVKHVINFDLPTDIEEYVHRIGRTGRVGHTGLATSFFNHKNKN 559          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Nematostella
Match: EDO42894 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S034])

HSP 1 Score: 195.667 bits (496), Expect = 1.112e-53
Identity = 146/451 (32.37%), Postives = 220/451 (48.78%), Query Frame = 1
Query:   31 ELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDW-----LNREK-PVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIR---QTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHPDVELSRQDFTRSANAIKEARKEQREEELKLNGF 1356
            + G++  +  V +   + +PT IQ  AIPV ++G D+IG+A+TG GKT AFL+P+         L RE+ P+  A+++TPTRELA QI  +         L+   + GG  +S+Q+ EL    + I+V TPGR++ ++  +       +    LV+DEADRM  + FE  +  I                    I CIR   QT +FSATF   +E +A  +L KP ++ V  +  +   ++Q V+V++  ++                     + +     ++ Q    S +VFV        L   L K     ++LH  + Q  R+  I  FK G   ++IAT +A+RGLDV H+ LVVNYD P   + Y HRVGRT RAG  GTA TF+        I + K L +A + PV  DV          AN   E RK + +  +K +GF
Sbjct:  141 QTGVQLKILDVLKKNSYEKPTPIQAQAIPVIMSGRDMIGIAKTGSGKTLAFLIPMFRHIKDQPPLEREEGPI--AIVMTPTRELAIQIHRECKKFCKPNNLRCVCVYGGTGISEQIAEL-KRGAEIIVCTPGRMIDMLTANNGRVTNCQRCTYLVLDEADRMFDMGFEPQVMRI--------------------IDCIRPDRQTVMFSATFPRQMEALARKILDKPIEIQVGGRSVVCSDVEQNVVVIEEDDKF-------------------LKLLELLGLYQEQ---GSVLVFVEKQDSADSLFKDLLKRSYPCLSLHGGMDQFDRDSTIADFKNGVTKLMIATSVAARGLDVKHLNLVVNYDCPNHYEDYVHRVGRTGRAGNKGTAYTFLTPEQGRFAIDVIKALEMA-ENPVPEDVR-------NLANTYIETRKAEGKNIVKNSGF 538          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Medaka
Match: ddx47 (DEAD-box helicase 47 [Source:NCBI gene;Acc:101159675])

HSP 1 Score: 298.13 bits (762), Expect = 5.114e-94
Identity = 178/452 (39.38%), Postives = 258/452 (57.08%), Query Frame = 1
Query:   22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHPDVELSRQDFT-RSANAIKEAR---KEQREEELKLNGFDMD 1365
             FK+LG+ D LC+ C   GW  PT IQ  AIPVAL G D+IGLAETG GKTGAF LPIL   L   +  +  L+LTPTRELA QI EQF A+GS  G+K  +I+GG +M  Q   L     HIV+ATPGR++  ME +K     L  ++ LV+DEADR+L+++FE++++ I KV+P++                 R+T LFSAT +  ++K+    L  P K  V  K     +L+Q+ + +    +   L ++L                       ++ A +S ++F +TC   + + + L  +G +A+ LH Q+SQN+R  A+++FK+   ++L+ATD+ASRGLD+ HV  V+NYD+P     Y HRVGRTARAGRSG ++TFV + + + F  +E  +G   +LP  P  E        R + A + AR   KEQ E+  +  G D D
Sbjct:   40 TFKDLGVTDVLCEACDQLGWKSPTKIQVEAIPVALQGKDVIGLAETGSGKTGAFALPILQSLLASPQR-LHTLVLTPTRELAFQISEQFEALGSSIGVKCAVIVGGIDMMSQSLVLAK-KPHIVIATPGRLIDHMENTKGFS--LRALKFLVMDEADRILNMDFETEVDKILKVIPRE-----------------RRTFLFSATMTKKVQKLQRAALKDPVKCAVSTKYSTVDKLQQYYVFIPAKYKDCYLVSIL-----------------------NELAGNSFMIFCSTCNNAQRVALMLRNLGITAIPLHGQMSQNKRLGALNKFKSKSRSVLLATDVASRGLDIPHVDCVINYDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIESLIG--KKLPAFPTQEEEVMMLVERVSEAQRFARVEMKEQGEKRKRPRGRDGD 445          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Medaka
Match: ddx49 (DEAD-box helicase 49 [Source:NCBI gene;Acc:101169189])

HSP 1 Score: 234.958 bits (598), Expect = 3.770e-70
Identity = 155/451 (34.37%), Postives = 236/451 (52.33%), Query Frame = 1
Query:   22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLH---LEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHPDVELSRQDFTRSANAIKEARKEQREEELKLNGFDMD 1365
            +F  LG+ D L K C+  G ++PT +Q++ +P  L G D +G A+TG GKT AF+LP+L   L+ +   +F L+LTPTRELA QI EQF  +G   GLK  +++GG +M  Q  EL     H+VVATPGR+   +  S      +  I+ L++DEADR+L     +F  D+E I   LP K                 RQT LFSAT +  ++++    + KP      ++ +  ++L Q  ++    E+V + + +   HL +          T T KH+      S I+F  TCK  + L + L +     ++LHS + Q QR   + +FK     ILIATD+A+RGLD+  V++V+N++ P  P  Y HRVGRTARAGR+G ++T V + +      +E++     +L  +P  E          N  +      RE E++L   D D
Sbjct:    3 DFHSLGLSDWLVKQCKQLGIDKPTPVQENCVPAILEGRDCLGCAKTGSGKTAAFVLPVLQK-LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIVVGGMDMVTQALELSK-QPHVVVATPGRLADHVRSSNTFS--MRKIKFLILDEADRLLEQGCTDFTKDLEEILGTLPAK-----------------RQTLLFSATLTDTLQELKSIAMNKPFFWESTSETRTVEELDQRYILTP--EKVKDAYLV---HLIQ----------TFTDKHDDW----SIIIFTNTCKNCQILTMMLREFNFPTISLHSMMKQRQRFANLAKFKASVYKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQYDIHLVHSIEEQ--TKTKLTEYPVEEKEVHKILTQVNVTR------RECEIRLESTDFD 405          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Medaka
Match: ddx23 (DEAD-box helicase 23 [Source:NCBI gene;Acc:101157453])

HSP 1 Score: 228.409 bits (581), Expect = 5.821e-65
Identity = 146/443 (32.96%), Postives = 227/443 (51.24%), Query Frame = 1
Query:   22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILN--------DWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKK--------------KLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRL------GLAGQLPVHPDVE 1266
            N+KE  +   + +V   CG+ EPT IQ+ AIP+ L   DIIG+AETG GKT AFL+P+L         D +       +A+IL PTRELA QIEE+ I  G   G+++  +IGG     Q  +L      IV+ATPGR++ ++E       +L     +V+DEADRM+ + FE D++ I + +P    +T++K                  G+ K  RQT +F+AT    +E++A   L +   V++ +  +  ++++Q V++M   E+   +  +L       I                       I+FV   K    L   L KMG +A  LH    Q QRE A+   K G  +IL+ATD+A RG+D+  V +V+NYD+ +  + Y HR+GRT RAG+SG A+TF+ + +   F  +++ +          +L  HPD +
Sbjct:  374 NWKEYALPAHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEDSDQGPYAVILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFKL-RMGCEIVIATPGRLIDVLENRYL---VLGRCTYVVLDEADRMIDMGFEPDVQKILEYIP----VTNQKPDTDEAEDPEKMTMNFESGKHK-YRQTVMFTATMPPAVERLARSYLRRAAVVYIGSAGKPHERVEQKVMLMSEGEKRKKMLEVLASGFEPPI-----------------------IIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIHDVSMVINYDMAKNIEDYIHRIGRTGRAGKSGVAMTFLTKEDSAVFYDLKQAILESPVSNCPPELANHPDAQ 784          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Medaka
Match: ddx23 (DEAD-box helicase 23 [Source:NCBI gene;Acc:101157453])

HSP 1 Score: 227.639 bits (579), Expect = 8.487e-65
Identity = 147/443 (33.18%), Postives = 228/443 (51.47%), Query Frame = 1
Query:   22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILN--------DWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKK--------------KLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRL------GLAGQLPVHPDVE 1266
            N+KE  +   + +V   CG+ EPT IQ+ AIP+ L   DIIG+AETG GKT AFL+P+L         D +       +A+IL PTRELA QIEE+ I  G   G+++  +IGG     Q  +L      IV+ATPGR++ ++E       +L     +V+DEADRM+ + FE D++ I + +P    +T++K                  G+ K  RQT +F+AT    +E++A   L +   V++ +  +  ++++Q V++M   E+   +  +L    A    P                     I+FV   K    L   L KMG +A  LH    Q QRE A+   K G  +IL+ATD+A RG+D+  V +V+NYD+ +  + Y HR+GRT RAG+SG A+TF+ + +   F  +++ +          +L  HPD +
Sbjct:  349 NWKEYALPAHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEDSDQGPYAVILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFKL-RMGCEIVIATPGRLIDVLENRYL---VLGRCTYVVLDEADRMIDMGFEPDVQKILEYIP----VTNQKPDTDEAEDPEKMTMNFESGKHK-YRQTVMFTATMPPAVERLARSYLRRAAVVYIGSAGKPHERVEQKVMLMSEGEKRKKMLEVL----ASGFEP-------------------PIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIHDVSMVINYDMAKNIEDYIHRIGRTGRAGKSGVAMTFLTKEDSAVFYDLKQAILESPVSNCPPELANHPDAQ 759          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Medaka
Match: ddx27 (DEAD-box helicase 27 [Source:NCBI gene;Acc:101158015])

HSP 1 Score: 217.624 bits (553), Expect = 2.304e-61
Identity = 149/448 (33.26%), Postives = 222/448 (49.55%), Query Frame = 1
Query:   16 KMNFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILND--WLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINR---DQFIGMEKRLGLAGQLPVHPDVELSRQDFT----RSANAIKEARKEQRE 1332
            +++F ++ +   + K     G+ +PT IQK+ +PV+L G D+   A TG GKT AF+LP+L    +  R   V   L+L PTREL  Q+      +     + + L +GG ++  Q   L      +++ATPGR++  +  +      L  IE L++DEADRML   FE  M+ I ++                     RQT LFSAT +  ++ +A   L +P ++FV++   +   L+Q              F  +R H     R G  +AV       + +     ++F  T KQ   L I L  MG     LH +LSQNQR   + RFK  + +IL+ATD+A+RGLD+D V+ V+N+ +P T   Y HRVGRTARAGRSG +V+ V E  R    + +   K    A  LP  PDV L  +D      +   A+    KE+RE
Sbjct:  172 QLSFDDMNLSRPILKAITALGFKQPTPIQKACVPVSLLGRDLCACAATGTGKTAAFMLPVLERLIYKPRTSQVTRVLVLVPTRELGIQVHSVARQLAQFTSITTCLAVGGLDLKSQEAAL-RAGPDVLIATPGRLIDHLHNTPNFE--LSHIEILILDEADRMLDEYFEEQMKEIIRLCSYN-----------------RQTMLFSATMTEEVKDLAAVSLKQPVRIFVNSNTDVAPFLRQ-------------EFIRIRPH-----REGDREAVVAALLTRTFQ--DHVMLFTQTRKQAHRLHILLGLMGLKVGELHGELSQNQRLENLRRFKDDQIDILVATDVAARGLDIDGVKTVINFTMPSTVKHYVHRVGRTARAGRSGRSVSLVGESERRILKEVVKSAKNSVKARVLP--PDVVLKFRDLICKLEKDVEAVMRLEKEERE 577          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Planmine SMEST
Match: SMESG000030761.1 (SMESG000030761.1)

HSP 1 Score: 976.082 bits (2522), Expect = 0.000e+0
Identity = 471/471 (100.00%), Postives = 471/471 (100.00%), Query Frame = 1
Query:   19 MNFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHPDVELSRQDFTRSANAIKEARKEQREEELKLNGFDMDFSHVNSNFSTKRAKLSAKEKKN 1431
            MNFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHPDVELSRQDFTRSANAIKEARKEQREEELKLNGFDMDFSHVNSNFSTKRAKLSAKEKKN
Sbjct:    1 MNFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHPDVELSRQDFTRSANAIKEARKEQREEELKLNGFDMDFSHVNSNFSTKRAKLSAKEKKN 471          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Planmine SMEST
Match: SMESG000051946.1 (SMESG000051946.1)

HSP 1 Score: 286.574 bits (732), Expect = 3.241e-90
Identity = 159/405 (39.26%), Postives = 241/405 (59.51%), Query Frame = 1
Query:   19 MNFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARD-MLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGG-NQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRL 1227
            M+FKELG+ D LC+  +   W  PT+IQK AIP AL G DIIGLA+TG GKTGAF +PIL + +   KP  FAL+ TPTRELA QI+ +F  +G   G+K   +IGG     Q T++ N   HI++ATPGR +  +  +K   +  L+ ++ LV+DEADRML  +F+ D+  I  +LP+                  R+T LFSAT +  + K+    L  P KV VD K     +LK+F+L+  Y ++  +L  LL+    K  +P   + A       + ++A  S IVFV T   +  L  +L K+G +A  ++S +SQ QR   I + K  + +I++ATD+A+RG+D+ +V +V+ YD+P++   Y HR GRTARAG+ G ++T VN+ N  Q++ +++++
Sbjct:    1 MSFKELGVNDTLCEAIERIKWKIPTEIQKKAIPPALEGKDIIGLAKTGSGKTGAFTIPILQELMKDPKP-FFALVFTPTRELAIQIQTEFNGLGKGIGVKCATLIGGLCEKTQATQILN-KPHIIIATPGRFLKHVATTKGFNEQTLKNLKFLVMDEADRMLSSQFDRDLNKILYILPR-----------------TRRTFLFSATNTDKVSKLQRASLIDPVKVSVDEKYAESSELKEFMLLCPYEQQSAHLVWLLKQLTCKSAKPTEFDIAAFNYLDSDGKKATKSIIVFVQTRMMSNLLAYFLQKLGLNAQPINSDMSQEQRTATIHKMKMRKVDIMVATDVAARGIDIPNVDVVIQYDIPESAKTYTHRAGRTARAGKRGVSITMVNQYNTPQYMEIQEKM 386          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Planmine SMEST
Match: SMESG000068237.1 (SMESG000068237.1)

HSP 1 Score: 224.942 bits (572), Expect = 6.668e-64
Identity = 144/445 (32.36%), Postives = 231/445 (51.91%), Query Frame = 1
Query:   25 FKELGIRDDLCKVC-QGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVM---------FALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKS------SITSKKKLAKG--QIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLG------LAGQLPVHPDVELSRQDFT 1287
            ++E G+ D L  V      + EPT IQ+ AIP+ L   DIIG+AETG GKT AFL+P+L+ W+ +   +          +A+IL PTR+LA QI E+ +  G   G+K+  IIGG    +Q+ +L    + IV+ATPGR+V ++E       +L     +++DE DRM+ + FE+D+  I   LP+ +           +KL +     +  RQT +F+AT    +E++A   L +P  V++ +  +  ++ KQ + ++   ++   L  ++                       S+  +   I+FV   K    L   L KM   A++ H    Q  RE A+   K+ E +IL+AT++A RG+D+  V LV+NYD+P+T D Y HRVGRT RAG+ G A++FV + +   F  +++ L       +  +L  HPD +     FT
Sbjct:  364 WEEAGLSDKLLDVIINKAKYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLS-WIEKLPRLQKMEQNELGPYAIILVPTRDLAIQILEETMKFGQPLGIKAVTIIGGNSREEQVFQL-RLGAEIVIATPGRLVDVLENRYI---VLNQCTYVIMDEVDRMIDMNFEADVRKILSYLPEATEKPDTDDAEDTEKLLQNFHTTQKYRQTVMFTATMQPSVERLARTFLRRPATVYIGSIGKPTERTKQVIYMLTENQKRDKLREIM-----------------------SRNFVPPIIIFVNQKKGADVLAKGLEKMNLKAISFHGGKGQEHREYAMAALKSKEKDILVATNLAGRGIDIKDVSLVLNYDMPKTIDEYIHRVGRTGRAGKEGLAISFVTKDDSPLFYDLKELLKESPLSEIPSELLSHPDAQQKYGTFT 780          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Planmine SMEST
Match: SMESG000018018.1 (SMESG000018018.1)

HSP 1 Score: 215.312 bits (547), Expect = 8.015e-63
Identity = 139/444 (31.31%), Postives = 240/444 (54.05%), Query Frame = 1
Query:   25 FKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLII-GGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDM-LETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVT--ETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQ-LPVH-----------PDVELSRQDFTRSANAIK 1308
            FK++G+ +D+ K+ +     +PT++Q+  IP+ L G D+I  A+TG GKT AFL+PI+ + +   KP  + +ILTPTRELA QI EQ   +     L  T++I GG+++ +Q  +L +   HI++ATPGR+  L+  +++  +  L+  + LV+DEADR+L   F  D++ I   L  K                 R+T LF+AT +  +  V   +    T   + N  ++P   +   +  +   +   +  L ++++  K++   N+A+      K   Q   S  ++F   CK  + L + L       V LHS +++ +RE ++ +FK+    I++ATD+ASRGLD+  V LV+N+++P  P  Y HRVGRTAR+GR+GT++T  N   ++    +++ +G   +  P+             ++ L+R+D  R  +AIK
Sbjct:    2 FKKIGVTEDVIKLLENKKIIKPTEVQEHCIPLVLQGKDVIACAKTGSGKTAAFLIPIIQNLIVDIKP-YYCVILTPTRELAHQIGEQAKGLLVSQNLAKTIVITGGKDLIKQGADLTS-SYHILIATPGRLAHLIRDNEEREEWSLKRCKYLVLDEADRLLEDNFGEDLKVIFDSLSTK-----------------RKTLLFTATLTGPVLDVVKII----TDTAIANNREVPVIWRASGMTDE--SKATTVDTLKQYYILSKMQ--NNEAIMFYIVDKFLQQNPSSLIMIFTNKCKWCQMLHMMLKAFKFKTVMLHSVMTEKEREESLMKFKSSTVRIMVATDLASRGLDIPRVDLVINHNVPINPKSYVHRVGRTARSGRAGTSITMANLFEKESLKKIQQYIGCEMEKYPIETTDLQKIEKTWAEIALARRDAERKLDAIK 418          
BLAST of ATP-dependent rRNA helicase RRP3 vs. Planmine SMEST
Match: SMESG000013025.1 (SMESG000013025.1)

HSP 1 Score: 201.83 bits (512), Expect = 1.496e-55
Identity = 139/418 (33.25%), Postives = 214/418 (51.20%), Query Frame = 1
Query:   22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNRE-KPVMF-------ALILTPTRELAAQI--EEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQL 1245
            NF EL +   +        +  PT IQK+AIP  L   DI+  A+TG GKT AFL+PI+N  ++++  P  +        LIL PTRELA QI  E Q  ++ ++  ++S ++ GG +   Q+ E+     H++VATPGR+V  +EK+K +   LE  + +V+DEADRML + FE          P+   I  +  +  G     RQT +FSATF   I+K+A   L+    + V         +KQ ++ M  VE++  L                 + +  TT   +       ++FV T K    L  +L   G    ++H   +Q +RE A++ F+ G+  IL+AT +A+RGLD+ +V+ V+NYDLP   + Y HR+GRT R G  G A +F  + N +  I +   L  A Q+
Sbjct:  186 NFDELKLNPIIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLISQDLSPQRYTKTAYPKCLILAPTRELAIQILSESQKFSLNTQ--MRSCVVYGGADTHSQIREV-QIGCHLLVATPGRLVDFIEKNKIS---LEMCKYIVLDEADRMLDMGFE----------PQIRKIIEESNMPSG---INRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQEIIYMTDVEKLNYL-----------------KNIFNTTAPNTL-----ILIFVETKKGADSLARFLLSKGYPVSSIHGDRNQGEREHALNMFRNGQCPILVATAVAARGLDIPNVKHVINYDLPSDIEEYVHRIGRTGRLGNHGRATSFYVDKNNNIAIDLVDLLKEANQI 562          
The following BLAST results are available for this feature:
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
DDX472.950e-9540.77DEAD-box helicase 47 [Source:HGNC Symbol;Acc:HGNC:... [more]
DDX497.239e-7138.07DEAD-box helicase 49 [Source:HGNC Symbol;Acc:HGNC:... [more]
DDX237.778e-6633.94DEAD-box helicase 23 [Source:HGNC Symbol;Acc:HGNC:... [more]
DDX472.391e-6235.91DEAD-box helicase 47 [Source:HGNC Symbol;Acc:HGNC:... [more]
DDX271.968e-6033.90DEAD-box helicase 27 [Source:HGNC Symbol;Acc:HGNC:... [more]
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BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5
Match NameE-valueIdentityDescription
T26G10.14.767e-9240.20Putative ATP-dependent RNA helicase T26G10.1 [Sou... [more]
ddx-231.856e-6433.41DEAD boX helicase homolog [Source:UniProtKB/TrEMB... [more]
H20J04.45.988e-6434.41pep chromosome:WBcel235:II:4329023:4332507:1 gene:... [more]
H20J04.41.129e-6332.62pep chromosome:WBcel235:II:4329023:4334091:1 gene:... [more]
H20J04.41.129e-6332.62pep chromosome:WBcel235:II:4329023:4334484:1 gene:... [more]
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BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5
Match NameE-valueIdentityDescription
CG92531.649e-9342.12gene:FBgn0032919 transcript:FBtr0081468[more]
CG103337.397e-6433.33gene:FBgn0032690 transcript:FBtr0081072[more]
Rs15.800e-6036.50gene:FBgn0021995 transcript:FBtr0345935[more]
Rs15.800e-6036.50gene:FBgn0021995 transcript:FBtr0088788[more]
bel6.199e-5835.31gene:FBgn0263231 transcript:FBtr0081888[more]
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BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ddx492.137e-6837.03DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Source:... [more]
ddx232.439e-6633.41DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Source:... [more]
ddx233.736e-6633.18DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Source:... [more]
ddx279.223e-5933.42DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Source:... [more]
ddx466.410e-5433.16DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Source:... [more]
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BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
mki672.965e-9841.27marker of proliferation Ki-67 [Source:Xenbase;Acc:... [more]
mki673.641e-9641.10marker of proliferation Ki-67 [Source:Xenbase;Acc:... [more]
mki674.105e-9640.72marker of proliferation Ki-67 [Source:Xenbase;Acc:... [more]
mki671.346e-9540.96marker of proliferation Ki-67 [Source:Xenbase;Acc:... [more]
mki671.903e-9540.96marker of proliferation Ki-67 [Source:Xenbase;Acc:... [more]
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BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Ddx476.122e-9641.00DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Source:... [more]
Ddx477.103e-8739.71DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Source:... [more]
Ddx498.638e-7137.31DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Source:... [more]
Ddx235.828e-6633.94DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Source:... [more]
Ddx473.043e-6336.08DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Source:... [more]
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BLAST of ATP-dependent rRNA helicase RRP3 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q29S22|DDX47_BOVIN2.750e-9541.00Probable ATP-dependent RNA helicase DDX47 OS=Bos t... [more]
sp|Q9CWX9|DDX47_MOUSE4.282e-9541.00Probable ATP-dependent RNA helicase DDX47 OS=Mus m... [more]
sp|Q9H0S4|DDX47_HUMAN1.417e-9440.77Probable ATP-dependent RNA helicase DDX47 OS=Homo ... [more]
sp|Q4IFI0|RRP3_GIBZE3.036e-9141.38ATP-dependent rRNA helicase RRP3 OS=Gibberella zea... [more]
sp|P34580|DDX47_CAEEL6.063e-9140.20Putative ATP-dependent RNA helicase T26G10.1 OS=Ca... [more]
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BLAST of ATP-dependent rRNA helicase RRP3 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0L0C5W82.701e-9643.20Uncharacterized protein OS=Lucilia cuprina OX=7375... [more]
A0A1I8PJ103.864e-9642.62Uncharacterized protein OS=Stomoxys calcitrans OX=... [more]
A0A1I8N8U92.054e-9543.00Uncharacterized protein OS=Musca domestica OX=7370... [more]
W8BQX62.062e-9543.61Putative ATP-dependent RNA helicase DDX47 OS=Cerat... [more]
A0A5G3IX804.656e-9541.27Marker of proliferation Ki-67 OS=Xenopus tropicali... [more]
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BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ddx471.534e-9238.72DEAD-box helicase 47 [Source:NCBI gene;Acc:1030345... [more]
ddx491.382e-7034.64DEAD-box helicase 49 [Source:NCBI gene;Acc:1030432... [more]
ddx231.403e-6433.18DEAD-box helicase 23 [Source:NCBI gene;Acc:1030374... [more]
ddx272.486e-5933.67DEAD-box helicase 27 [Source:NCBI gene;Acc:1030322... [more]
ddx274.296e-5933.67DEAD-box helicase 27 [Source:NCBI gene;Acc:1030322... [more]
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BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSPMAT00000000216.13.958e-9739.82pep scaffold:Pmarinus_7.0:GL476721:117971:126978:-... [more]
ddx492.580e-6837.50DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Source:... [more]
ddx231.446e-6433.96DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Source:... [more]
ddx271.767e-5734.43DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Source:... [more]
DDX543.834e-5533.08DEAD-box helicase 54 [Source:HGNC Symbol;Acc:HGNC:... [more]
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BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 5
Match NameE-valueIdentityDescription
RRP39.698e-8238.37Protein involved in rRNA processing; required for ... [more]
DBP81.969e-6835.44ATPase, putative RNA helicase of the DEAD-box fami... [more]
DRS14.197e-6335.87Nucleolar DEAD-box protein required for ribosome a... [more]
DBP36.075e-5934.34RNA-Dependent ATPase, member of DExD/H-box family;... [more]
DBP24.378e-5732.16ATP-dependent RNA helicase of the DEAD-box protein... [more]
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BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5
Match NameE-valueIdentityDescription
EDO335936.395e-9641.18Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO430115.576e-7438.27Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO436025.256e-6433.03Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
PL109.577e-5533.25Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO428941.112e-5332.37Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ddx475.114e-9439.38DEAD-box helicase 47 [Source:NCBI gene;Acc:1011596... [more]
ddx493.770e-7034.37DEAD-box helicase 49 [Source:NCBI gene;Acc:1011691... [more]
ddx235.821e-6532.96DEAD-box helicase 23 [Source:NCBI gene;Acc:1011574... [more]
ddx238.487e-6533.18DEAD-box helicase 23 [Source:NCBI gene;Acc:1011574... [more]
ddx272.304e-6133.26DEAD-box helicase 27 [Source:NCBI gene;Acc:1011580... [more]
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BLAST of ATP-dependent rRNA helicase RRP3 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000030761.10.000e+0100.00SMESG000030761.1[more]
SMESG000051946.13.241e-9039.26SMESG000051946.1[more]
SMESG000068237.16.668e-6432.36SMESG000068237.1[more]
SMESG000018018.18.015e-6331.31SMESG000018018.1[more]
SMESG000013025.11.496e-5533.25SMESG000013025.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30008605 ID=SMED30008605|Name=ATP-dependent rRNA helicase RRP3|organism=Schmidtea mediterranea sexual|type=transcript|length=1809bp
ATACCATAAAATTTTAAAATGAACTTTAAAGAATTGGGTATTAGAGATGA
CTTATGTAAGGTTTGCCAAGGATGTGGTTGGAACGAACCTACAGATATTC
AAAAATCAGCAATCCCAGTTGCTCTTACAGGAGTTGATATAATAGGCCTA
GCTGAAACTGGAGGAGGAAAAACCGGTGCATTTTTATTACCTATTTTGAA
TGATTGGTTAAATAGAGAAAAGCCAGTAATGTTTGCATTAATTCTAACTC
CAACTCGTGAATTGGCAGCGCAAATTGAAGAGCAATTCATTGCTATGGGC
AGCGAATTTGGTTTAAAATCAACTCTAATCATTGGTGGTGAAGAAATGAG
TCAACAAATGACCGAATTAGGCAATTGGGATTCACATATTGTCGTTGCAA
CTCCCGGCCGAGTAGTGTCATTGATGGAAAAATCAAAGCAAGCCCGTGAT
ATGCTGGAAACCATAGAAAAACTGGTAATCGACGAAGCCGACCGAATGCT
CCATTTGGAATTTGAATCCGACATGGAAGCAATATCAAAAGTACTGCCGA
AGAAAAGCAGCATTACCAGCAAAAAGAAACTGGCAAAGGGCCAAATAAAA
TGCATCCGACAAACCCAACTGTTTTCCGCTACTTTCAGCTCTCACATCGA
AAAAGTCGCCGGCTATTTGCTATGGAAACCGACAAAAGTTTTCGTCGACA
ACAAAATGCAAATCCCAAAGCAATTGAAGCAATTCGTTCTCGTCATGCAG
TATGTCGAGCGAGTTCCGAATCTGTTTGCGTTGCTGCGTTTTCACCTGGC
AAAGAAAATCCGACCTGGCGGTAACCAGGCAGTAACCGAAACCACCAAAC
ACGAGTCACAAAGAGCCCTGTCGAGCGCGATCGTATTCGTGACGACCTGC
AAGCAAACAAAGCCATTGGAAATCTACCTCAACAAAATGGGAGCATCAGC
GGTTGCGCTCCACTCGCAACTGTCCCAGAACCAGCGAGAACTCGCGATAG
ATAGGTTCAAAACCGGTGAGGCCAACATTCTGATCGCGACAGATATCGCC
AGCAGAGGATTGGATGTCGATCACGTACGGCTCGTTGTCAATTACGATCT
ACCCCAGACTCCCGATTGGTATAAGCATCGGGTCGGGAGGACCGCTCGTG
CCGGTAGGAGCGGAACCGCGGTCACGTTTGTCAATGAGATCAATCGGGAT
CAATTTATCGGGATGGAGAAGCGACTGGGGCTAGCGGGTCAGTTGCCTGT
TCATCCCGATGTCGAGCTGAGTCGGCAGGACTTCACGCGCTCCGCAAACG
CCATCAAGGAAGCCCGAAAGGAACAGCGAGAGGAGGAATTGAAACTCAAC
GGGTTCGATATGGATTTCTCACACGTCAACAGTAATTTCAGTACGAAACG
CGCTAAATTGTCAGCGAAAGAGAAAAAAAACTAAATAATAAATTCTTCGT
TTTTCTTGATTTGCTCAACGATTGGTCAACTGGTTGTACTTGACAACCAA
TCAGCAAATTGTTTCAATTTTATTCAATAACATTTTATATAACTTGTATG
TATATTGCGGGAATTCAATGCGTACTACATGCGATAAACAAACGTTCTGT
CACATCGGAACGACCTGCCGAAATTAGCTTGTGGAACACTTTAATATTGC
AATTAAAAAGTCTCTGCCATTTCGAATGCATAAAGTTGTAAATCATAAAT
TAGTGTAACAAAATGCATGAGTTGATAGAATATTGCAGGTGTTATCGCAT
GAAGTAACCATATTGAAATGAAATAATTATTATACCTTTATTATGAAATT
AAGTGAATG
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protein sequence of SMED30008605-orf-1

>SMED30008605-orf-1 ID=SMED30008605-orf-1|Name=SMED30008605-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=472bp
MNFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGG
KTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLK
STLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIE
KLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQ
LFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVP
NLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPL
EIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDV
DHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGME
KRLGLAGQLPVHPDVELSRQDFTRSANAIKEARKEQREEELKLNGFDMDF
SHVNSNFSTKRAKLSAKEKKN*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: molecular function
TermDefinition
GO:0003724RNA helicase activity
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO:0003723RNA binding
GO:0004004ATP-dependent RNA helicase activity
GO:0004386helicase activity
GO:0008186RNA-dependent ATPase activity
GO:0016787hydrolase activity
GO:0000166nucleotide binding
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002109X1 cell
PLANA:0002111X2 cell
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR014001Helicase_ATP-bd
IPR010678Digest_organ_expansion_fac-prd
IPR027417P-loop_NTPase
IPR011545DEAD/DEAH_box_helicase_dom
IPR000629RNA-helicase_DEAD-box_CS
IPR014014RNA_helicase_DEAD_Q_motif
Vocabulary: cellular component
TermDefinition
GO:0005634nucleus
GO:0005829cytosol
Vocabulary: biological process
TermDefinition
GO:0000462maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0006364rRNA processing
GO:0042254ribosome biogenesis
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 394..401
NoneNo IPR availableGENE3DG3DSA:3.40.50.300coord: 1..162
e-value: 7.6E-38
score: 131.6
NoneNo IPR availableGENE3DG3DSA:3.40.50.300coord: 164..401
e-value: 7.6E-46
score: 158.6
NoneNo IPR availablePANTHERPTHR24031RNA HELICASEcoord: 2..320
NoneNo IPR availablePANTHERPTHR24031:SF676ATP-DEPENDENT RNA HELICASE DDX49-RELATEDcoord: 2..320
NoneNo IPR availableCDDcd17954DEADc_DDX47coord: 1..154
e-value: 2.73422E-40
score: 140.144
NoneNo IPR availableCDDcd18787SF2_C_DEADcoord: 172..318
e-value: 1.21549E-50
score: 164.603
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 228..309
e-value: 1.1E-31
score: 121.3
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 215..309
e-value: 1.0E-28
score: 99.9
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 197..353
score: 20.961
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 2..169
e-value: 0.0097
score: 15.4
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 1..154
score: 18.739
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 3..142
e-value: 1.1E-24
score: 87.1
IPR010678Digestive organ expansion factor, predictedPFAMPF06862UTP25coord: 51..303
e-value: 1.7E-8
score: 33.7
IPR000629ATP-dependent RNA helicase DEAD-box, conserved sitePROSITEPS00039DEAD_ATP_HELICASEcoord: 83..91
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILYSSF52540P-loop containing nucleoside triphosphate hydrolasescoord: 2..330