ATP-dependent rRNA helicase RRP3
|
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30008605 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 2
Homology
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Human
Match: DDX47 (DEAD-box helicase 47 [Source:HGNC Symbol;Acc:HGNC:18682]) HSP 1 Score: 300.827 bits (769), Expect = 2.950e-95 Identity = 179/439 (40.77%), Postives = 259/439 (59.00%), Query Frame = 1
Query: 22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPV-MFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHPDVELSRQDFT-RSANAIKEARKEQRE 1332
FK+LG+ D LC+ C GW +PT IQ AIP+AL G DIIGLAETG GKTGAF LPILN L E P +FAL+LTPTRELA QI EQF A+GS G++S +I+GG + Q L HI++ATPGR++ +E +K L ++ LV+DEADR+L+++FE++++ I KV+P+ R+T LFSAT + ++K+ L P K V +K Q ++L+Q+ + + + L +L ++ A +S ++F +TC T+ + L +G +A+ LH Q+SQ++R ++++FK +IL+ATD+ASRGLD+ HV +VVN+D+P Y HRVGRTARAGRSG A+TFV + + + F +E +G +LP P + T R A A + AR E RE
Sbjct: 25 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL--ETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK-KPHIIIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD-----------------RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYIL-----------------------NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG--KKLPGFPTQDDEVMMLTERVAEAQRFARMELRE 416
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Human
Match: DDX49 (DEAD-box helicase 49 [Source:HGNC Symbol;Acc:HGNC:18684]) HSP 1 Score: 238.039 bits (606), Expect = 7.239e-71 Identity = 150/394 (38.07%), Postives = 213/394 (54.06%), Query Frame = 1
Query: 22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLH---LEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEIN 1194
F ELG+ L + C+ G +PT +Q IP L G D +G A+TG GKT AF+LPIL L+ + +F L+LTPTRELA QI EQF +G GLK +I+GG +M Q EL H+V+ATPGR+ + S ++ I LV+DEADR+L +F D+EAI +P + RQT LFSAT + + ++ G +P + +QL Q L++ E+V + + + HL ++ + +HE S I+F TCK + L + L K VALHS + Q +R A+ +FK+ ILIATD+ASRGLD+ V++V+N++ P P Y HRVGRTARAGR G A+T V + +
Sbjct: 3 GFAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK-LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSR-KPHVVIATPGRLADHLRSSNTFS--IKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPAR-----------------RQTLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVP--EKVKDAYLV---HLIQRFQ----------DEHEDW----SIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYD 356
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Human
Match: DDX23 (DEAD-box helicase 23 [Source:HGNC Symbol;Acc:HGNC:17347]) HSP 1 Score: 231.876 bits (590), Expect = 7.778e-66 Identity = 149/439 (33.94%), Postives = 227/439 (51.71%), Query Frame = 1
Query: 22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILN--------DWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLP-------KKSSITSKKKLAK---GQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRL------GLAGQLPVHPDVE 1266
++K+ + + +V CG+ EPT IQ+ AIP+ L DIIG+AETG GKT AFL+P+L D + +A+IL PTRELA QIEE+ I G G+++ +IGG Q L IV+ATPGR++ ++E +L +V+DEADRM+ + FE D++ I + +P + +K LA G+ K RQT +F+AT +E++A L +P V++ + + ++++Q V +M E+ L A+L I I+FV K L L KMG +A LH Q QRE A+ K G +IL+ATD+A RG+D+ V +VVNYD+ + + Y HR+GRT RAG+SG A+TF+ + + F +++ + +L HPD +
Sbjct: 392 SWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRL-RMGCEIVIATPGRLIDVLENRYL---VLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHK-YRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPI-----------------------IIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAILESPVSSCPPELANHPDAQ 802
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Human
Match: DDX47 (DEAD-box helicase 47 [Source:HGNC Symbol;Acc:HGNC:18682]) HSP 1 Score: 213.001 bits (541), Expect = 2.391e-62 Identity = 158/440 (35.91%), Postives = 222/440 (50.45%), Query Frame = 1
Query: 22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPV-MFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGG-EEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHPDVELSRQDFT-RSANAIKEARKEQRE 1332
FK+LG+ D LC+ C GW +PT IQ AIP+AL G DIIGLAETG GKTGAF LPILN L E P +FAL+LTPTRELA QI EQF A+GS G++S +I+GG + MSQ + HI++ATPGR++ +E +K L ++ LV+DEADR+L+++FE++++ I KV+P+ R+T LFSAT + ++K+ L P K V +K Q ++L+Q+ + +P+ F +S+R S LNK A A ++ R L I ++++ DI + D H RVGRTARAGRSG A+TFV + + + F +E +G +LP P + T R A A + AR E RE
Sbjct: 25 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL--ETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKK--PHIIIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD-----------------RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIF------IPSKF-------------------------KSKRLGS------------------LNKFKAKARSILLATDVASRGLDIP-----HVDVVVNFDIPTHSKDYIH------------------RVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG--KKLPGFPTQDDEVMMLTERVAEAQRFARMELRE 367
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Human
Match: DDX27 (DEAD-box helicase 27 [Source:HGNC Symbol;Acc:HGNC:15837]) HSP 1 Score: 216.083 bits (549), Expect = 1.968e-60 Identity = 140/413 (33.90%), Postives = 208/413 (50.36%), Query Frame = 1
Query: 19 MNFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILND--WLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPV 1251
++F+++ + L K G+ +PT IQK+ IPV L G DI A TG GKT AF LP+L + R+ PV L+L PTREL Q+ + + + L +GG ++ Q L I++ATPGR++ + L +IE L++DEADRML FE M+ I ++ RQT LFSAT + ++ +A L P ++FV++ + L+Q +++ PN R G +A+ ++ ++F T KQ + I L MG LH LSQ QR A+ RFK + +IL+ATD+A+RGLD++ V+ V+N+ +P T Y HRVGRTARAGR+G +V+ V E R M K + A + PV
Sbjct: 187 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAAL-RAAPDILIATPGRLIDHLHNCPSFH--LSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHH-----------------RQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQ-----EFIRIRPN-------------REGDREAIVAALL--TRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERK----MLKEIVKAAKAPV 555
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Celegans
Match: T26G10.1 (Putative ATP-dependent RNA helicase T26G10.1 [Source:UniProtKB/Swiss-Prot;Acc:P34580]) HSP 1 Score: 292.738 bits (748), Expect = 4.767e-92 Identity = 162/403 (40.20%), Postives = 236/403 (58.56%), Query Frame = 1
Query: 22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLG 1230
+F ELG+ LC CQ GW +P+ IQ++A+P AL G D+IGLAETG GKTGAF +P+L L+ + F L+LTPTRELA QI +QF A+GS GL + +I+GG +M+ Q L HI+VATPGR+V +E +K L+ ++ L++DEADR+L+++FE +++ I KV+P++ R+T LFSAT + + K+ L P +V V ++ + LKQ + + + L LL H GN SAIVF TC T + + L ++G AV LH Q+SQ +R ++++FK+ IL+ TD+A+RGLD+ HV +V+NYD+P Y HRVGRTARAGRSG A+T V + + + + +E LG
Sbjct: 45 SFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLDHPQ-AFFCLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALARR-PHIIVATPGRLVDHLENTKGFN--LKALKFLIMDEADRILNMDFEVELDKILKVIPRE-----------------RRTYLFSATMTKKVSKLERASLRDPARVSVSSRYKTVDNLKQHYIFVPNKYKETYLVYLLNEH-------AGN----------------SAIVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDVEAYQKIEANLG 403
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Celegans
Match: ddx-23 (DEAD boX helicase homolog [Source:UniProtKB/TrEMBL;Acc:Q95QN2]) HSP 1 Score: 225.328 bits (573), Expect = 1.856e-64 Identity = 149/446 (33.41%), Postives = 232/446 (52.02%), Query Frame = 1
Query: 22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVM----------FALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLP----KKSS--ITSKKKLAKG--QIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRL------GLAGQLPVHPDVELSRQDFT 1287
N++E G D++ + + G+ EPT IQ+ AIP+ L D+IG+AETG GKT AFLLP+L W+ P M +A+I+ PTRELA QIEE+ G G+K+ +IGG Q +L +V+ATPGR++ ++E +L +++DEADRML + FE D++ + + +P KK + +++ L KG + RQT +F+AT SS IE++A L +P V + + + ++++Q V ++ + L +L I I+FV K L L K+G LH Q+QRE A+ K G ++IL+ATD+A RG+DV V LV+NYD+ ++ + Y HR+GRT RAG+ G A+TF+ + + +++ L +L HPD + FT
Sbjct: 302 NWEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLV-WIT-SLPKMERQEHRDLGPYAIIMAPTRELAQQIEEETNKFGKLLGIKTVSVIGGASREDQGMKL-RMGVEVVIATPGRLLDVLENRYL---LLNQCTYVILDEADRMLDMGFEPDVQKVLEYMPDTNMKKDTDEFDNEEALMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPAVVHIGSAGKPTERVEQVVYMVPEDRKRKKLVEVLESQFQPPI-----------------------IIFVNQKKGADMLSKGLTKLGFKPTVLHGGKGQDQREYALQALKEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGRTGRAGKHGKAITFLTPDDTAVYFDLKQVLVESPVSSCPPELANHPDAQSKPGVFT 718
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Celegans
Match: H20J04.4 (pep chromosome:WBcel235:II:4329023:4332507:1 gene:WBGene00019219.1 transcript:H20J04.4a.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:H20J04.4) HSP 1 Score: 218.394 bits (555), Expect = 5.988e-64 Identity = 139/404 (34.41%), Postives = 216/404 (53.47%), Query Frame = 1
Query: 25 FKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQA-RDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQR-ALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLG 1230
F +LG+ + + Q T +Q + IP L G DI+G A TG GKT AF +PIL L+ + ++ALILTPTRELA QI EQF A+G LK ++I+GG + Q EL H+VVATPGR+ L+E + + I+ V+DEADRML ++ ++ I + + +K RQT L SAT +++I + KP F ++K + + V+R+ + + + + + K+ S++ SS ++F TC++ + L +G +LHSQ+ Q QR A+ F++ ++I TD+ASRGLD+ HV LVVN+++PQ P Y HRVGR+ARAGR G+A++FV + + + +E+ +G
Sbjct: 91 FSQLGVCSWITQQLQTMQIKTATPVQAACIPKILEGSDILGCARTGTGKTLAFAIPILQK-LSVDPYGIYALILTPTRELAFQIAEQFTALGKPITLKCSVIVGGRSLIHQARELSE-RPHVVVATPGRLADLIESDPDTIAKVFKKIQFFVLDEADRMLEGQYNDQLKPIFESISEK-----------------RQTLLLSATITNNINMLHRVSTRKP--YFFEDKGKDDEST---------VDRLEQKYVVCPVAVK-------DAYLVYVVKNYSEKNPKSSVMIFAQTCRECQALAYMFEGLGFRVGSLHSQIPQKQRLAALSAFRSKTLQVIICTDVASRGLDIPHVDLVVNHNVPQCPKTYIHRVGRSARAGRFGSALSFVTQYDVELLQAVEQVIG 457
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Celegans
Match: H20J04.4 (pep chromosome:WBcel235:II:4329023:4334091:1 gene:WBGene00019219.1 transcript:H20J04.4b.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:H20J04.4) HSP 1 Score: 219.55 bits (558), Expect = 1.129e-63 Identity = 153/469 (32.62%), Postives = 236/469 (50.32%), Query Frame = 1
Query: 25 FKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQA-RDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQ----IPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLA-GQLPVHPDVELSRQDFTRSANAIKEARKE----------------QREEELKLNGFDMD 1365
F +LG+ + + Q T +Q + IP L G DI+G A TG GKT AF +PIL L+ + ++ALILTPTRELA QI EQF A+G LK ++I+GG + Q EL H+VVATPGR+ L+E + + I+ V+DEADRML ++ ++ I + + +K RQT L SAT +++I + KP F ++K + +L+Q +V + L +++ + K + SS ++F TC++ + L +G +LHSQ+ Q QR A+ F++ ++I TD+ASRGLD+ HV LVVN+++PQ P Y HRVGR+ARAGR G+A++FV + + + +E+ +G +L V P + T+ + A+KE R +EL ++G D D
Sbjct: 91 FSQLGVCSWITQQLQTMQIKTATPVQAACIPKILEGSDILGCARTGTGKTLAFAIPILQK-LSVDPYGIYALILTPTRELAFQIAEQFTALGKPITLKCSVIVGGRSLIHQARELSER-PHVVVATPGRLADLIESDPDTIAKVFKKIQFFVLDEADRMLEGQYNDQLKPIFESISEK-----------------RQTLLLSATITNNINMLHRVSTRKP--YFFEDKGKDDESTVDRLEQKYVVCPVAVKDAYLVYVVKNYSEKNPK-------------------SSVMIFAQTCRECQALAYMFEGLGFRVGSLHSQIPQKQRLAALSAFRSKTLQVIICTDVASRGLDIPHVDLVVNHNVPQCPKTYIHRVGRSARAGRFGSALSFVTQYDVELLQAVEQVIGKKLDELKVSP------KHVTKYVTQVLVAKKEAELKLENQKFGEKKEINRRKELLMSGMDED 513
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Celegans
Match: H20J04.4 (pep chromosome:WBcel235:II:4329023:4334484:1 gene:WBGene00019219.1 transcript:H20J04.4b.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:H20J04.4) HSP 1 Score: 219.55 bits (558), Expect = 1.129e-63 Identity = 153/469 (32.62%), Postives = 236/469 (50.32%), Query Frame = 1
Query: 25 FKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQA-RDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQ----IPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLA-GQLPVHPDVELSRQDFTRSANAIKEARKE----------------QREEELKLNGFDMD 1365
F +LG+ + + Q T +Q + IP L G DI+G A TG GKT AF +PIL L+ + ++ALILTPTRELA QI EQF A+G LK ++I+GG + Q EL H+VVATPGR+ L+E + + I+ V+DEADRML ++ ++ I + + +K RQT L SAT +++I + KP F ++K + +L+Q +V + L +++ + K + SS ++F TC++ + L +G +LHSQ+ Q QR A+ F++ ++I TD+ASRGLD+ HV LVVN+++PQ P Y HRVGR+ARAGR G+A++FV + + + +E+ +G +L V P + T+ + A+KE R +EL ++G D D
Sbjct: 91 FSQLGVCSWITQQLQTMQIKTATPVQAACIPKILEGSDILGCARTGTGKTLAFAIPILQK-LSVDPYGIYALILTPTRELAFQIAEQFTALGKPITLKCSVIVGGRSLIHQARELSER-PHVVVATPGRLADLIESDPDTIAKVFKKIQFFVLDEADRMLEGQYNDQLKPIFESISEK-----------------RQTLLLSATITNNINMLHRVSTRKP--YFFEDKGKDDESTVDRLEQKYVVCPVAVKDAYLVYVVKNYSEKNPK-------------------SSVMIFAQTCRECQALAYMFEGLGFRVGSLHSQIPQKQRLAALSAFRSKTLQVIICTDVASRGLDIPHVDLVVNHNVPQCPKTYIHRVGRSARAGRFGSALSFVTQYDVELLQAVEQVIGKKLDELKVSP------KHVTKYVTQVLVAKKEAELKLENQKFGEKKEINRRKELLMSGMDED 513
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Fly
Match: CG9253 (gene:FBgn0032919 transcript:FBtr0081468) HSP 1 Score: 297.36 bits (760), Expect = 1.649e-93 Identity = 171/406 (42.12%), Postives = 244/406 (60.10%), Query Frame = 1
Query: 16 KMNFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPV-MFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLG 1230
K+ +K+LG+ + LC+ C W P+ IQ+ AIPVAL G D+IGLAETG GKTGAF LPIL+ L E P FAL+LTPTRELA QI EQF A+GS G+K +++GG +M Q +L HI++ATPGR+V +E K L+ I+ LV+DEADR+L+++FE +++ I KVLP++ R+T LFSAT + ++K+ L P KV V NK Q +QL+Q L + + L +L ++ A +S ++F +TC T + L +G +A+ LH Q+SQN+R A+++FK +ILI+TD+ASRGLD+ HV +VVN+D+P Y HRVGRTARAGRSG A+T V++ + + + +E LG
Sbjct: 60 KLTWKDLGLNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALL--ENPQRYFALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAK-KPHIIIATPGRLVDHLENMKGFN--LKAIKYLVMDEADRILNMDFEVELDKILKVLPRE-----------------RRTFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHIL-----------------------NELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRIEHLLG 420
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Fly
Match: CG10333 (gene:FBgn0032690 transcript:FBtr0081072) HSP 1 Score: 225.713 bits (574), Expect = 7.397e-64 Identity = 135/405 (33.33%), Postives = 220/405 (54.32%), Query Frame = 1
Query: 22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVM---------FALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCI---------RQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFV 1182
++ E G ++ + G+ EPT IQ+ AIP+ L DIIG+AETG GKT AFL+P+L+ W+ + +A+I+ PTRELA QIEE+ G G+++ +++GG +Q L IV+ATPGR++ ++E +L +V+DEADRM+ + FE D++ I + +P +++ + A+ + K + RQT +F+AT +E++A L +P V++ + + ++ +Q V +M ++ L +L ++KI P I+FV K L L K+G ++ LH Q QRE A+ K+G +IL+ATD+A RG+D+ V LV+NYD+ +T + Y HR+GRT RAG++G A++FV
Sbjct: 395 SWNESGFPKEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLS-WIQSLPKIERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQGFRL-RLGCEIVIATPGRLIDVLENRYL---VLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV-TNLKPDTEEAEDETKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPTERTEQIVYMMGENDKRKKLMEIL----SRKIDP-------------------PVIIFVNQKKGADVLAKGLEKLGYNSCTLHGGKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTGRAGKTGCAISFV 770
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Fly
Match: Rs1 (gene:FBgn0021995 transcript:FBtr0345935) HSP 1 Score: 214.157 bits (544), Expect = 5.800e-60 Identity = 146/400 (36.50%), Postives = 205/400 (51.25%), Query Frame = 1
Query: 22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNR---EKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQ-FVLVMQYVE--RVPNLFALL--RFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINR 1197
+F ++ + L + G+ PT IQ S IPVAL G DI G A TG GKT A++LP L L R K + L+L PTREL AQ+ + + + L IGG ++ Q L + IV+ATPGR++ ++ + L++IE L++DEADRML F M+ I K RQT LFSAT S ++ +A L KP KVFV+N Q+ L+Q F+ + + E R P L +L+ FH +VFV T KQ L I L +G A LH L+Q QR ++ +FK + ++LIATD+A+RGLD+ V+ V+N+ +P T + Y HRVGRTARAGR+G +V+ E R
Sbjct: 158 SFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLERLLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTTIDVGLAIGGLDVKAQEAVL-RQNPDIVIATPGRLIDHIKNTPSF--TLDSIEVLILDEADRMLDEYFAEQMKEIINSCCK-----------------TRQTMLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLICRTFH-------------------------DHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLIATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKER 512
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Fly
Match: Rs1 (gene:FBgn0021995 transcript:FBtr0088788) HSP 1 Score: 214.157 bits (544), Expect = 5.800e-60 Identity = 146/400 (36.50%), Postives = 205/400 (51.25%), Query Frame = 1
Query: 22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNR---EKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQ-FVLVMQYVE--RVPNLFALL--RFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINR 1197
+F ++ + L + G+ PT IQ S IPVAL G DI G A TG GKT A++LP L L R K + L+L PTREL AQ+ + + + L IGG ++ Q L + IV+ATPGR++ ++ + L++IE L++DEADRML F M+ I K RQT LFSAT S ++ +A L KP KVFV+N Q+ L+Q F+ + + E R P L +L+ FH +VFV T KQ L I L +G A LH L+Q QR ++ +FK + ++LIATD+A+RGLD+ V+ V+N+ +P T + Y HRVGRTARAGR+G +V+ E R
Sbjct: 158 SFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLERLLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTTIDVGLAIGGLDVKAQEAVL-RQNPDIVIATPGRLIDHIKNTPSF--TLDSIEVLILDEADRMLDEYFAEQMKEIINSCCK-----------------TRQTMLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLICRTFH-------------------------DHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLIATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKER 512
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Fly
Match: bel (gene:FBgn0263231 transcript:FBtr0081888) HSP 1 Score: 208.764 bits (530), Expect = 6.199e-58 Identity = 137/388 (35.31%), Postives = 201/388 (51.80%), Query Frame = 1
Query: 79 WNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWL--------------NREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRD 1200
+++PT +QK AIP+ + G D++ A+TG GKT AFL+PILN +R K L+L PTRELA QI E+ ++ ++ GG S+QM EL + H++VATPGR+ ++ + K LE I LV+DEADRML + FE + I + L + GQ RQT +FSATF I+++A L + V + + Q +L + ++ L LL IR G E TK S ++FV T K LE +L + ++H +Q +RE A+ F++G+ IL+AT +A+RGLD+ HV+ V+N+DLP + Y HR+GRT R G G A +F NE NR+
Sbjct: 315 YDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPILNQMYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMREL-DRGCHLIVATPGRLEDMITRGKVG---LENIRFLVLDEADRMLDMGFEPQIRRIVEQLNMPPT---------GQ----RQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVYEPDKRSYLLDLL-----SSIRDG-----PEYTKD------SLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEKNRN 669
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Zebrafish
Match: ddx49 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Source:ZFIN;Acc:ZDB-GENE-031030-3]) HSP 1 Score: 230.335 bits (586), Expect = 2.137e-68 Identity = 147/397 (37.03%), Postives = 219/397 (55.16%), Query Frame = 1
Query: 22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLH---LEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNK--MQIPKQLKQ-FVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEIN 1194
F+ LG+ + L + C+ G + PT +Q+ IP L G D +G A+TG GKT AF+LP+L L+ + +F L+LTPTRELA QI EQF +G GLK +I+GG +M Q EL H+VVATPGR+ + S L I+ L++DEADR+L +F D+E I +P K RQT LFSAT + ++++ + +P F ++K +Q K+L Q F+L E+V + + + HL + T +H+ S I+F TCK + L + L + ++LHS + Q QR + +FK+ ILIATD+A+RGLD+ V++V+N++ P P Y HRVGRTARAGR+G ++T V + +
Sbjct: 3 TFESLGLSEWLIQQCKQMGISRPTAVQEKCIPAILDGRDCMGCAKTGSGKTAAFVLPVLQK-LSEDPYGVFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQGLELSK-KPHVVVATPGRLADHIRSSDTIN--LNRIQFLIMDEADRLLEQGCTDFTKDLEVILSAVPVK-----------------RQTLLFSATLTDTLQQLQSIAMNRP--FFWEHKSDVQTVKELDQRFILT---PEKVKDAYLV---HLIQ----------TFQDEHDDW----SIIIFTNTCKSCQILTMMLREFNFPTISLHSMMKQRQRFANLAKFKSNVFKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQYD 356
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Zebrafish
Match: ddx23 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Source:ZFIN;Acc:ZDB-GENE-030131-6215]) HSP 1 Score: 231.491 bits (589), Expect = 2.439e-66 Identity = 148/443 (33.41%), Postives = 229/443 (51.69%), Query Frame = 1
Query: 22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILN--------DWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKK--------------KLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRL------GLAGQLPVHPDVE 1266
N+KE + + +V + CG+ +PT IQ+ AIP+ L DIIG+AETG GKT AFL+P+L D + +A+IL PTRELA QIEE+ I G G+++ +IGG Q L IV+ATPGR++ ++E +L +V+DEADRM+ + FE D++ I + +P +T++K G+ K RQT +F+AT +E++A L +P V++ + + ++++Q V++M E+ L +L A P I+FV K L L KMG +A LH Q QRE A+ K G +IL+ATD+A RG+D+ V +V+NYD+ + + Y HR+GRT RAG+SG A+TF+ + + F +++ + +L HPD +
Sbjct: 319 NWKEYSLPPHILEVIEKCGYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEDSDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRL-RMGCEIVIATPGRLIDVLENRYL---VLSRCTYVVLDEADRMIDMGFEPDVQKILEYIP----VTNQKPDTDDAEDPEKMMQNFESGKHK-YRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVILMSEGEKRKKLLEVL----ASGFEP-------------------PIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVLNYDMAKNIEDYIHRIGRTGRAGKSGVAMTFLTKEDSSVFYDLKQAILESPVSTCPPELANHPDAQ 729
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Zebrafish
Match: ddx23 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Source:ZFIN;Acc:ZDB-GENE-030131-6215]) HSP 1 Score: 231.876 bits (590), Expect = 3.736e-66 Identity = 147/443 (33.18%), Postives = 228/443 (51.47%), Query Frame = 1
Query: 22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILN--------DWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKK--------------KLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRL------GLAGQLPVHPDVE 1266
N+KE + + +V + CG+ +PT IQ+ AIP+ L DIIG+AETG GKT AFL+P+L D + +A+IL PTRELA QIEE+ I G G+++ +IGG Q L IV+ATPGR++ ++E +L +V+DEADRM+ + FE D++ I + +P +T++K G+ K RQT +F+AT +E++A L +P V++ + + ++++Q V++M E+ L +L I I+FV K L L KMG +A LH Q QRE A+ K G +IL+ATD+A RG+D+ V +V+NYD+ + + Y HR+GRT RAG+SG A+TF+ + + F +++ + +L HPD +
Sbjct: 379 NWKEYSLPPHILEVIEKCGYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEDSDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRL-RMGCEIVIATPGRLIDVLENRYL---VLSRCTYVVLDEADRMIDMGFEPDVQKILEYIP----VTNQKPDTDDAEDPEKMMQNFESGKHK-YRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVILMSEGEKRKKLLEVLASGFEPPI-----------------------IIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVLNYDMAKNIEDYIHRIGRTGRAGKSGVAMTFLTKEDSSVFYDLKQAILESPVSTCPPELANHPDAQ 789
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Zebrafish
Match: ddx27 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Source:ZFIN;Acc:ZDB-GENE-031001-8]) HSP 1 Score: 211.075 bits (536), Expect = 9.223e-59 Identity = 132/395 (33.42%), Postives = 201/395 (50.89%), Query Frame = 1
Query: 19 MNFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILND--WLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINR 1197
+ F+++ + L K G+ +PT IQK+ +PV L G DI A TG GKT AF+LP+L + RE V L+L PTREL Q+ + + + L +GG ++ Q L +++ATPGR++ + + L IE L++DEADRML FE M+ I ++ + RQT LFSAT S ++ +A L +P ++FV++ + L+Q ++V PN + G +A+ ++ ++F T KQ + I L MG LH LSQ QR ++ RFK + +IL+ATD+A+RGLD++ V+ V+N+ +P T Y HRVGRTARAG+ G +V+ V E R
Sbjct: 201 LTFQDMNLSRPLLKAISTMGFKQPTPIQKACVPVGLLGKDICACAATGTGKTAAFMLPVLERLIYKPRETQVTRVLVLVPTRELGIQVHTVARQLAQFTTISTCLAVGGLDLKSQEAAL-RAGPDVLIATPGRLIDHLHNTPSFE--LSQIEILILDEADRMLDEYFEEQMKEIIRMCAYQ-----------------RQTMLFSATMSEEVKDLASVSLKQPVRIFVNSNTDVAPYLRQ-----EFVRIRPN-------------KEGDREAIVAALL--TRTFQDHVMLFTQTKKQAHRMHILLGLMGLKVGELHGNLSQTQRLESLRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGKVGRSVSLVGETER 555
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Zebrafish
Match: ddx46 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Source:NCBI gene;Acc:321948]) HSP 1 Score: 199.134 bits (505), Expect = 6.410e-54 Identity = 130/392 (33.16%), Postives = 194/392 (49.49%), Query Frame = 1
Query: 31 ELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPV-----MFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESD-MEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNE 1188
+ GI + + + +PT IQ AIP ++G D+IG+A+TG GKT AFLLP+ L+ ++PV A+I+TPTRELA QI ++ L+ + GG +S+Q+ EL + I+V TPGR++ ++ + L + +VIDEADRM + FE M + V P RQT +FSATF +E +A +L KP +V V + + ++Q V+V++ ++ L +L + K S I+FV + L L K ++LH + Q R+ I+ FK G +L+AT +A+RGLDV + LVVNY P + Y HR GRT RAG G A TF+ E
Sbjct: 344 QCGISMKVLNALKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHILD-QRPVGEAEGPLAVIMTPTRELALQITKECKKFSKSLALRVVCVYGGTGISEQIAEL-KRGAEIIVCTPGRMIDMLGANNGRVTNLRRVTYVVIDEADRMFDMGFEPQVMRIVDNVRPD------------------RQTVMFSATFPRTMEALARRILSKPVEVQVGGRSVVCSDVEQHVIVIEEEKKFLKLLEILGHYQEK----------------------GSVIIFVDKQEHADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKNGACRLLVATSVAARGLDVKQLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITE 693
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Xenopus
Match: mki67 (marker of proliferation Ki-67 [Source:Xenbase;Acc:XB-GENE-6457930]) HSP 1 Score: 308.145 bits (788), Expect = 2.965e-98 Identity = 182/441 (41.27%), Postives = 264/441 (59.86%), Query Frame = 1
Query: 22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPV-MFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLF--ALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHPDVELSRQDFT-RSANAIKEARKEQRE 1332
F+ELG+ D LC+ C+ GW +PT IQ AIPVAL G DIIGLAETG GKTGAF LPIL L E P ++AL+LTPTRELA QI EQF A+GS G+KS +I+GG +M Q L H+V+ATPGR++ +E +K L ++ LV+DEADR+L+++FE++++ I KV+P+ R+T LFSAT + ++K+ L P K V +K Q ++L+QF + +P+ F + L + L ++ A +S ++F +TC T+ + + L +G +A+ LH Q+SQN+R ++++FK +IL+ATD+ASRGLD+ HV +V+N+D+P Y HRVGRTARAGRSG A+TFV++ + + F +E +G +LP P E R + A + AR E RE
Sbjct: 20 TFRELGVTDVLCETCEQLGWKQPTKIQIEAIPVALQGRDIIGLAETGSGKTGAFALPILQTLL--ESPQRLYALVLTPTRELAFQISEQFEALGSTIGVKSAVIVGGIDMMSQSLALAK-KPHVVIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD-----------------RKTFLFSATMTKKVQKLQRAALKDPVKCAVSSKYQTVEKLQQFYVF------IPSKFKDSYLVYIL-------------------NELAGNSFMIFCSTCNNTQRVALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKSRSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQYDVELFQRIEHLIG--KKLPAFPTQEEEVMMLNERVSEAQRFARIELRE 411
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Xenopus
Match: mki67 (marker of proliferation Ki-67 [Source:Xenbase;Acc:XB-GENE-6457930]) HSP 1 Score: 302.753 bits (774), Expect = 3.641e-96 Identity = 180/438 (41.10%), Postives = 261/438 (59.59%), Query Frame = 1
Query: 34 LGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPV-MFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLF--ALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHPDVELSRQDFT-RSANAIKEARKEQREE 1335
LG+ D LC+ C+ GW +PT IQ AIPVAL G DIIGLAETG GKTGAF LPIL L E P ++AL+LTPTRELA QI EQF A+GS G+KS +I+GG +M Q L H+V+ATPGR++ +E +K L ++ LV+DEADR+L+++FE++++ I KV+P+ R+T LFSAT + ++K+ L P K V +K Q ++L+QF + +P+ F + L + L ++ A +S ++F +TC T+ + + L +G +A+ LH Q+SQN+R ++++FK +IL+ATD+ASRGLD+ HV +V+N+D+P Y HRVGRTARAGRSG A+TFV++ + + F +E +G +LP P E R + A + AR E RE
Sbjct: 20 LGVTDVLCETCEQLGWKQPTKIQIEAIPVALQGRDIIGLAETGSGKTGAFALPILQTLL--ESPQRLYALVLTPTRELAFQISEQFEALGSTIGVKSAVIVGGIDMMSQSLALAK-KPHVVIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD-----------------RKTFLFSATMTKKVQKLQRAALKDPVKCAVSSKYQTVEKLQQFYVF------IPSKFKDSYLVYIL-------------------NELAGNSFMIFCSTCNNTQRVALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKSRSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQYDVELFQRIEHLIG--KKLPAFPTQEEEVMMLNERVSEAQRFARIELREH 408
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Xenopus
Match: mki67 (marker of proliferation Ki-67 [Source:Xenbase;Acc:XB-GENE-6457930]) HSP 1 Score: 302.753 bits (774), Expect = 4.105e-96 Identity = 180/442 (40.72%), Postives = 262/442 (59.28%), Query Frame = 1
Query: 22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPV-MFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLF--ALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHPDVELSRQDFT-RSANAIKEARKEQREE 1335
N+ G+ D LC+ C+ GW +PT IQ AIPVAL G DIIGLAETG GKTGAF LPIL L E P ++AL+LTPTRELA QI EQF A+GS G+KS +I+GG +M Q L H+V+ATPGR++ +E +K L ++ LV+DEADR+L+++FE++++ I KV+P+ R+T LFSAT + ++K+ L P K V +K Q ++L+QF + +P+ F + L + L ++ A +S ++F +TC T+ + + L +G +A+ LH Q+SQN+R ++++FK +IL+ATD+ASRGLD+ HV +V+N+D+P Y HRVGRTARAGRSG A+TFV++ + + F +E +G +LP P E R + A + AR E RE
Sbjct: 15 NYGNPGVTDVLCETCEQLGWKQPTKIQIEAIPVALQGRDIIGLAETGSGKTGAFALPILQTLL--ESPQRLYALVLTPTRELAFQISEQFEALGSTIGVKSAVIVGGIDMMSQSLALAK-KPHVVIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD-----------------RKTFLFSATMTKKVQKLQRAALKDPVKCAVSSKYQTVEKLQQFYVF------IPSKFKDSYLVYIL-------------------NELAGNSFMIFCSTCNNTQRVALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKSRSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQYDVELFQRIEHLIG--KKLPAFPTQEEEVMMLNERVSEAQRFARIELREH 407
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Xenopus
Match: mki67 (marker of proliferation Ki-67 [Source:Xenbase;Acc:XB-GENE-6457930]) HSP 1 Score: 300.827 bits (769), Expect = 1.346e-95 Identity = 179/437 (40.96%), Postives = 260/437 (59.50%), Query Frame = 1
Query: 37 GIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPV-MFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLF--ALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHPDVELSRQDFT-RSANAIKEARKEQREE 1335
G+ D LC+ C+ GW +PT IQ AIPVAL G DIIGLAETG GKTGAF LPIL L E P ++AL+LTPTRELA QI EQF A+GS G+KS +I+GG +M Q L H+V+ATPGR++ +E +K L ++ LV+DEADR+L+++FE++++ I KV+P+ R+T LFSAT + ++K+ L P K V +K Q ++L+QF + +P+ F + L + L ++ A +S ++F +TC T+ + + L +G +A+ LH Q+SQN+R ++++FK +IL+ATD+ASRGLD+ HV +V+N+D+P Y HRVGRTARAGRSG A+TFV++ + + F +E +G +LP P E R + A + AR E RE
Sbjct: 9 GVTDVLCETCEQLGWKQPTKIQIEAIPVALQGRDIIGLAETGSGKTGAFALPILQTLL--ESPQRLYALVLTPTRELAFQISEQFEALGSTIGVKSAVIVGGIDMMSQSLALAK-KPHVVIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD-----------------RKTFLFSATMTKKVQKLQRAALKDPVKCAVSSKYQTVEKLQQFYVF------IPSKFKDSYLVYIL-------------------NELAGNSFMIFCSTCNNTQRVALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKSRSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQYDVELFQRIEHLIG--KKLPAFPTQEEEVMMLNERVSEAQRFARIELREH 396
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Xenopus
Match: mki67 (marker of proliferation Ki-67 [Source:Xenbase;Acc:XB-GENE-6457930]) HSP 1 Score: 301.212 bits (770), Expect = 1.903e-95 Identity = 179/437 (40.96%), Postives = 260/437 (59.50%), Query Frame = 1
Query: 37 GIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPV-MFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLF--ALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHPDVELSRQDFT-RSANAIKEARKEQREE 1335
G+ D LC+ C+ GW +PT IQ AIPVAL G DIIGLAETG GKTGAF LPIL L E P ++AL+LTPTRELA QI EQF A+GS G+KS +I+GG +M Q L H+V+ATPGR++ +E +K L ++ LV+DEADR+L+++FE++++ I KV+P+ R+T LFSAT + ++K+ L P K V +K Q ++L+QF + +P+ F + L + L ++ A +S ++F +TC T+ + + L +G +A+ LH Q+SQN+R ++++FK +IL+ATD+ASRGLD+ HV +V+N+D+P Y HRVGRTARAGRSG A+TFV++ + + F +E +G +LP P E R + A + AR E RE
Sbjct: 27 GVTDVLCETCEQLGWKQPTKIQIEAIPVALQGRDIIGLAETGSGKTGAFALPILQTLL--ESPQRLYALVLTPTRELAFQISEQFEALGSTIGVKSAVIVGGIDMMSQSLALAK-KPHVVIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD-----------------RKTFLFSATMTKKVQKLQRAALKDPVKCAVSSKYQTVEKLQQFYVF------IPSKFKDSYLVYIL-------------------NELAGNSFMIFCSTCNNTQRVALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKSRSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQYDVELFQRIEHLIG--KKLPAFPTQEEEVMMLNERVSEAQRFARIELREH 414
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Mouse
Match: Ddx47 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Source:MGI Symbol;Acc:MGI:1915005]) HSP 1 Score: 302.368 bits (773), Expect = 6.122e-96 Identity = 180/439 (41.00%), Postives = 258/439 (58.77%), Query Frame = 1
Query: 22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPV-MFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHPDVELSRQDFTRSAN-AIKEARKEQRE 1332
FK+LG+ D LC+ C GW +PT IQ AIP+AL G DIIGLAETG GKTGAF LPILN L E P +FAL+LTPTRELA QI EQF A+GS G++ +I+GG + Q L HIV+ATPGR++ +E +K L ++ LV+DEADR+L+++FE++++ I KV+P+ R+T LFSAT + ++K+ L P K V +K Q ++L+Q+ L + + L +L ++ A +S ++F +TC T+ + L +G +A+ LH Q+SQ++R ++++FK +IL+ATD+ASRGLD+ HV +VVN+D+P Y HRVGRTARAGRSG A+TFV + + + F +E +G +LPV P + T N A + AR E RE
Sbjct: 25 TFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL--ETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAK-KPHIVIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD-----------------RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYIL-----------------------NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG--KKLPVFPTQDEEVMMLTERVNEAQRFARMELRE 416
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Mouse
Match: Ddx47 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Source:MGI Symbol;Acc:MGI:1915005]) HSP 1 Score: 276.174 bits (705), Expect = 7.103e-87 Identity = 164/413 (39.71%), Postives = 236/413 (57.14%), Query Frame = 1
Query: 22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPV-MFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHP 1257
FK+LG+ D LC+ C GW +PT IQ AIP+AL G DIIGLAETG GKTGAF LPILN L E P +FAL+LTPTRELA QI EQF A+GS G++ ATPGR++ +E +K L ++ LV+DEADR+L+++FE++++ I KV+P+ R+T LFSAT + ++K+ L P K V +K Q ++L+Q+ L + + L +L ++ A +S ++F +TC T+ + L +G +A+ LH Q+SQ++R ++++FK +IL+ATD+ASRGLD+ HV +VVN+D+P Y HRVGRTARAGRSG A+TFV + + + F +E +G +LPV P
Sbjct: 25 TFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL--ETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQ-------------------------CATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD-----------------RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYIL-----------------------NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG--KKLPVFP 366
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Mouse
Match: Ddx49 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Source:MGI Symbol;Acc:MGI:2136689]) HSP 1 Score: 237.269 bits (604), Expect = 8.638e-71 Identity = 147/394 (37.31%), Postives = 213/394 (54.06%), Query Frame = 1
Query: 22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLH---LEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEIN 1194
F E+G+ L + C+ G +PT +Q IP L G D +G A+TG GKT AF+LPIL L+ + +F L+LTPTRELA QI EQF +G GLK +I+GG +M Q EL H+V+ATPGR+ + S ++ I+ LV+DEADR+L +F +D+E I +P + RQT LFSAT + ++++ G +P ++ +QL Q L++ E+V + + + HL + + Q S I+F TCK + L + L K VALHS + Q +R A+ +FK+ ILIATD+ASRGLD+ V++V+N++ P P Y HRVGRTARAGR G A+T V + +
Sbjct: 3 GFAEIGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK-LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSR-KPHVVIATPGRLADHLRSSNTFN--MKKIQFLVMDEADRLLEQGCTDFTTDLETILAAVPAR-----------------RQTLLFSATLTDTLKELQGLATNEPFFWEAQATVRTVEQLDQRYLLVP--EKVKDAYLV---HLVQTF--------------QDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYD 356
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Mouse
Match: Ddx23 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Source:MGI Symbol;Acc:MGI:1921601]) HSP 1 Score: 231.876 bits (590), Expect = 5.828e-66 Identity = 149/439 (33.94%), Postives = 227/439 (51.71%), Query Frame = 1
Query: 22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILN--------DWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLP-------KKSSITSKKKLAK---GQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRL------GLAGQLPVHPDVE 1266
++K+ + + +V CG+ EPT IQ+ AIP+ L DIIG+AETG GKT AFL+P+L D + +A+IL PTRELA QIEE+ I G G+++ +IGG Q L IV+ATPGR++ ++E +L +V+DEADRM+ + FE D++ I + +P + +K LA G+ K RQT +F+AT +E++A L +P V++ + + ++++Q V +M E+ L A+L I I+FV K L L KMG +A LH Q QRE A+ K G +IL+ATD+A RG+D+ V +VVNYD+ + + Y HR+GRT RAG+SG A+TF+ + + F +++ + +L HPD +
Sbjct: 391 SWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRL-RMGCEIVIATPGRLIDVLENRYL---VLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHK-YRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPI-----------------------IIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAILESPVSSCPPELANHPDAQ 801
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Mouse
Match: Ddx47 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Source:MGI Symbol;Acc:MGI:1915005]) HSP 1 Score: 213.386 bits (542), Expect = 3.043e-63 Identity = 149/413 (36.08%), Postives = 208/413 (50.36%), Query Frame = 1
Query: 22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPV-MFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHP 1257
FK+LG+ D LC+ C GW +PT IQ AIP+AL G DIIGLAETG GKTGAF LPILN L E P +FAL+LTPTRELA QI EQF A+GS G++ +I+GG + Q L HIV+ATPGR++ +E +K L ++ LV+DEADR+L+++FE++++ I KV+P+ R+T LFSAT + ++K+ L P K V +K Q ++L+Q+ L + +K +S+R S LNK A A ++ R L I ++++ DI + D H RVGRTARAGRSG A+TFV + + + F +E +G +LPV P
Sbjct: 22 TFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL--ETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAK-KPHIVIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD-----------------RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFI-------------------------------PSKFKSKRLGS------------------LNKFKAKARSILLATDVASRGLDIP-----HVDVVVNFDIPTHSKDYIH------------------RVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG--KKLPVFP 338
BLAST of ATP-dependent rRNA helicase RRP3 vs. UniProt/SwissProt
Match: sp|Q29S22|DDX47_BOVIN (Probable ATP-dependent RNA helicase DDX47 OS=Bos taurus OX=9913 GN=DDX47 PE=2 SV=1) HSP 1 Score: 302.753 bits (774), Expect = 2.750e-95 Identity = 180/439 (41.00%), Postives = 258/439 (58.77%), Query Frame = 1
Query: 22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPV-MFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHPDVELSRQDFT-RSANAIKEARKEQRE 1332
FK+LG+ D LC+ C GW +PT IQ AIP+AL G DIIGLAETG GKTGAF LPILN L E P +FAL+LTPTRELA QI EQF A+GS G++ +I+GG + Q L HIV+ATPGR++ +E +K L ++ LV+DEADR+L+++FE++++ I KV+P+ R+T LFSAT + ++K+ L P K V +K Q ++L+Q+ L + + L +L ++ A +S ++F +TC T+ + L +G +A+ LH Q+SQ++R ++++FK +IL+ATD+ASRGLD+ HV +VVN+D+P Y HRVGRTARAGRSG A+TFV + + + F +E +G +LPV P + T R A + AR E RE
Sbjct: 27 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL--ETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAK-KPHIVIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD-----------------RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYIL-----------------------NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG--KKLPVFPTQDDEVMMLTERVTEAQRFARMELRE 418
BLAST of ATP-dependent rRNA helicase RRP3 vs. UniProt/SwissProt
Match: sp|Q9CWX9|DDX47_MOUSE (Probable ATP-dependent RNA helicase DDX47 OS=Mus musculus OX=10090 GN=Ddx47 PE=2 SV=2) HSP 1 Score: 302.368 bits (773), Expect = 4.282e-95 Identity = 180/439 (41.00%), Postives = 258/439 (58.77%), Query Frame = 1
Query: 22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPV-MFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHPDVELSRQDFTRSAN-AIKEARKEQRE 1332
FK+LG+ D LC+ C GW +PT IQ AIP+AL G DIIGLAETG GKTGAF LPILN L E P +FAL+LTPTRELA QI EQF A+GS G++ +I+GG + Q L HIV+ATPGR++ +E +K L ++ LV+DEADR+L+++FE++++ I KV+P+ R+T LFSAT + ++K+ L P K V +K Q ++L+Q+ L + + L +L ++ A +S ++F +TC T+ + L +G +A+ LH Q+SQ++R ++++FK +IL+ATD+ASRGLD+ HV +VVN+D+P Y HRVGRTARAGRSG A+TFV + + + F +E +G +LPV P + T N A + AR E RE
Sbjct: 25 TFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL--ETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAK-KPHIVIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD-----------------RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYIL-----------------------NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG--KKLPVFPTQDEEVMMLTERVNEAQRFARMELRE 416
BLAST of ATP-dependent rRNA helicase RRP3 vs. UniProt/SwissProt
Match: sp|Q9H0S4|DDX47_HUMAN (Probable ATP-dependent RNA helicase DDX47 OS=Homo sapiens OX=9606 GN=DDX47 PE=1 SV=1) HSP 1 Score: 300.827 bits (769), Expect = 1.417e-94 Identity = 179/439 (40.77%), Postives = 259/439 (59.00%), Query Frame = 1
Query: 22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPV-MFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHPDVELSRQDFT-RSANAIKEARKEQRE 1332
FK+LG+ D LC+ C GW +PT IQ AIP+AL G DIIGLAETG GKTGAF LPILN L E P +FAL+LTPTRELA QI EQF A+GS G++S +I+GG + Q L HI++ATPGR++ +E +K L ++ LV+DEADR+L+++FE++++ I KV+P+ R+T LFSAT + ++K+ L P K V +K Q ++L+Q+ + + + L +L ++ A +S ++F +TC T+ + L +G +A+ LH Q+SQ++R ++++FK +IL+ATD+ASRGLD+ HV +VVN+D+P Y HRVGRTARAGRSG A+TFV + + + F +E +G +LP P + T R A A + AR E RE
Sbjct: 25 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL--ETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK-KPHIIIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD-----------------RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYIL-----------------------NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG--KKLPGFPTQDDEVMMLTERVAEAQRFARMELRE 416
BLAST of ATP-dependent rRNA helicase RRP3 vs. UniProt/SwissProt
Match: sp|Q4IFI0|RRP3_GIBZE (ATP-dependent rRNA helicase RRP3 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) OX=229533 GN=RRP3 PE=3 SV=1) HSP 1 Score: 293.123 bits (749), Expect = 3.036e-91 Identity = 168/406 (41.38%), Postives = 238/406 (58.62%), Query Frame = 1
Query: 16 KMNFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVD-NKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLG 1230
K FK+LG+ D LC+ C+ + PT IQ+ +IPVAL G DIIGLAETG GKT AF LP+L L++ +P +F L+L PTRELA QI + F A+GS L+ +I+GG +M Q LG HIVVATPGR+V +EK+K L T++ L++DEADR+L ++F ++ I K +P++ R+T LFSAT SS IE + L P KV + NK Q L Q L + + ++ +L L+ H A S IVF T +T+ + I L +G A+ LH QLSQ+ R A+++F++G +IL+ATD+A+RGLD+ V +V+NYDLPQ Y HRVGRTARAG+SG A++ V + + + ++ +E LG
Sbjct: 59 KKTFKDLGVNDALCEACEKLNYKYPTPIQEKSIPVALQGRDIIGLAETGSGKTAAFALPVLQALLDKPQP-LFGLVLAPTRELATQIGQAFEALGSLISLRCAVIVGGLDMVPQAIALGK-KPHIVVATPGRLVDHLEKTKGFS--LRTLKYLIMDEADRLLDMDFGPSIDKILKFVPRE-----------------RRTYLFSATISSKIESLQRASLRDPVKVSISSNKYQTVSTLLQNYLFIPHPQKDVHLIYLINEH-----------------------AGQSTIVFTRTVWETQRVSILLRTLGFGAIPLHGQLSQSSRLGALNKFRSGTRDILVATDVAARGLDIPSVDVVLNYDLPQDSKTYIHRVGRTARAGKSGVAISLVTQYDLEIYLRIEAALG 420
BLAST of ATP-dependent rRNA helicase RRP3 vs. UniProt/SwissProt
Match: sp|P34580|DDX47_CAEEL (Putative ATP-dependent RNA helicase T26G10.1 OS=Caenorhabditis elegans OX=6239 GN=T26G10.1 PE=3 SV=1) HSP 1 Score: 292.738 bits (748), Expect = 6.063e-91 Identity = 162/403 (40.20%), Postives = 236/403 (58.56%), Query Frame = 1
Query: 22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLG 1230
+F ELG+ LC CQ GW +P+ IQ++A+P AL G D+IGLAETG GKTGAF +P+L L+ + F L+LTPTRELA QI +QF A+GS GL + +I+GG +M+ Q L HI+VATPGR+V +E +K L+ ++ L++DEADR+L+++FE +++ I KV+P++ R+T LFSAT + + K+ L P +V V ++ + LKQ + + + L LL H GN SAIVF TC T + + L ++G AV LH Q+SQ +R ++++FK+ IL+ TD+A+RGLD+ HV +V+NYD+P Y HRVGRTARAGRSG A+T V + + + + +E LG
Sbjct: 45 SFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLDHPQ-AFFCLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALARR-PHIIVATPGRLVDHLENTKGFN--LKALKFLIMDEADRILNMDFEVELDKILKVIPRE-----------------RRTYLFSATMTKKVSKLERASLRDPARVSVSSRYKTVDNLKQHYIFVPNKYKETYLVYLLNEH-------AGN----------------SAIVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDVEAYQKIEANLG 403
BLAST of ATP-dependent rRNA helicase RRP3 vs. TrEMBL
Match: A0A0L0C5W8 (Uncharacterized protein OS=Lucilia cuprina OX=7375 GN=FF38_07075 PE=3 SV=1) HSP 1 Score: 313.538 bits (802), Expect = 2.701e-96 Identity = 178/412 (43.20%), Postives = 250/412 (60.68%), Query Frame = 1
Query: 19 MNFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVH 1254
M +KELG+ D LCK C+ W P+ IQK AIPVAL G D+IGLAETG GKTGAF LPIL L+ + FALILTPTRELA QI EQF A+GS G+K +++GG +M Q +LG HI++ATPGR+V +E K L+ I+ LV+DEADR+L+++FE +++ I KVLPK+ R+T LFSAT + ++K+ L P KV V NK Q +QL+Q+ + + + L +L ++ A +S ++F +TC T + L +G +A+ LH Q+SQN+R A+++FK +ILI+TD+ASRGLD+ HV +V+N+D+P Y HRVGRTARAGRSG A+TFV + + + + +E LG QLP++
Sbjct: 68 MTWKELGLNDTLCKSCEELKWKAPSKIQKEAIPVALQGKDVIGLAETGSGKTGAFALPILQALLDNPQR-YFALILTPTRELAFQISEQFEALGSSIGVKCCVVVGGMDMVSQALQLGK-KPHIIIATPGRLVDHLENLKGFN--LKAIKYLVMDEADRILNMDFEVELDKILKVLPKE-----------------RRTFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQYYIFIPVKYKDVYLVHIL-----------------------NELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVLNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQRIEHLLG--KQLPLY 433
BLAST of ATP-dependent rRNA helicase RRP3 vs. TrEMBL
Match: A0A1I8PJ10 (Uncharacterized protein OS=Stomoxys calcitrans OX=35570 GN=106081731 PE=3 SV=1) HSP 1 Score: 313.153 bits (801), Expect = 3.864e-96 Identity = 176/413 (42.62%), Postives = 252/413 (61.02%), Query Frame = 1
Query: 16 KMNFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVH 1254
++N+K+LG+ D LCK C+ W P+ IQK AIPVAL G D+IGLAETG GKTGAF LPIL L+ + FALILTPTRELA QI EQF A+GS G+K +++GG +M Q +LG HI++ATPGR+V +E K L+ I+ LV+DEADR+L+++FE +++ I KVLP++ R+T LFSAT + ++K+ L P KV V NK Q +QL+Q+ + + + L +L ++ A +S ++F +TC T + L +G +A+ LH Q+SQN+R A+++FK +ILI+TD+ASRGLD+ HV +V+N+D+P Y HRVGRTARAGRSG A+TFV + + + + +E LG QLP++
Sbjct: 62 ELNWKDLGLNDTLCKACEELKWKAPSKIQKEAIPVALQGKDVIGLAETGSGKTGAFALPILQALLDSPQR-YFALILTPTRELAFQISEQFEALGSSIGVKCCVVVGGMDMVSQALQLGK-KPHIIIATPGRLVDHLENLKGFN--LKAIKYLVMDEADRILNMDFEVELDKILKVLPRE-----------------RRTFLFSATMTKKVKKLQRASLKDPVKVEVSNKFQTVEQLQQYYIFIPVKYKDVYLVHIL-----------------------NEMAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVLNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQRIEHLLG--KQLPLY 428
BLAST of ATP-dependent rRNA helicase RRP3 vs. TrEMBL
Match: A0A1I8N8U9 (Uncharacterized protein OS=Musca domestica OX=7370 GN=101895583 PE=3 SV=1) HSP 1 Score: 311.227 bits (796), Expect = 2.054e-95 Identity = 178/414 (43.00%), Postives = 252/414 (60.87%), Query Frame = 1
Query: 16 KMNFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPV-MFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVH 1254
++ +KELG+ + LCK C+ W P+ IQK AIPVAL G D+IGLAETG GKTGAF LPIL+ L E P FALILTPTRELA QI EQF A+GS G+K +++GG +M Q +LG HI++ATPGR+V +E K L+ I+ LV+DEADR+L+++FE +++ I KVLPK+ R+T LFSAT + ++K+ L P KV V NK Q +QL+Q+ + + + L +L ++ A +S ++F +TC T + L +G +A+ LH Q+SQN+R A+++FK +ILI+TD+ASRGLD+ HV +V+N+D+P Y HRVGRTARAGRSG A+TFV + + + + +E LG QLP++
Sbjct: 68 ELTWKELGLNETLCKACEELKWKAPSKIQKEAIPVALQGKDVIGLAETGSGKTGAFALPILHALL--ENPQRYFALILTPTRELAFQISEQFEALGSSIGVKCCVVVGGMDMVSQALQLGK-KPHIIIATPGRLVDHLENLKGFN--LKAIKYLVMDEADRILNMDFEVELDKILKVLPKE-----------------RRTFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQYYIFIPVKYKDVYLVHIL-----------------------NELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVLNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQRIEHLLG--KQLPLY 434
BLAST of ATP-dependent rRNA helicase RRP3 vs. TrEMBL
Match: W8BQX6 (Putative ATP-dependent RNA helicase DDX47 OS=Ceratitis capitata OX=7213 GN=DDX47 PE=2 SV=1) HSP 1 Score: 310.842 bits (795), Expect = 2.062e-95 Identity = 181/415 (43.61%), Postives = 252/415 (60.72%), Query Frame = 1
Query: 19 MNFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPV-MFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFA-LLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHP 1257
+ +K+LG+ D LCK C+ W P+ IQK AIPVAL G DIIGLAETG GKTGAF LPIL+ L E P FALILTPTRELA QI EQF A+GS G+K +++GG +M Q +L HI++ATPGR+V +E K L+ I+ LV+DEADR+L+++FE +++ I KVLP++ R+T LFSAT + ++K+ L P KV V NK Q +QL+Q+ + +P F + H+ ++ GN S ++F +TC T + L +G +A+ LH Q+SQN+R A+++FK +ILI+TD+ASRGLD+ HV +V+N+D+P Y HRVGRTARAGRSG AVTFV + + + + +E LG QLP++P
Sbjct: 56 ITWKDLGLTDALCKACEELKWKAPSKIQKEAIPVALQGKDIIGLAETGSGKTGAFALPILHALL--ENPQRYFALILTPTRELAFQISEQFEALGSSIGVKCCVVVGGMDMVSQALQLAK-KPHIIIATPGRLVDHLENMKGFN--LKAIKYLVMDEADRILNMDFEVELDKILKVLPRE-----------------RRTFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQYYIF------IPVKFKDVYLVHIINEL--AGN----------------SFMIFCSTCANTVRTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVLNFDIPTHSKDYIHRVGRTARAGRSGKAVTFVTQYDVELYQRIEHLLG--KQLPLYP 422
BLAST of ATP-dependent rRNA helicase RRP3 vs. TrEMBL
Match: A0A5G3IX80 (Marker of proliferation Ki-67 OS=Xenopus tropicalis OX=8364 GN=mki67 PE=3 SV=1) HSP 1 Score: 308.145 bits (788), Expect = 4.656e-95 Identity = 182/441 (41.27%), Postives = 264/441 (59.86%), Query Frame = 1
Query: 22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPV-MFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLF--ALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHPDVELSRQDFT-RSANAIKEARKEQRE 1332
F+ELG+ D LC+ C+ GW +PT IQ AIPVAL G DIIGLAETG GKTGAF LPIL L E P ++AL+LTPTRELA QI EQF A+GS G+KS +I+GG +M Q L H+V+ATPGR++ +E +K L ++ LV+DEADR+L+++FE++++ I KV+P+ R+T LFSAT + ++K+ L P K V +K Q ++L+QF + +P+ F + L + L ++ A +S ++F +TC T+ + + L +G +A+ LH Q+SQN+R ++++FK +IL+ATD+ASRGLD+ HV +V+N+D+P Y HRVGRTARAGRSG A+TFV++ + + F +E +G +LP P E R + A + AR E RE
Sbjct: 20 TFRELGVTDVLCETCEQLGWKQPTKIQIEAIPVALQGRDIIGLAETGSGKTGAFALPILQTLL--ESPQRLYALVLTPTRELAFQISEQFEALGSTIGVKSAVIVGGIDMMSQSLALAK-KPHVVIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD-----------------RKTFLFSATMTKKVQKLQRAALKDPVKCAVSSKYQTVEKLQQFYVF------IPSKFKDSYLVYIL-------------------NELAGNSFMIFCSTCNNTQRVALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKSRSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQYDVELFQRIEHLIG--KKLPAFPTQEEEVMMLNERVSEAQRFARIELRE 411
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Cavefish
Match: ddx47 (DEAD-box helicase 47 [Source:NCBI gene;Acc:103034543]) HSP 1 Score: 293.508 bits (750), Expect = 1.534e-92 Identity = 170/439 (38.72%), Postives = 254/439 (57.86%), Query Frame = 1
Query: 22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHPDVELSRQDFT-RSANAIKEARKEQREE 1335
+FKELG+ + LC+ C+ GW +PT IQ AIPVAL G D+IGLAETG GKTGAF LPIL L+ + + L+LTPTRELA QI EQF A+GS G+K+ +++GG +M Q L HIV+ATPGR++ +E +K L + LV+DEADR+L+++FES+++ I KV+P++ R T LFSAT + ++K+ L P K V K +L+Q+ + + + L ++L ++ A +S ++F TC + + + L +G +A+ LH Q+SQN+R ++++FK ++L+ATD+ASRGLD+ HV V+N+D+P Y HRVGRTARAGRSG ++TFV + + + F +E +G +LP P E R + A + AR E +E+
Sbjct: 29 SFKELGVTEVLCEACEQLGWKQPTKIQIEAIPVALEGRDVIGLAETGSGKTGAFALPILQTLLSHPQR-LHTLVLTPTRELAFQIAEQFEALGSSIGVKTAVVVGGIDMMSQAMVLAK-KPHIVIATPGRLIDHLENTKGFN--LRALRFLVMDEADRILNMDFESEVDKILKVIPRE-----------------RHTFLFSATMTKKVQKLQRAALKDPVKCAVSTKYATVDKLQQYYIFIPAKYKDCYLVSIL-----------------------NELAGNSFMIFCGTCNNAQRVALLLRNLGITAIPLHGQMSQNKRLGSLNKFKAKSRSVLLATDVASRGLDIPHVDCVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEALIG--KKLPAFPTQEEEVMMLVERVSEAQRFARMEMKEQ 421
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Cavefish
Match: ddx49 (DEAD-box helicase 49 [Source:NCBI gene;Acc:103043246]) HSP 1 Score: 236.113 bits (601), Expect = 1.382e-70 Identity = 168/485 (34.64%), Postives = 259/485 (53.40%), Query Frame = 1
Query: 25 FKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLH---LEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQI--PKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHPDVE------LSRQDFTRSANAIK-------EARKEQREEELKLNGFDMDFSHVNSNFSTKRAKLSAKEK 1425
F LG+ D L + C+ G PT +Q+S +P L G D +G A+TG GKT AF+LP+L L + +F L+LTPTRELA QI EQF A+G GL+ +I+GG +M Q EL HIVVATPGR+ + S ++ I+ L++DEADR+L +F D+E I V+P K RQT LFSAT + ++++ + +P F +NK ++ +L Q ++ E+V + + + HL +KI+ +H+ S ++F TCK + L + L + A++LHS + Q QR + +FK+ ILIATD+A+RGLD+ V++V+N++ P P Y HRVGRTARAGR+G ++T V + + +E++ + +L +P E L++ + TR IK E ++ +++++ L G D DF N KR K A+ K
Sbjct: 4 FAALGLSDWLIQQCKQMGITRPTPVQQSCVPAILAGRDCMGCAKTGSGKTAAFVLPVLQK-LAEDPYGIFCLVLTPTRELAYQIAEQFRALGKPLGLRDCIIVGGMDMVAQGLELSK-KPHIVVATPGRLADHIRSSDTFN--MKRIKFLILDEADRLLEQGCTDFTKDLEVILSVVPAK-----------------RQTLLFSATLTDTLQELKTIAMNEP--FFWENKSEVRTVDELDQRYILTP--EKVKDAYLV---HLIQKIQ----------DEHDDW----SVMIFTNTCKNCQILTMMLREFKFPAISLHSMMKQRQRFANLAKFKSNVFKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQYDIHLVNAIEEQ--IQTKLKEYPVEEKEVLKILTQVNVTRRQCEIKLESTDFGEKKEINKKKKMILEGKDPDFEEKRKNELAKRKKGKAEGK 444
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Cavefish
Match: ddx23 (DEAD-box helicase 23 [Source:NCBI gene;Acc:103037499]) HSP 1 Score: 227.639 bits (579), Expect = 1.403e-64 Identity = 147/443 (33.18%), Postives = 226/443 (51.02%), Query Frame = 1
Query: 22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILN--------DWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKK--------------KLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRL------GLAGQLPVHPDVE 1266
N+KE + + +V CG+ EPT IQ+ AIP+ L DIIG+AETG GKT AFL+P+L D + +A+IL PTRELA QIEE+ I G G+++ +IGG Q L IV+ATPGR++ ++E +L +V+DEADRM+ + FE D++ I + +P +T++K G+ K RQT +F+AT +E++A L + V++ + + ++++Q V++M E+ L +L I I+FV K L L KMG +A LH Q QRE A+ K G +IL+ATD+A RG+D+ V +V+NYD+ + + Y HR+GRT RAG+SG A+TF+ + + F +++ + +L HPD +
Sbjct: 385 NWKEFDLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEDSDQGPYAVILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRL-RMGCEIVIATPGRLIDVLENRYL---VLGRCTYVVLDEADRMIDMGFEPDVQKILEYIP----VTNQKPDTDEAEDPEKMTQNFESGKHK-YRQTVMFTATMPPAVERLARSYLRRAAVVYIGSAGKPHERVEQKVILMSEGEKRKKLLEVLSRGFEPPI-----------------------IIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIHDVSMVLNYDMAKNIEDYIHRIGRTGRAGKSGVAMTFLTKEDSSVFYDLKQAILESPVSTCPPELTNHPDAQ 795
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Cavefish
Match: ddx27 (DEAD-box helicase 27 [Source:NCBI gene;Acc:103032272]) HSP 1 Score: 211.846 bits (538), Expect = 2.486e-59 Identity = 133/395 (33.67%), Postives = 200/395 (50.63%), Query Frame = 1
Query: 19 MNFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLN--REKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINR 1197
+ F+++ + L K G+ +PT +QK+ +PV L G DI A TG GKT AF+LP+L L RE V L+L PTREL Q+ + + + L +GG ++ Q L I++ATPGR++ + + L IE L++DEADRML FE M+ I ++ + RQT LFSAT S ++ +A L +P ++FV++ + L+Q ++V P R G +A+ + + ++F T KQ + I L MG LH LSQ QR ++ RFK + +IL+ATD+A+RGLD++ V+ V+N+ +P T Y HRVGRTARAG+ G +V+ V E R
Sbjct: 166 LTFQDMNLSRPLLKAITTMGFKQPTPVQKACVPVGLLGKDICACAATGTGKTAAFMLPVLERLLYKPRETQVTRVLVLVPTRELGIQVHSVARQLSQFTTISTCLAVGGLDLKSQEAAL-RAGPDILIATPGRLIDHLHNTPSFE--LSQIEVLILDEADRMLDEYFEEQMKEIIRLCAYQ-----------------RQTMLFSATMSEEVKDLASVSLKQPVRIFVNSNTDVAPYLRQ-----EFVRIRP-------------AREGDREAIVAALLTRTFQ--DHVMLFTQTKKQAHRMHILLGLMGLKVGELHGNLSQTQRLESLRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGKVGRSVSLVGETER 520
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Cavefish
Match: ddx27 (DEAD-box helicase 27 [Source:NCBI gene;Acc:103032272]) HSP 1 Score: 211.846 bits (538), Expect = 4.296e-59 Identity = 133/395 (33.67%), Postives = 200/395 (50.63%), Query Frame = 1
Query: 19 MNFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLN--REKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINR 1197
+ F+++ + L K G+ +PT +QK+ +PV L G DI A TG GKT AF+LP+L L RE V L+L PTREL Q+ + + + L +GG ++ Q L I++ATPGR++ + + L IE L++DEADRML FE M+ I ++ + RQT LFSAT S ++ +A L +P ++FV++ + L+Q ++V P R G +A+ + + ++F T KQ + I L MG LH LSQ QR ++ RFK + +IL+ATD+A+RGLD++ V+ V+N+ +P T Y HRVGRTARAG+ G +V+ V E R
Sbjct: 196 LTFQDMNLSRPLLKAITTMGFKQPTPVQKACVPVGLLGKDICACAATGTGKTAAFMLPVLERLLYKPRETQVTRVLVLVPTRELGIQVHSVARQLSQFTTISTCLAVGGLDLKSQEAAL-RAGPDILIATPGRLIDHLHNTPSFE--LSQIEVLILDEADRMLDEYFEEQMKEIIRLCAYQ-----------------RQTMLFSATMSEEVKDLASVSLKQPVRIFVNSNTDVAPYLRQ-----EFVRIRP-------------AREGDREAIVAALLTRTFQ--DHVMLFTQTKKQAHRMHILLGLMGLKVGELHGNLSQTQRLESLRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGKVGRSVSLVGETER 550
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000000216.1 (pep scaffold:Pmarinus_7.0:GL476721:117971:126978:-1 gene:ENSPMAG00000000186.1 transcript:ENSPMAT00000000216.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 301.982 bits (772), Expect = 3.958e-97 Identity = 174/437 (39.82%), Postives = 261/437 (59.73%), Query Frame = 1
Query: 37 GIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHPDVELSRQDFT-RSANAIKEARKEQREEELK 1344
G+ + LC+ C+ GW +PT IQ AIPVAL G DIIGLAETG GKTGAF LPIL L+ + +FAL+LTPTRELA QI EQF A+GS G+KS +++GG +M Q L H+++ATPGR+V +E +K + ++ LV+DEADR+L+++FE++++ I KV+PK+ R+T LFSAT + ++K+ L +P K V K Q ++L+Q+ + + + L +L ++ A +S I+F +TC T+ + + L +G +A+ LH Q+SQN+R ++++FK +IL+ATD+ASRGLD+ HV +V+N+D+P Y HRVGRTARAGRSG ++TFV++ + + F +E +G +LP P E T R + A + AR E +E + K
Sbjct: 1 GVTEVLCEACEQLGWKQPTKIQVEAIPVALQGKDIIGLAETGSGKTGAFALPILQALLDAPQR-LFALVLTPTRELAFQISEQFEALGSSIGIKSAVVVGGIDMMSQSLALAK-KPHVIIATPGRLVDHLENTKGFN--IRALKYLVMDEADRILNMDFETEVDKILKVIPKE-----------------RKTYLFSATMTKKVQKLQRAALKEPVKCSVSTKYQTVEKLQQYYVFIPAKFKDSYLVYIL-----------------------NELAGNSFIIFCSTCNNTQRIALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKGKARSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVSQYDVELFQRIEHLIG--KKLPAFPTNEEEVMMLTERVSEAQRFARMEMKETDGK 391
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Sea Lamprey
Match: ddx49 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Source:ZFIN;Acc:ZDB-GENE-031030-3]) HSP 1 Score: 228.024 bits (580), Expect = 2.580e-68 Identity = 150/400 (37.50%), Postives = 223/400 (55.75%), Query Frame = 1
Query: 25 FKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLH---LEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNK--MQIPKQLKQ-FVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIAS----RGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEIN 1194
FK LG+ D L + C+ G ++PT +Q++ IP L G D +G A+TG GKT AF+LPIL L+ + +F L+L PTRELA QI EQF MG GLK ++I+GG + +Q EL H+V+ATPGR+ + S L+ I+ LV+DEADR+L +F D++ I LP K RQT LFSAT + ++++ L P F ++K ++ ++L Q ++LV ++V + + + H+ +KI+ + S IVF TCK + L + L +VALHS + Q +R ++ +FK+ ILIATD+AS RGLD+ V++V+N++ P P Y HRVGRTARAGR+G A+T V + +
Sbjct: 7 FKRLGLDDWLMQQCKQMGISKPTPVQENCIPPILRGQDCMGCAQTGSGKTAAFVLPILQK-LSEDPFGIFCLVLAPTRELAYQIAEQFRVMGKPLGLKDSVIVGGMDSVRQAQELAR-KPHVVIATPGRLADHLRSSNTFS--LKKIQFLVMDEADRLLEQGATDFTKDLQVIL-ALPAK-----------------RQTLLFSATLTDTLQELRNLALTNP--FFWESKEPVRTVEELDQRYILV---ADKVKDAYLV---HIIQKIQDAHDDW--------------SIIVFTNTCKNCQVLNMMLRHFNFPSVALHSMMRQTERFASLSKFKSSMFKILIATDVASSFWARGLDIPTVQVVLNHNTPSLPKTYIHRVGRTARAGRNGVAITIVTQYD 362
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Sea Lamprey
Match: ddx23 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Source:ZFIN;Acc:ZDB-GENE-030131-6215]) HSP 1 Score: 224.557 bits (571), Expect = 1.446e-64 Identity = 145/427 (33.96%), Postives = 221/427 (51.76%), Query Frame = 1
Query: 58 KVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILN--------DWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLP---KKSSITSKKKLAK-------GQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRL------GLAGQLPVHPDVE 1266
+V + CG+ +PT IQ+ AIP+ L DIIG+AETG GKT AFL+P+L D + +A+IL PTRELA QIEE+ I G G+++ +IGG Q L IV+ATPGR++ ++E +L +V+DEADRM+ + FE D++ I + +P +K + K G+ K RQT +F+AT + +E++A L +P V++ + + ++++Q V +M E+ L LL I I+FV K L L KMG +A LH Q QRE A+ K G +IL+ATD+A RG+D+ V +V+NYD+ + + Y HR+GRT RAG+SG +VTF+ + + F +++ + +L HPD +
Sbjct: 333 EVIEKCGYKDPTPIQRQAIPIGLQNRDIIGIAETGSGKTAAFLIPLLVWITTLPKIDRIEDTDQGPYAVILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRL-RMGCKIVIATPGRLIDVLENRYL---VLSRCTYVVLDEADRMIDMGFEPDVQRILEHMPVSNQKPDTDDAEDPDKMTANFESGRHK-YRQTVMFTATMPAAVERLARSYLRRPAVVYIGSVGKPIERVEQRVFIMGESEKRKKLLELLSRGFEPPI-----------------------IIFVNQKKGCDVLAKSLEKMGFNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIHDVSMVLNYDMAKNIEDYTHRIGRTGRAGKSGVSVTFLTKEDAAVFYDLKQAMLGSPVSQCPPELANHPDAQ 731
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Sea Lamprey
Match: ddx27 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Source:ZFIN;Acc:ZDB-GENE-031001-8]) HSP 1 Score: 205.297 bits (521), Expect = 1.767e-57 Identity = 136/395 (34.43%), Postives = 200/395 (50.63%), Query Frame = 1
Query: 19 MNFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILND--WLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINR 1197
+ F ++ + L K G+ +PT IQKS IPV L G DI A TG GKT AF+LP+L + R+ PV L+L PTREL Q+ + ++++L +GG ++ Q L I++ATPGR++ ++ L +IE L++DEADRML FE M+ I + Q RQT LFSAT + ++ +A L P K+FV++ + L+Q ++V PN R G +A+ R V V T + L + ++G LH LSQ QR A+ RFK + +IL+ATD+A+RGLD++ V+ V+N+ +P T Y HRVGRTARAGR+G +++ V E R
Sbjct: 219 ITFPDMNLSRPLLKAISSMGFQQPTPIQKSCIPVGLLGKDICACAATGTGKTAAFMLPVLERLVYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLSQFCNVQTSLAVGGLDIKTQEAAL-RAGPDILIATPGRLIDHLQNCPSFD--LSSIEILILDEADRMLDEYFEEQMKEIIR-----------------QCSHQRQTMLFSATMTDQVQDLAAVSLKHPVKIFVNSNTDVAPYLRQ-----EFVRIRPN-------------REGDREAIVSAL---LTRTFQDH-VMVFTHRLHILLGLLGLRVGE----LHGNLSQTQRLEALRRFKDDQIDILVATDVAARGLDIEGVKTVINFTMPSTIKHYVHRVGRTARAGRAGRSISLVGETER 567
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Sea Lamprey
Match: DDX54 (DEAD-box helicase 54 [Source:HGNC Symbol;Acc:HGNC:20084]) HSP 1 Score: 191.045 bits (484), Expect = 3.834e-55 Identity = 129/390 (33.08%), Postives = 192/390 (49.23%), Query Frame = 1
Query: 22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPV-MFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLD--VDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFV 1182
F+ +G+ + K G G+ PT IQ+ IPV L G D++ +A TG GKT AFL+P+ R AL+L+PTRELA Q + +G GLK+ LI+GG+ M Q L + + I++ TPGR LM + L+ +E +V DEADR+ + F + I + LP RQT LFSAT + + A L P + +D ++ QLK + + ++ L LLR T HE +VFV T + L +++ G S ++S L Q +R++ + +F + +LI TD+A+RG+D +D+ V+NY+ P P + HRVGR ARAGRSGTA + V
Sbjct: 34 GFQSMGLSYPVFKGVMGKGYKVPTPIQRKCIPVILEGRDVVAMARTGSGKTAAFLVPMFERLHARSAQAGARALVLSPTRELALQTSKFTKELGKHTGLKTALILGGDRMEDQFAAL-HENPDIIIGTPGR---LMHVVVEMNLKLQAMEYVVFDEADRLFEMGFAEQLTEIIRRLPDS-----------------RQTLLFSATLPKQLVEFARAGLSDPVLIRLDVDSKLSDQLKLAFMCSRADDKPCVLLHLLR---------------TVVKPHE------QTVVFVATKHHVEYLRELVSQAGMSCAYIYSALDQTERKINVGKFVHKKTMLLIVTDVAARGIDPMLDN---VINYNFPGKPKLFIHRVGRVARAGRSGTAYSLV 378
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Yeast
Match: RRP3 (Protein involved in rRNA processing; required for maturation of the 35S primary transcript of pre-rRNA and for cleavage leading to mature 18S rRNA; homologous to eIF-4a, which is a DEAD box RNA-dependent ATPase with helicase activity [Source:SGD;Acc:S000001107]) HSP 1 Score: 264.233 bits (674), Expect = 9.698e-82 Identity = 165/430 (38.37%), Postives = 240/430 (55.81%), Query Frame = 1
Query: 22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLP---VHPDVELSRQDFTRSANA 1302
+F EL + +L + C+ +++PT IQ AIP AL G DIIGLA+TG GKT AF +PILN + ++P +A IL PTRELA QI+E F ++GS G++ST I+GG M Q +L HI++ATPGR++ +E +K L ++ LV+DEADR+L +EF ++ I K++P + R T LFSAT +S I+K+ L P K V NK Q L Q ++V+ + L LL + K + I+F T + L N + SA ALH L+QNQR ++D FK G+ +IL+ATD+A+RGLD+ V +VVNYD+P Y HRVGRTARAGRSG +++ V++ + + + +E+ LG +LP V ++ L+ +D AN
Sbjct: 82 SFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQEPY-YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMR-KPHIIIATPGRLMDHLENTKGFS--LRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQE----------------RTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIGK-----------------------TMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVLG--KKLPKESVDKNIILTLRDSVDKANG 466
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Yeast
Match: DBP8 (ATPase, putative RNA helicase of the DEAD-box family; component of 90S preribosome complex involved in production of 18S rRNA and assembly of 40S small ribosomal subunit; ATPase activity stimulated by association with Esf2p [Source:SGD;Acc:S000001212]) HSP 1 Score: 226.868 bits (577), Expect = 1.969e-68 Identity = 157/443 (35.44%), Postives = 230/443 (51.92%), Query Frame = 1
Query: 22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPV-MFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVS-LMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWK---PTKVF----VDNKMQIPKQLK-QFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLG--LAGQLPVHPDVELSRQDFTRSANAIKEA 1314
+FK LG+ L + + +PT IQK+ IP L G D IG A+TG GKT AF P+L W E P MF ++LTPTRELA QI EQF A+GS ++ ++I+GGE + QQ +L H ++ATPGR+ +M L + LV+DEAD +L F + LP K RQT LF+AT + ++ + + K P + VDN + IP LK +++LV ++V+ L+ LL ++E++ +AI+FV + L L ++ +LHSQ+ Q +R ++ RF+ A ILIATD+ASRGLD+ V LVVNYD+P PD + HR GRTARAGR G A++FV + + + +E R+ + VH D + R+ T+ A +E+
Sbjct: 3 DFKSLGLSKWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPMLTKW--SEDPSGMFGVVLTPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIVQQALDL-QRKPHFIIATPGRLAHHIMSSGDDTVGGLMRAKYLVLDEADILLTSTFADHLATCISALPPKDK---------------RQTLLFTATITDQVKSLQNAPVQKGKPPLFAYQVESVDN-VAIPSTLKIEYILVPEHVKEA-YLYQLLTCE-----------------EYENK----TAIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQERTNSLHRFRANAARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAISFVTQRDVSRIQAIEDRINKKMTETNKVH-DTAVIRKALTKVTKAKRES 403
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Yeast
Match: DRS1 (Nucleolar DEAD-box protein required for ribosome assembly and function; including synthesis of 60S ribosomal subunits; constituent of 66S pre-ribosomal particles [Source:SGD;Acc:S000003931]) HSP 1 Score: 219.935 bits (559), Expect = 4.197e-63 Identity = 146/407 (35.87%), Postives = 216/407 (53.07%), Query Frame = 1
Query: 22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFA----LILTPTRELAAQIEE------QFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQ-FVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFI 1209
NF L + + K G+ +P+ IQ + IP+AL G DII A TG GKT AF++PI+ L KP A ++L PTRELA Q+ + +F++ G FGL +GG + QQ L + IV+ATPGR + + S A ++++E LV+DEADRML F+ ++ I +LP RQ LFSAT +S I+ + L KP ++ +D + +L Q FV + + P L F+L +K+ P G + + +VFV + L I + +G S LH L+Q QR ++++FK E +LI TD+ASRGLD+ + +V+NYD+P++ + Y HRVGRTARAGR G +VTFV E ++D+ I
Sbjct: 232 NFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLY--KPAKIASTRVIVLLPTRELAIQVADVGKQIARFVS-GITFGL----AVGGLNLRQQEQMLKSR-PDIVIATPGRFIDHIRNS--ASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSN-----------------RQNLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALL----FNLIRKLDPTGQKRI---------------VVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRSI 592
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Yeast
Match: DBP3 (RNA-Dependent ATPase, member of DExD/H-box family; involved in cleavage of site A3 within the ITS1 spacer during rRNA processing; not essential for growth, but deletion causes severe slow-growth phenotype [Source:SGD;Acc:S000003046]) HSP 1 Score: 204.142 bits (518), Expect = 6.075e-59 Identity = 137/399 (34.34%), Postives = 215/399 (53.88%), Query Frame = 1
Query: 79 WNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPV-MFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIP--KQLKQFVLVMQYVERVPNLFALLR-FHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHPDV 1263
+ +PT IQ A P L+G D++G+AETG GKT AF +P ++ +N +K + L+++PTRELA+QI + I + + G++ + GG +Q +L S +VVATPGR++ L+++ L + LV+DEADRML FE D++ I + + SK RQT +F+AT+ + ++A + P KV + N Q+ K++ Q V V+ + L LL+ +H P N+ V ++F K+ +E L G + A+H LSQ QR A++ FK+G++N+L+ATD+A+RGLD+ +V+ V+N P T + Y HR+GRT RAG++GTA T E + G+ L A Q PV D+
Sbjct: 132 FPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHLMNDQKKRGIQVLVISPTRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQLKK--SQVVVATPGRLLDLLQEGSVD---LSQVNYLVLDEADRMLEKGFEEDIKNIIR-----ETDASK-----------RQTLMFTATWPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLLELLKKYHSG----PKKNEKV---------------LIFALYKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEQEKHLAGGLVNVLNGANQ-PVPEDL 489
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Yeast
Match: DBP2 (ATP-dependent RNA helicase of the DEAD-box protein family; has strong preference for dsRNA; interacts with YRA1; required for assembly of Yra1p, Nab2p and Mex67p onto mRNA and formation of nuclear mRNP; involved in mRNA decay and rRNA processing; may be involved in suppression of transcription from cryptic initiation sites [Source:SGD;Acc:S000005056]) HSP 1 Score: 199.519 bits (506), Expect = 4.378e-57 Identity = 128/398 (32.16%), Postives = 209/398 (52.51%), Query Frame = 1
Query: 25 FKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVM------FALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDN-KMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINR 1197
F E G D + + G+++PT IQ P+AL+G D++G+A TG GKT ++ LP + +N +P++ L+L PTRELA QI+ + G +++T + GG SQQ+ +L S IV+ATPGR++ ++E K L+ + LV+DEADRML + FE + I QI+ RQT ++SAT+ ++++A L P +V V + ++ + Q V V+ E+ L L ET +++ ++F +T + + YL + G A+A+H Q +R+ + F+ G + I++ATD+A+RG+DV + V+NYD+P + Y HR+GRT RAG +GTA++F E N+
Sbjct: 115 FDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVH-IN-AQPLLAPGDGPIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDLSR-GSEIVIATPGRLIDMLEIGKTN---LKRVTYLVLDEADRMLDMGFEPQIRKIVD-----------------QIRPDRQTLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKYL-----------------ETASQDNE---YKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNK 469
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Nematostella
Match: EDO33593 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SRU4]) HSP 1 Score: 300.442 bits (768), Expect = 6.395e-96 Identity = 182/442 (41.18%), Postives = 259/442 (58.60%), Query Frame = 1
Query: 16 KMNFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLF--ALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHPDVELSRQDFT-RSANAIKEARKEQRE 1332
K FK LG+ D LC+ C+ GW P+ IQ+ AIPVAL G D+IGLAETG GKTGAF LPIL L+ + +FALILTPTRELA QI EQ A+GS G+K +I+GG +M Q L HI++ATPGR++ +E +K L T++ LV+DEADR+L+++FE +++ + KV+PK+ R+T LFSAT + ++K+ L P KV V K Q ++L+Q L +P+ F L + L ++ A +S +VF TC + + + L +G AV LH Q+SQ++R A+++FK+ +IL+ATD+ASRGLD+ HV +V+N+D+P Y HRVGRTARAGRSG +VTFV + + + + +E +A +LP +P VE R A + AR E RE
Sbjct: 13 KTTFKSLGVVDALCEACKQLGWKTPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILQALLDNPQR-LFALILTPTRELAFQISEQCEALGSGIGVKCAVIVGGIDMMSQALMLAK-KPHIIIATPGRLIDHLENTKGFS--LRTLKYLVMDEADRILNMDFEKEVDKLLKVIPKE-----------------RRTFLFSATMTKKVQKLQRASLQAPVKVEVATKYQTVEKLQQSYLF------IPSKFKDCYLVYVL-------------------NELAGNSFMVFCGTCNNVQRVTLMLRNLGLDAVPLHGQMSQSKRLGALNKFKSKSRSILVATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGRSVTFVTQYDVELYQRIEHL--IAKKLPQYPTVEEEVMLLMERVTEAQRYARMELRE 406
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Nematostella
Match: EDO43011 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RZV2]) HSP 1 Score: 243.047 bits (619), Expect = 5.576e-74 Identity = 155/405 (38.27%), Postives = 219/405 (54.07%), Query Frame = 1
Query: 22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFS---SHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRL 1227
+F LG+ L C G +PT+IQ + +P L G D IG A+TG GKT AF LPIL + + FA++LTPTRELA QI +QF +G GLK +I+GG +M +Q L N H+V+ATPGR+ ++ + L+ I+ LV+DEADR+L F D++ I +P+K RQT LFSAT + ++K++G +P V + + +L Q L+ R L LLR + NQ+V IVF TCK + L +K+G + V LHS LSQ +R A+ RFK+G IL+ATD+ASRGLD+ V LVVN ++P P Y HRVGRTARAGR G A++ V + + D+ +E+++
Sbjct: 8 SFAGLGLNKWLVSQCVAMGIKKPTEIQLNCVPPILQGRDCIGCAKTGSGKTAAFALPILQKLCDDPYGI-FAVVLTPTRELAFQIADQFKVLGRPIGLKEAVIVGGLDMMKQALSLAN-KPHVVIATPGRLADHIKSTDTLN--LKKIQFLVLDEADRLLDPSFGDDLKVIFDAVPEK-----------------RQTLLFSATLTDTMGELQKMSG---SQPFSYEVQSDIATVAELDQRYLLTPAHVRDCYLVHLLREN-------DDNQSV---------------IVFTHTCKNCQVLVSMFHKLGLTCVGLHSLLSQGERLAALARFKSGTIKILVATDVASRGLDIPQVELVVNSNIPADPKDYIHRVGRTARAGRGGMAISMVTQYDIDRVKKIEEKI 366
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Nematostella
Match: EDO43602 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RYA5]) HSP 1 Score: 224.172 bits (570), Expect = 5.256e-64 Identity = 144/436 (33.03%), Postives = 223/436 (51.15%), Query Frame = 1
Query: 25 FKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWL---------NREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLP-------KKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRL------GLAGQLPVHPDVE 1266
+KE I D + ++ G+ +PT IQ+ AIP+ L DIIG+AETG GKT AF +P+L W+ N +ALIL PTRELA QIEE+ + G G+++ +IGG Q +L IV+ATPGR++ ++E +L +V+DEADRM+ + FE +++ I + LP + S + L RQT +F+AT +E++A L +P V++ + + ++++Q V ++ ++ L LL L I I+FV K L L KMG A LH +Q QRE A+ K G +IL+ATD+A RG+D+ V V+NYD+ +T + Y HR+GRT RAG++G AV+F+ + + F +++ L +L HP+ +
Sbjct: 352 WKEAQIPDSILEIVDKLGYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFAIPLLV-WIMGLPKIERDNDADQGPYALILAPTRELAQQIEEEILKFGRPLGIRTVSVIGGLSREDQGFQL-RLGVEIVIATPGRLIDVLENRYL---VLNRCSYIVMDEADRMIDMGFEPEVQKILEHLPVSNVKPDSEDSEDPEHLLTHMGKDKYRQTVMFTATMPPQVERLAKNYLRRPAVVYIGSVGKPVERVEQRVYLVNEQQKRKKLLELLNKDLEPPI-----------------------IIFVNQKKGADVLAKSLEKMGFRATTLHGGRNQEQREFALSSLKGGSKDILVATDVAGRGIDIKDVSHVINYDMAKTIEDYTHRIGRTGRAGKTGIAVSFLTQSDSGVFYDLKQLLLSSPVSSCPSELANHPEAQ 759
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Nematostella
Match: PL10 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SM49]) HSP 1 Score: 196.823 bits (499), Expect = 9.577e-55 Identity = 129/388 (33.25%), Postives = 198/388 (51.03%), Query Frame = 1
Query: 76 GWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILN-------------DWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRD 1200
G+ +PT +QK AIP+ D++ A+TG GKT AFL+PIL+ R + L+L PTRELA QI ++ + ++ GG ++ Q+ EL + + H++VATPGR+V +M++ + L++I LV+DEADRML + FE P+ I + + K IRQT +FSATF I+ +A L + V + + Q V+ + ++ L LL G Q +T +VFV T K LE++L K G ++H SQ +RE A+ F+ G+ IL+AT +A+RGLD+ +V+ V+N+DLP + Y HR+GRT R G +G A +F N N++
Sbjct: 211 GYKKPTPVQKYAIPIVKGKRDLMACAQTGSGKTAAFLIPILSRIYMEGPPAPPDIKHAGRRRQYPICLVLAPTRELAVQIFDEARKFSYRSLCRPCVVYGGADIGSQLREL-DRNCHLLVATPGRLVDMMDRGRVG---LDSIRFLVLDEADRMLDMGFE----------PQIRRIVDQDSMPK---TGIRQTLMFSATFPKEIQMLARDFLENYIFLAVGKVGSTSENITQKVVWVDEFDKRSFLLDLLN--------ASGPQQLT--------------LVFVETKKGADALEMFLAKDGYYCTSIHGDRSQREREEALRTFRCGDTPILVATAVAARGLDIPNVKHVINFDLPTDIEEYVHRIGRTGRVGHTGLATSFFNHKNKN 559
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Nematostella
Match: EDO42894 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S034]) HSP 1 Score: 195.667 bits (496), Expect = 1.112e-53 Identity = 146/451 (32.37%), Postives = 220/451 (48.78%), Query Frame = 1
Query: 31 ELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDW-----LNREK-PVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIR---QTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHPDVELSRQDFTRSANAIKEARKEQREEELKLNGF 1356
+ G++ + V + + +PT IQ AIPV ++G D+IG+A+TG GKT AFL+P+ L RE+ P+ A+++TPTRELA QI + L+ + GG +S+Q+ EL + I+V TPGR++ ++ + + LV+DEADRM + FE + I I CIR QT +FSATF +E +A +L KP ++ V + + ++Q V+V++ ++ + + ++ Q S +VFV L L K ++LH + Q R+ I FK G ++IAT +A+RGLDV H+ LVVNYD P + Y HRVGRT RAG GTA TF+ I + K L +A + PV DV AN E RK + + +K +GF
Sbjct: 141 QTGVQLKILDVLKKNSYEKPTPIQAQAIPVIMSGRDMIGIAKTGSGKTLAFLIPMFRHIKDQPPLEREEGPI--AIVMTPTRELAIQIHRECKKFCKPNNLRCVCVYGGTGISEQIAEL-KRGAEIIVCTPGRMIDMLTANNGRVTNCQRCTYLVLDEADRMFDMGFEPQVMRI--------------------IDCIRPDRQTVMFSATFPRQMEALARKILDKPIEIQVGGRSVVCSDVEQNVVVIEEDDKF-------------------LKLLELLGLYQEQ---GSVLVFVEKQDSADSLFKDLLKRSYPCLSLHGGMDQFDRDSTIADFKNGVTKLMIATSVAARGLDVKHLNLVVNYDCPNHYEDYVHRVGRTGRAGNKGTAYTFLTPEQGRFAIDVIKALEMA-ENPVPEDVR-------NLANTYIETRKAEGKNIVKNSGF 538
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Medaka
Match: ddx47 (DEAD-box helicase 47 [Source:NCBI gene;Acc:101159675]) HSP 1 Score: 298.13 bits (762), Expect = 5.114e-94 Identity = 178/452 (39.38%), Postives = 258/452 (57.08%), Query Frame = 1
Query: 22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHPDVELSRQDFT-RSANAIKEAR---KEQREEELKLNGFDMD 1365
FK+LG+ D LC+ C GW PT IQ AIPVAL G D+IGLAETG GKTGAF LPIL L + + L+LTPTRELA QI EQF A+GS G+K +I+GG +M Q L HIV+ATPGR++ ME +K L ++ LV+DEADR+L+++FE++++ I KV+P++ R+T LFSAT + ++K+ L P K V K +L+Q+ + + + L ++L ++ A +S ++F +TC + + + L +G +A+ LH Q+SQN+R A+++FK+ ++L+ATD+ASRGLD+ HV V+NYD+P Y HRVGRTARAGRSG ++TFV + + + F +E +G +LP P E R + A + AR KEQ E+ + G D D
Sbjct: 40 TFKDLGVTDVLCEACDQLGWKSPTKIQVEAIPVALQGKDVIGLAETGSGKTGAFALPILQSLLASPQR-LHTLVLTPTRELAFQISEQFEALGSSIGVKCAVIVGGIDMMSQSLVLAK-KPHIVIATPGRLIDHMENTKGFS--LRALKFLVMDEADRILNMDFETEVDKILKVIPRE-----------------RRTFLFSATMTKKVQKLQRAALKDPVKCAVSTKYSTVDKLQQYYVFIPAKYKDCYLVSIL-----------------------NELAGNSFMIFCSTCNNAQRVALMLRNLGITAIPLHGQMSQNKRLGALNKFKSKSRSVLLATDVASRGLDIPHVDCVINYDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIESLIG--KKLPAFPTQEEEVMMLVERVSEAQRFARVEMKEQGEKRKRPRGRDGD 445
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Medaka
Match: ddx49 (DEAD-box helicase 49 [Source:NCBI gene;Acc:101169189]) HSP 1 Score: 234.958 bits (598), Expect = 3.770e-70 Identity = 155/451 (34.37%), Postives = 236/451 (52.33%), Query Frame = 1
Query: 22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLH---LEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHPDVELSRQDFTRSANAIKEARKEQREEELKLNGFDMD 1365
+F LG+ D L K C+ G ++PT +Q++ +P L G D +G A+TG GKT AF+LP+L L+ + +F L+LTPTRELA QI EQF +G GLK +++GG +M Q EL H+VVATPGR+ + S + I+ L++DEADR+L +F D+E I LP K RQT LFSAT + ++++ + KP ++ + ++L Q ++ E+V + + + HL + T T KH+ S I+F TCK + L + L + ++LHS + Q QR + +FK ILIATD+A+RGLD+ V++V+N++ P P Y HRVGRTARAGR+G ++T V + + +E++ +L +P E N + RE E++L D D
Sbjct: 3 DFHSLGLSDWLVKQCKQLGIDKPTPVQENCVPAILEGRDCLGCAKTGSGKTAAFVLPVLQK-LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIVVGGMDMVTQALELSK-QPHVVVATPGRLADHVRSSNTFS--MRKIKFLILDEADRLLEQGCTDFTKDLEEILGTLPAK-----------------RQTLLFSATLTDTLQELKSIAMNKPFFWESTSETRTVEELDQRYILTP--EKVKDAYLV---HLIQ----------TFTDKHDDW----SIIIFTNTCKNCQILTMMLREFNFPTISLHSMMKQRQRFANLAKFKASVYKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQYDIHLVHSIEEQ--TKTKLTEYPVEEKEVHKILTQVNVTR------RECEIRLESTDFD 405
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Medaka
Match: ddx23 (DEAD-box helicase 23 [Source:NCBI gene;Acc:101157453]) HSP 1 Score: 228.409 bits (581), Expect = 5.821e-65 Identity = 146/443 (32.96%), Postives = 227/443 (51.24%), Query Frame = 1
Query: 22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILN--------DWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKK--------------KLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRL------GLAGQLPVHPDVE 1266
N+KE + + +V CG+ EPT IQ+ AIP+ L DIIG+AETG GKT AFL+P+L D + +A+IL PTRELA QIEE+ I G G+++ +IGG Q +L IV+ATPGR++ ++E +L +V+DEADRM+ + FE D++ I + +P +T++K G+ K RQT +F+AT +E++A L + V++ + + ++++Q V++M E+ + +L I I+FV K L L KMG +A LH Q QRE A+ K G +IL+ATD+A RG+D+ V +V+NYD+ + + Y HR+GRT RAG+SG A+TF+ + + F +++ + +L HPD +
Sbjct: 374 NWKEYALPAHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEDSDQGPYAVILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFKL-RMGCEIVIATPGRLIDVLENRYL---VLGRCTYVVLDEADRMIDMGFEPDVQKILEYIP----VTNQKPDTDEAEDPEKMTMNFESGKHK-YRQTVMFTATMPPAVERLARSYLRRAAVVYIGSAGKPHERVEQKVMLMSEGEKRKKMLEVLASGFEPPI-----------------------IIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIHDVSMVINYDMAKNIEDYIHRIGRTGRAGKSGVAMTFLTKEDSAVFYDLKQAILESPVSNCPPELANHPDAQ 784
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Medaka
Match: ddx23 (DEAD-box helicase 23 [Source:NCBI gene;Acc:101157453]) HSP 1 Score: 227.639 bits (579), Expect = 8.487e-65 Identity = 147/443 (33.18%), Postives = 228/443 (51.47%), Query Frame = 1
Query: 22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILN--------DWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKK--------------KLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRL------GLAGQLPVHPDVE 1266
N+KE + + +V CG+ EPT IQ+ AIP+ L DIIG+AETG GKT AFL+P+L D + +A+IL PTRELA QIEE+ I G G+++ +IGG Q +L IV+ATPGR++ ++E +L +V+DEADRM+ + FE D++ I + +P +T++K G+ K RQT +F+AT +E++A L + V++ + + ++++Q V++M E+ + +L A P I+FV K L L KMG +A LH Q QRE A+ K G +IL+ATD+A RG+D+ V +V+NYD+ + + Y HR+GRT RAG+SG A+TF+ + + F +++ + +L HPD +
Sbjct: 349 NWKEYALPAHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEDSDQGPYAVILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFKL-RMGCEIVIATPGRLIDVLENRYL---VLGRCTYVVLDEADRMIDMGFEPDVQKILEYIP----VTNQKPDTDEAEDPEKMTMNFESGKHK-YRQTVMFTATMPPAVERLARSYLRRAAVVYIGSAGKPHERVEQKVMLMSEGEKRKKMLEVL----ASGFEP-------------------PIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIHDVSMVINYDMAKNIEDYIHRIGRTGRAGKSGVAMTFLTKEDSAVFYDLKQAILESPVSNCPPELANHPDAQ 759
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Medaka
Match: ddx27 (DEAD-box helicase 27 [Source:NCBI gene;Acc:101158015]) HSP 1 Score: 217.624 bits (553), Expect = 2.304e-61 Identity = 149/448 (33.26%), Postives = 222/448 (49.55%), Query Frame = 1
Query: 16 KMNFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILND--WLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINR---DQFIGMEKRLGLAGQLPVHPDVELSRQDFT----RSANAIKEARKEQRE 1332
+++F ++ + + K G+ +PT IQK+ +PV+L G D+ A TG GKT AF+LP+L + R V L+L PTREL Q+ + + + L +GG ++ Q L +++ATPGR++ + + L IE L++DEADRML FE M+ I ++ RQT LFSAT + ++ +A L +P ++FV++ + L+Q F +R H R G +AV + + ++F T KQ L I L MG LH +LSQNQR + RFK + +IL+ATD+A+RGLD+D V+ V+N+ +P T Y HRVGRTARAGRSG +V+ V E R + + K A LP PDV L +D + A+ KE+RE
Sbjct: 172 QLSFDDMNLSRPILKAITALGFKQPTPIQKACVPVSLLGRDLCACAATGTGKTAAFMLPVLERLIYKPRTSQVTRVLVLVPTRELGIQVHSVARQLAQFTSITTCLAVGGLDLKSQEAAL-RAGPDVLIATPGRLIDHLHNTPNFE--LSHIEILILDEADRMLDEYFEEQMKEIIRLCSYN-----------------RQTMLFSATMTEEVKDLAAVSLKQPVRIFVNSNTDVAPFLRQ-------------EFIRIRPH-----REGDREAVVAALLTRTFQ--DHVMLFTQTRKQAHRLHILLGLMGLKVGELHGELSQNQRLENLRRFKDDQIDILVATDVAARGLDIDGVKTVINFTMPSTVKHYVHRVGRTARAGRSGRSVSLVGESERRILKEVVKSAKNSVKARVLP--PDVVLKFRDLICKLEKDVEAVMRLEKEERE 577
BLAST of ATP-dependent rRNA helicase RRP3 vs. Planmine SMEST
Match: SMESG000030761.1 (SMESG000030761.1) HSP 1 Score: 976.082 bits (2522), Expect = 0.000e+0 Identity = 471/471 (100.00%), Postives = 471/471 (100.00%), Query Frame = 1
Query: 19 MNFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHPDVELSRQDFTRSANAIKEARKEQREEELKLNGFDMDFSHVNSNFSTKRAKLSAKEKKN 1431
MNFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHPDVELSRQDFTRSANAIKEARKEQREEELKLNGFDMDFSHVNSNFSTKRAKLSAKEKKN
Sbjct: 1 MNFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQLPVHPDVELSRQDFTRSANAIKEARKEQREEELKLNGFDMDFSHVNSNFSTKRAKLSAKEKKN 471
BLAST of ATP-dependent rRNA helicase RRP3 vs. Planmine SMEST
Match: SMESG000051946.1 (SMESG000051946.1) HSP 1 Score: 286.574 bits (732), Expect = 3.241e-90 Identity = 159/405 (39.26%), Postives = 241/405 (59.51%), Query Frame = 1
Query: 19 MNFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARD-MLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGG-NQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRL 1227
M+FKELG+ D LC+ + W PT+IQK AIP AL G DIIGLA+TG GKTGAF +PIL + + KP FAL+ TPTRELA QI+ +F +G G+K +IGG Q T++ N HI++ATPGR + + +K + L+ ++ LV+DEADRML +F+ D+ I +LP+ R+T LFSAT + + K+ L P KV VD K +LK+F+L+ Y ++ +L LL+ K +P + A + ++A S IVFV T + L +L K+G +A ++S +SQ QR I + K + +I++ATD+A+RG+D+ +V +V+ YD+P++ Y HR GRTARAG+ G ++T VN+ N Q++ +++++
Sbjct: 1 MSFKELGVNDTLCEAIERIKWKIPTEIQKKAIPPALEGKDIIGLAKTGSGKTGAFTIPILQELMKDPKP-FFALVFTPTRELAIQIQTEFNGLGKGIGVKCATLIGGLCEKTQATQILN-KPHIIIATPGRFLKHVATTKGFNEQTLKNLKFLVMDEADRMLSSQFDRDLNKILYILPR-----------------TRRTFLFSATNTDKVSKLQRASLIDPVKVSVDEKYAESSELKEFMLLCPYEQQSAHLVWLLKQLTCKSAKPTEFDIAAFNYLDSDGKKATKSIIVFVQTRMMSNLLAYFLQKLGLNAQPINSDMSQEQRTATIHKMKMRKVDIMVATDVAARGIDIPNVDVVIQYDIPESAKTYTHRAGRTARAGKRGVSITMVNQYNTPQYMEIQEKM 386
BLAST of ATP-dependent rRNA helicase RRP3 vs. Planmine SMEST
Match: SMESG000068237.1 (SMESG000068237.1) HSP 1 Score: 224.942 bits (572), Expect = 6.668e-64 Identity = 144/445 (32.36%), Postives = 231/445 (51.91%), Query Frame = 1
Query: 25 FKELGIRDDLCKVC-QGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVM---------FALILTPTRELAAQIEEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKS------SITSKKKLAKG--QIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLG------LAGQLPVHPDVELSRQDFT 1287
++E G+ D L V + EPT IQ+ AIP+ L DIIG+AETG GKT AFL+P+L+ W+ + + +A+IL PTR+LA QI E+ + G G+K+ IIGG +Q+ +L + IV+ATPGR+V ++E +L +++DE DRM+ + FE+D+ I LP+ + +KL + + RQT +F+AT +E++A L +P V++ + + ++ KQ + ++ ++ L ++ S+ + I+FV K L L KM A++ H Q RE A+ K+ E +IL+AT++A RG+D+ V LV+NYD+P+T D Y HRVGRT RAG+ G A++FV + + F +++ L + +L HPD + FT
Sbjct: 364 WEEAGLSDKLLDVIINKAKYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLS-WIEKLPRLQKMEQNELGPYAIILVPTRDLAIQILEETMKFGQPLGIKAVTIIGGNSREEQVFQL-RLGAEIVIATPGRLVDVLENRYI---VLNQCTYVIMDEVDRMIDMNFEADVRKILSYLPEATEKPDTDDAEDTEKLLQNFHTTQKYRQTVMFTATMQPSVERLARTFLRRPATVYIGSIGKPTERTKQVIYMLTENQKRDKLREIM-----------------------SRNFVPPIIIFVNQKKGADVLAKGLEKMNLKAISFHGGKGQEHREYAMAALKSKEKDILVATNLAGRGIDIKDVSLVLNYDMPKTIDEYIHRVGRTGRAGKEGLAISFVTKDDSPLFYDLKELLKESPLSEIPSELLSHPDAQQKYGTFT 780
BLAST of ATP-dependent rRNA helicase RRP3 vs. Planmine SMEST
Match: SMESG000018018.1 (SMESG000018018.1) HSP 1 Score: 215.312 bits (547), Expect = 8.015e-63 Identity = 139/444 (31.31%), Postives = 240/444 (54.05%), Query Frame = 1
Query: 25 FKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNREKPVMFALILTPTRELAAQIEEQFIAMGSEFGLKSTLII-GGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDM-LETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVT--ETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQ-LPVH-----------PDVELSRQDFTRSANAIK 1308
FK++G+ +D+ K+ + +PT++Q+ IP+ L G D+I A+TG GKT AFL+PI+ + + KP + +ILTPTRELA QI EQ + L T++I GG+++ +Q +L + HI++ATPGR+ L+ +++ + L+ + LV+DEADR+L F D++ I L K R+T LF+AT + + V + T + N ++P + + + + + L ++++ K++ N+A+ K Q S ++F CK + L + L V LHS +++ +RE ++ +FK+ I++ATD+ASRGLD+ V LV+N+++P P Y HRVGRTAR+GR+GT++T N ++ +++ +G + P+ ++ L+R+D R +AIK
Sbjct: 2 FKKIGVTEDVIKLLENKKIIKPTEVQEHCIPLVLQGKDVIACAKTGSGKTAAFLIPIIQNLIVDIKP-YYCVILTPTRELAHQIGEQAKGLLVSQNLAKTIVITGGKDLIKQGADLTS-SYHILIATPGRLAHLIRDNEEREEWSLKRCKYLVLDEADRLLEDNFGEDLKVIFDSLSTK-----------------RKTLLFTATLTGPVLDVVKII----TDTAIANNREVPVIWRASGMTDE--SKATTVDTLKQYYILSKMQ--NNEAIMFYIVDKFLQQNPSSLIMIFTNKCKWCQMLHMMLKAFKFKTVMLHSVMTEKEREESLMKFKSSTVRIMVATDLASRGLDIPRVDLVINHNVPINPKSYVHRVGRTARSGRAGTSITMANLFEKESLKKIQQYIGCEMEKYPIETTDLQKIEKTWAEIALARRDAERKLDAIK 418
BLAST of ATP-dependent rRNA helicase RRP3 vs. Planmine SMEST
Match: SMESG000013025.1 (SMESG000013025.1) HSP 1 Score: 201.83 bits (512), Expect = 1.496e-55 Identity = 139/418 (33.25%), Postives = 214/418 (51.20%), Query Frame = 1
Query: 22 NFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGKTGAFLLPILNDWLNRE-KPVMF-------ALILTPTRELAAQI--EEQFIAMGSEFGLKSTLIIGGEEMSQQMTELGNWDSHIVVATPGRVVSLMEKSKQARDMLETIEKLVIDEADRMLHLEFESDMEAISKVLPKKSSITSKKKLAKGQIKCIRQTQLFSATFSSHIEKVAGYLLWKPTKVFVDNKMQIPKQLKQFVLVMQYVERVPNLFALLRFHLAKKIRPGGNQAVTETTKHESQRALSSAIVFVTTCKQTKPLEIYLNKMGASAVALHSQLSQNQRELAIDRFKTGEANILIATDIASRGLDVDHVRLVVNYDLPQTPDWYKHRVGRTARAGRSGTAVTFVNEINRDQFIGMEKRLGLAGQL 1245
NF EL + + + PT IQK+AIP L DI+ A+TG GKT AFL+PI+N ++++ P + LIL PTRELA QI E Q ++ ++ ++S ++ GG + Q+ E+ H++VATPGR+V +EK+K + LE + +V+DEADRML + FE P+ I + + G RQT +FSATF I+K+A L+ + V +KQ ++ M VE++ L + + TT + ++FV T K L +L G ++H +Q +RE A++ F+ G+ IL+AT +A+RGLD+ +V+ V+NYDLP + Y HR+GRT R G G A +F + N + I + L A Q+
Sbjct: 186 NFDELKLNPIIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLISQDLSPQRYTKTAYPKCLILAPTRELAIQILSESQKFSLNTQ--MRSCVVYGGADTHSQIREV-QIGCHLLVATPGRLVDFIEKNKIS---LEMCKYIVLDEADRMLDMGFE----------PQIRKIIEESNMPSG---INRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQEIIYMTDVEKLNYL-----------------KNIFNTTAPNTL-----ILIFVETKKGADSLARFLLSKGYPVSSIHGDRNQGEREHALNMFRNGQCPILVATAVAARGLDIPNVKHVINYDLPSDIEEYVHRIGRTGRLGNHGRATSFYVDKNNNIAIDLVDLLKEANQI 562 The following BLAST results are available for this feature:
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 5
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 5
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of ATP-dependent rRNA helicase RRP3 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of ATP-dependent rRNA helicase RRP3 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 5
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 5
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 5
BLAST of ATP-dependent rRNA helicase RRP3 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of ATP-dependent rRNA helicase RRP3 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30008605 ID=SMED30008605|Name=ATP-dependent rRNA helicase RRP3|organism=Schmidtea mediterranea sexual|type=transcript|length=1809bpback to top protein sequence of SMED30008605-orf-1 >SMED30008605-orf-1 ID=SMED30008605-orf-1|Name=SMED30008605-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=472bp MNFKELGIRDDLCKVCQGCGWNEPTDIQKSAIPVALTGVDIIGLAETGGGback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
|
