SMED30008510

Overview
NameSMED30008510
Smed IDSMED30008510
Length (bp)4978
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30008510 (SMED30008510) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30008510 (SMED30008510) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30008510 (SMED30008510) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30008510 (SMED30008510) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30008510

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
whole organismSMED30008510h1SMcG0021083 Contig13817uc_Smed_v2PMID:27612384
Roberts-Galbraith et al., 2016		whole organism asexual adult colorimetric in situ hybridization evidence
whole organismSMED30008510h1SMcG0021083 Contig13817newmark_estsPMID:27612384
Roberts-Galbraith et al., 2016		whole organism asexual adult colorimetric in situ hybridization evidence
Note: Hover over icons to view figure legend
Alignments
SMED30008510 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.001824:52324..57301 +24890
Homology
[Close]
BLAST of SMED30008510 vs. Planmine SMEST
Match: SMESG000016753.1 (SMESG000016753.1)

HSP 1 Score: 416.387 bits (1069), Expect = 1.377e-134
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = -1 
Query: 2768 YGYVPQPIIQHHYQHDFNKDCNIQRHFNQELPLNTLDFPVRHPRTRPGMPIRTPQFPNNGNVVNSHYFPVLSLQNFNNPYLIRSPFQHPKILTEKPINSIMDKTHNSIPNFNYRKSEKINKENLKFSNKHTPHKLVLNNQFFIATSFVNIKVCDKDSDDLIRHKMKYSGFSEKQIQSHLSSKRSNWDKMVNEIRMNCKNRKCY 3376
            YGYVPQPIIQHHYQHDFNKDCNIQRHFNQELPLNTLDFPVRHPRTRPGMPIRTPQFPNNGNVVNSHYFPVLSLQNFNNPYLIRSPFQHPKILTEKPINSIMDKTHNSIPNFNYRKSEKINKENLKFSNKHTPHKLVLNNQFFIATSFVNIKVCDKDSDDLIRHKMKYSGFSEKQIQSHLSSKRSNWDKMVNEIRMNCKNRKCY
Sbjct:   15 YGYVPQPIIQHHYQHDFNKDCNIQRHFNQELPLNTLDFPVRHPRTRPGMPIRTPQFPNNGNVVNSHYFPVLSLQNFNNPYLIRSPFQHPKILTEKPINSIMDKTHNSIPNFNYRKSEKINKENLKFSNKHTPHKLVLNNQFFIATSFVNIKVCDKDSDDLIRHKMKYSGFSEKQIQSHLSSKRSNWDKMVNEIRMNCKNRKCY 217
[Close]
BLAST of SMED30008510 vs. Planmine SMEST
Match: SMESG000072682.1 (SMESG000072682.1)

HSP 1 Score: 153.68 bits (387), Expect = 2.727e-41
Identity = 84/119 (70.59%), Postives = 99/119 (83.19%), Query Frame = 1 
Query: 4039 NLKIAMEQRIREIDSIKNQLFQSRNLIKALKRECQLSNTKRQELEEENRSLNQKL--NRKWKQKVDELKSELATKWINNVLEDYWKKEAQRIKRKYCRRKNLNRAYKKIETYARKQYRK 4389
            N+K+ +EQ+ +EIDSI NQ FQSRNLIKALK E QL+  KR+EL+EENRSLNQKL  NR+W+Q VDELK ELA KW N+VL+DY KKEAQRIK+KY R K LNR YKK+ETYA KQY+K
Sbjct:  366 NMKMTIEQQRQEIDSITNQWFQSRNLIKALKTEFQLAAIKRRELKEENRSLNQKLKLNREWEQNVDELKGELANKWANHVLKDYLKKEAQRIKKKYYRIKRLNREYKKLETYAVKQYQK 484

HSP 2 Score: 36.965 bits (84), Expect = 2.727e-41
Identity = 18/24 (75.00%), Postives = 19/24 (79.17%), Query Frame = 2 
Query: 3917 KKDMYIKPIKIEV*NEDPIPTGCK 3988
            KKD+ IKPIKIEV NED IP  CK
Sbjct:  325 KKDVRIKPIKIEVENEDQIPKECK 348
[Close]
BLAST of SMED30008510 vs. Planmine SMEST
Match: SMESG000072682.1 (SMESG000072682.1)

HSP 1 Score: 146.747 bits (369), Expect = 2.817e-39
Identity = 80/113 (70.80%), Postives = 94/113 (83.19%), Query Frame = 1 
Query: 4039 NLKIAMEQRIREIDSIKNQLFQSRNLIKALKRECQLSNTKRQELEEENRSLNQKL--NRKWKQKVDELKSELATKWINNVLEDYWKKEAQRIKRKYCRRKNLNRAYKKIETYA 4371
            N+K+ +EQ+ +EIDSI NQ FQSRNLIKALK E QL+  KR+EL+EENRSLNQKL  NR+W+Q VDELK ELA KW N+VL+DY KKEAQRIK+KY R K LNR YKK+ETYA
Sbjct:  366 NMKMTIEQQRQEIDSITNQWFQSRNLIKALKTEFQLAAIKRRELKEENRSLNQKLKLNREWEQNVDELKGELANKWANHVLKDYLKKEAQRIKKKYYRIKRLNREYKKLETYA 478

HSP 2 Score: 36.965 bits (84), Expect = 2.817e-39
Identity = 18/24 (75.00%), Postives = 19/24 (79.17%), Query Frame = 2 
Query: 3917 KKDMYIKPIKIEV*NEDPIPTGCK 3988
            KKD+ IKPIKIEV NED IP  CK
Sbjct:  325 KKDVRIKPIKIEVENEDQIPKECK 348
[Close]
BLAST of SMED30008510 vs. Planmine SMEST
Match: SMESG000003311.1 (SMESG000003311.1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.509e-14
Identity = 49/100 (49.00%), Postives = 66/100 (66.00%), Query Frame = 1 
Query: 4096 LFQSRNLIKALKRECQLSNTKRQELEEENRSLNQKLN--RKWKQKVDELKSELATKWINNVLEDYWKKEAQRIKRKYCRRKNLNRAYKKIETYARKQYRK 4389
            + QSR L K LK EC + N K++ LEEEN  L Q++   +  ++KVDEL      KW   V E +WK +A+RI+RKY + K LNRAY+K+E YA KQY+K
Sbjct:  179 VVQSRKLFKTLKEECLILN-KQKNLEEENELLRQQMEVCKGLEEKVDEL----VAKWTRYVQEKHWKVQAKRIQRKYRKTKRLNRAYRKLEGYAMKQYKK 273
[Close]
BLAST of SMED30008510 vs. Planmine SMEST
Match: SMESG000009758.1 (SMESG000009758.1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.884e-13
Identity = 38/71 (53.52%), Postives = 56/71 (78.87%), Query Frame = 1 
Query: 4036 RNLKIAMEQRIREIDSIKNQLFQSRNLIKALKRECQLSNTKRQELEEENRSLNQ--KLNRKWKQKVDELKS 4242
            +N+KIAMEQ+I+EID + NQ FQSRNLIKALKRE  +   +R+E+E+EN+ L Q  ++N+ W++ ++ELK 
Sbjct:  555 KNMKIAMEQQIQEIDCMTNQWFQSRNLIKALKRERDVLKRQRKEVEDENKWLKQNIEVNKGWEEGIEELKP 625

HSP 2 Score: 26.1794 bits (56), Expect = 2.884e-13
Identity = 12/19 (63.16%), Postives = 14/19 (73.68%), Query Frame = 2 
Query: 3932 IKPIKIEV*NEDPIPTGCK 3988
            IKP+K+EV NE PI   CK
Sbjct:  514 IKPLKMEVENEFPISMKCK 532
The following BLAST results are available for this feature:
BLAST of SMED30008510 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008510 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008510 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008510 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008510 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008510 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008510 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008510 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008510 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008510 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008510 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008510 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008510 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008510 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000016753.11.377e-134100.00SMESG000016753.1[more]
SMESG000072682.12.727e-4170.59SMESG000072682.1[more]
SMESG000072682.12.817e-3970.80SMESG000072682.1[more]
SMESG000003311.11.509e-1449.00SMESG000003311.1[more]
SMESG000009758.12.884e-1353.52SMESG000009758.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30008510 ID=SMED30008510|Name=SMED30008510|organism=Schmidtea mediterranea sexual|type=transcript|length=4978bp
TTTTTATATTCATTAAACAAAGAAATTGGTACAATTCCAAATTAGAACAA
AGAAATTTTTTAAATTAAATTTTTTCTAATTTCTATATTGTAAAGAATAA
AGTTCTTTACAAATTTGTTGCTGACAACGTTTCAATTAAATGTGGTCATA
TAGAAAAACTCACCGAAAGATTTGTTTTGCATTTTGACATATGATTTGTT
TAAATTAAGAACTTAAAATTGACATTTTACAGAGAATTTAATTTCATATT
TTGATCTGAAAAATACTTAAGTATTAAAATAATACTTTATTTTTATTACG
TTTTTTCGTAAGATACTTGAGTAATCCGATAGTTTCATAGAGAATTAAAT
TCTGTGCTCATTTTGAAATTTATTTGATAATTCCTTATGTTTAAAATATA
CTTGTAAAATGCCTCACGAGCTCACAACTTACCAGGAAATACAACGAGAG
GAATTTTGAAAACCGGTTTCAAAAATATATGTTTTAATTTACGTTAAAAT
AAAATGGTTTAATGTAATATGTGAAATATTATTCGAACAGAATTGAGTCA
CTTAAAATTTGTAGTTTTTTTAAAAAAATTTATAAATCGGAAAATTATTT
TCTGGCTATTTATAAAAGTAAACGGTAACACCTAAGTGCGTATAGTGGAA
AATTAAAGGGAAAGATGTTTCATCAAAATAACAGAAAAACTAAGAAAACA
TTAAAAAATAAATAAAAACAACCAAAAATAACACCAAAACCATAAACATT
AAACAAATAACTACCAAAAAATGGCATTAAATTTGAGGGAAATGTAAAAT
CAAAAGAATCAAAAATCAAATTAAATTTAAGACTTTTATAAGAAAAATCG
AAATTTAATCAACGACCCAGCTATGACCAGTCAGAAAAGAAATCAGACAC
AGGTACAGCCCAAACTAGATACAATCATCTTTGGCTTGCATCCACCGATT
TGGTACAGCACCGTCGTTGCTTAGAAACAAGTGTCAAATGATCAGATTAA
AACGTGCAACTGAGTTGCGCTCGAAACAATTGTTAGGGGCTAATAAGATA
ATCTTATAACCAATACAATGAGTCTGCTAAGAATTATAATGAAACTCCAT
ACTCTTACAGACAATTTCGCTGACAGTTGGTAACAGAACTTGAGGGAAAT
TTTCGAATAACATTTTCAGCAAAAGAAATGCATCTACTTCCGATAAGCGT
GAATTATTGAACGGAACACTGCACATAATAATGCCAGATCTTTAAAATAA
ATTTAAATATTGCATTGTCTGCTCAAATCGAAATATCCTTTATGGACAAT
AAAAACAACGAAAAACACGTAATTCATATAGGAAACTGTTTTAAAAGATA
CCATACGTTAACTAATTTGTAATCATAATTTGTTTTCATAAGCAAACACA
ATTAACCATAATTTATCCAAAACGATCTGAACGGCAGAAATAAATTCCGT
AAGACGGGGGTATGGATAATCGAATTTAAAAATCGCTCTAAATGAATCAT
ACTGGGTTTAAAAAATCGACGATCTTTTAACGGATGTGGTGAGTATACGT
ATAAAGGAGAGGCGGATAAACAAGTTCATTGTATATGTATTTCACTAATT
GTATTTCTTTTCCATATATTCAAATTTACCTATTTCTTTCTTAAAACTAA
CTTGGACCTCGCTACCAACACACTGATAAAATCAGTGGAGTCGAAAAAGA
AAAGGAAAATTTTGAAAAATAAAATTTGATTGAATTTCAATTATTTGGAA
ATAATTGTTAACTTGAACATCTAATCTCAGGATTAGAAGAAATTTCCAAC
AAATGAGTCATTCAGTGAAAAATTGTGAACACTTCCTTAGATAGAAAGAC
AGTAAAATATTACACAAGTGGATAAAATAAACAAGATGCAGAGAGAGAAA
AATCACTGATACTCCGGACCATGGTTTTTTTTTATCAGTACGATAAAAAA
ACCGAGTTCTAATTAAAAAAATGTTAAATTTTAAAAATATATTAATTAAA
CTTTTAAATTTAAATAAATAACACCAATGTGTTTAAATAACAATATCCTT
AATAATAATAATAATTTAAAAAACGAAAGCTCCGAGAAACTAATTGAACT
AACTAAAACTGACAAATAAATTTGAATTTATTAATATTTAGAATCTCGGT
CAAAAAAACCATGATGCCCAAAACCGTAAAAAAACCATGGTTCGATACTT
CGTGAATTTGTTTTGATTATTCAGCTGAACTATAGCAATAGAATATTGCG
CGAATCATTTTTTATGTTAGGTTTTTCGCCTAATTTAAATATTTGATCAA
GATTTATCTTTAGAGTAACTGTCTATGTTAACGACTGGAAGTAGCAGATT
CTTTTGATTATTGTTGACAAATTTTTACCGTTTTCAAAGCTTTACAGTTT
AGTTCATTGCTCGTGAGTAGATGACTGGAAAATTAGTTTTATTCTCGATA
CCTTCCCATGATTTAAGTATGCATGAAAACAAGATTTAAATAATGTAAAT
TTTGGTATGCTTTACTCTAATTCAATAATCGTTTAGACACTGATCATTTT
TTATTAAAATTTATGAATAAAAATAGAATTCCATAAGTATAAGAAATCCT
TAAATAAAAAAATGAAAACACAATAGTTAGATAAATAAGTAAAGACCAGC
CATCATTATGGTTTCTTTTAAATGTTCAATTTTGGTGAATGTGTTAATAA
ATGACAGCTATTCACTGATTAATTATGAAATACTACACTTTGAACATTTG
CAATTTGTAAATTTTCAGTAGCACTTACGATTTTTACAATTCATTCTAAT
TTCATTAACCATTTTGTCCCAGTTGGATCGTTTACTACTTAAATGAGATT
GAATTTGTTTTTCTGAAAATCCAGAATATTTCATTTTATGACGAATAAGA
TCATCACTATCTTTATCACAGACTTTAATATTTACGAACGAAGTTGCAAT
AAAAAACTGATTGTTTAAAACGAGCTTATGTGGAGTATGTTTATTAGAAA
ACTTTAAATTTTCTTTATTAATCTTCTCACTTTTACGATAGTTGAAATTA
GGAATTGAGTTATGAGTTTTATCCATAATTGAGTTTATAGGTTTCTCTGT
TAAAATCTTTGGATGCTGAAATGGTGATCTTATTAAGTAAGGATTGTTAA
AATTTTGTAAAGATAAAACAGGGAAATAGTGTGAATTAACCACATTTCCA
TTATTAGGAAACTGGGGAGTTCTTATGGGCATTCCCGGTCTTGTTCTTGG
ATGACGTACTGGAAAATCTAATGTATTTAAAGGAAGTTCTTGATTAAAAT
GCCGTTGTATATTACAGTCCTTGTTAAAATCATGTTGGTAATGATGCTGT
ATAATCGGCTGTGGTACATAACCATAATTATTTGGGAAGAAATTTATCTT
ATTAATGTTGAAATTCATTTATGCTTAACAAATAATTTTTTGTATATCTA
ATACTAGTGAAAAAGTAATAAAATTGATAAAAGTATGCCTTGTAAATTAT
TTAAACAATTTTGTGGTAATTAATTACAAGGAAACATTTTTAATTAAATA
TTTTACTTTTAATTCCGTAAAATCCAACAAATATGCTTCAAAAAATGTAT
CAAGAATATCAAGATTATTTTTAAGCATTAATACGCACAAATATAAAATG
TTTTTAAATTAAGTTGTATCAATTTAGTTGAATATTAAACGAAATTTTGA
TTTTTAAACTATTTATTCTATTAGTGTAGAAATGATTAAATAATTATATG
CCTTTTATATTTCTCCCTTGCTATCAATTCTATTTCAAGTCACATTTTCA
CATAATTTCAAATAAACCGATAAAGCATTCACAGATACAAATCAAGGAGA
TATACAAAACCGGTATTCGACGATTACCAGGAACCGACTACAACAGAAAC
AAGCGAGACCACTGGCAAGAAAGATATGTATATAAAACCAATAAAAATTG
AAGTGTAAAACGAGGATCCAATACCAACGGGATGTAAAATCGAGGAAACA
GCAGAAACGGAAAATAATGAACAAGAGGAGATGATAGAAACCTGAAAATA
GCAATGGAACAACGAATACGGGAGATAGACAGTATTAAGAATCAATTGTT
CCAGTCGAGAAACCTAATAAAGGCACTGAAGAGGGAATGTCAATTATCAA
ATACAAAACGACAAGAGTTAGAAGAGGAGAATAGATCCCTAAACCAAAAA
CTTAATCGAAAATGGAAACAAAAAGTAGACGAATTAAAAAGCGAATTGGC
AACAAAATGGATCAACAACGTACTAGAAGATTATTGGAAAAAAGAAGCTC
AAAGAATCAAAAGAAAGTACTGTAGAAGAAAAAATCTAAATCGAGCTTAT
AAAAAAATCGAGACGTACGCTCGGAAACAATACAGAAAAGTACTAAATCT
CGAACAAATCCAAATGTTGGGGAAGCGAACGAAAAACAGAAATCCGCAAT
AGAGTAGAAAGATAAAATCGCTTTAATTTCGGAAATAAGAAGTTGTCTCC
TGAGAGCAGAAACCCTGATAATAAACATACCTGATGAAGACAATCAAGAT
GATACAAAATAAAGCAAAAACTCCTTCTGTAAAAAAACGAGTATAAAATG
AATTAATAAAAAGAAATGAATGTGTACATAAATAGAAAGATGGGACAATG
GCTCAGAATCATCGTCCTCGCGACATTTAACCACGTCGTCGAATCAACCT
TACATCGAAAAGTTACCCTCTCATTTTATTTAGTTATCGTTTGTTTTGTA
TTAAACGAATTAAACGAATTTAAGTTTAATATGAATGATAAAAAGAACAG
GCTGAAGGAAGGAGGCGACTGATAACAGTAGTAGTGGGATGTGTCACCGC
AAAAACACCCCCTACTGACATAAAAATTTTTTAAGTACAAGGTCATTATT
TTTTCAAAATTTTTTAAATAGAATTTACTACTTAAAATTATTAGTTTTAT
TATAATTTTATTTATTATTATTATTATT
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protein sequence of SMED30008510-orf-1

>SMED30008510-orf-1 ID=SMED30008510-orf-1|Name=SMED30008510-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=133bp
MEQRIREIDSIKNQLFQSRNLIKALKRECQLSNTKRQELEEENRSLNQKL
NRKWKQKVDELKSELATKWINNVLEDYWKKEAQRIKRKYCRRKNLNRAYK
KIETYARKQYRKVLNLEQIQMLGKRTKNRNPQ*
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protein sequence of SMED30008510-orf-2

>SMED30008510-orf-2 ID=SMED30008510-orf-2|Name=SMED30008510-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=218bp
MNFNINKINFFPNNYGYVPQPIIQHHYQHDFNKDCNIQRHFNQELPLNTL
DFPVRHPRTRPGMPIRTPQFPNNGNVVNSHYFPVLSLQNFNNPYLIRSPF
QHPKILTEKPINSIMDKTHNSIPNFNYRKSEKINKENLKFSNKHTPHKLV
LNNQFFIATSFVNIKVCDKDSDDLIRHKMKYSGFSEKQIQSHLSSKRSNW
DKMVNEIRMNCKNRKCY*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000136whole organism
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 8..56