SMED30008507

Overview
NameSMED30008507
Smed IDSMED30008507
Length (bp)3448
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30008507 (SMED30008507) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30008507 (SMED30008507) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30008507 (SMED30008507) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30008507 (SMED30008507) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30008507

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 1

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X2 cellSMED30008507SMESG000008335.1 SmedASXL_077443SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30008507 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.000226:152191..155631 +13341
v31.000355:28375..31792 +12711
v31.001993:43762..53913 +11295
v31.000246:174595..177754 -11127
Homology
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BLAST of SMED30008507 vs. Planmine SMEST
Match: SMESG000008335.1 (SMESG000008335.1)

HSP 1 Score: 378.637 bits (971), Expect = 5.433e-117
Identity = 181/186 (97.31%), Postives = 182/186 (97.85%), Query Frame = 2 
Query: 2003 RSEIQWRDMERTTLTVPSRFAGRYRQALWDQGYTISTHGTPEWPNRRSNNCDEDTELPSLVIKREPGRNPAREIRQETEGLLYRYEQLERKYRYLANQKRRRLARINEDITNGHIPSSDDHLPSYRVAYDPRDPALLELDAPVHLVFPKLLLQPDIKDILEDRGTEEHVYSRRRLSRKETTNLAKN 2560
            RSEIQWRDME TTLTVPSRFAGRYRQALWDQGYTISTHGTPEWPNRRSNNCDEDTELPSLVIKREPGRNPAREIRQETEGLLYRYEQLERKYRYLANQKRRRLARINEDITNGHIPSSD HLPSYRVA+DP DPALLELDAPVHLVFPKLLLQPDIKDILEDR TEEHVYSRRRLSRKETTNLAKN
Sbjct:   88 RSEIQWRDMESTTLTVPSRFAGRYRQALWDQGYTISTHGTPEWPNRRSNNCDEDTELPSLVIKREPGRNPAREIRQETEGLLYRYEQLERKYRYLANQKRRRLARINEDITNGHIPSSDGHLPSYRVAHDPSDPALLELDAPVHLVFPKLLLQPDIKDILEDRVTEEHVYSRRRLSRKETTNLAKN 273

HSP 2 Score: 159.073 bits (401), Expect = 5.568e-40
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 2 
Query: 1160 MRSENINTNQKRPPISKNHMSCESPRHIKSVLGDITSIFIMNESMRHSAKSYATEEPKEDIMDKSRGFIMEDGGE 1384
            MRSENINTNQKRPPISKNHMSCESPRHIKSVLGDITSIFIMNESMRHSAKSYATEEPKEDIMDKSRGFIMEDGGE
Sbjct:    1 MRSENINTNQKRPPISKNHMSCESPRHIKSVLGDITSIFIMNESMRHSAKSYATEEPKEDIMDKSRGFIMEDGGE 75

HSP 3 Score: 90.1225 bits (222), Expect = 4.643e-18
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 3 
Query: 2781 AMNAIKWIGSEKKLRRENNGLHQQCIQLSRELQRIKATWVEPSQ 2912
            +MNAIKWIGSEKKLRRENNGLHQQCIQLSRELQ IKATWVEPSQ
Sbjct:  274 SMNAIKWIGSEKKLRRENNGLHQQCIQLSRELQWIKATWVEPSQ 317
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BLAST of SMED30008507 vs. Planmine SMEST
Match: SMESG000054252.1 (SMESG000054252.1)

HSP 1 Score: 240.35 bits (612), Expect = 1.507e-72
Identity = 116/177 (65.54%), Postives = 141/177 (79.66%), Query Frame = 2 
Query: 2000 GRSEIQWRDMERTTLTVPSRFAGRYRQALWDQGYTISTHGTPEWPNRRSNNCDEDTELPSLVIKREPGRNPAREIRQETEGLLYRYEQLERKYRYLANQKRRRLARINEDITNGHIPSSDDHLPSYRVAYDPRDPALLELDAPVHLVFPKLLLQPDIKDILEDRGTEEHVYSRRRLS 2530
            G     W+D++ TTLTVP+ FAGRY QALW+ GYTIST+GTP+WP R++N  + D ELPS++IKREPGRNP REIRQ+ EG L+R EQLE +YR+L  +++  LARIN DI +G IPSSD HLP+Y +AYD RDPALLE DA VHLV PK LLQPDI+DILED+G E H YSRRRL+
Sbjct:   13 GTHSGNWKDVDLTTLTVPTLFAGRYTQALWNLGYTISTYGTPKWPYRKTNGPEGDFELPSILIKREPGRNPTREIRQKAEGELHRLEQLEWRYRFLVKRQKEHLARINRDIASGRIPSSDMHLPAYGIAYDHRDPALLEGDALVHLVVPKSLLQPDIRDILEDQGVEAHAYSRRRLT 189
[Close]
BLAST of SMED30008507 vs. Planmine SMEST
Match: SMESG000054252.1 (SMESG000054252.1)

HSP 1 Score: 242.276 bits (617), Expect = 2.457e-71
Identity = 116/177 (65.54%), Postives = 141/177 (79.66%), Query Frame = 2 
Query: 2000 GRSEIQWRDMERTTLTVPSRFAGRYRQALWDQGYTISTHGTPEWPNRRSNNCDEDTELPSLVIKREPGRNPAREIRQETEGLLYRYEQLERKYRYLANQKRRRLARINEDITNGHIPSSDDHLPSYRVAYDPRDPALLELDAPVHLVFPKLLLQPDIKDILEDRGTEEHVYSRRRLS 2530
            G     W+D++ TTLTVP+ FAGRY QALW+ GYTIST+GTP+WP R++N  + D ELPS++IKREPGRNP REIRQ+ EG L+R EQLE +YR+L  +++  LARIN DI +G IPSSD HLP+Y +AYD RDPALLE DA VHLV PK LLQPDI+DILED+G E H YSRRRL+
Sbjct:   13 GTHSGNWKDVDLTTLTVPTLFAGRYTQALWNLGYTISTYGTPKWPYRKTNGPEGDFELPSILIKREPGRNPTREIRQKAEGELHRLEQLEWRYRFLVKRQKEHLARINRDIASGRIPSSDMHLPAYGIAYDHRDPALLEGDALVHLVVPKSLLQPDIRDILEDQGVEAHAYSRRRLT 189
[Close]
BLAST of SMED30008507 vs. Planmine SMEST
Match: SMESG000047667.1 (SMESG000047667.1)

HSP 1 Score: 261.151 bits (666), Expect = 6.745e-71
Identity = 126/180 (70.00%), Postives = 148/180 (82.22%), Query Frame = 2 
Query: 2000 GRSEIQWRDMERTTLTVPSRFAGRYRQALWDQGYTISTHGTPEWPNRRSNNCDEDTELPSLVIKREPGRNPAREIRQETEGLLYRYEQLERKYRYLANQKRRRLARINEDITNGHIPSSDDHLPSYRVAYDPRDPALLELDAPVHLVFPKLLLQPDIKDILEDRGTEEHVYSRRRLSRKE 2539
            G S  + RD+ERTTLTVPS+FAGRYRQALWD+GY+IST+GTPEWPNR  +  DED +LPSLVIKREPGRNPAREIRQE+E  LY+ EQLER+YR LANQ+ RRL +I  DI++G IP SD +LP Y VAYDP++PALL LDAPV+LV PK LLQPDI+D L D+G EEH YS R L RK+
Sbjct: 1560 GSSSSKCRDVERTTLTVPSKFAGRYRQALWDRGYSISTYGTPEWPNRNPDRRDEDIKLPSLVIKREPGRNPAREIRQESEEALYKLEQLERRYRRLANQQGRRLVKITMDISSGRIPISDGYLPDYGVAYDPKNPALLALDAPVYLVVPKRLLQPDIRDALNDKGNEEHAYSCRHLMRKD 1739
[Close]
BLAST of SMED30008507 vs. Planmine SMEST
Match: SMESG000010307.1 (SMESG000010307.1)

HSP 1 Score: 228.409 bits (581), Expect = 1.230e-66
Identity = 109/181 (60.22%), Postives = 138/181 (76.24%), Query Frame = 2 
Query: 1994 ILGRSEIQWRDMERTTLTVPSRFAGRYRQALWDQGYTISTHGTPEWPNRRSNNCDEDTELPSLVIKREPGRNPAREIRQETEGLLYRYEQLERKYRYLANQKRRRLARINEDITNGHIPSSDDHLPSYRVAYDPRDPALLELDAPVHLVFPKLLLQPDIKDILEDRGTEEHVYSRRRLSRK 2536
            ++G S  QW+D ERTTL +PS+FAGRYRQALWD  Y++ST+GT EWPNR     DED ELPSL IKREPGRN AR+IR E E  L +++ LERKYR+ A+ +R+RL RIN+DI +G I SSD +LP Y +A+DP DPALLEL APVH+  PK ++Q DI + L+DR +EEH YS+R L R+
Sbjct:   53 VIGNSGTQWKDDERTTLIIPSKFAGRYRQALWDGVYSLSTYGTSEWPNRSRIRHDEDVELPSLAIKREPGRNTARKIRHEAEVALQQFDHLERKYRWKASLQRKRLMRINKDIASGRISSSDGYLPDYNIAFDPEDPALLELSAPVHMALPKHIMQRDILEALDDRTSEEHAYSQRPLKRE 233
The following BLAST results are available for this feature:
BLAST of SMED30008507 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008507 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008507 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008507 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008507 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008507 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008507 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008507 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008507 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008507 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008507 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008507 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008507 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008507 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000008335.15.433e-11797.31SMESG000008335.1[more]
SMESG000054252.11.507e-7265.54SMESG000054252.1[more]
SMESG000054252.12.457e-7165.54SMESG000054252.1[more]
SMESG000047667.16.745e-7170.00SMESG000047667.1[more]
SMESG000010307.11.230e-6660.22SMESG000010307.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30008507 ID=SMED30008507|Name=SMED30008507|organism=Schmidtea mediterranea sexual|type=transcript|length=3448bp
TGTTTTATCGCATCAAATTTAACACAGAATAGGTATAAATACCAATCCAT
TTTCGCATAATTTTAATCGCAAAATTGCGAATCGCTTGTTAGCAAAGCAA
AAGCTATCGTAAATCACTAATCACTTATCCCTGAGCGTGGAGCACTGAGT
TACTGATCACGTTAATCATAAAAGAGTTAAATGAGATTAATAAACGCGTC
CAAAATAATGACCTATTAATATGGATAAGAGTCGAACAATAACTTAGCGA
GTGATAAGGAATCCCAATTCAATTACTTCAAGCGCTAAATTAGTGGCGAT
AATTAGTGATATAGAGATAGTTTAGTCGAAATAGAGGTTTGGTTAAACCA
CTTAAAATAATATTCCACCGATCTAGACCGAAATTAACTTCTAATTTATA
AATAGCAAAAACGCTCGCTGTGATATAACGTTAATATATTAAAATTTTAG
ACCGTCATCTTAACGTGGGCTATTTATCAATAAGTAATTTCCCAACATGA
CATCTACTATACATTAGTGAAAGTACAATCAGGTATAGGTTTTCTTTAAT
CCTAAAAATACCCATTAAGGAAACAGATCGAGATAGATAATGAGATAATT
CCATTAAATCGACCAACTAACGCGTTCGCATCGTAATAACAAATGTATAC
ATACTTCAGACATACAAAACCAAAAGACAAGTGTGAGAAATGAACTTTAT
TAATATCAACTCACTTCCTAAATTTTTACCGAGGTTGGAATTCAATTCCA
CCAAAACGTGGGAACAAAAACAGACCGAATGGATCAGGAAAGCCCCATTC
TAAGTGGCATTGACCTCAGCCTGTGATTGAGAAGTGAAGTTCCGCTAAAG
AACCATGATAGACGATAACGAACAAGATTTAATAGGCGAAGCAAGTGACA
CTATCACATAAAATCATCTAAAGGTAGGAAATTAAACTATTACTTTAGTA
ATAAATCAACTAATCCACATGCAGTAGACATCGATTGAATTCGCTGAGAA
ATATTTCCATGTGAAAATAATAAGTAGACCGAGTGGTTATACTAGTAATT
CCTCGCACACCGAGGAGGGGTGAGGAAAAATTACTTTACCACAACTCCAT
ATGGCAGGAAATAATATCGATTCTCCTGCTAGTATCATAAAATTAGCTCG
AAGAAATAAATGCGGAGTGAGAATATAAACACCAATCAGAAACGGCCACC
GATATCTAAGAATCACATGAGCTGTGAATCCCCCCGGCATATAAAATCAG
TACTAGGTGACATTACCAGCATTTTTATCATGAACGAATCTATGAGACAC
AGTGCTAAAAGTTACGCCACTGAGGAACCAAAGGAAGATATCATGGACAA
ATCAAGAGGTTTCATCATGGAAGATGGCGGAGAACGCAGTCGTAGACGAT
CCAGGATAAATGAAAGAAGTTTTCATCAATCACGTATCAACCGGCACGAG
GACGAATCCAGAAAATCAAGCAGCGAGTAAGGCGACCTGTTCTTAATGAT
TAATATATTAGTTCTGGAATTTATGTCTTATCTTGTACTACTTTATTTTT
TTTATTAATAAATGAGTTAGATCAAAATCGTCAGGTTGACTATTAGTATA
AATGTCCGATGAATGATCTAGTTTAAAAGTTCGAATATGATCTGAAGAAA
TCAGAATAGGGATCAAGCGTCGTGACTAATGAAAGATCGAATTATTATAC
TGATAGTACGTGGATTAAGCAAGTAAACTTACTTAATTACTTATGAACTA
AAATTTTATAAAATTGTATGGGTGAAACTCAGCTTGTGTGATGTAGCAGG
CACTACTTACGAGTACCATAATACACTGACGTTACCTTTTATCCCGACCA
ACTAAACCAATATGGAAAGTAACGCGTGACGAAAGTAAGAACAATAGAAT
TACCCTATTATCTGACGGCGACTAATACGCTTAACTATCAAGTAATAAAC
GATTCCTCCCTAACTATGACATGAACAATATTGTCTATTAATGATCTTAG
GGCGTTCAGAGATCCAGTGGAGAGATATGGAGAGGACAACATTGACCGTC
CCGAGCAGATTTGCGGGACGGTACCGCCAGGCCCTCTGGGATCAGGGATA
CACCATCTCCACGCATGGCACCCCCGAGTGGCCGAACAGACGTTCAAACA
ATTGCGACGAAGATACAGAATTGCCGAGCTTAGTAATCAAGCGGGAGCCA
GGAAGGAACCCGGCTCGGGAGATTCGACAAGAAACAGAGGGATTACTCTA
CCGGTACGAGCAACTGGAGCGAAAATATCGATACCTTGCAAATCAAAAAC
GGCGACGGCTAGCCAGGATTAATGAAGATATAACCAACGGGCATATACCA
AGTTCAGACGACCATTTACCGAGTTACCGCGTCGCATACGATCCAAGGGA
TCCAGCACTTTTGGAGCTTGATGCACCAGTCCATCTGGTTTTCCCAAAGC
TGTTACTGCAACCAGATATAAAGGACATACTAGAAGACAGAGGGACGGAG
GAACACGTCTACTCTCGAAGGCGCCTATCGCGGAAAGAAACCACAAATTT
GGCCAAAAATTGTAATTAACTGAAATAAATGTATTATTTTTCTTTATTAG
TGATTTAAAGTAATTGTACAAAATACTGTTGGATAAGGAAGATTCATCTT
AATAGTAATTCAGGGAGAAATAATAAGTAATAGTTTTTAGGCAGAATATC
ACCTATAAGATTTATTCATCCAATTAAATACTTTAGATATTATAATTAAC
ATTATGTATTAATATTACTATAAAAATTCAGCCATGAACGCCATAAAATG
GATTGGATCGGAGAAGAAACTTCGTCGAGAAAATAATGGCTTGCATCAGC
AATGCATTCAGCTCAGCCGCGAGCTCCAGCGGATTAAAGCCACTTGGGTA
GAGCCGTCCCAAGTGAAACGGCTGTATAGAAGATAGATGCAGCACAGAAG
GGCTGGCAAGAGGAGAAGGTCTTAAATCAGGCCCAAAAGATACAAATTCG
AGGCTTGGAGGTTGCTGTGGCGGTGAACCAGGAAGGAAGGGCAGTTACTT
ACCCTCTGGTATTTGCCCCGGCACAAATTGCCTACCAGAGCCAGGCAGAT
CCGGCGAAAACACCCAGCCAACCTAAGCCACCCCCGTGACAGGACGAGCT
GAACGGGAACGCCGAAAGATGCAAAAGCAACGCAATGATTAAATTATCTG
TTATATATTGGATTTTGTCGAGATAAAAATGTATTGTGTTACAAATAAAA
GTATTTTTCTTATAATTTGGTTGTTTTTACAAGTCAAATGTTTTGTGAAT
GAAAATAATAAATGTGAGAAGTAGATTATAATTAGCGTAAGTAAAACATG
AAAAGTGAGGGATCTAAATAAGCAAGACGAAGACGACCACATACCTTCCA
TCGGTAGCTCGCTGAACCAGCTGCAGACCGGGTCTTAGCAGTTTTGGA
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protein sequence of SMED30008507-orf-1

>SMED30008507-orf-1 ID=SMED30008507-orf-1|Name=SMED30008507-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=193bp
MILGRSEIQWRDMERTTLTVPSRFAGRYRQALWDQGYTISTHGTPEWPNR
RSNNCDEDTELPSLVIKREPGRNPAREIRQETEGLLYRYEQLERKYRYLA
NQKRRRLARINEDITNGHIPSSDDHLPSYRVAYDPRDPALLELDAPVHLV
FPKLLLQPDIKDILEDRGTEEHVYSRRRLSRKETTNLAKNCN*
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protein sequence of SMED30008507-orf-2

>SMED30008507-orf-2 ID=SMED30008507-orf-2|Name=SMED30008507-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=107bp
MRSENINTNQKRPPISKNHMSCESPRHIKSVLGDITSIFIMNESMRHSAK
SYATEEPKEDIMDKSRGFIMEDGGERSRRRSRINERSFHQSRINRHEDES
RKSSSE*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002111X2 cell
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableTMHMMTMhelixcoord: 15..37