SMED30008486
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30008486 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 12
Alignments
SMED30008486 aligns in the following genomic locations:
Homology
BLAST of SMED30008486 vs. Planmine SMEST
Match: SMESG000014086.1 (SMESG000014086.1) HSP 1 Score: 2737.6 bits (7095), Expect = 0.000e+0 Identity = 1399/1400 (99.93%), Postives = 1399/1400 (99.93%), Query Frame = 2 Query: 4664 MKSENEQQEIRRLSDRIQTNEKSIDNQSKTLNQAIQQIDELTEENLKYKMELEKISNQFYELEEEYRILSGKLEKTNEELKAKDIQIQHYKDIENDLNGGLKRKSIDCEQLQKEYDCILKQCEEFQEKFDQIGNIEQEALRTIEQKNMQCICLQENLEYIQKQLYLTEDKLKCCNNQWLDKYGQLKCNYEQLECQYLQIQNQLEVLNRDRQLVETTFSSHNNKMICLSESYHKLTEENSQLVQENCLKDSELERLCCEKSKLEKCNMDLSDKIESMGCQLRNAHMEICNLTNQLHDSQLKADEISLKIKENLSPSVRHYGSHPSLSKIDICNSEMINFEHRDYCDLKTRYSSLCGQIDNLINQLKKKDKRIMELQKEKELICRNLSNYEQIQCDYQDLDYKYQQLKDDYSNLSHYYQNINFSHNQQSFDVPNHEINVIQGCADELQETIESHSQEIEELKLSQQALENDYRFCCNQVKELENQIQIDNIELEKWNQSYYDSENNYKLLEEKFDQLKYAYDDAANQLPQLNDLKQDLIDKXXXXXXXXXXXXXXXXXXMKAHXXXXXXXXXXENYKSKLSDMELYYETEIDQFRHELKSAKQSNPPIDYQELINCLKDKNQAYECNLSELQNKYHKQNLNFNELKNEQECILIKTEQLKQEYDQQCENIDKLSGQLFDKNDLIEQITAENHQLNSELELNQLKLCQLTEQNECLNQFLKEKNNELIMSVENGVAKEQQSIELSNHVEYLTEQLEQRNNIIDDFKKELSMNYDAIEELKQENSKLCSEREKLTRIISENDQIINSKNELLNQYCKELEINYELINKLQSEPKPKSSISNKEFFEMKQMNEKLNEELEYLHRKLDPNIQSTETQTQKDKNQAELNPTDYLVDSPSPISDFRAYNEKDSFRQIPSENPENDLTYSTSKSVAWKSVTHTDQPENIGSGVLELQKAIDEYNTLVTSIELSEGIINISGERESTRKIQKFSSENVGKSASPDVSTLNPKIDIEFQQIQEKXXXXXXXXXXXXSMRPTSGMLTGNFPIDVQTVTNEETVQHFHQPNFQKVIDILKNCNVQIDFDDTKESFDVYLQRMMQKYSELEQFYLASMKINLDILQDPVHIQNLDVFSELYEKSRQKLIQNCQLLKSSIAYNVPELHDDVQSINDQRLTTEDLTKFVDLVTTQQLQLSALKLTHTNLQNITPITDDESHKINATYVNQQYQNLWLTEDVCDPNIVTESLKANQLSLKKKLIEETTPKDIIPAINTLANSAEYVNVVQNFPNDLTATTNVINPALKSGLSKEFVTEQEALEYRSKDSIQFSADGSIEQPKKDLFLKTSIKVTRSSQRNDSRSINFPHSSDEHYTLETIENEIPLNSGISNLNPSLVEFSNAHMNSGQQFQQNISK 8863 MKSENEQQEIRRLSDRIQTNEKSIDNQSKTLNQAIQQIDELTEENLKYKMELEKISNQFYELEEEYRILSGKLEKTNEELKAKDIQIQHYKDIENDLNGGLKRKSIDCEQLQKEYDCILKQCEEFQEKFDQIGNIEQEALRTIEQKNMQCICLQENLEYIQKQLYLTEDKLKCCNNQWLDKYGQLKCNYEQLECQYLQIQNQLEVLNRDRQLVETTFSSHNNKMICLSESYHKLTEENSQLVQENCLKDSELERLCCEKSKLEKCNMDLSDKIESMGCQLRNAHMEICNLTNQLHDSQLKADEISLKIKENLSPSVRHYGSHPSLSKIDICNSEMINFEHRDYCDLKTRYSSLCGQIDNLINQLKKKDKRIMELQKEKELICRNLSNYEQIQCDYQDLDYKYQQLKDDYSNLSHYYQNINFSHNQQSFDVPNHEINVIQGCADELQETIESHSQEIEELKLSQQALENDYRFCCNQVKELENQIQIDNIELEKWNQSYYDSENNYKLLEEKFDQLKYAYDDAANQLPQLNDLKQDLIDKTNRINEITNINDNIEQQIMKAHQQINNQNIIIENYKSKLSDMELYYETEIDQFRHELKSAKQSNPPIDYQELINCLKDKNQAYECNLSELQNKYHKQNLNFNELKNEQECILIKTEQLKQEYDQQCENIDKLSGQLFDKNDLIEQITAENHQLNSELELNQLKLCQLTEQNECLNQFLKEKNNELIMSVENGVAKEQQSIELSNHVEYLTEQLEQRNNIIDDFKKELSMNYDAIEELKQENSKLCSEREKLTRIISENDQIINSKNELLNQYCKELEINYELINKLQSEPKPKSSISNKEFFEMKQMNEKLNEELEYLHRKLDPNIQSTETQTQKDKNQAELNPTDYLVDSPSPISDFRAYNEKDSFRQIPSENPENDLTYSTSKSVAWKSVTHTDQPENIGSGVLELQKAIDEYNTLVTSIELSEGIINISGERESTRKIQKFSSENVGKSASPDVSTLNPKIDIEFQQIQEKVDEVDVIVVDLDSMRPTSGMLTGNFPIDVQTVTNEETVQHFHQPNFQKVIDILKNCNVQIDFDDTKESFDVYLQRMMQKYSELEQFYLASMKINLDILQDPVHIQNLDVFSELYEKSRQKLIQNCQLLKSSIAYNVPELHDDVQSINDQRLTTEDLTKFVDLVTTQQLQLSALKLTHTNLQNITPITDDESHKINATYVNQQYQNLWLTEDVCDPNIVTESLKANQLSLKKKLIEETTPKDIIPAINTLANSAEYVNVVQNFPNDLTATTNVINPALKSGLSKEFVTEQEALEYRSKDSIQFSADGSIEQPKKDLFLKTSIKVTRSSQRNDSRSINFPHSSDEHYTLETIENEIPLNSGISNLNPSLVEFSNAHMNSGQQFQQNI K Sbjct: 1 MKSENEQQEIRRLSDRIQTNEKSIDNQSKTLNQAIQQIDELTEENLKYKMELEKISNQFYELEEEYRILSGKLEKTNEELKAKDIQIQHYKDIENDLNGGLKRKSIDCEQLQKEYDCILKQCEEFQEKFDQIGNIEQEALRTIEQKNMQCICLQENLEYIQKQLYLTEDKLKCCNNQWLDKYGQLKCNYEQLECQYLQIQNQLEVLNRDRQLVETTFSSHNNKMICLSESYHKLTEENSQLVQENCLKDSELERLCCEKSKLEKCNMDLSDKIESMGCQLRNAHMEICNLTNQLHDSQLKADEISLKIKENLSPSVRHYGSHPSLSKIDICNSEMINFEHRDYCDLKTRYSSLCGQIDNLINQLKKKDKRIMELQKEKELICRNLSNYEQIQCDYQDLDYKYQQLKDDYSNLSHYYQNINFSHNQQSFDVPNHEINVIQGCADELQETIESHSQEIEELKLSQQALENDYRFCCNQVKELENQIQIDNIELEKWNQSYYDSENNYKLLEEKFDQLKYAYDDAANQLPQLNDLKQDLIDKTNRINEITNINDNIEQQIMKAHQQINNQNIIIENYKSKLSDMELYYETEIDQFRHELKSAKQSNPPIDYQELINCLKDKNQAYECNLSELQNKYHKQNLNFNELKNEQECILIKTEQLKQEYDQQCENIDKLSGQLFDKNDLIEQITAENHQLNSELELNQLKLCQLTEQNECLNQFLKEKNNELIMSVENGVAKEQQSIELSNHVEYLTEQLEQRNNIIDDFKKELSMNYDAIEELKQENSKLCSEREKLTRIISENDQIINSKNELLNQYCKELEINYELINKLQSEPKPKSSISNKEFFEMKQMNEKLNEELEYLHRKLDPNIQSTETQTQKDKNQAELNPTDYLVDSPSPISDFRAYNEKDSFRQIPSENPENDLTYSTSKSVAWKSVTHTDQPENIGSGVLELQKAIDEYNTLVTSIELSEGIINISGERESTRKIQKFSSENVGKSASPDVSTLNPKIDIEFQQIQEKVDEVDVIVVDLDSMRPTSGMLTGNFPIDVQTVTNEETVQHFHQPNFQKVIDILKNCNVQIDFDDTKESFDVYLQRMMQKYSELEQFYLASMKINLDILQDPVHIQNLDVFSELYEKSRQKLIQNCQLLKSSIAYNVPELHDDVQSINDQRLTTEDLTKFVDLVTTQQLQLSALKLTHTNLQNITPITDDESHKINATYVNQQYQNLWLTEDVCDPNIVTESLKANQLSLKKKLIEETTPKDIIPAINTLANSAEYVNVVQNFPNDLTATTNVINPALKSGLSKEFVTEQEALEYRSKDSIQFSADGSIEQPKKDLFLKTSIKVTRSSQRNDSRSINFPHSSDEHYTLETIENEIPLNSGISNLNPSLVEFSNAHMNSGQQFQQNIPK 1400 HSP 2 Score: 69.707 bits (169), Expect = 5.766e-11 Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 3 Query: 8859 PKVPVCQRVKLNQSITWKIKSVMHQLDNLRK 8951 PKVPVCQRVKLNQSITWKIKSVMHQLDNLRK Sbjct: 1399 PKVPVCQRVKLNQSITWKIKSVMHQLDNLRK 1429
BLAST of SMED30008486 vs. Planmine SMEST
Match: SMESG000014087.1 (SMESG000014087.1) HSP 1 Score: 2725.66 bits (7064), Expect = 0.000e+0 Identity = 1424/1427 (99.79%), Postives = 1426/1427 (99.93%), Query Frame = 2 Query: 119 MDRTRASSLESHKNLCDKYDSFSSSLDPSKLCRRNRFNSLVGNQTEFSDRSGSTDFCYNNDYNRPLVGKSDLKSQYNELQCTVNRMLNGGIFDEMGSAMPSINLSDALKHEYRQMMSALKELESILGCKRKPNEMANYSNTPNNNDAEIHQMQREIYYRDSLIKCLSDRLKVLCKANDKLIIDYENQENILSEELICLKRQLEKAKDALRSLSSVKSRSNISAMQALENETFYLRESLRNKELMINDLKHRVEKVIHENAELKCELDSKEVLVSHYESNRYDREISYSNRLNEQLQVENDCKSQLIKDLQNKLDLANMAHQDHSVVNQLSNELLLAQEENEISKEAFLEQSDLLNDFKNQIKILSEHNEFKDDTICELRCCIRQLTECSPTNIPIRDQDHCTVTSDRGCQSIEMKTNNINSLFCCIKKYLTENRPDLLRLFDPECNAYNSLEKFIINVIGMTGKTDQNQNDIELFKEFLTNEINLKNSIIKFLASNLTGDIESLEKLQTHMNSILSLDMDRGFKNDLKNYLHNCFLLDDNLRLVIEYLVKSTNSLTHKYQALSAENLNLVEKNAMYAPNQKRDIQSIDTNSRLTSIMNFPQNDAAKSSMTSNQTDKIKTLEEEIKIMREAHQKDKKCFISELDDKNYEIQNLKEKLSDLQKIMDENARMESEFKRLNSEHKELLKNSKECQFENDRLKGEIEVLSVKNKQSDRNLQMKNSELDNLEHAMRRVSDQFANLSSTQEHVKKSIETIKDAEIERLNKEIEDLKVFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQINEMKNVISALQRELDKSNMEKMGLLDSIAKMEEENRKLAEELQMKTATLQLKSNQTDINNELNEAIEKLKRENQQLMKQLQQDEFQESQLRSSVNNLKIENKTMELRNNSINSDKNALENQIKQLRDRISEMNRNCEENHVSKIVVKSEADQSDMYKQKVVDLEGILVCLTDELNEKVELVDNLRKLVKNDECVIPCADPCVHDTVDINQQLLLQKDSEIAFLKSKIETLERRSINXXXXXXXXXXXXXVGDEIRNLRLELAENDKRIEYLNQQLNERSENLTNLQHLLKEKDEIIENSLKIIKVKTDALEESEKMLHSMTLENTNIKEDLSSRFQDESQLKLLNSTIKNLTNEIESLRTENDKLRLEITKLSSEKQKLSIQRKSSLPPIGLVQADNSVQQINSEIQKLYIDFEGKSNEIREYSLKEIKNRDRKIDELNLELKLKSDQFSTIMVENRRLVDKIEDESQRSNKYEQNLLLKEQILEKMLKDKEKIRATFITELHNKNEELTDKNNTVYFLNAELHRLASEIEVLNSELQVVKISDKFQIQSKNTLEITQANLENLKTENNSLRLCINLKTAELESMKNELTIKQIQNGKLSNEIEFANSKSKDLELLRRDSVKTE 4399 MDRTRASSLESHKNLCDKYDSFSSSLDPSKLCRRNRFNSLVGNQTEFSDRSGSTDFCYNNDYNRPLVGKSDLKSQYNELQCTVNRMLNGGIFDEMGSAMPSINLSDALKHEYRQMMSALKELESILGCKRKPNEMANYSNTPNNNDAEIHQMQREIYYRDSLIKCLSDRLKVLCKANDKLIIDYENQENILSEELICLKRQLEKAKDALRSLSSVKSRSNISAMQALENETFYLRESLRNKELMINDLKHRVEKVIHENAELKCELDSKEVLVSHYESNRYDREISYSNRLNEQLQVENDCKSQLIKDLQNKLDLANMAHQDHSVVNQLSNELLLAQEENEISKEAFLEQSDLLNDFKNQIKILSEHNEFKDDTICELRCCIRQLTECSPTNIPIRD DHCTVTSDRGCQSIEMKTNNINSLFCCIKKYLTENRPDLLRLFDPECNAYNSLEKFIINVIGMTGKTDQNQNDIELFKEFLTNEINLKNSIIKFLASNLTGDIESLEKLQTHMNSILSLDMDRGFKNDLKNYLHNCFLLDDNLRLVIEYLVKSTNSLTHKYQALSAENLNLVEKNAMYAPNQKRDIQSIDTNSRLTSIMNFPQNDAAKSSMTSNQTDKIKTLEEEIKIMREAHQKDKKCFISELDDKNYEIQNLKEKLSDLQKIMDENARMESEFKRLNSEHKELLKNSKECQFENDRLKGEIEVLSVKNKQSDRNLQMKNSELDNLEHAMRRVSDQFANLSSTQEHVKKSIETIKDAEIERLNKEIEDLKVFKNKYNELKLLNNENSQKNSLLSKSLESLEAQINEMKNVISALQRELDKSNMEKMGLLDSIAKMEEENRKLAEELQMKTATLQLKSNQTDINNELNEAIEKLKRENQQLMKQLQQDEFQESQLRSSVNNLKIENKTMELRNNSINSDKNALENQIKQLRDRISEMNRNCEENHVSKIVVKSEADQSDMYKQKVVDLEGILVCLTDELNEKVELVDNLRKLVKNDECVIPCADPCVHDTVDINQQLLLQKDSEIAFLKSKIETLERRSINSQSKLLSLEKSQSVGDEIRNLRLELAENDKRIEYLNQQLNERSENLTNLQHLLKEKDEIIENSLKIIKVKTDALEESEKMLHSMTLENTNIKEDLSSRFQDESQLKLLNSTIKNLTNEIESLRTENDKLRLEITKLSSEKQKLSIQRKSSLPPIGLVQADNSVQQINSEIQKLYIDFEGKSNEIREYSLKEIKNRDRKIDELNLELKLKSDQFSTIMVENRRLVDKIEDESQRS+KYEQNLLLKEQILEKMLKDKEKIRATFITELHNKNEELTDKNNTVYFLNAELHRLASEIEVLNSELQVVKISDKFQ+QSKNTLEITQANLENLKTENNSLRLCINLKTAELESMKNELTIKQIQNGKLSNEIEFANSKSKDLELLRRDSVKTE Sbjct: 1 MDRTRASSLESHKNLCDKYDSFSSSLDPSKLCRRNRFNSLVGNQTEFSDRSGSTDFCYNNDYNRPLVGKSDLKSQYNELQCTVNRMLNGGIFDEMGSAMPSINLSDALKHEYRQMMSALKELESILGCKRKPNEMANYSNTPNNNDAEIHQMQREIYYRDSLIKCLSDRLKVLCKANDKLIIDYENQENILSEELICLKRQLEKAKDALRSLSSVKSRSNISAMQALENETFYLRESLRNKELMINDLKHRVEKVIHENAELKCELDSKEVLVSHYESNRYDREISYSNRLNEQLQVENDCKSQLIKDLQNKLDLANMAHQDHSVVNQLSNELLLAQEENEISKEAFLEQSDLLNDFKNQIKILSEHNEFKDDTICELRCCIRQLTECSPTNIPIRDHDHCTVTSDRGCQSIEMKTNNINSLFCCIKKYLTENRPDLLRLFDPECNAYNSLEKFIINVIGMTGKTDQNQNDIELFKEFLTNEINLKNSIIKFLASNLTGDIESLEKLQTHMNSILSLDMDRGFKNDLKNYLHNCFLLDDNLRLVIEYLVKSTNSLTHKYQALSAENLNLVEKNAMYAPNQKRDIQSIDTNSRLTSIMNFPQNDAAKSSMTSNQTDKIKTLEEEIKIMREAHQKDKKCFISELDDKNYEIQNLKEKLSDLQKIMDENARMESEFKRLNSEHKELLKNSKECQFENDRLKGEIEVLSVKNKQSDRNLQMKNSELDNLEHAMRRVSDQFANLSSTQEHVKKSIETIKDAEIERLNKEIEDLKVFKNKYNELKLLNNENSQKNSLLSKSLESLEAQINEMKNVISALQRELDKSNMEKMGLLDSIAKMEEENRKLAEELQMKTATLQLKSNQTDINNELNEAIEKLKRENQQLMKQLQQDEFQESQLRSSVNNLKIENKTMELRNNSINSDKNALENQIKQLRDRISEMNRNCEENHVSKIVVKSEADQSDMYKQKVVDLEGILVCLTDELNEKVELVDNLRKLVKNDECVIPCADPCVHDTVDINQQLLLQKDSEIAFLKSKIETLERRSINSQSKLLSLEKSQSVGDEIRNLRLELAENDKRIEYLNQQLNERSENLTNLQHLLKEKDEIIENSLKIIKVKTDALEESEKMLHSMTLENTNIKEDLSSRFQDESQLKLLNSTIKNLTNEIESLRTENDKLRLEITKLSSEKQKLSIQRKSSLPPIGLVQADNSVQQINSEIQKLYIDFEGKSNEIREYSLKEIKNRDRKIDELNLELKLKSDQFSTIMVENRRLVDKIEDESQRSSKYEQNLLLKEQILEKMLKDKEKIRATFITELHNKNEELTDKNNTVYFLNAELHRLASEIEVLNSELQVVKISDKFQVQSKNTLEITQANLENLKTENNSLRLCINLKTAELESMKNELTIKQIQNGKLSNEIEFANSKSKDLELLRRDSVKTE 1427
BLAST of SMED30008486 vs. Planmine SMEST
Match: SMESG000014085.1 (SMESG000014085.1) HSP 1 Score: 1028.47 bits (2658), Expect = 0.000e+0 Identity = 597/599 (99.67%), Postives = 599/599 (100.00%), Query Frame = 2 Query: 9482 MMGIGKTGSSLMLKSPGTELESTHQQLLTSKSTVEQLARENERLKEIVKSGSEKGQSTTMDYSFDKSKQSKIPLLKGSTIEGSVTTTQIDRKSMKWEDVNKRLLNDMTNISKNIYQITESVKPFRNTDNNAEELVQGSNEIINATTKMHQQISEIQLXXXXXXXXXXXXXXXXXLLQSAGKLVSPEEVKSAIDSETSIESLKKFACLLAEDNFDLAAEIEKLLVTIEELRRQLKENCEILSETVDMLQNSENFVNQLEKKLNIETKKTQVITTRIDKLNELNGKVILEVERILKQPPSAFTNDMNSQEKYDYLFECLKKIETXXXXXXXXXXXXXXXXMFIKSSNTYNFLGPILTGPIDFEFETSLSPNGSIEGTINMRNNDDISKKLSLTFDVRMNKDDKLQTNSKTLGHFLIEQESAHPDTRSLGYLSKKSKTDDXXXXXXXXXXXXXXSCCYGNAKFCFSKSLIDIPKLNSSFDNTHRIRVDYLNKNSTNYRSQNLQPTFNRYRMQNDFSLKIVSSADSILKFDLIEXXXXXXXXXXXXXXXXXNINLHSWKSMSSVSGCTXXXXXXXXXXXXXXRKVQFINYRKPIYFRSICDRL 11278 MMGIGKTGSSL+LKSPGTELESTHQQLLTSKSTVEQLARENERLKEIVKSGSEKGQSTTMDYSFDKSKQSKIPLLKGSTIEGSVTTTQIDRKSMKWEDVNKRLLNDMTNISKNIYQITESVKPFRNTDNNAEELVQGSNEIINATTKMHQQISEI+LSRSDHKSKKTTSSTDKSLLQSAGKLVSPEEVKSAIDSETSIESLKKFACLLAEDNFDLAAEIEKLLVTIEELRRQLKENCEILSETVDMLQNSENFVNQLEKKLNIETKKTQVITTRIDKLNELNGKVILEVERILKQPPSAFTNDMNSQEKYDYLFECLKKIETENLSLLNKKEQLENELMFIKSSNTYNFLGPILTGPIDFEFETSLSPNGSIEGTINMRNNDDISKKLSLTFDVRMNKDDKLQTNSKTLGHFLIEQESAHPDTRSLGYLSKKSKTDDNFNNNKNNCNNNNNSCCYGNAKFCFSKSLIDIPKLNSSFDNTHRIRVDYLNKNSTNYRSQNLQPTFNRYRMQNDFSLKIVSSADSILKFDLIESSNKSRFSSSSVQSSQSNINLHSWKSMSSVSGCTNNNNNNINGDCNSNRKVQFINYRKPIYFRSICDRL Sbjct: 1 MMGIGKTGSSLILKSPGTELESTHQQLLTSKSTVEQLARENERLKEIVKSGSEKGQSTTMDYSFDKSKQSKIPLLKGSTIEGSVTTTQIDRKSMKWEDVNKRLLNDMTNISKNIYQITESVKPFRNTDNNAEELVQGSNEIINATTKMHQQISEIKLSRSDHKSKKTTSSTDKSLLQSAGKLVSPEEVKSAIDSETSIESLKKFACLLAEDNFDLAAEIEKLLVTIEELRRQLKENCEILSETVDMLQNSENFVNQLEKKLNIETKKTQVITTRIDKLNELNGKVILEVERILKQPPSAFTNDMNSQEKYDYLFECLKKIETENLSLLNKKEQLENELMFIKSSNTYNFLGPILTGPIDFEFETSLSPNGSIEGTINMRNNDDISKKLSLTFDVRMNKDDKLQTNSKTLGHFLIEQESAHPDTRSLGYLSKKSKTDDNFNNNKNNCNNNNNSCCYGNAKFCFSKSLIDIPKLNSSFDNTHRIRVDYLNKNSTNYRSQNLQPTFNRYRMQNDFSLKIVSSADSILKFDLIESSNKSRFSSSSVQSSQSNINLHSWKSMSSVSGCTNNNNNNINGDCNSNRKVQFINYRKPIYFRSICDRL 599
BLAST of SMED30008486 vs. Planmine SMEST
Match: SMESG000014085.1 (SMESG000014085.1) HSP 1 Score: 1027.31 bits (2655), Expect = 0.000e+0 Identity = 596/598 (99.67%), Postives = 598/598 (100.00%), Query Frame = 2 Query: 9485 MGIGKTGSSLMLKSPGTELESTHQQLLTSKSTVEQLARENERLKEIVKSGSEKGQSTTMDYSFDKSKQSKIPLLKGSTIEGSVTTTQIDRKSMKWEDVNKRLLNDMTNISKNIYQITESVKPFRNTDNNAEELVQGSNEIINATTKMHQQISEIQLXXXXXXXXXXXXXXXXXLLQSAGKLVSPEEVKSAIDSETSIESLKKFACLLAEDNFDLAAEIEKLLVTIEELRRQLKENCEILSETVDMLQNSENFVNQLEKKLNIETKKTQVITTRIDKLNELNGKVILEVERILKQPPSAFTNDMNSQEKYDYLFECLKKIETXXXXXXXXXXXXXXXXMFIKSSNTYNFLGPILTGPIDFEFETSLSPNGSIEGTINMRNNDDISKKLSLTFDVRMNKDDKLQTNSKTLGHFLIEQESAHPDTRSLGYLSKKSKTDDXXXXXXXXXXXXXXSCCYGNAKFCFSKSLIDIPKLNSSFDNTHRIRVDYLNKNSTNYRSQNLQPTFNRYRMQNDFSLKIVSSADSILKFDLIEXXXXXXXXXXXXXXXXXNINLHSWKSMSSVSGCTXXXXXXXXXXXXXXRKVQFINYRKPIYFRSICDRL 11278 MGIGKTGSSL+LKSPGTELESTHQQLLTSKSTVEQLARENERLKEIVKSGSEKGQSTTMDYSFDKSKQSKIPLLKGSTIEGSVTTTQIDRKSMKWEDVNKRLLNDMTNISKNIYQITESVKPFRNTDNNAEELVQGSNEIINATTKMHQQISEI+LSRSDHKSKKTTSSTDKSLLQSAGKLVSPEEVKSAIDSETSIESLKKFACLLAEDNFDLAAEIEKLLVTIEELRRQLKENCEILSETVDMLQNSENFVNQLEKKLNIETKKTQVITTRIDKLNELNGKVILEVERILKQPPSAFTNDMNSQEKYDYLFECLKKIETENLSLLNKKEQLENELMFIKSSNTYNFLGPILTGPIDFEFETSLSPNGSIEGTINMRNNDDISKKLSLTFDVRMNKDDKLQTNSKTLGHFLIEQESAHPDTRSLGYLSKKSKTDDNFNNNKNNCNNNNNSCCYGNAKFCFSKSLIDIPKLNSSFDNTHRIRVDYLNKNSTNYRSQNLQPTFNRYRMQNDFSLKIVSSADSILKFDLIESSNKSRFSSSSVQSSQSNINLHSWKSMSSVSGCTNNNNNNINGDCNSNRKVQFINYRKPIYFRSICDRL Sbjct: 1 MGIGKTGSSLILKSPGTELESTHQQLLTSKSTVEQLARENERLKEIVKSGSEKGQSTTMDYSFDKSKQSKIPLLKGSTIEGSVTTTQIDRKSMKWEDVNKRLLNDMTNISKNIYQITESVKPFRNTDNNAEELVQGSNEIINATTKMHQQISEIKLSRSDHKSKKTTSSTDKSLLQSAGKLVSPEEVKSAIDSETSIESLKKFACLLAEDNFDLAAEIEKLLVTIEELRRQLKENCEILSETVDMLQNSENFVNQLEKKLNIETKKTQVITTRIDKLNELNGKVILEVERILKQPPSAFTNDMNSQEKYDYLFECLKKIETENLSLLNKKEQLENELMFIKSSNTYNFLGPILTGPIDFEFETSLSPNGSIEGTINMRNNDDISKKLSLTFDVRMNKDDKLQTNSKTLGHFLIEQESAHPDTRSLGYLSKKSKTDDNFNNNKNNCNNNNNSCCYGNAKFCFSKSLIDIPKLNSSFDNTHRIRVDYLNKNSTNYRSQNLQPTFNRYRMQNDFSLKIVSSADSILKFDLIESSNKSRFSSSSVQSSQSNINLHSWKSMSSVSGCTNNNNNNINGDCNSNRKVQFINYRKPIYFRSICDRL 598
BLAST of SMED30008486 vs. Planmine SMEST
Match: SMESG000014085.1 (SMESG000014085.1) HSP 1 Score: 602.438 bits (1552), Expect = 0.000e+0 Identity = 320/322 (99.38%), Postives = 322/322 (100.00%), Query Frame = 2 Query: 9482 MMGIGKTGSSLMLKSPGTELESTHQQLLTSKSTVEQLARENERLKEIVKSGSEKGQSTTMDYSFDKSKQSKIPLLKGSTIEGSVTTTQIDRKSMKWEDVNKRLLNDMTNISKNIYQITESVKPFRNTDNNAEELVQGSNEIINATTKMHQQISEIQLXXXXXXXXXXXXXXXXXLLQSAGKLVSPEEVKSAIDSETSIESLKKFACLLAEDNFDLAAEIEKLLVTIEELRRQLKENCEILSETVDMLQNSENFVNQLEKKLNIETKKTQVITTRIDKLNELNGKVILEVERILKQPPSAFTNDMNSQEKYDYLFECLKKIET 10447 MMGIGKTGSSL+LKSPGTELESTHQQLLTSKSTVEQLARENERLKEIVKSGSEKGQSTTMDYSFDKSKQSKIPLLKGSTIEGSVTTTQIDRKSMKWEDVNKRLLNDMTNISKNIYQITESVKPFRNTDNNAEELVQGSNEIINATTKMHQQISEI+LSRSDHKSKKTTSSTDKSLLQSAGKLVSPEEVKSAIDSETSIESLKKFACLLAEDNFDLAAEIEKLLVTIEELRRQLKENCEILSETVDMLQNSENFVNQLEKKLNIETKKTQVITTRIDKLNELNGKVILEVERILKQPPSAFTNDMNSQEKYDYLFECLKKIET Sbjct: 1 MMGIGKTGSSLILKSPGTELESTHQQLLTSKSTVEQLARENERLKEIVKSGSEKGQSTTMDYSFDKSKQSKIPLLKGSTIEGSVTTTQIDRKSMKWEDVNKRLLNDMTNISKNIYQITESVKPFRNTDNNAEELVQGSNEIINATTKMHQQISEIKLSRSDHKSKKTTSSTDKSLLQSAGKLVSPEEVKSAIDSETSIESLKKFACLLAEDNFDLAAEIEKLLVTIEELRRQLKENCEILSETVDMLQNSENFVNQLEKKLNIETKKTQVITTRIDKLNELNGKVILEVERILKQPPSAFTNDMNSQEKYDYLFECLKKIET 322 The following BLAST results are available for this feature:
BLAST of SMED30008486 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30008486 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30008486 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30008486 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30008486 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30008486 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30008486 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SMED30008486 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 0
BLAST of SMED30008486 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of SMED30008486 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30008486 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30008486 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30008486 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SMED30008486 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30008486 ID=SMED30008486|Name=SMED30008486|organism=Schmidtea mediterranea sexual|type=transcript|length=11364bpback to top protein sequence of SMED30008486-orf-1 >SMED30008486-orf-1 ID=SMED30008486-orf-1|Name=SMED30008486-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=3721bp MDRTRASSLESHKNLCDKYDSFSSSLDPSKLCRRNRFNSLVGNQTEFSDRback to top Annotated Terms
The following terms have been associated with this transcript:
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