SMED30008321
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30008321 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 13
Homology
BLAST of SMED30008321 vs. Planmine SMEST
Match: SMESG000068172.1 (SMESG000068172.1) HSP 1 Score: 1946.01 bits (5040), Expect = 0.000e+0 Identity = 982/986 (99.59%), Postives = 984/986 (99.80%), Query Frame = 3 Query: 78 MRSIFNXXXXXXXXXXXXKFSKTTLSLDIKPTKNVLKLCDHGNSSCVNELTQRFVIFNSEINQNITVKLGDLQSALPLNEKSESYNVKIFAERRGYLPPSNSNEIVINTICQFTYSLAIMSRLELDFCCRVELLIYSKSKSILNPFGVCDLSLRRDEVHCFIPIKFVYSQYLNEKILPLIGIVHKKSSGSCHFQPEPKDIYKVSKGLGISFSSRLPVIWQPTHSQKSTILIGIPLYSVKDYENLLIPVRLVSDLVDLTNQIIRINCQLDPNFVFHSVIVNSENVSIIEDPEIEDENWTIVDVKLKITPSLDQQLMFLNVTVKLDSMTKNSLKFIKVKCKIIPRNNKHKARLYDDATEVKIPLRTSNDLIILPVVKESRDIFSIYSKPNIDFQNDPLQLYIITNYRDRSVKKISSKFQMYPVDPIHLSVHSNNQSLMSMDMNYQTYLNPWSIQVQFIDNLHTLISPVRVWRPESWKLMLSDEILRPIKNWAVYQPDSEECVPRYKVARLKIMCRLFLIEETGEKRYIGTEDDDTNQIPYIDVTANTKLNQLKFYPEDIFSIEKSLNQEYFLITAKQADKSSSIKLFSEYSQTPLTSKQISADQQYISVVDLIVNCIDALSLVQQKRSKKSLNSPSYYKSITVSLTSKSPSKPCYLIVFVKFSDGSIERLSLINITQYQLSLTNPDSDMFIYKITDNQLVTVRHMPRVNMSLYEDNSCSPPRLIFSKKIEWVTVEPSNNIVPNTHPLSSTLYTTISKHKTKSSLINAVAISSINLVHISIYICTGFVACIFIGCVLFKLICYRNGHESTVEDGDGSTNYQRSASGFLEDPNLKVQVRSSNNKNFSALSKCSTNCLRQNTNKTHNNEXXXXXXXXXXXIATNYDLTLSEPICNESAVDSGIELGKLSSYSSNTCPSNDLCCTIDLYPSCSGTDDSLMHQPYQSGHFVNPMIGFYPQKGLHESEIQYQESMMLSSMNSTKNISNLRHPYW 3035 MRSIFNLIISLTILVIIIKFSKTTLSLDIKPTKNVLKLCDHGNSSCVNELTQRFVIFNSEINQNITVKLGDLQSALPLNEKSESYNVKIFAERRGYLPPSNSNEIVINTICQFTYSLAIMSRLELDFCCRVELLIYSKSKSILNPFGVCDLSLRRDEVHCFIPIKFVYSQYLNEKILPLIGIVHKKSSGSCHFQPEPKDIYKVSKGLGISFSSRLPVIWQPTHSQKSTILIGIPLYSVKDYENLLIPVRLVSDLVDLTNQIIRINCQLDPNFVFHSVIVNSENVSIIEDPEIEDENWTIVDVKLKITPSLDQQLMFLNVTVKLDSMTKNSLKFIKVKCKIIPRNNKHKARLYDDATEVKIPLRTSNDLIILPVVKESRDIFSIYSKPNIDFQNDPLQLYIITNYRDRSVKKISSKFQMYPVDPIHLSVHSNNQSLMSMDMNYQTYLNPWSIQVQFIDNLHTLISPVRVWRPESWKLMLSDEILRPIKNWAVYQPDSEECVPRYKVARLKIMCRLFLIEETGEKRYIGTEDDDTNQIPYIDVTANTKLNQ+KFYPEDIFSIEKSLNQEYFLITAKQADKSSSIKLFSEYSQTPLTSKQISADQQYISVVDLIVNCIDALSLVQQKRSKKSLNSPSYYKSITVSLTSKSPSKPCYLIVFVKFSDGSIERLSLINITQYQLSLTNPDSDMFIYKITDNQLVTVRHMPRVNMSLYEDNSCSPPRLIFSKKIEWVTVEPSNNIVPNT PLSSTLYTTISKHKTKSSLIN VAISSINLVHISIYICTGFVACIFIGCVLFKLICYRNGHESTVEDGDGSTNYQRSASGFLEDPNLKVQVRSSNNKNFSALSKCSTNCLRQNTNKTHNNEPYPPLLPPPGPIATNYDLTLSEP+CNESAVDSGIELGKLSSYSSNTCPSNDLCCTIDLYPSCSGTDDSLMHQPYQSGHFVNPMIGFYPQKGLHESEIQYQESMMLSSMNSTKNISNLRHPYW Sbjct: 1 MRSIFNLIISLTILVIIIKFSKTTLSLDIKPTKNVLKLCDHGNSSCVNELTQRFVIFNSEINQNITVKLGDLQSALPLNEKSESYNVKIFAERRGYLPPSNSNEIVINTICQFTYSLAIMSRLELDFCCRVELLIYSKSKSILNPFGVCDLSLRRDEVHCFIPIKFVYSQYLNEKILPLIGIVHKKSSGSCHFQPEPKDIYKVSKGLGISFSSRLPVIWQPTHSQKSTILIGIPLYSVKDYENLLIPVRLVSDLVDLTNQIIRINCQLDPNFVFHSVIVNSENVSIIEDPEIEDENWTIVDVKLKITPSLDQQLMFLNVTVKLDSMTKNSLKFIKVKCKIIPRNNKHKARLYDDATEVKIPLRTSNDLIILPVVKESRDIFSIYSKPNIDFQNDPLQLYIITNYRDRSVKKISSKFQMYPVDPIHLSVHSNNQSLMSMDMNYQTYLNPWSIQVQFIDNLHTLISPVRVWRPESWKLMLSDEILRPIKNWAVYQPDSEECVPRYKVARLKIMCRLFLIEETGEKRYIGTEDDDTNQIPYIDVTANTKLNQIKFYPEDIFSIEKSLNQEYFLITAKQADKSSSIKLFSEYSQTPLTSKQISADQQYISVVDLIVNCIDALSLVQQKRSKKSLNSPSYYKSITVSLTSKSPSKPCYLIVFVKFSDGSIERLSLINITQYQLSLTNPDSDMFIYKITDNQLVTVRHMPRVNMSLYEDNSCSPPRLIFSKKIEWVTVEPSNNIVPNTQPLSSTLYTTISKHKTKSSLINEVAISSINLVHISIYICTGFVACIFIGCVLFKLICYRNGHESTVEDGDGSTNYQRSASGFLEDPNLKVQVRSSNNKNFSALSKCSTNCLRQNTNKTHNNEPYPPLLPPPGPIATNYDLTLSEPVCNESAVDSGIELGKLSSYSSNTCPSNDLCCTIDLYPSCSGTDDSLMHQPYQSGHFVNPMIGFYPQKGLHESEIQYQESMMLSSMNSTKNISNLRHPYW 986
BLAST of SMED30008321 vs. Planmine SMEST
Match: SMESG000014253.1 (SMESG000014253.1) HSP 1 Score: 128.257 bits (321), Expect = 1.317e-29 Identity = 185/758 (24.41%), Postives = 326/758 (43.01%), Query Frame = 3 Query: 231 QRFVIFNSEI-NQNITVKLGDLQSALPLNEKSES-YNVKIFAERRGYLPPSNSNEIVINTICQFTYSLAIMSRLEL--DFCCRVELLIYSKSKSILNPFGVCDLSLRRDEVHCFIPIKFVYS-----QYLNEKILPLIGIVHKKSSGSCHFQPEPKDIYKVSKGLGISFSSRLPVIWQPTHSQK--STILIGIPLYSVKDYENLLIPVRLVSDLVDLTNQIIRINCQLDPNFVFHSVIVNSENVSIIEDPEIEDENWTIVDVKLK-------------ITPSLDQQLMFLNVTVKLDSMTKNSLKFIKVKCKII--PRNNKHKARLYDDATEVKIPLRTSND-LIILPVVKESRDIFSIYSKPN--IDFQNDPLQLYIITNYRDRSVKKISSKFQMYPVD------PIHLSVHSNNQSLMSMDM---NYQTYL--NPWSIQVQFIDNLHTLISPVRVWRPESWKLMLSDEILRPIKNWAVYQPDSEE----CVPRYKVARLKIMCRLFLIEETGEKRYIGTEDDDTNQIPYIDVTANTKLNQLKFYPED-IFSIEKSLNQEYFLITAKQADKSS-SIKLFSEYSQTPLTSKQISADQQYISVVDLIVNCIDALSLVQQKRSKKSLNSPSYYKSITVS-LTSKSPSKPCYLIVFVKFSDGSIERLSLINITQYQLSLTNPD--SDMFI--------YKITDNQLVTVRHMPRVNMSLYEDNSCSPPRLIFSKKIEWVTVEPSNNIVPNTHPLSSTLYTT 2333 + F N + N N+T KL D + N+ +S ++V I ++ Y + INTIC+F Y I ++ L + CCR+ + ++ + + C SL R CFI + F S + L +S C + I VSK +SFS+ L V W ++ IG P YS+ + P++L+SD + +Q+ + C + N SV + EN+ + N I+ + L+ + L +M+ +T KN L+ C+II + K+ Y + + + D II+P++K +R FSI++ N I ++D + LY I + D S +++ +D P+ + S+ D N +T + N + + ++ L +P+ +W + WKL ++ +++ I W V S CV ++ +RLK++ R+ GEK + G+ +N P++D+T+ N ++F P I S ++ ++ LI Q+D + ++L S S+ L +++ + + ++ C+ +L L Q K + S Y+ + V + K CYL + VK SD S RL I Y+ +T D S +I Y + NQL N+SLYE SC +LIF+ + + ++ S +I P T +SST+ +T Sbjct: 45 KSFAFINPAVHNFNLTTKLED---DIKDNQFIKSDFSVSIHTDKHQYYDLDKTESYTINTICKFDY---IPEKIYLFRNICCRITIQDFNFTSNDFYSIKFCKFSLSRHSSACFIDLMFQKSFIPKPSSADHFYFGLRAFAVATNSDHCTSHSDDMRILAVSKLYPLSFSNGLSVFWTNIFQSNLNFSLEIGRPFYSIDPDSFVSFPIKLISD--KMFSQM-NLQCIISENLEIKSVFFD-ENIFDAQYKIAALPNRFIITILLENKGMNYLKSSQWWVDRGLLLFIMYGRITESYMLSRKNDLRTAWASCQIINLKLQGESKSVAYTSKILQTVHIAINTDKFIIIPILK-TRYFFSIFNDINRPISLEDDFITLYSIHDVIDGSFVDVTNSAICNSIDKSSIICPLSMMKSSDQYFHTKFDNKSDNGRTRILPNKFDLILEMKTWKTVLFAPINLWVAQDWKLDINVKVINKINGWRVPVRSSVTREIICVTMFQRSRLKVLVRMVNRNTLGEKEFYGST--SSNGSPFLDITSQIPKNSIEFSPSSKIISYDEKFSE---LIVDPQSDVNDVEVRLLSVDSKRLLAIERVKIRLDKVIIANIKAFCVSSLDLFQDKS-----DIYSNYRRLHVEYILQNDTRKMCYLFIVVKLSDSSEIRLDEIPSNYYRAFITQYDYSSKHYIQVPFVVSRYILYSNQL---------NISLYESGSCRFSKLIFTGLVR-INIQHSEDI-PTT--ISSTMIST 768
BLAST of SMED30008321 vs. Planmine SMEST
Match: SMESG000036221.1 (SMESG000036221.1) HSP 1 Score: 105.145 bits (261), Expect = 1.363e-22 Identity = 170/744 (22.85%), Postives = 315/744 (42.34%), Query Frame = 3 Query: 255 EINQNITVKLGDL---QSALPLNEKSESYNVKIFAERRGYLPPSN--SNEIVINTICQFTYSLAIMSR-LELD-FCCRVELLIYSKSKSILNPFGVCDLSLRRDEVHCFIPIKFVYSQY----LNEKILPLIGIVHKKSSGSCHFQPEPKDIYKVSKGLGISFSSRLPVIWQPTHSQKS--TILIGIPLYSVKDYENLLIPVRLVSDLVDLTNQIIRINCQLDPNFVFHSVIVNSENVSIIEDPEIEDENWTIVDVKLKITPSLDQQLMFLNVTVK---LDSMTKNSLKFIKVKCKIIPRN---NKHKARLYDDATEVKIPLRTS-NDLIILPVVKES--RDIFSIYSKPNIDFQNDPLQLYIITNYRDRSVKKISSKFQMYPVDPIHLSVHSNNQSLMSMDMNYQTYLNP-WSIQVQFIDNLHTLISPVRVWRPESWKLMLSDEILRPIKNWAVYQPDSEECVPRYKVARLKIMCRLFLIEETGEKRYIGTEDDDTNQIPYIDVTANTKLNQLKFYPEDIFSIEKSLNQEYFLITAKQADKSSSIKLFSEYSQTPLTSKQISADQQYISVVDLIVNCIDALSLVQQKRSKKSLNSPSYYKSITVSLTSKSPSKPCYLIVFVKFSDGSIERLSLINITQYQLSLTN-------PDSDMFIYKITDNQLVTVRHMPRVNMSLYEDNSCSPPRLIFSKKIE-WVTVEPSNNIVPNTHPLSSTLYTTISKHKTKSSLINAVAISSIN 2393 E NI+V G+L ++ PLN Y +F ++ + SN ++ + ICQFT+ SR E + CC + L + I + C + + +D C + + + + E+ L + V G C + ++ L V W+ S S +LIG+PL S++ + P+++ S V + I C + S+ +S + + + +++ + S Q+++ L V ++ L+S+ K S +I CKII + NK K E KI ++ + I P++K S I P I+ + L++ N D S I+ + PV P L ++ S +++ + P W++ + T+ P+ +W+ + W+L +D L I W Y+ + +C P ++V R K++ RL ++ Y G + D +IP +D+T + +K + F+++ L ++ L+ + Q SS I +F +S + + I AD Q +S+VD+ V+CI + + Q S N ++K + S+ ++ CY + + F+D L T +QL L + D + FIY + + + L E C RLIF K + + + +N I P+ L S + T T++S I++++ S+N Sbjct: 50 ENKMNISVLFGNLTKTKNLEPLN-----YITNVFTDKTRFSIQSNQLTDTSTVYAICQFTHG---NSRPFEYNKVCCEMILKRLGTNSKIFDR-KYCQMDVNKDTSVCSVQFQIPHENFEFKTSTEEQLDISSRVFASQDGKCSSTAIGVSNLALGYPTKLTIMQDLLVKWKIIDSTDSFGELLIGLPLDSMEPGSKSIFPLKINSTAV---YNSLAIQCSHGRSLKLSSISFDSVRFTGTLQKITDTKKEILIEESNSLENSGGQRIVELLVYLRIHHLNSIPKKSDNWIS--CKIIQASFDKNKSKKSRKTTEKEKKISIQVNIGHFYIFPILKRSIYFSILDTVMGP-IEMGKNDLKILSAHNIGDESFSDITQTTECQPVSPSVLKCPFVRKT--SNEISKKIIRKPDWNVVLSLRSWKKTVTVPIELWQADDWRLTTTDRTLNKISGWN-YKNSNYQCEPVFQVTRCKLLARLMKDTFDSKRSYYGQSELD--KIPLLDMTPYLRKQNIKLSTNN-FNVD--LRNDFMLLQSVQIG-SSEISIFDNHS-SKIAFDFIQADAQEVSIVDMEVSCIHDVHINQTINS----NDLPFHKILVSQRLSEDSTQACYFQILLTFNDNKKSNLLDYKFTNFQLKLIHTERSIDIKDLESFIYYPSQ-----YKEPGKFIFQLLESTEC-LFRLIFQKDVNIYENTKSTNPIDPS---LQSPIITKSQSTSTETSKISSLSTKSLN 755
BLAST of SMED30008321 vs. Planmine SMEST
Match: SMESG000016285.1 (SMESG000016285.1) HSP 1 Score: 88.9669 bits (219), Expect = 1.287e-17 Identity = 95/362 (26.24%), Postives = 162/362 (44.75%), Query Frame = 3 Query: 1410 YLNPWSIQVQFIDNLHTLISPV-RVWRPESWKLMLSDEILRPIKNWAVYQPDSEECVPRYKVARLKIMCRLFLIEETGEKRYIGTEDDDTNQIPYIDVTANTKLNQL-KFYPEDIFSIEKSLNQEYFLITAKQADKSSSIKLFSEYSQTPLTSKQISA-DQQYISVVDLIVNCIDALSLVQQKRSKKSLNSPSYYKSITVSLTSKSPSKPCYLIVFVKFSDGSIERLSLINITQYQLSLTNPDSDMFIYKITDNQLVTVRHMPRVNMSLYEDNSCSPPRLIFSKKI----EWVTVEPSNNIVPNT-HPLSSTLYTTISKHKTKSSLINAVAISSINLVHISIYICTGFVACIFIGCVLFKLI 2471 + + W + V+ I++ T++ + VW+PESWKL LSD L PI +W VY+ ++ CV Y+ A LKI RL G + Y+G D P++DV+ T ++ L P ++ S ++ N+ L+ K +++ + I L + L +IS + SVV C+ L L + S+ N + + + + + + C L + V F+D S L + Y+L + + + LV R R+N+ LY C+ + + I +W+ ++ +P T P+ +T T S KSS I N I++Y G VA + +L LI Sbjct: 425 FTDSWVLPVE-IEHWRTVVFNIFNVWKPESWKLYLSDTELNPISDWKVYR--NKSCVFLYQSAVLKIATRLAYFNSFGIRTYLGATFKDAK--PWVDVSKETDISSLITTKPSEVVSFSRN-NRGSILVDVK-SNQRTVISLVDRRNNL-LADTEISVFSDHWASVVRFYGRCLSQLDLHE---SQSHPNGEGKFYNYNLKMRKLALGEKCRLYLGVVFNDNSEMLLEDVAPEDYRLEVDG-------MEFRNGDLVNFRL--RINIGLYGSPQCALASAVRTGTIDLSSDWIISRDAHIDIPGTPRPIVTTETITESPKTKKSS---ETFIEPRNSFSIAVYCIVGIVAMAVVILLLNCLI 763
BLAST of SMED30008321 vs. Planmine SMEST
Match: SMESG000014253.1 (SMESG000014253.1) HSP 1 Score: 64.3142 bits (155), Expect = 3.380e-10 Identity = 72/263 (27.38%), Postives = 125/263 (47.53%), Query Frame = 3 Query: 1584 YKVARLKIMCRLFLIEETGEKRYIGTEDDDTNQIPYIDVTANTKLNQLKFYPED-IFSIEKSLNQEYFLITAKQADKSS-SIKLFSEYSQTPLTSKQISADQQYISVVDLIVNCIDALSLVQQKRSKKSLNSPSYYKSITVS-LTSKSPSKPCYLIVFVKFSDGSIERLSLINITQYQLSLTNPD--SDMFI--------YKITDNQLVTVRHMPRVNMSLYEDNSCSPPRLIFSKKIEWVTVEPSNNIVPNTHPLSSTLYTT 2333 ++ +RLK++ R+ GEK + G+ +N P++D+T+ N ++F P I S ++ ++ LI Q+D + ++L S S+ L +++ + + ++ C+ +L L Q K + S Y+ + V + K CYL + VK SD S RL I Y+ +T D S +I Y + NQL N+SLYE SC +LIF+ + + ++ S +I P T +SST+ +T Sbjct: 2 FQRSRLKVLVRMVNRNTLGEKEFYGSTS--SNGSPFLDITSQIPKNSIEFSPSSKIISYDEKFSE---LIVDPQSDVNDVEVRLLSVDSKRLLAIERVKIRLDKVIIANIKAFCVSSLDLFQDKS-----DIYSNYRRLHVEYILQNDTRKMCYLFIVVKLSDSSEIRLDEIPSNYYRAFITQYDYSSKHYIQVPFVVSRYILYSNQL---------NISLYESGSCRFSKLIFTGLVR-INIQHSEDI-PTT--ISSTMIST 241 The following BLAST results are available for this feature:
BLAST of SMED30008321 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30008321 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30008321 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30008321 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30008321 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30008321 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30008321 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SMED30008321 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 0
BLAST of SMED30008321 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of SMED30008321 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30008321 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30008321 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30008321 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SMED30008321 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30008321 ID=SMED30008321|Name=SMED30008321|organism=Schmidtea mediterranea sexual|type=transcript|length=3250bpback to top protein sequence of SMED30008321-orf-1 >SMED30008321-orf-1 ID=SMED30008321-orf-1|Name=SMED30008321-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=987bp MRSIFNLIISLTILVIIIKFSKTTLSLDIKPTKNVLKLCDHGNSSCVNELback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
|