SMED30008236
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30008236 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 5
Alignments
SMED30008236 aligns in the following genomic locations:
Homology
BLAST of SMED30008236 vs. TrEMBL
Match: A0A1I8GLP2 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 9.093e-9 Identity = 44/124 (35.48%), Postives = 67/124 (54.03%), Query Frame = 1 Query: 301 FRSVILDEWS-ALRPSGMNVTIRAVNNA--IVGWLNFRVSAQD---NIISWFTLGNLLDSFPWDINVLKNSLYTFFSVTGDRKGLRSFFISIRYNGCTGDVGVLMMFDGRDACSYNLK-WITSA 651 +RS +LD A++ SG + + +V + F VS N +WFT ++ SFP++ LK + + FFS G + R+FFI+ RY GC GDVG ++ D +D CS++ K W SA Sbjct: 900 YRSKLLDTLPFAVKRSGYGKIVAEMRTGSKVVAQVVFDVSTNTKKLNFQNWFTRTRMVSSFPYE---LKKTGFNFFSFAGHQAHKRTFFINNRYRGCGGDVGFWVVSDRKDVCSWDNKGWHGSA 1020 HSP 2 Score: 66.6254 bits (161), Expect = 1.456e-8 Identity = 37/107 (34.58%), Postives = 61/107 (57.01%), Query Frame = 1 Query: 382 IVGWLNFRVSAQD---NIISWFTLGNLLDSFPWDINVLKNSLYTFFSVTGDRKGLRSFFISIRYNGCTGDVGVLMMFDGRDACSYNLK-WITSAINYPQIFYAVLNG 690 +V L F VS N+++WF+ L+ SFP++I + + +FS+ G + R+FF++ Y GC GD G M+ D +D CS+ K W SA P++ Y+ ++G Sbjct: 725 VVAQLVFDVSTNKKTLNLMNWFSPTRLVSSFPYEIG---KTGFNYFSMAGHKALKRTFFVNYVYRGCPGDTGFWMIADKKDVCSWAKKGWKGSA---PELVYSQVSG 825 HSP 3 Score: 65.0846 bits (157), Expect = 5.002e-8 Identity = 34/93 (36.56%), Postives = 52/93 (55.91%), Query Frame = 1 Query: 421 NIISWFTLGNLLDSFPWDINVLKNSLYTFFSVTGDRKGLRSFFISIRYNGCTGDVGVLMMFDGRDACSYNLK-WITSAINYPQIFYAVLNGSP 696 N +WFT ++ SFP+ LK + + +FS G + R+FFIS RY GC GD+G ++ D +D C ++ K W +S P + Y + G P Sbjct: 1151 NFQNWFTPARMVSSFPYK---LKKTGFNYFSFAGHQAHKRTFFISNRYRGCGGDIGFWVISDRKDVCKWSNKGWHSSG---PVLVYTQVPGVP 1237 HSP 4 Score: 62.003 bits (149), Expect = 4.493e-7 Identity = 33/77 (42.86%), Postives = 44/77 (57.14%), Query Frame = 1 Query: 424 IISWFTLGNLLDSFPWDINVLKNSLYTFFSVTGDRKGLRSFFISIRYNGCTGDVGVLMMFDGRDACSY-NLKWITSA 651 + +WFT L+ S+P+ L + Y +FSV G R RSFFI+ Y GC GD+G M+ D RD C + N W SA Sbjct: 1542 MTNWFTPTRLVSSYPYH---LGKTGYNYFSVAGHRAHKRSFFINKVYAGCAGDLGFWMVSDRRDPCKWANKGWSGSA 1615
BLAST of SMED30008236 vs. TrEMBL
Match: A0A1I8GIN4 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 1.425e-8 Identity = 39/115 (33.91%), Postives = 63/115 (54.78%), Query Frame = 1 Query: 373 NNAIVGWLNFRVSAQD---NIISWFTLGNLLDSFPWDINVLKNSLYTFFSVTGDRKGLRSFFISIRYNGCTGDVGVLMMFDGRDACSYNLK-WITSAINYPQIFYAVLNGSPAIF 705 + +V L F VS N+++WF+ L+ SFP++I + + +FS+ G + R+FF++ Y GC GD G M+ D +D CS+ K W SA P++ Y+VL S + Sbjct: 288 HGRVVAQLVFDVSTNKKTLNLMNWFSPTRLVSSFPYEIG---KTGFNYFSMAGHKALKRTFFVNYVYRGCPGDTGFWMIADKKDVCSWAKKGWKGSA---PELVYSVLKYSQPFY 396 HSP 2 Score: 63.929 bits (154), Expect = 1.062e-7 Identity = 46/139 (33.09%), Postives = 69/139 (49.64%), Query Frame = 1 Query: 301 FRSVILDEWS-ALRPSGMN--VTIRAVNNAIVGWLNFRVSAQD---NIISWFTLGNLLDSFPWDINVLKNSLYTFFSVTGDRKGLRSFFISIRYNGCTGDVGVLMMFDGRDACSY-NLKWITSAINYPQIFYAVLNGSP 696 +RS LD + A+ SG V + +V + F VS N +WFT ++ SFP+ LK + + +FS G + R+FFIS RY GC GD+G ++ D +D C + N W +S P + Y + G P Sbjct: 564 YRSDQLDTLANAVERSGFKHIVAEMRAGSRVVAQVVFDVSINTKSLNFQNWFTPARMVSSFPYK---LKKTGFNYFSFAGHQAHKRTFFISNRYRGCGGDIGFWVISDRKDVCKWSNKGWHSSG---PVLVYTQVPGVP 696 HSP 3 Score: 58.5362 bits (140), Expect = 5.832e-6 Identity = 35/92 (38.04%), Postives = 51/92 (55.43%), Query Frame = 1 Query: 421 NIISWFTLGNLLDSFPWDINVLKNSLYTFFSVTGDRKGLRSFFISIRYN-GCTGDVGVLMMFDGRDACSYNLK-WITSAINYPQIFYAVLNG 690 N+++WF+ L+ S+P+ L S Y +FSV G + R+FFI+ Y GC GD+G ++ D RD C + K W SA P + Y L G Sbjct: 815 NMVNWFSKSRLVSSYPYQ---LGKSGYNYFSVAGHQAYKRTFFINSVYKAGCAGDIGFWVVSDRRDPCKWAYKGWHGSA---PALIYTRLPG 900
BLAST of SMED30008236 vs. TrEMBL
Match: A0A1I8GLC5 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 1.525e-8 Identity = 44/124 (35.48%), Postives = 67/124 (54.03%), Query Frame = 1 Query: 301 FRSVILDEWS-ALRPSGMNVTIRAVNNA--IVGWLNFRVSAQD---NIISWFTLGNLLDSFPWDINVLKNSLYTFFSVTGDRKGLRSFFISIRYNGCTGDVGVLMMFDGRDACSYNLK-WITSA 651 +RS +LD A++ SG + + +V + F VS N +WFT ++ SFP++ LK + + FFS G + R+FFI+ RY GC GDVG ++ D +D CS++ K W SA Sbjct: 466 YRSKLLDTLPFAVKRSGYGKIVAEMRTGSKVVAQVVFDVSTNTKKLNFQNWFTRTRMVSSFPYE---LKKTGFNFFSFAGHQAHKRTFFINNRYRGCGGDVGFWVVSDRKDVCSWDNKGWHGSA 586 HSP 2 Score: 65.0846 bits (157), Expect = 5.101e-8 Identity = 37/110 (33.64%), Postives = 62/110 (56.36%), Query Frame = 1 Query: 373 NNAIVGWLNFRVSAQD---NIISWFTLGNLLDSFPWDINVLKNSLYTFFSVTGDRKGLRSFFISIRYNGCTGDVGVLMMFDGRDACSYNLK-WITSAINYPQIFYAVLNG 690 + +V L F VS N+++WF+ L+ SFP++I + + +FS+ G + R+FF++ Y GC GD G M+ D +D CS+ K W SA P++ Y+ ++G Sbjct: 288 HGRVVAQLVFDVSTNKKTLNLMNWFSPTRLVSSFPYEIG---KTGFNYFSMAGHKALKRTFFVNYVYRGCPGDTGFWMIADKKDVCSWAKKGWKGSA---PELVYSQVSG 391 HSP 3 Score: 63.5438 bits (153), Expect = 1.456e-7 Identity = 46/139 (33.09%), Postives = 69/139 (49.64%), Query Frame = 1 Query: 301 FRSVILDEWS-ALRPSGMN--VTIRAVNNAIVGWLNFRVSAQD---NIISWFTLGNLLDSFPWDINVLKNSLYTFFSVTGDRKGLRSFFISIRYNGCTGDVGVLMMFDGRDACSY-NLKWITSAINYPQIFYAVLNGSP 696 +RS LD + A+ SG V + +V + F VS N +WFT ++ SFP+ LK + + +FS G + R+FFIS RY GC GD+G ++ D +D C + N W +S P + Y + G P Sbjct: 671 YRSDQLDTLANAVERSGFKHIVAEMRAGSRVVAQVVFDVSINTKSLNFQNWFTPARMVSSFPYK---LKKTGFNYFSFAGHQAHKRTFFISNRYRGCGGDIGFWVISDRKDVCKWSNKGWHSSG---PVLVYTQVPGVP 803 HSP 4 Score: 60.4622 bits (145), Expect = 1.441e-6 Identity = 33/84 (39.29%), Postives = 46/84 (54.76%), Query Frame = 1 Query: 403 RVSAQDNIISWFTLGNLLDSFPWDINVLKNSLYTFFSVTGDRKGLRSFFISIRYNGCTGDVGVLMMFDGRDACSY-NLKWITSA 651 R + + +WFT L+ S+P+ L + Y +FSV G R R+FFI+ Y GC GD+G M+ D RD C + N W SA Sbjct: 1089 RHTKSVGMTNWFTPTRLVSSYPYH---LGKTGYNYFSVAGHRAHKRTFFINKVYAGCAGDLGFWMVSDRRDPCKWANKGWSGSA 1169
BLAST of SMED30008236 vs. TrEMBL
Match: A0A0L8H6T8 (Uncharacterized protein OS=Octopus bimaculoides OX=37653 GN=OCBIM_22021012mg PE=4 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 1.631e-8 Identity = 53/197 (26.90%), Postives = 88/197 (44.67%), Query Frame = 1 Query: 106 YIPKAISAQPTQSSPTKIIYQRIENTITVLRIVNGSGVYPPDFLSKLSNPSTYKVKDIQNNYSENF-RSVILDEWSALRPSGMNVTIRAVNNAIVGWLNFRVSAQDNII-SWFTLGNLLDSFPW-DINVLKNSLYTFFSVTGDRKGLRSFFISIRYNGCTGDVGVLMMFDGRDACSYNLKWITSAINYPQIFYAVLN 687 Y PK + + + +I + R I V + G+G D + +PS++ V+ + NF R ILD WS L + I A+V N ++ + SWF+L L S PW D++ ++++ F +R F++S Y GC GD G +++ + R C Y +YPQ+ Y+ N Sbjct: 89 YSPKNLMTVVSTNDSNEISFYRNTQWIKVYALSMGAGSKVYDSFANKGSPSSWNVEKCIGTFCPNFFRHPILDVWSHLPIDEAKLVIYENQTAVV---NMVFDGRNTTLESWFSLETLKSS-PWPDLHQQPVNIFSLFGA-----AIRRFYVSSEYGGCVGDWGWMLIAEARHMCYYE-----QLSSYPQLLYSKRN 271
BLAST of SMED30008236 vs. TrEMBL
Match: A0A1I8G660 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 2.844e-8 Identity = 43/140 (30.71%), Postives = 73/140 (52.14%), Query Frame = 1 Query: 301 FRSVILDEW-SALRPSGMN---VTIRAVNNAIVGWLNFRVSAQDNII---SWFTLGNLLDSFPWDINVLKNSLYTFFSVTGDRKGLRSFFISIRYNGCTGDVGVLMMFDGRDACSYNLK-WITSAINYPQIFYAVLNGSP 696 +RS ++DE A+R SGM V +R +N +V + F VS + +WF+ L S+P+ ++ + +FS+ G+R R F+I+ ++GC + G +++ D R C Y + W SA P + Y+ L G P Sbjct: 474 YRSDLIDELPRAVRQSGMTKMVVEMRKDDNQVVSQVVFDVSTDTEKLDKENWFSELRLESSYPYSVD---RKEFNYFSLEGERSSKRRFYINNWHHGCHRETGFILVSDARGHCDYVTRGWRGSA---PTLIYSRLPGKP 607 HSP 2 Score: 63.1586 bits (152), Expect = 2.169e-7 Identity = 49/164 (29.88%), Postives = 79/164 (48.17%), Query Frame = 1 Query: 301 FRSVILDEW-SALRPSGMNVTIRAV--NNAIVGWLNFRVSAQDNII---SWFTLGNLLDSFPWDINVLKNSLYTFFSVTGDRKGLRSFFISIRYNGCTGDVGVLMMFDGRDACSYNLKWITSAINYPQIFYAVLNGSPAIFYNYIRSAKSLEIIGSYPSDILIY 774 +RS ++DE A+R SGM + + +N +V + F VS + + +WF+L L S+P+ I+ + +FS+ GD R F+IS Y GCT D G +M+ D R +C W+T P++ YN + E +G Y ++IY Sbjct: 884 YRSDLIDELPRAVRQSGMTKMVVEMRKDNKVVSQVAFDVSTDTDKLDKENWFSLLRLYSSYPYPIS---RKEFNYFSLEGD--ASRKFYISNHYGGCTRDSGFIMVSDSRGSCD----WVTRGWR---------GSPPSLAYNREQGRSFHESVG-YADRLIIY 1028 HSP 3 Score: 63.1586 bits (152), Expect = 2.169e-7 Identity = 49/164 (29.88%), Postives = 79/164 (48.17%), Query Frame = 1 Query: 301 FRSVILDEW-SALRPSGMNVTIRAV--NNAIVGWLNFRVSAQDNII---SWFTLGNLLDSFPWDINVLKNSLYTFFSVTGDRKGLRSFFISIRYNGCTGDVGVLMMFDGRDACSYNLKWITSAINYPQIFYAVLNGSPAIFYNYIRSAKSLEIIGSYPSDILIY 774 +RS ++DE A+R SGM + + +N +V + F VS + + +WF+L L S+P+ I+ + +FS+ GD R F+IS Y GCT D G +M+ D R +C W+T P++ YN + E +G Y ++IY Sbjct: 1291 YRSDLIDELPRAVRQSGMTKMVVEMRKDNKVVSQVAFDVSTDTDKLDKENWFSLLRLYSSYPYPIS---RKEFNYFSLEGD--ASRKFYISNHYGGCTRDSGFIMVSDSRGSCD----WVTRGWR---------GSPPSLAYNREQGRSFHESVG-YADRLIIY 1435 HSP 4 Score: 63.1586 bits (152), Expect = 2.169e-7 Identity = 49/164 (29.88%), Postives = 79/164 (48.17%), Query Frame = 1 Query: 301 FRSVILDEW-SALRPSGMNVTIRAV--NNAIVGWLNFRVSAQDNII---SWFTLGNLLDSFPWDINVLKNSLYTFFSVTGDRKGLRSFFISIRYNGCTGDVGVLMMFDGRDACSYNLKWITSAINYPQIFYAVLNGSPAIFYNYIRSAKSLEIIGSYPSDILIY 774 +RS ++DE A+R SGM + + +N +V + F VS + + +WF+L L S+P+ I+ + +FS+ GD R F+IS Y GCT D G +M+ D R +C W+T P++ YN + E +G Y ++IY Sbjct: 1698 YRSDLIDELPRAVRQSGMTKMVVEMRKDNKVVSQVAFDVSTDTDKLDKENWFSLLRLYSSYPYPIS---RKEFNYFSLEGD--ASRKFYISNHYGGCTRDSGFIMVSDSRGSCD----WVTRGWR---------GSPPSLAYNREQGRSFHESVG-YADRLIIY 1842
BLAST of SMED30008236 vs. Planmine SMEST
Match: SMESG000076267.1 (SMESG000076267.1) HSP 1 Score: 518.079 bits (1333), Expect = 0.000e+0 Identity = 254/259 (98.07%), Postives = 254/259 (98.07%), Query Frame = 1 Query: 1 VWFSGKKGDPLDEMRCGLKAFDRNIIYFAMVNKSCYIPKAISAQPTQSSPTKIIYQRIENTITVLRIVNGSGVYPPDFLSKLSNPSTYKVKDIQNNYSENFRSVILDEWSALRPSGMNVTIRAVNNAIVGWLNFRVSAQDNIISWFTLGNLLDSFPWDINVLKNSLYTFFSVTGDRKGLRSFFISIRYNGCTGDVGVLMMFDGRDACSYNLKWITSAINYPQIFYAVLNGSPAIFYNYIRSAKSLEIIGSYPSDILIYG 777 VWFSGKKGDPLDEMRCGLKAFDRNIIYFAMVNKSCYIPKAISAQPTQSSPTKIIYQRIENTITVLRIVNGSGVYPPDFLSKLSNPSTYKVKDIQNNYSENFRSVILDEWS LRPSGMNVTIRAVN AIVGWLNFRVSAQDNIISWFTLGNLLDSFPWDINVLKNSLY FFSVTGDRKGLRSFFISIRYNGCTGD GVLMMFDG DACSYNLKWITSAINYPQIFYAVLNGSPAIFYNYIRSAKSLEIIGSYPSDILIYG Sbjct: 11 VWFSGKKGDPLDEMRCGLKAFDRNIIYFAMVNKSCYIPKAISAQPTQSSPTKIIYQRIENTITVLRIVNGSGVYPPDFLSKLSNPSTYKVKDIQNNYSENFRSVILDEWSTLRPSGMNVTIRAVNKAIVGWLNFRVSAQDNIISWFTLGNLLDSFPWDINVLKNSLYKFFSVTGDRKGLRSFFISIRYNGCTGDAGVLMMFDGSDACSYNLKWITSAINYPQIFYAVLNGSPAIFYNYIRSAKSLEIIGSYPSDILIYG 269
BLAST of SMED30008236 vs. Planmine SMEST
Match: SMESG000076443.1 (SMESG000076443.1) HSP 1 Score: 282.722 bits (722), Expect = 2.132e-95 Identity = 138/271 (50.92%), Postives = 186/271 (68.63%), Query Frame = 1 Query: 22 GDPLDEMRCGLKAFDRNIIYFAMVNKSCYIPKAISAQPTQSSPT--------------------KIIYQRIENTITVLRIVNGSGVYPPDFLSKLSNPSTYKVKDIQNNYSENFRSVILDEWSALRPSGMNVTIRAVNNAIVGWLNFRVSAQDNIISWFTLGNLLDSFPWDINVLKNSLYTFFSVTGDRKGLRSFFISIRYNGCTGDVGVLMMFDGRDACSYNLKWITSAINYPQIFYAVLNGSPAIFYNYIRSAKSLEIIGSYPSDILIY 774 GD ++ C L+ F + + YF++V+ C+ P QPTQ + + K +Y+++ NT+ +LRIVNGSGVYPPD+L+ +NPS Y VKD + N+SENFRS++LD+W +PS +NVTIR V++ VGWL F V +DNI+SWF NL+DSFPW+INVLKNS Y +FS+ GD+ RSF ++ +Y GC DVGVLMMFDG + C+Y L W+TSA YPQI YA LNGSP+ + NY+R AKSLEIIG+YPS+I I+ Sbjct: 17 GDSVEFADCILQTFQKKLTYFSIVDNLCFTP----TQPTQPTKSTQPTQSTQTTQSTQSTFTTTKAVYRKMGNTLILLRIVNGSGVYPPDYLANTTNPSPYGVKDYKRNFSENFRSILLDDWKRYQPSNLNVTIRDVSDVEVGWLYFSVFPKDNILSWFASTNLIDSFPWNINVLKNSTYNYFSINGDKTYNRSFLVNSQYGGCPNDVGVLMMFDGHNVCNYRLTWLTSATEYPQIIYAELNGSPSNYNNYVRVAKSLEIIGTYPSNIGIF 283
BLAST of SMED30008236 vs. Planmine SMEST
Match: SMESG000034377.1 (SMESG000034377.1) HSP 1 Score: 280.796 bits (717), Expect = 1.181e-94 Identity = 137/271 (50.55%), Postives = 186/271 (68.63%), Query Frame = 1 Query: 22 GDPLDEMRCGLKAFDRNIIYFAMVNKSCYIPKAISAQPTQSSPT--------------------KIIYQRIENTITVLRIVNGSGVYPPDFLSKLSNPSTYKVKDIQNNYSENFRSVILDEWSALRPSGMNVTIRAVNNAIVGWLNFRVSAQDNIISWFTLGNLLDSFPWDINVLKNSLYTFFSVTGDRKGLRSFFISIRYNGCTGDVGVLMMFDGRDACSYNLKWITSAINYPQIFYAVLNGSPAIFYNYIRSAKSLEIIGSYPSDILIY 774 GD ++ C L+ F + + YF++V+ C+ P QPTQ + + K +Y+++ NT+ +LRIVNGSGVYPPD+L+ +NPS Y VKD + N+SENFRS++LD+W +PS +NVTIR V++ VGWL F V +DNI+SWF NL+DSFPW+INVLKNS Y +FS+ GD+ RSF ++ +Y GC DVGVLM+FDG + C+Y L W+TSA YPQI YA LNGSP+ + NY+R AKSLEIIG+YPS+I I+ Sbjct: 17 GDSVEFADCILQTFQKKLTYFSIVDNLCFTP----TQPTQPTKSTQPTQSTQTTQSTQSTFTTTKAVYRKMGNTLILLRIVNGSGVYPPDYLANTTNPSPYGVKDYKRNFSENFRSILLDDWKRYQPSNLNVTIRDVSDVEVGWLYFSVFPKDNILSWFASTNLIDSFPWNINVLKNSTYNYFSINGDKTYNRSFLVNSQYGGCPNDVGVLMVFDGHNVCNYQLMWLTSATEYPQIIYAELNGSPSNYNNYVRVAKSLEIIGTYPSNIGIF 283
BLAST of SMED30008236 vs. Planmine SMEST
Match: SMESG000034379.1 (SMESG000034379.1) HSP 1 Score: 273.863 bits (699), Expect = 8.436e-93 Identity = 137/229 (59.83%), Postives = 163/229 (71.18%), Query Frame = 1 Query: 88 MVNKSCYIPKAISAQPTQSSPTKIIYQRIENTITVLRIVNGSGVYPPDFLSKLSNPSTYKVKDIQNNYSENFRSVILDEWSALRPSGMNVTIRAVNNAIVGWLNFRVSAQDNIISWFTLGNLLDSFPWDINVLKNSLYTFFSVTGDRKGLRSFFISIRYNGCTGDVGVLMMFDGRDACSYNLKWITSAINYPQIFYAVLNGSPAIFYNYIRSAKSLEIIGSYPSDILIY 774 MVN CY P A SAQ T S + IY+R+ N +T+LRIVNGSGVYPP +LS + P Y+VK+ + NYS NFRS++LDEWS LRPS MNVTI+ V++ IVGWL F V+A DNI SWF LGNLL+SFPWD N+LK Y FFS+ GDR RSFFI Y GC DVGVLM+FD DAC Y L WI YPQI YAV NG PA++ + +R AKSLEIIG Y ++ IY Sbjct: 1 MVNNICYTPTAASAQSTLIS-NENIYRRVSNILTLLRIVNGSGVYPPGYLSNMIYPPQYEVKERKGNYSMNFRSILLDEWSTLRPSYMNVTIKDVDDVIVGWLYFVVNASDNISSWFILGNLLNSFPWDTNMLKTKTYNFFSIVGDRTLFRSFFIHSYYGGCDADVGVLMIFDAPDACEYGLAWIVQLNKYPQIIYAVKNGMPALYNDNVRQAKSLEIIGVYSQNVEIY 228
BLAST of SMED30008236 vs. Planmine SMEST
Match: SMESG000034462.1 (SMESG000034462.1) HSP 1 Score: 266.929 bits (681), Expect = 4.591e-90 Identity = 134/229 (58.52%), Postives = 161/229 (70.31%), Query Frame = 1 Query: 88 MVNKSCYIPKAISAQPTQSSPTKIIYQRIENTITVLRIVNGSGVYPPDFLSKLSNPSTYKVKDIQNNYSENFRSVILDEWSALRPSGMNVTIRAVNNAIVGWLNFRVSAQDNIISWFTLGNLLDSFPWDINVLKNSLYTFFSVTGDRKGLRSFFISIRYNGCTGDVGVLMMFDGRDACSYNLKWITSAINYPQIFYAVLNGSPAIFYNYIRSAKSLEIIGSYPSDILIY 774 MVN CY P A SAQ T S + IY+R+ N +T+LRIVNGSGVYPP +LS + P Y+VK+ + NYS NFRS++LDEWS LRPS MNVTI+ V++ IVGWL F V++ DNI SWF L NLL+SFPWD N+LK Y FFS+ GDR RSFFI Y GC DVGVLM+FD D C Y L WI YPQI YAV NG PA++ + +R AKSLEIIG Y ++ IY Sbjct: 1 MVNNICYTPTAASAQSTLIS-NENIYRRVSNILTLLRIVNGSGVYPPGYLSNMIYPPQYEVKERKGNYSMNFRSILLDEWSTLRPSYMNVTIKDVDDVIVGWLYFVVNSSDNISSWFILDNLLNSFPWDTNMLKTKTYNFFSIVGDRTLFRSFFIHSYYGGCHIDVGVLMIFDAPDVCEYGLAWIVQLNKYPQIIYAVKNGMPALYNDNVRQAKSLEIIGVYSQNVEIY 228 The following BLAST results are available for this feature:
BLAST of SMED30008236 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30008236 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30008236 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30008236 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30008236 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30008236 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30008236 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SMED30008236 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30008236 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of SMED30008236 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30008236 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30008236 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30008236 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SMED30008236 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30008236 ID=SMED30008236|Name=SMED30008236|organism=Schmidtea mediterranea sexual|type=transcript|length=827bpback to top protein sequence of SMED30008236-orf-1 >SMED30008236-orf-1 ID=SMED30008236-orf-1|Name=SMED30008236-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=260bp VWFSGKKGDPLDEMRCGLKAFDRNIIYFAMVNKSCYIPKAISAQPTQSSPback to top Annotated Terms
The following terms have been associated with this transcript:
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