SMED30008229

Overview
NameSMED30008229
Smed IDSMED30008229
Length (bp)778
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30008229 (SMED30008229) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30008229 (SMED30008229) in cells (dots) of each of the 12 neoblast clusters.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30008229

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 8

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30008229h1SMcG0016717 SmedASXL_016521SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
pharynxSMED30008229h1SMcG0016717 dd_Smed_v4_14890_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30008229h1SMcG0016717 dd_Smed_v4_14890_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30008229h1SMcG0016717 dd_Smed_v6_14890_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
reproductive organSMED30008229h1SMcG0016717 Contig50240newmark_estsPMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
epidermisSMED30008229h1SMcG0016717 dd_Smed_v4_14890_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
pharynxSMED30008229h1SMcG0016717 dd_Smed_v6_14890_0_1dd_Smed_v6PMID:29291974
Strand et al., 2018		whole organism asexual adult colorimetric in situ hybridization evidence
nervous systemSMED30008229h1SMcG0016717 dd_Smed_v6_14890_0_1dd_Smed_v6PMID:29291974
Strand et al., 2018		whole organism asexual adult colorimetric in situ hybridization evidence
Note: Hover over icons to view figure legend
Alignments
SMED30008229 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.001967:664..2668 -2974
Homology
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BLAST of SMED30008229 vs. Ensembl Zebrafish
Match: fbxl13 (F-box and leucine-rich repeat protein 13 [Source:ZFIN;Acc:ZDB-GENE-140106-120])

HSP 1 Score: 63.5438 bits (153), Expect = 4.782e-11
Identity = 45/152 (29.61%), Postives = 80/152 (52.63%), Query Frame = -1 
Query:  239 YVDKGRLTQIYESLICGLCVMKPKKPQLWILDK-LRLIRTMDYDDLQWNTFIDEWMRPKHPFVIETILSFIFKSNDEYQPTIEMLSIAYSAYNRSIISRCFNAWVIYHVSKKKRHGNE-SKLEEIALFHYQVKWISRIFIAWKLWTVHRLQR 688
            Y+ K  L QIY++L+ GLCV  P+ P  ++ +K L +++  D++ + W+TFID+    +   +   I+++IF   ++      +L  AY+ Y+ ++   CF  W  Y   KK +      ++EE  ++H Q + I   FI W  W   + QR
Sbjct:   14 YIIKHSLPQIYKALLSGLCVSCPEDPLHFMEEKILSILQDQDFE-IVWHTFIDK--DKQISSLAGGIVNYIFGYPEDSLNLSHLLEKAYTCYHTNLTKMCFTGWKSYIWQKKMKAARLLERMEEAEMYHTQ-RRIKLAFIKWTAWVQFQKQR 161
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BLAST of SMED30008229 vs. TrEMBL
Match: A0A4Z2DTX9 (F-box/LRR-repeat protein (Fragment) OS=Schistosoma japonicum OX=6182 GN=EWB00_005971 PE=4 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.729e-23
Identity = 56/158 (35.44%), Postives = 92/158 (58.23%), Query Frame = -1 
Query:  257 PLLLKYVDKGRLTQIYESLICGLCVMKPKKPQLWILDKLRLIRTMDYDDLQWNTFIDEWMRPKHPFVIETILSFIFKSND---------EYQPTIEMLSIAYSAYNRSIISRCFNAWVIYHVSKKKRHGNESKLEEIALFHYQVKWISRIFIAWKLWT 703
            P L+KY  K  L +++E+L+ GL VM P  P+ WI +KL+L+  + +  L W+TFID  M+P HP+V   ++  +F ++          +YQPT EM++ AY+A  +SI+ +C +AW +Y + K+ R  +  K+  IA    + +    IF  WK +T
Sbjct:   12 PNLIKYTRKHHLYEVFEALLGGLSVMLPTNPRRWIAEKLQLLYDIGFISLNWDTFIDPDMKPTHPYVDHELMHSLFGTSKLEFLLPEELQYQPTPEMIAKAYAAQKQSILKKCLSAWKLYFIVKRARTTHICKINFIAEMTRKCRLKKTIFQTWKEYT 169
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BLAST of SMED30008229 vs. TrEMBL
Match: A0A3R7F818 (F-box/LRR-repeat protein 13 OS=Clonorchis sinensis OX=79923 GN=Fbxl13 PE=4 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 3.760e-22
Identity = 57/166 (34.34%), Postives = 94/166 (56.63%), Query Frame = -1 
Query:  236 PLLLKYVDKGRLTQIYESLICGLCVMKPKKPQLWILDKLRLIRTMDYDDLQWNTFIDEWMRPKHPFVIETILSFIF--------KSNDEYQPTIEMLSIAYSAYNRSIISRCFNAW-VIYHVSKKKRHGNESKLEEIALFHYQVKWISR-IFIAWKLWTVHRLQRQ 703
            PLL KYVD   L  ++E+LI GL VM P+ P++WI++KL  +  +  ++++W++FID  MRP+HPFV + +    F          +D YQPT EM   A   +N++++ +CF AW  + H+   +R   ++ + +   F  +  W  R  F AW  WT +  +R+
Sbjct:    8 PLLSKYVDDNYLYNVFEALISGLAVMLPEAPRVWIVEKLGKVYDIGNENVRWDSFIDPRMRPQHPFVAQDLFRGWFWRARIHSVSPSDRYQPTSEMFVKACHTFNQNLLKKCFRAWKQLVHIKAARRIQKQTMILKANKF--RKLWALRYAFDAWSNWTSNISKRR 171
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BLAST of SMED30008229 vs. TrEMBL
Match: A0A1S3JMT0 (F-box/LRR-repeat protein 13-like isoform X2 OS=Lingula unguis OX=7574 GN=LOC106174596 PE=4 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 4.210e-21
Identity = 59/154 (38.31%), Postives = 85/154 (55.19%), Query Frame = -1 
Query:  248 PLLLKYVDKGRLTQIYESLICGLCVMKPKKPQLWILDKLRLIRTMDYDDLQWNTFIDEWMRPKHPFVIETILSFIFKSND-EYQPTIEMLSIAYSAYNRSIISRCFNAWVIYH-VSKKKRHGNESKLEEIALFHYQVKWISRIFIAWKLWTVHR 703
            P L KY+   RL  +YE+L+ GL VM P  P+ +I+  LR I+      LQW+ F++E MRP+   + E+ L +IF  +D   QPT EM + A+S YN  + S CF+ W+ +H V K+KR   E K  E A+ HY  + +      W  W   R
Sbjct:   10 PELKKYLRINRLPDVYEALLTGLAVMCPDDPKAFIVKCLRHIQKYGLRCLQWDMFVEEEMRPRRRVITESNLDYIFNLDDYSLQPTPEMYAKAFSFYNSRLRSMCFHGWMQFHLVKKQKRMDMERKWCE-AVTHYAHRLMRLALNEWTQWMNFR 162
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BLAST of SMED30008229 vs. TrEMBL
Match: A0A1S3JNE8 (F-box/LRR-repeat protein 13-like isoform X1 OS=Lingula unguis OX=7574 GN=LOC106174596 PE=4 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 4.464e-21
Identity = 59/154 (38.31%), Postives = 85/154 (55.19%), Query Frame = -1 
Query:  248 PLLLKYVDKGRLTQIYESLICGLCVMKPKKPQLWILDKLRLIRTMDYDDLQWNTFIDEWMRPKHPFVIETILSFIFKSND-EYQPTIEMLSIAYSAYNRSIISRCFNAWVIYH-VSKKKRHGNESKLEEIALFHYQVKWISRIFIAWKLWTVHR 703
            P L KY+   RL  +YE+L+ GL VM P  P+ +I+  LR I+      LQW+ F++E MRP+   + E+ L +IF  +D   QPT EM + A+S YN  + S CF+ W+ +H V K+KR   E K  E A+ HY  + +      W  W   R
Sbjct:   10 PELKKYLRINRLPDVYEALLTGLAVMCPDDPKAFIVKCLRHIQKYGLRCLQWDMFVEEEMRPRRRVITESNLDYIFNLDDYSLQPTPEMYAKAFSFYNSRLRSMCFHGWMQFHLVKKQKRMDMERKWCE-AVTHYAHRLMRLALNEWTQWMNFR 162
[Close]
BLAST of SMED30008229 vs. TrEMBL
Match: A0A1S3JMS7 (F-box/LRR-repeat protein 13-like isoform X3 OS=Lingula unguis OX=7574 GN=LOC106174596 PE=4 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.044e-21
Identity = 59/154 (38.31%), Postives = 85/154 (55.19%), Query Frame = -1 
Query:  248 PLLLKYVDKGRLTQIYESLICGLCVMKPKKPQLWILDKLRLIRTMDYDDLQWNTFIDEWMRPKHPFVIETILSFIFKSND-EYQPTIEMLSIAYSAYNRSIISRCFNAWVIYH-VSKKKRHGNESKLEEIALFHYQVKWISRIFIAWKLWTVHR 703
            P L KY+   RL  +YE+L+ GL VM P  P+ +I+  LR I+      LQW+ F++E MRP+   + E+ L +IF  +D   QPT EM + A+S YN  + S CF+ W+ +H V K+KR   E K  E A+ HY  + +      W  W   R
Sbjct:   10 PELKKYLRINRLPDVYEALLTGLAVMCPDDPKAFIVKCLRHIQKYGLRCLQWDMFVEEEMRPRRRVITESNLDYIFNLDDYSLQPTPEMYAKAFSFYNSRLRSMCFHGWMQFHLVKKQKRMDMERKWCE-AVTHYAHRLMRLALNEWTQWMNFR 162
[Close]
BLAST of SMED30008229 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000001587.1 (pep scaffold:Pmarinus_7.0:GL477300:34863:67547:1 gene:ENSPMAG00000001430.1 transcript:ENSPMAT00000001587.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 80.1073 bits (196), Expect = 1.991e-17
Identity = 44/147 (29.93%), Postives = 71/147 (48.30%), Query Frame = -1 
Query:  221 IYESLICGLCVMKPKKPQLWILDKLRLIRTMDYDDLQWNTFIDEWMRPKHPFVIETILSFIFKSNDEYQPTIEMLSIAYSAYNRSIISRCFNAWVIYHVSKKKRHGNESKLEEIALFHYQVKWISRIFIAWKLWTVHRLQRQKGKVL 661
            +  +L+  LCV+ P+ P  ++L+K+R I+      L W  FIDE +RPK   V    L+FIF+ +D+  PT +    AYS   R +    F  W +Y   ++ R    ++    A  HY  K +    ++W  W   R +R  G  +
Sbjct:   23 LCHALLTALCVLCPENPLEFLLNKMREIQEFGLHTLDWEMFIDESLRPKLKRVTAGYLTFIFRFDDD-APTPQQFEKAYSFLRRKLQREYFVRWAMYGARRRARREQLTRALHRACDHYMRKKLGAALLSWSQWLHARQERMAGAAI 168
[Close]
BLAST of SMED30008229 vs. Ensembl Nematostella
Match: EDO48070 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RK01])

HSP 1 Score: 73.9442 bits (180), Expect = 4.834e-15
Identity = 47/147 (31.97%), Postives = 78/147 (53.06%), Query Frame = -1 
Query:  236 QIYESLICGLCVMKPKKPQLWILDKLRLIRTMD--YDDLQWNTFIDEWMRPKHPFVIETILSFIFKSNDE-YQPTIEMLSIAYSAYNRSIISRCFNAWVIYHVS-KKKRHGNESKLEEIALFHYQVKWISRIFIAWKLWTVHRLQRQ 664
             ++E+++  L +  P  PQ +IL KL L+   +   +DL+W++FIDE  +PK+  +    L F++   DE  QPT EM   AY+ YN  +   CF+AW+ +H   ++K+   + KL     +H Q + +      W  W   R +RQ
Sbjct:   22 DVFEAILTALAINCPDDPQEFILSKLTLVLGDEQVLEDLRWDSFIDEMYKPKNRIIKTAALEFLWSYEDENSQPTPEMYQKAYNLYNGRLKVMCFSAWLRFHRHMRRKKMILQRKLNNARTWHRQ-RILRLQLQKWIEWVAERKERQ 167
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BLAST of SMED30008229 vs. Ensembl Nematostella
Match: EDO28748 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T5L3])

HSP 1 Score: 59.3066 bits (142), Expect = 1.262e-11
Identity = 34/94 (36.17%), Postives = 53/94 (56.38%), Query Frame = -1 
Query:  389 IYESLICGLCVMKPKKPQLWILDKLRLIRTMD--YDDLQWNTFIDEWMRPKHPFVIETILSFIFKSNDE-YQPTIEMLSIAYSAYNRSIISRCF 661
            I ++++  L +  P  PQ +IL KL L+   +   +DL+W++FIDE  +PK+  +    L F++   DE  QPT EM   AY+ YN  +   CF
Sbjct:   12 IPQAILTALAINCPDDPQEFILSKLTLVLGDEQVLEDLRWDSFIDEMYKPKNRIIKTAALEFLWSYEDENSQPTPEMYQKAYNLYNGKLKVMCF 105
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BLAST of SMED30008229 vs. Planmine SMEST
Match: SMESG000077869.1 (SMESG000077869.1)

HSP 1 Score: 347.821 bits (891), Expect = 4.685e-115
Identity = 164/166 (98.80%), Postives = 165/166 (99.40%), Query Frame = -1 
Query:  233 MNLQIVPYKPLLLKYVDKGRLTQIYESLICGLCVMKPKKPQLWILDKLRLIRTMDYDDLQWNTFIDEWMRPKHPFVIETILSFIFKSNDEYQPTIEMLSIAYSAYNRSIISRCFNAWVIYHVSKKKRHGNESKLEEIALFHYQVKWISRIFIAWKLWTVHRLQRQK 730
            MNLQIVP KPLLLKYVDKGRLTQIYESLICGLCVMKPKKPQLWILDKLRLIRTMDYDDLQW+TFIDEWMRPKHPFVIETILSFIFKSNDEYQPTIEMLSIAYSAYNRSIISRCFNAWVIYHVSKKKRHGNESKLEEIALFHYQVKWISRIFIAWKLWTVHRLQRQK
Sbjct:    1 MNLQIVPCKPLLLKYVDKGRLTQIYESLICGLCVMKPKKPQLWILDKLRLIRTMDYDDLQWDTFIDEWMRPKHPFVIETILSFIFKSNDEYQPTIEMLSIAYSAYNRSIISRCFNAWVIYHVSKKKRHGNESKLEEIALFHYQVKWISRIFIAWKLWTVHRLQRQK 166
The following BLAST results are available for this feature:
BLAST of SMED30008229 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008229 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008229 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008229 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
fbxl134.782e-1129.61F-box and leucine-rich repeat protein 13 [Source:Z... [more]
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BLAST of SMED30008229 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008229 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008229 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008229 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A4Z2DTX92.729e-2335.44F-box/LRR-repeat protein (Fragment) OS=Schistosoma... [more]
A0A3R7F8183.760e-2234.34F-box/LRR-repeat protein 13 OS=Clonorchis sinensis... [more]
A0A1S3JMT04.210e-2138.31F-box/LRR-repeat protein 13-like isoform X2 OS=Lin... [more]
A0A1S3JNE84.464e-2138.31F-box/LRR-repeat protein 13-like isoform X1 OS=Lin... [more]
A0A1S3JMS75.044e-2138.31F-box/LRR-repeat protein 13-like isoform X3 OS=Lin... [more]
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BLAST of SMED30008229 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008229 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
ENSPMAT00000001587.11.991e-1729.93pep scaffold:Pmarinus_7.0:GL477300:34863:67547:1 g... [more]
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BLAST of SMED30008229 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008229 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 2
Match NameE-valueIdentityDescription
EDO480704.834e-1531.97Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO287481.262e-1136.17Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of SMED30008229 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008229 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000077869.14.685e-11598.80SMESG000077869.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30008229 ID=SMED30008229|Name=SMED30008229|organism=Schmidtea mediterranea sexual|type=transcript|length=778bp
CCATATTTTAATAAAAAGCGGTATAGTATGCTTAAAACGTTTAGAAATGT
AAGTACCTCTCTATTAGGATATTCATTACCTAAAAAGCTTCTGCCAACAC
CTCAGAAAAAGGCACGGCTATGTAAATATGTCACGCTATTAAAATTACCT
ATAGATATGAAGGAGAATTTCAAAGGCAACTGTCGAATAGCATGAATCAT
GGAGATAAATTGAACATTCCCAAAACTTTACCCTTTTGACGTTGTAATCT
ATGAACAGTCCAAAGTTTCCAAGCTATAAATATTCTAGATATCCATTTAA
CTTGGTAATGAAACAAAGCTATTTCTTCTAATTTTGACTCATTTCCGTGC
CGTTTCTTTTTGGACACATGATAAATTACCCAGGCATTGAAACATCTGCT
AATGATTGAACGATTATAAGCAGAATAAGCGATTGACAGCATTTCAATCG
TTGGTTGGTATTCATCGTTACTTTTAAAAATAAAGCTTAAAATAGTTTCA
ATAACAAACGGATGTTTCGGTCGCATCCATTCATCAATAAACGTGTTCCA
TTGCAAATCATCATAATCCATTGTTCTGATAAGCCGTAATTTGTCTAAAA
TCCATAATTGAGGTTTTTTCGGTTTCATGACGCATAAACCACAAATGAGA
GATTCATAGATTTGTGTTAAACGTCCTTTATCAACATATTTCAATAAAAG
GGGTTTATATGGGACAATCTGTAAATTCATATTGCAATAATTTATTTGAA
AATTTAAGAAAATAATTATTATTTTAAA
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protein sequence of SMED30008229-orf-1

>SMED30008229-orf-1 ID=SMED30008229-orf-1|Name=SMED30008229-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=194bp
FKIIIIFLNFQINYCNMNLQIVPYKPLLLKYVDKGRLTQIYESLICGLCV
MKPKKPQLWILDKLRLIRTMDYDDLQWNTFIDEWMRPKHPFVIETILSFI
FKSNDEYQPTIEMLSIAYSAYNRSIISRCFNAWVIYHVSKKKRHGNESKL
EEIALFHYQVKWISRIFIAWKLWTVHRLQRQKGKVLGMFNLSP*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000025nervous system
PLANA:0000034epidermis
PLANA:0000418head
PLANA:0002089reproductive organ