SMED30008182

Overview
NameSMED30008182
Smed IDSMED30008182
Length (bp)319
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30008182 (SMED30008182) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30008182 (SMED30008182) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30008182 (SMED30008182) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30008182 (SMED30008182) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30008182

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 4

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30008182SMESG000081731.1 SMESG000081727.1 SmedASXL_018855SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
nervous systemSMED30008182SMESG000081731.1 SMESG000081727.1 dd_Smed_v4_622_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30008182SMESG000081731.1 SMESG000081727.1 dd_Smed_v4_622_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30008182SMESG000081731.1 SMESG000081727.1 dd_Smed_v4_622_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30008182 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.000327:147204..147610 -1558
Homology
[Close]
BLAST of SMED30008182 vs. Ensembl Human
Match: SNRPG (small nuclear ribonucleoprotein polypeptide G [Source:HGNC Symbol;Acc:HGNC:11163])

HSP 1 Score: 108.997 bits (271), Expect = 3.857e-32
Identity = 48/76 (63.16%), Postives = 65/76 (85.53%), Query Frame = -2 
Query:   43 MNRAHPPELKKYMDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRV 270
            M++AHPPELKK+MDK+++LKLNG R V+GI+RGFDPFMN+V++  VE+    Q+ NIG +VIRGNSI +LEA++RV
Sbjct:    1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALERV 76
[Close]
BLAST of SMED30008182 vs. Ensembl Human
Match: SNRPG (small nuclear ribonucleoprotein polypeptide G [Source:HGNC Symbol;Acc:HGNC:11163])

HSP 1 Score: 87.8113 bits (216), Expect = 6.518e-24
Identity = 39/65 (60.00%), Postives = 54/65 (83.08%), Query Frame = -2 
Query:   43 YMDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRV 237
            +MDK+++LKLNG R V+GI+RGFDPFMN+V++  VE+    Q+ NIG +VIRGNSI +LEA++RV
Sbjct:    4 FMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALERV 68
[Close]
BLAST of SMED30008182 vs. Ensembl Human
Match: SNRPG (small nuclear ribonucleoprotein polypeptide G [Source:HGNC Symbol;Acc:HGNC:11163])

HSP 1 Score: 85.8853 bits (211), Expect = 3.814e-23
Identity = 39/64 (60.94%), Postives = 53/64 (82.81%), Query Frame = -2 
Query:   43 MDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRV 234
            MDK+++LKLNG R V+GI+RGFDPFMN+V++  VE+    Q+ NIG +VIRGNSI +LEA++RV
Sbjct:    1 MDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALERV 64
[Close]
BLAST of SMED30008182 vs. Ensembl Human
Match: SNRPG (small nuclear ribonucleoprotein polypeptide G [Source:HGNC Symbol;Acc:HGNC:11163])

HSP 1 Score: 85.8853 bits (211), Expect = 3.814e-23
Identity = 39/64 (60.94%), Postives = 53/64 (82.81%), Query Frame = -2 
Query:   43 MDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRV 234
            MDK+++LKLNG R V+GI+RGFDPFMN+V++  VE+    Q+ NIG +VIRGNSI +LEA++RV
Sbjct:    1 MDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALERV 64
[Close]
BLAST of SMED30008182 vs. Ensembl Human
Match: SNRPG (small nuclear ribonucleoprotein polypeptide G [Source:HGNC Symbol;Acc:HGNC:11163])

HSP 1 Score: 85.8853 bits (211), Expect = 3.814e-23
Identity = 39/64 (60.94%), Postives = 53/64 (82.81%), Query Frame = -2 
Query:   43 MDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRV 234
            MDK+++LKLNG R V+GI+RGFDPFMN+V++  VE+    Q+ NIG +VIRGNSI +LEA++RV
Sbjct:    1 MDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALERV 64
[Close]
BLAST of SMED30008182 vs. Ensembl Celegans
Match: snr-7 (Probable small nuclear ribonucleoprotein G [Source:UniProtKB/Swiss-Prot;Acc:Q9N4G9])

HSP 1 Score: 107.842 bits (268), Expect = 4.333e-32
Identity = 49/76 (64.47%), Postives = 61/76 (80.26%), Query Frame = -2 
Query:   43 MNRAHPPELKKYMDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRV 270
            M++ HPPELKKYMDK M LKLNG+RRV GI+RGFDPFMN+V++ AVE  KD   VN+G  VIRGNS+ I+E  +R+
Sbjct:    1 MSKTHPPELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVNLGMTVIRGNSVVIMEPKERI 76
[Close]
BLAST of SMED30008182 vs. Ensembl Celegans
Match: lsm-7 (LSM Sm-like protein [Source:UniProtKB/TrEMBL;Acc:Q23543])

HSP 1 Score: 51.9878 bits (123), Expect = 6.568e-10
Identity = 24/75 (32.00%), Postives = 43/75 (57.33%), Query Frame = -2 
Query:   49 ELKKYMDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNI--------GTIVIRGNSISILEAVD 249
            +L +++DK + +K  G R   G++RGFD  +N+VL++  E  +D Q  ++        G IV RG +I+++   D
Sbjct:   15 DLTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSVVGDETRQLGLIVARGTAITVVSPAD 89
[Close]
BLAST of SMED30008182 vs. Ensembl Celegans
Match: lsm-6 (LSM Sm-like protein [Source:UniProtKB/TrEMBL;Acc:Q95XN6])

HSP 1 Score: 40.817 bits (94), Expect = 8.224e-6
Identity = 24/66 (36.36%), Postives = 34/66 (51.52%), Query Frame = -2 
Query:   70 RAHPPE-LKKYMDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSI 264
            R +P E LKK + K + +KLN     +GI+   D +MNI LE   E      +   G   IRGN++
Sbjct:    4 RQNPAEFLKKVIGKPVVVKLNSGVDYRGILACLDGYMNIALEQTEEYSNGQLQNKYGDAFIRGNNV 69
[Close]
BLAST of SMED30008182 vs. Ensembl Fly
Match: SNRPG (gene:FBgn0261791 transcript:FBtr0112993)

HSP 1 Score: 112.464 bits (280), Expect = 8.134e-34
Identity = 53/76 (69.74%), Postives = 65/76 (85.53%), Query Frame = -2 
Query:   43 MNRAHPPELKKYMDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRV 270
            M++AHPPE+KKYMDKRM LKLNG R V GI+RGFDPFMN+VL++ VE  KDN + NIG +VIRGNSI ++EA+DRV
Sbjct:    1 MSKAHPPEVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMVVIRGNSIVMVEALDRV 76
[Close]
BLAST of SMED30008182 vs. Ensembl Fly
Match: SNRPG (gene:FBgn0261791 transcript:FBtr0074377)

HSP 1 Score: 112.464 bits (280), Expect = 8.134e-34
Identity = 53/76 (69.74%), Postives = 65/76 (85.53%), Query Frame = -2 
Query:   43 MNRAHPPELKKYMDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRV 270
            M++AHPPE+KKYMDKRM LKLNG R V GI+RGFDPFMN+VL++ VE  KDN + NIG +VIRGNSI ++EA+DRV
Sbjct:    1 MSKAHPPEVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMVVIRGNSIVMVEALDRV 76
[Close]
BLAST of SMED30008182 vs. Ensembl Fly
Match: LSm7 (gene:FBgn0261068 transcript:FBtr0343770)

HSP 1 Score: 51.9878 bits (123), Expect = 1.148e-9
Identity = 25/78 (32.05%), Postives = 46/78 (58.97%), Query Frame = -2 
Query:   43 ELKKYMDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEV---------NIGTIVIRGNSISILEAVDRV 249
            +L KY++K++ +K  G R   GI++G+D  +N+VL+N VE  +D+ E          ++G +V RG ++ ++   D V
Sbjct:   23 DLSKYLEKQIRVKFAGGREASGILKGYDALLNLVLDNTVEYLRDSDEPYKLTEEQTRSLGLVVCRGTALVLICPQDGV 100
[Close]
BLAST of SMED30008182 vs. Ensembl Fly
Match: LSm7 (gene:FBgn0261068 transcript:FBtr0080934)

HSP 1 Score: 51.9878 bits (123), Expect = 1.148e-9
Identity = 25/78 (32.05%), Postives = 46/78 (58.97%), Query Frame = -2 
Query:   43 ELKKYMDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEV---------NIGTIVIRGNSISILEAVDRV 249
            +L KY++K++ +K  G R   GI++G+D  +N+VL+N VE  +D+ E          ++G +V RG ++ ++   D V
Sbjct:   23 DLSKYLEKQIRVKFAGGREASGILKGYDALLNLVLDNTVEYLRDSDEPYKLTEEQTRSLGLVVCRGTALVLICPQDGV 100
[Close]
BLAST of SMED30008182 vs. Ensembl Fly
Match: LSm7 (gene:FBgn0261068 transcript:FBtr0308804)

HSP 1 Score: 51.9878 bits (123), Expect = 1.148e-9
Identity = 25/78 (32.05%), Postives = 46/78 (58.97%), Query Frame = -2 
Query:   43 ELKKYMDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEV---------NIGTIVIRGNSISILEAVDRV 249
            +L KY++K++ +K  G R   GI++G+D  +N+VL+N VE  +D+ E          ++G +V RG ++ ++   D V
Sbjct:   23 DLSKYLEKQIRVKFAGGREASGILKGYDALLNLVLDNTVEYLRDSDEPYKLTEEQTRSLGLVVCRGTALVLICPQDGV 100
[Close]
BLAST of SMED30008182 vs. Ensembl Zebrafish
Match: snrpg (small nuclear ribonucleoprotein polypeptide G [Source:ZFIN;Acc:ZDB-GENE-040912-105])

HSP 1 Score: 103.605 bits (257), Expect = 2.726e-30
Identity = 46/76 (60.53%), Postives = 64/76 (84.21%), Query Frame = -2 
Query:   43 MNRAHPPELKKYMDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRV 270
            M++AHPPELKK+MDK+++LKLNG R V+GI+RGFDPFMN+V+++ +E+    Q   IG +VIRGNSI +LEA++RV
Sbjct:    1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVVDDTIEMAPGGQMNTIGMVVIRGNSIIMLEALERV 76
[Close]
BLAST of SMED30008182 vs. Ensembl Zebrafish
Match: lsm7 (LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:ZFIN;Acc:ZDB-GENE-030131-8284])

HSP 1 Score: 53.9138 bits (128), Expect = 1.858e-10
Identity = 26/75 (34.67%), Postives = 43/75 (57.33%), Query Frame = -2 
Query:   49 ELKKYMDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVEI--DKDNQ------EVNIGTIVIRGNSISILEAVD 249
            +L KY+DK + +K  G R   G+++GFDP +N+VL+  +E   D D+Q         +G +V RG S+ ++   D
Sbjct:   14 DLSKYIDKHIRVKFQGGREASGVLKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLICPQD 88
[Close]
BLAST of SMED30008182 vs. Ensembl Xenopus
Match: snrpg (small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:100125174])

HSP 1 Score: 104.76 bits (260), Expect = 1.805e-30
Identity = 46/76 (60.53%), Postives = 62/76 (81.58%), Query Frame = -2 
Query:   43 MNRAHPPELKKYMDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRV 270
            M++AHPPELKK+MDK+++LKLNG R V+GI+RGFDPFMN+V++   EI     +  IG +VIRGNSI +LEA++RV
Sbjct:    1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECTEISGGGHQNTIGMVVIRGNSIIMLEALERV 76
[Close]
BLAST of SMED30008182 vs. Ensembl Xenopus
Match: lsm7 (LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:NCBI gene;Acc:100127774])

HSP 1 Score: 53.9138 bits (128), Expect = 2.676e-10
Identity = 26/75 (34.67%), Postives = 43/75 (57.33%), Query Frame = -2 
Query:   49 ELKKYMDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVEI--DKDNQ------EVNIGTIVIRGNSISILEAVD 249
            +L KY+DK + +K  G R   G+++GFDP +N+VL+  +E   D D+Q         +G +V RG S+ ++   D
Sbjct:   14 DLSKYIDKAIRVKFQGGREASGVLKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLICPQD 88
[Close]
BLAST of SMED30008182 vs. Ensembl Xenopus
Match: lsm7 (LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:NCBI gene;Acc:100127774])

HSP 1 Score: 53.9138 bits (128), Expect = 2.885e-10
Identity = 26/75 (34.67%), Postives = 43/75 (57.33%), Query Frame = -2 
Query:   49 ELKKYMDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVEI--DKDNQ------EVNIGTIVIRGNSISILEAVD 249
            +L KY+DK + +K  G R   G+++GFDP +N+VL+  +E   D D+Q         +G +V RG S+ ++   D
Sbjct:   14 DLSKYIDKAIRVKFQGGREASGVLKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLICPQD 88
[Close]
BLAST of SMED30008182 vs. Ensembl Mouse
Match: Snrpg (small nuclear ribonucleoprotein polypeptide G [Source:MGI Symbol;Acc:MGI:1915261])

HSP 1 Score: 108.997 bits (271), Expect = 2.648e-32
Identity = 48/76 (63.16%), Postives = 65/76 (85.53%), Query Frame = -2 
Query:   43 MNRAHPPELKKYMDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRV 270
            M++AHPPELKK+MDK+++LKLNG R V+GI+RGFDPFMN+V++  VE+    Q+ NIG +VIRGNSI +LEA++RV
Sbjct:    1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALERV 76
[Close]
BLAST of SMED30008182 vs. Ensembl Mouse
Match: Lsm7 (LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:MGI Symbol;Acc:MGI:1913344])

HSP 1 Score: 53.9138 bits (128), Expect = 2.769e-10
Identity = 27/75 (36.00%), Postives = 43/75 (57.33%), Query Frame = -2 
Query:   49 ELKKYMDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVEI--DKDNQ------EVNIGTIVIRGNSISILEAVD 249
            +L KY+DK + +K  G R   GI++GFDP +N+VL+  +E   D D+Q         +G +V RG S+ ++   D
Sbjct:   14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLICPQD 88
[Close]
BLAST of SMED30008182 vs. Ensembl Mouse
Match: Lsm7 (LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:MGI Symbol;Acc:MGI:1913344])

HSP 1 Score: 46.595 bits (109), Expect = 8.426e-8
Identity = 21/52 (40.38%), Postives = 34/52 (65.38%), Query Frame = -2 
Query:   97 ELKKYMDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVE-IDKDNQEVNIG 249
            +L KY+DK + +K  G R   GI++GFDP +N+VL+  +E +  +  EV +G
Sbjct:   14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRGEPAEVVVG 65
[Close]
BLAST of SMED30008182 vs. Ensembl Mouse
Match: Snrpe (small nuclear ribonucleoprotein E [Source:MGI Symbol;Acc:MGI:98346])

HSP 1 Score: 41.9726 bits (97), Expect = 8.813e-6
Identity = 19/50 (38.00%), Postives = 36/50 (72.00%), Query Frame = -2 
Query:   49 RVKGIMRGFDPFMNIVLENAVEI-DKDNQEVNIGTIVIRGNSISILEAVD 195
            R++G + GFD +MN+VL++A EI  K      +G I+++G++I++L++V 
Sbjct:   42 RIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSVS 91
[Close]
BLAST of SMED30008182 vs. UniProt/SwissProt
Match: sp|Q9VXE0|RUXG_DROME (Probable small nuclear ribonucleoprotein G OS=Drosophila melanogaster OX=7227 GN=SNRPG PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 8.154e-33
Identity = 53/76 (69.74%), Postives = 65/76 (85.53%), Query Frame = -2 
Query:   43 MNRAHPPELKKYMDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRV 270
            M++AHPPE+KKYMDKRM LKLNG R V GI+RGFDPFMN+VL++ VE  KDN + NIG +VIRGNSI ++EA+DRV
Sbjct:    1 MSKAHPPEVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMVVIRGNSIVMVEALDRV 76
[Close]
BLAST of SMED30008182 vs. UniProt/SwissProt
Match: sp|P62309|RUXG_MOUSE (Small nuclear ribonucleoprotein G OS=Mus musculus OX=10090 GN=Snrpg PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.852e-31
Identity = 48/76 (63.16%), Postives = 65/76 (85.53%), Query Frame = -2 
Query:   43 MNRAHPPELKKYMDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRV 270
            M++AHPPELKK+MDK+++LKLNG R V+GI+RGFDPFMN+V++  VE+    Q+ NIG +VIRGNSI +LEA++RV
Sbjct:    1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALERV 76
[Close]
BLAST of SMED30008182 vs. UniProt/SwissProt
Match: sp|P62308|RUXG_HUMAN (Small nuclear ribonucleoprotein G OS=Homo sapiens OX=9606 GN=SNRPG PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.852e-31
Identity = 48/76 (63.16%), Postives = 65/76 (85.53%), Query Frame = -2 
Query:   43 MNRAHPPELKKYMDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRV 270
            M++AHPPELKK+MDK+++LKLNG R V+GI+RGFDPFMN+V++  VE+    Q+ NIG +VIRGNSI +LEA++RV
Sbjct:    1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALERV 76
[Close]
BLAST of SMED30008182 vs. UniProt/SwissProt
Match: sp|Q3ZBL0|RUXG_BOVIN (Small nuclear ribonucleoprotein G OS=Bos taurus OX=9913 GN=SNRPG PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.852e-31
Identity = 48/76 (63.16%), Postives = 65/76 (85.53%), Query Frame = -2 
Query:   43 MNRAHPPELKKYMDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRV 270
            M++AHPPELKK+MDK+++LKLNG R V+GI+RGFDPFMN+V++  VE+    Q+ NIG +VIRGNSI +LEA++RV
Sbjct:    1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALERV 76
[Close]
BLAST of SMED30008182 vs. UniProt/SwissProt
Match: sp|Q9N4G9|RUXG_CAEEL (Probable small nuclear ribonucleoprotein G OS=Caenorhabditis elegans OX=6239 GN=snr-7 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.512e-31
Identity = 49/76 (64.47%), Postives = 61/76 (80.26%), Query Frame = -2 
Query:   43 MNRAHPPELKKYMDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRV 270
            M++ HPPELKKYMDK M LKLNG+RRV GI+RGFDPFMN+V++ AVE  KD   VN+G  VIRGNS+ I+E  +R+
Sbjct:    1 MSKTHPPELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVNLGMTVIRGNSVVIMEPKERI 76
[Close]
BLAST of SMED30008182 vs. TrEMBL
Match: A0A132AEA1 (Small nuclear ribonucleoprotein G OS=Sarcoptes scabiei OX=52283 GN=QR98_0074000 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 2.293e-33
Identity = 52/76 (68.42%), Postives = 70/76 (92.11%), Query Frame = -2 
Query:   43 MNRAHPPELKKYMDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRV 270
            M+RAHPPELKKYMDKR++LKLNG+R++ GI+RGFDPFMN+V++ AVEI+K NQ+V IG +V+RGNS+ +LEA+DR+
Sbjct:    1 MSRAHPPELKKYMDKRLSLKLNGNRQISGILRGFDPFMNLVIDEAVEINKRNQQVPIGMVVVRGNSVVLLEALDRI 76
[Close]
BLAST of SMED30008182 vs. TrEMBL
Match: A0A1Y3AYC3 (Small nuclear ribonucleoprotein G OS=Euroglyphus maynei OX=6958 GN=BLA29_002598 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.632e-32
Identity = 50/76 (65.79%), Postives = 70/76 (92.11%), Query Frame = -2 
Query:   43 MNRAHPPELKKYMDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRV 270
            M++AHPPELKKYMDKR++LKLNG+R+V GI+RGFDPFMN+V++ AVEI+K NQ++ IG +VIRGN++ +LE++DR+
Sbjct:    1 MSKAHPPELKKYMDKRLSLKLNGNRQVSGILRGFDPFMNLVIDEAVEINKRNQQIPIGMVVIRGNAVVLLESLDRI 76
[Close]
BLAST of SMED30008182 vs. TrEMBL
Match: B3MRC4 (Small nuclear ribonucleoprotein G OS=Drosophila ananassae OX=7217 GN=Dana\GF21254 PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 6.704e-31
Identity = 54/76 (71.05%), Postives = 65/76 (85.53%), Query Frame = -2 
Query:   43 MNRAHPPELKKYMDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRV 270
            M++AHPPELKKYMDKRM LKLNG R V GI+RGFDPFMN+VL++ VE  KDN + NIG +VIRGNSI ++EA+DRV
Sbjct:    1 MSKAHPPELKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMVVIRGNSIVMVEALDRV 76
[Close]
BLAST of SMED30008182 vs. TrEMBL
Match: B3NVJ9 (Small nuclear ribonucleoprotein G OS=Drosophila erecta OX=7220 GN=Dere\GG18240 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.704e-31
Identity = 54/76 (71.05%), Postives = 65/76 (85.53%), Query Frame = -2 
Query:   43 MNRAHPPELKKYMDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRV 270
            M++AHPPELKKYMDKRM LKLNG R V GI+RGFDPFMN+VL++ VE  KDN + NIG +VIRGNSI ++EA+DRV
Sbjct:    1 MSKAHPPELKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMVVIRGNSIVMVEALDRV 76
[Close]
BLAST of SMED30008182 vs. TrEMBL
Match: B4PXV5 (Small nuclear ribonucleoprotein G OS=Drosophila yakuba OX=7245 GN=Dyak\GE15956 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.704e-31
Identity = 54/76 (71.05%), Postives = 65/76 (85.53%), Query Frame = -2 
Query:   43 MNRAHPPELKKYMDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRV 270
            M++AHPPELKKYMDKRM LKLNG R V GI+RGFDPFMN+VL++ VE  KDN + NIG +VIRGNSI ++EA+DRV
Sbjct:    1 MSKAHPPELKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMVVIRGNSIVMVEALDRV 76
[Close]
BLAST of SMED30008182 vs. Ensembl Cavefish
Match: snrpg (small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:107196920])

HSP 1 Score: 105.916 bits (263), Expect = 3.147e-31
Identity = 46/76 (60.53%), Postives = 65/76 (85.53%), Query Frame = -2 
Query:   43 MNRAHPPELKKYMDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRV 270
            M++AHPPELKK+MDK+++LKLNG R V+GI+RGFDPFMN+V+++ +E+    Q+  IG +VIRGNSI +LEA++RV
Sbjct:    1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVVDDCLEMSPGGQQNTIGMVVIRGNSIIMLEALERV 76
[Close]
BLAST of SMED30008182 vs. Ensembl Cavefish
Match: snrpg (small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:107196920])

HSP 1 Score: 85.1149 bits (209), Expect = 4.898e-23
Identity = 35/61 (57.38%), Postives = 51/61 (83.61%), Query Frame = -2 
Query:   88 MNRAHPPELKKYMDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIV 270
            M++AHPPELKK+MDK+++LKLNG R V+GI+RGFDPFMN+V+++ +E+    Q+  IG +V
Sbjct:    1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVVDDCLEMSPGGQQNTIGMVV 61
[Close]
BLAST of SMED30008182 vs. Ensembl Cavefish
Match: lsm7 (LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:NCBI gene;Acc:103032086])

HSP 1 Score: 52.7582 bits (125), Expect = 4.766e-10
Identity = 25/75 (33.33%), Postives = 43/75 (57.33%), Query Frame = -2 
Query:   49 ELKKYMDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVEI--DKDNQ------EVNIGTIVIRGNSISILEAVD 249
            +L KY+DK + +K  G R   G+++GFDP +N+VL+  +E   D D+Q         +G +V RG ++ ++   D
Sbjct:   14 DLSKYIDKPIRVKFQGGREASGVLKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRGTAVVLICPQD 88
[Close]
BLAST of SMED30008182 vs. Ensembl Sea Lamprey
Match: snrpg (small nuclear ribonucleoprotein polypeptide G [Source:ZFIN;Acc:ZDB-GENE-040912-105])

HSP 1 Score: 102.834 bits (255), Expect = 1.298e-30
Identity = 44/76 (57.89%), Postives = 63/76 (82.89%), Query Frame = -2 
Query:   43 MNRAHPPELKKYMDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRV 270
            M++AHPPELKK+MDK+++LKLNG R V GI+RGFDPFMN+V++   E+ +   + ++G +VIRGNSI +LEA++RV
Sbjct:    1 MSKAHPPELKKFMDKKLSLKLNGSRTVTGILRGFDPFMNLVMDECFELCQGGVQNDVGMVVIRGNSIIMLEALERV 76
[Close]
BLAST of SMED30008182 vs. Ensembl Yeast
Match: SMX2 (Core Sm protein Sm G; part of heteroheptameric complex (with Smb1p, Smd1p, Smd2p, Smd3p, Sme1p, and Smx3p) that is part of the spliceosomal U1, U2, U4, and U5 snRNPs; homolog of human Sm G [Source:SGD;Acc:S000002965])

HSP 1 Score: 77.411 bits (189), Expect = 6.761e-21
Identity = 39/74 (52.70%), Postives = 57/74 (77.03%), Query Frame = -2 
Query:   43 PELKKYMDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVEID----KDNQEVNIGTIVIRGNSISILEAVDRV 252
            PELKKYMDK++ L +NG R+V GI+RG+D F+N+VL++A+EI+     +N ++ + T VIRGNSI  LEA+D +
Sbjct:    5 PELKKYMDKKILLNINGSRKVAGILRGYDIFLNVVLDDAMEINGEDPANNHQLGLQT-VIRGNSIISLEALDAI 77
[Close]
BLAST of SMED30008182 vs. Ensembl Yeast
Match: LSM7 (Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay; nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA; protein abundance increases and forms cytoplasmic foci in response to DNA replication stress [Source:SGD;Acc:S000005091])

HSP 1 Score: 45.8246 bits (107), Expect = 3.656e-8
Identity = 29/84 (34.52%), Postives = 48/84 (57.14%), Query Frame = -2 
Query:   40 ELKKYMDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVEI-----DKDNQEV------NIGTIVIRGN---SISILEAVDRVF 249
            +L KY D ++ +KL G + V G+++G+D  MN+VL++ VE      D++N E+       +G  VIRG    S+S  E  D ++
Sbjct:   29 DLAKYKDSKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMSNPDDENNTELISKNARKLGLTVIRGTILVSLSSAEGSDVLY 112
[Close]
BLAST of SMED30008182 vs. Ensembl Yeast
Match: LSM5 (Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay; nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA [Source:SGD;Acc:S000000948])

HSP 1 Score: 41.5874 bits (96), Expect = 1.272e-6
Identity = 23/70 (32.86%), Postives = 45/70 (64.29%), Query Frame = -2 
Query:   61 LKKYMDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVE--IDKDNQEVNI------GTIVIRGNSISIL 246
            + K +++++ + L  +R  +G + GFD F+N++LE+AVE  ID +++  N       G +++ GN+I+IL
Sbjct:   12 IDKTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLIDPEDESRNEKVMQHHGRMLLSGNNIAIL 81
[Close]
BLAST of SMED30008182 vs. Ensembl Yeast
Match: LSM3 (Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay; nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA; protein increases in abundance and relocalizes from nucleus to cytoplasmic foci upon DNA replication stress [Source:SGD;Acc:S000006434])

HSP 1 Score: 41.2022 bits (95), Expect = 1.440e-6
Identity = 23/69 (33.33%), Postives = 42/69 (60.87%), Query Frame = -2 
Query:   61 LKKYMDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVEI--DKDNQEVN-----IGTIVIRGNSISIL 246
            LK  +D+R+ +KL G R + G ++ FD   NIVL +AVE     +N+E++        + IRG++++++
Sbjct:    8 LKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRCEMVFIRGDTVTLI 76
[Close]
BLAST of SMED30008182 vs. Ensembl Yeast
Match: SME1 (Core Sm protein Sm E; part of heteroheptameric complex (with Smb1p, Smd1p, Smd2p, Smd3p, Smx3p, and Smx2p) that is part of the spliceosomal U1, U2, U4, and U5 snRNPs; homolog of human Sm E [Source:SGD;Acc:S000005685])

HSP 1 Score: 39.2762 bits (90), Expect = 9.915e-6
Identity = 21/57 (36.84%), Postives = 37/57 (64.91%), Query Frame = -2 
Query:   49 RVKGIMRGFDPFMNIVLENAVEI---DKDNQE-----VNIGTIVIRGNSISILEAVD 195
            R+KG + GFD FMN+V++ AVEI     D +E       +G I+++G++I+++ + D
Sbjct:   38 RIKGKIVGFDEFMNVVIDEAVEIPVNSADGKEDVEKGTPLGKILLKGDNITLITSAD 94
[Close]
BLAST of SMED30008182 vs. Ensembl Nematostella
Match: EDO48813 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RII4])

HSP 1 Score: 106.686 bits (265), Expect = 6.259e-32
Identity = 48/77 (62.34%), Postives = 64/77 (83.12%), Query Frame = -2 
Query:   40 MNRAHPPELKKYMDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRVF 270
            M++AHPPELKKYMDK+++LKLNG R V G++RG+DPFMN+VL++AVE    N++  IG +VIRGNSI  +EA+DRV 
Sbjct:    1 MSKAHPPELKKYMDKKLSLKLNGGRHVSGVLRGYDPFMNLVLDDAVENVSGNEKHAIGMVVIRGNSIVTMEALDRVL 77
[Close]
BLAST of SMED30008182 vs. Ensembl Nematostella
Match: EDO41002 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S5M5])

HSP 1 Score: 50.0618 bits (118), Expect = 1.807e-9
Identity = 22/75 (29.33%), Postives = 44/75 (58.67%), Query Frame = -2 
Query:   49 ELKKYMDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKD--------NQEVNIGTIVIRGNSISILEAVD 249
            +L K++DK + +K  G R   G+++GFD  +N+VL+N +E  +D        ++   +G +V RG ++ ++  +D
Sbjct:   14 DLSKFLDKGVRVKFQGGREASGVLKGFDALLNLVLDNTIEYLRDPDDPLKLSDETRQLGLVVCRGTAVVLVCPMD 88
[Close]
BLAST of SMED30008182 vs. Ensembl Medaka
Match: snrpg (small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:101154947])

HSP 1 Score: 105.916 bits (263), Expect = 2.961e-31
Identity = 46/76 (60.53%), Postives = 65/76 (85.53%), Query Frame = -2 
Query:   43 MNRAHPPELKKYMDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRV 270
            M++AHPPELKK+MDK+++LKLNG R V+GI+RGFDPFMN+V+++ +E+    Q+  IG +VIRGNSI +LEA++RV
Sbjct:    1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVMDDCLEMGPGGQQNTIGMVVIRGNSIIMLEALERV 76
[Close]
BLAST of SMED30008182 vs. Ensembl Medaka
Match: snrpg (small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:101154947])

HSP 1 Score: 83.5741 bits (205), Expect = 4.896e-22
Identity = 34/60 (56.67%), Postives = 50/60 (83.33%), Query Frame = -2 
Query:   91 MNRAHPPELKKYMDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTI 270
            M++AHPPELKK+MDK+++LKLNG R V+GI+RGFDPFMN+V+++ +E+    Q+  IG +
Sbjct:    1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVMDDCLEMGPGGQQNTIGMV 60
[Close]
BLAST of SMED30008182 vs. Ensembl Medaka
Match: lsm7 (LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:NCBI gene;Acc:101175386])

HSP 1 Score: 53.9138 bits (128), Expect = 1.724e-10
Identity = 26/75 (34.67%), Postives = 43/75 (57.33%), Query Frame = -2 
Query:   49 ELKKYMDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVEI--DKDNQ------EVNIGTIVIRGNSISILEAVD 249
            +L KY+DK + +K  G R   G+++GFDP +N+VL+  +E   D D+Q         +G +V RG S+ ++   D
Sbjct:   14 DLSKYIDKPIRVKFQGGREASGVLKGFDPLLNLVLDGTIEYMRDPDDQLKLTEDTRQLGLVVCRGTSVVLICPQD 88
[Close]
BLAST of SMED30008182 vs. Ensembl Medaka
Match: lsm7 (LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:NCBI gene;Acc:101175386])

HSP 1 Score: 54.299 bits (129), Expect = 2.309e-10
Identity = 26/75 (34.67%), Postives = 43/75 (57.33%), Query Frame = -2 
Query:   49 ELKKYMDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVEI--DKDNQ------EVNIGTIVIRGNSISILEAVD 249
            +L KY+DK + +K  G R   G+++GFDP +N+VL+  +E   D D+Q         +G +V RG S+ ++   D
Sbjct:   35 DLSKYIDKPIRVKFQGGREASGVLKGFDPLLNLVLDGTIEYMRDPDDQLKLTEDTRQLGLVVCRGTSVVLICPQD 109
[Close]
BLAST of SMED30008182 vs. Planmine SMEST
Match: SMESG000081731.1 (SMESG000081731.1)

HSP 1 Score: 157.532 bits (397), Expect = 1.044e-51
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = -2 
Query:   40 MNRAHPPELKKYMDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRVF 270
            MNRAHPPELKKYMDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRVF
Sbjct:    1 MNRAHPPELKKYMDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRVF 77
[Close]
BLAST of SMED30008182 vs. Planmine SMEST
Match: SMESG000081727.1 (SMESG000081727.1)

HSP 1 Score: 157.532 bits (397), Expect = 1.044e-51
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = -2 
Query:   40 MNRAHPPELKKYMDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRVF 270
            MNRAHPPELKKYMDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRVF
Sbjct:    1 MNRAHPPELKKYMDKRMTLKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRVF 77
[Close]
BLAST of SMED30008182 vs. Planmine SMEST
Match: SMESG000036643.1 (SMESG000036643.1)

HSP 1 Score: 46.9802 bits (110), Expect = 5.606e-8
Identity = 21/50 (42.00%), Postives = 38/50 (76.00%), Query Frame = -2 
Query:   49 RVKGIMRGFDPFMNIVLENAVEID-KDNQEVNIGTIVIRGNSISILEAVD 195
            R++GI+ GFD +MN+VL++AVE   K   E  IG I+++G++I+++++ D
Sbjct:   42 RIEGIILGFDEYMNVVLDDAVERHMKSGSEKKIGRIMLKGDAITLIQSCD 91
The following BLAST results are available for this feature:
BLAST of SMED30008182 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
SNRPG3.857e-3263.16small nuclear ribonucleoprotein polypeptide G [Sou... [more]
SNRPG6.518e-2460.00small nuclear ribonucleoprotein polypeptide G [Sou... [more]
SNRPG3.814e-2360.94small nuclear ribonucleoprotein polypeptide G [Sou... [more]
SNRPG3.814e-2360.94small nuclear ribonucleoprotein polypeptide G [Sou... [more]
SNRPG3.814e-2360.94small nuclear ribonucleoprotein polypeptide G [Sou... [more]
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BLAST of SMED30008182 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 3
Match NameE-valueIdentityDescription
snr-74.333e-3264.47Probable small nuclear ribonucleoprotein G [Sourc... [more]
lsm-76.568e-1032.00LSM Sm-like protein [Source:UniProtKB/TrEMBL;Acc:... [more]
lsm-68.224e-636.36LSM Sm-like protein [Source:UniProtKB/TrEMBL;Acc:... [more]
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BLAST of SMED30008182 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5
Match NameE-valueIdentityDescription
SNRPG8.134e-3469.74gene:FBgn0261791 transcript:FBtr0112993[more]
SNRPG8.134e-3469.74gene:FBgn0261791 transcript:FBtr0074377[more]
LSm71.148e-932.05gene:FBgn0261068 transcript:FBtr0343770[more]
LSm71.148e-932.05gene:FBgn0261068 transcript:FBtr0080934[more]
LSm71.148e-932.05gene:FBgn0261068 transcript:FBtr0308804[more]
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BLAST of SMED30008182 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
snrpg2.726e-3060.53small nuclear ribonucleoprotein polypeptide G [Sou... [more]
lsm71.858e-1034.67LSM7 homolog, U6 small nuclear RNA and mRNA degrad... [more]
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BLAST of SMED30008182 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 3
Match NameE-valueIdentityDescription
snrpg1.805e-3060.53small nuclear ribonucleoprotein polypeptide G [Sou... [more]
lsm72.676e-1034.67LSM7 homolog, U6 small nuclear RNA and mRNA degrad... [more]
lsm72.885e-1034.67LSM7 homolog, U6 small nuclear RNA and mRNA degrad... [more]
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BLAST of SMED30008182 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 4
Match NameE-valueIdentityDescription
Snrpg2.648e-3263.16small nuclear ribonucleoprotein polypeptide G [Sou... [more]
Lsm72.769e-1036.00LSM7 homolog, U6 small nuclear RNA and mRNA degrad... [more]
Lsm78.426e-840.38LSM7 homolog, U6 small nuclear RNA and mRNA degrad... [more]
Snrpe8.813e-638.00small nuclear ribonucleoprotein E [Source:MGI Symb... [more]
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BLAST of SMED30008182 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q9VXE0|RUXG_DROME8.154e-3369.74Probable small nuclear ribonucleoprotein G OS=Dros... [more]
sp|P62309|RUXG_MOUSE1.852e-3163.16Small nuclear ribonucleoprotein G OS=Mus musculus ... [more]
sp|P62308|RUXG_HUMAN1.852e-3163.16Small nuclear ribonucleoprotein G OS=Homo sapiens ... [more]
sp|Q3ZBL0|RUXG_BOVIN1.852e-3163.16Small nuclear ribonucleoprotein G OS=Bos taurus OX... [more]
sp|Q9N4G9|RUXG_CAEEL5.512e-3164.47Probable small nuclear ribonucleoprotein G OS=Caen... [more]
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BLAST of SMED30008182 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A132AEA12.293e-3368.42Small nuclear ribonucleoprotein G OS=Sarcoptes sca... [more]
A0A1Y3AYC33.632e-3265.79Small nuclear ribonucleoprotein G OS=Euroglyphus m... [more]
B3MRC46.704e-3171.05Small nuclear ribonucleoprotein G OS=Drosophila an... [more]
B3NVJ96.704e-3171.05Small nuclear ribonucleoprotein G OS=Drosophila er... [more]
B4PXV56.704e-3171.05Small nuclear ribonucleoprotein G OS=Drosophila ya... [more]
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BLAST of SMED30008182 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 3
Match NameE-valueIdentityDescription
snrpg3.147e-3160.53small nuclear ribonucleoprotein polypeptide G [Sou... [more]
snrpg4.898e-2357.38small nuclear ribonucleoprotein polypeptide G [Sou... [more]
lsm74.766e-1033.33LSM7 homolog, U6 small nuclear RNA and mRNA degrad... [more]
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BLAST of SMED30008182 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
snrpg1.298e-3057.89small nuclear ribonucleoprotein polypeptide G [Sou... [more]
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BLAST of SMED30008182 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 5
Match NameE-valueIdentityDescription
SMX26.761e-2152.70Core Sm protein Sm G; part of heteroheptameric com... [more]
LSM73.656e-834.52Lsm (Like Sm) protein; part of heteroheptameric co... [more]
LSM51.272e-632.86Lsm (Like Sm) protein; part of heteroheptameric co... [more]
LSM31.440e-633.33Lsm (Like Sm) protein; part of heteroheptameric co... [more]
SME19.915e-636.84Core Sm protein Sm E; part of heteroheptameric com... [more]
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BLAST of SMED30008182 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 2
Match NameE-valueIdentityDescription
EDO488136.259e-3262.34Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO410021.807e-929.33Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of SMED30008182 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 4
Match NameE-valueIdentityDescription
snrpg2.961e-3160.53small nuclear ribonucleoprotein polypeptide G [Sou... [more]
snrpg4.896e-2256.67small nuclear ribonucleoprotein polypeptide G [Sou... [more]
lsm71.724e-1034.67LSM7 homolog, U6 small nuclear RNA and mRNA degrad... [more]
lsm72.309e-1034.67LSM7 homolog, U6 small nuclear RNA and mRNA degrad... [more]
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BLAST of SMED30008182 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3
Match NameE-valueIdentityDescription
SMESG000081731.11.044e-51100.00SMESG000081731.1[more]
SMESG000081727.11.044e-51100.00SMESG000081727.1[more]
SMESG000036643.15.606e-842.00SMESG000036643.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30008182 ID=SMED30008182|Name=SMED30008182|organism=Schmidtea mediterranea sexual|type=transcript|length=319bp
CAAATGAATAACTTTATTATTTGTAATATTTACACATTAGAAAACACGAT
CAACAGCTTCAAGAATACTAATACTGTTCCCTCTAATTACAATAGTGCCG
ATATTTACTTCCTGATTATCTTTGTCAATCTCAACAGCATTTTCCAAAAC
TATATTCATAAATGGATCGAATCCTCGCATAATACCTTTAACACGACGGT
GGCCATTTAGTTTTAGAGTCATTCTCTTATCCATGTATTTTTTCAGTTCA
GGAGGATGGGCTCGATTCATTTTTAAGATTTGAAATAGTTAAAATTAAAA
CAATATTTAAATAAAAAGA
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000429neoblast
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR034098Sm_G
IPR001163LSM_dom_euk/arc
IPR010920LSM_dom_sf
Vocabulary: biological process
TermDefinition
GO:0000387spliceosomal snRNP assembly
Vocabulary: cellular component
TermDefinition
GO:0005681spliceosomal complex
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 7..72
e-value: 4.7E-24
score: 95.9
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 8..70
e-value: 5.6E-22
score: 77.2
NoneNo IPR availableGENE3DG3DSA:2.30.30.100coord: 1..76
e-value: 2.8E-26
score: 93.0
NoneNo IPR availablePANTHERPTHR10553SMALL NUCLEAR RIBONUCLEOPROTEINcoord: 1..76
NoneNo IPR availablePANTHERPTHR10553:SF20SMALL NUCLEAR RIBONUCLEOPROTEIN G-RELATEDcoord: 1..76
IPR034098Small nuclear ribonucleoprotein GCDDcd01719Sm_Gcoord: 5..74
e-value: 2.30681E-38
score: 119.929
IPR010920LSM domain superfamilySUPERFAMILYSSF50182Sm-like ribonucleoproteinscoord: 7..75