Homologous-pairing protein 2 homolog

Overview
NameHomologous-pairing protein 2 homolog
Smed IDSMED30008166
Length (bp)1980
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Homologous-pairing protein 2 homolog (SMED30008166) t-SNE clustered cells

Violin plots show distribution of expression levels for Homologous-pairing protein 2 homolog (SMED30008166) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Homologous-pairing protein 2 homolog (SMED30008166) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Homologous-pairing protein 2 homolog (SMED30008166) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30008166

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 1

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30008166SMESG000064317.1 SmedASXL_011273SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Homologous-pairing protein 2 homolog vs. Ensembl Human
Match: PSMC3IP (PSMC3 interacting protein [Source:HGNC Symbol;Acc:HGNC:17928])

HSP 1 Score: 83.9593 bits (206), Expect = 2.903e-26
Identity = 42/134 (31.34%), Postives = 83/134 (61.94%), Query Frame = 1 
Query:  361 QYLISQNRPYSASDIFNYFNKD--IGKTSILKSLDCLVEEGKVKEKLYGKQKVYLVNQDILSEINNDEMFILQKKITDLQNEFNDVVIEFNKAESELKMLASSMSSSEAKLKLEQVNQKILEKSDKLNKLKENT 756
            +YL  QNRPYS+ D+F    ++  +GK  ++K+L+ L ++GK+KEK+YGKQK+Y  +QD    +++ ++ +L  KI  L  +   +       E+ELK L+S++++ E + +++++ ++     ++L  +K  T
Sbjct:   18 RYLQEQNRPYSSQDVFGNLQREHGLGKAVVVKTLEQLAQQGKIKEKMYGKQKIYFADQDQFDMVSDADLQVLDGKIVALTAKVQSLQQSCRYMEAELKELSSALTTPEMQKEIQELKKECAGYRERLKNIKAAT 151

HSP 2 Score: 55.8398 bits (133), Expect = 2.903e-26
Identity = 24/35 (68.57%), Postives = 28/35 (80.00%), Query Frame = 3 
Query:  789 ERTKLVKEWRKRKRMANEMMDAVLENYPQTKKQFL 893
            ER K  KEWRKRKRMA E+ DA+LE YP++KKQF 
Sbjct:  165 ERQKYCKEWRKRKRMATELSDAILEGYPKSKKQFF 199
[Close]
BLAST of Homologous-pairing protein 2 homolog vs. Ensembl Human
Match: PSMC3IP (PSMC3 interacting protein [Source:HGNC Symbol;Acc:HGNC:17928])

HSP 1 Score: 72.0182 bits (175), Expect = 1.430e-14
Identity = 32/79 (40.51%), Postives = 54/79 (68.35%), Query Frame = 1 
Query:  361 QYLISQNRPYSASDIFNYFNKD--IGKTSILKSLDCLVEEGKVKEKLYGKQKVYLVNQDILSEINNDEMFILQKKITDL 591
            +YL  QNRPYS+ D+F    ++  +GK  ++K+L+ L ++GK+KEK+YGKQK+Y  +QD    +++ ++ +L  KI  L
Sbjct:   18 RYLQEQNRPYSSQDVFGNLQREHGLGKAVVVKTLEQLAQQGKIKEKMYGKQKIYFADQDQFDMVSDADLQVLDGKIVAL 96
[Close]
BLAST of Homologous-pairing protein 2 homolog vs. Ensembl Human
Match: PSMC3IP (PSMC3 interacting protein [Source:HGNC Symbol;Acc:HGNC:17928])

HSP 1 Score: 72.0182 bits (175), Expect = 1.048e-13
Identity = 32/79 (40.51%), Postives = 54/79 (68.35%), Query Frame = 1 
Query:  361 QYLISQNRPYSASDIFNYFNKD--IGKTSILKSLDCLVEEGKVKEKLYGKQKVYLVNQDILSEINNDEMFILQKKITDL 591
            +YL  QNRPYS+ D+F    ++  +GK  ++K+L+ L ++GK+KEK+YGKQK+Y  +QD    +++ ++ +L  KI  L
Sbjct:   18 RYLQEQNRPYSSQDVFGNLQREHGLGKAVVVKTLEQLAQQGKIKEKMYGKQKIYFADQDQFDMVSDADLQVLDGKIVAL 96

HSP 2 Score: 55.8398 bits (133), Expect = 3.760e-8
Identity = 24/35 (68.57%), Postives = 28/35 (80.00%), Query Frame = 3 
Query:  789 ERTKLVKEWRKRKRMANEMMDAVLENYPQTKKQFL 893
            ER K  KEWRKRKRMA E+ DA+LE YP++KKQF 
Sbjct:  153 ERQKYCKEWRKRKRMATELSDAILEGYPKSKKQFF 187
[Close]
BLAST of Homologous-pairing protein 2 homolog vs. Ensembl Human
Match: PSMC3IP (PSMC3 interacting protein [Source:HGNC Symbol;Acc:HGNC:17928])

HSP 1 Score: 55.4546 bits (132), Expect = 1.190e-13
Identity = 24/35 (68.57%), Postives = 28/35 (80.00%), Query Frame = 3 
Query:  789 ERTKLVKEWRKRKRMANEMMDAVLENYPQTKKQFL 893
            ER K  KEWRKRKRMA E+ DA+LE YP++KKQF 
Sbjct:  102 ERQKYCKEWRKRKRMATELSDAILEGYPKSKKQFF 136

HSP 2 Score: 41.5874 bits (96), Expect = 1.190e-13
Identity = 22/88 (25.00%), Postives = 50/88 (56.82%), Query Frame = 1 
Query:  493 LYGKQKVYLVNQDILSEINNDEMFILQKKITDLQNEFNDVVIEFNKAESELKMLASSMSSSEAKLKLEQVNQKILEKSDKLNKLKENT 756
            +YGKQK+Y  +QD    +++ ++ +L  KI  L  +   +       E+ELK L+S++++ E + +++++ ++     ++L  +K  T
Sbjct:    1 MYGKQKIYFADQDQFDMVSDADLQVLDGKIVALTAKVQSLQQSCRYMEAELKELSSALTTPEMQKEIQELKKECAGYRERLKNIKAAT 88
[Close]
BLAST of Homologous-pairing protein 2 homolog vs. Ensembl Human
Match: PSMC3IP (PSMC3 interacting protein [Source:HGNC Symbol;Acc:HGNC:17928])

HSP 1 Score: 64.6994 bits (156), Expect = 1.865e-12
Identity = 27/61 (44.26%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:  361 QYLISQNRPYSASDIFNYFNKD--IGKTSILKSLDCLVEEGKVKEKLYGKQKVYLVNQDIL 537
            +YL  QNRPYS+ D+F    ++  +GK  ++K+L+ L ++GK+KEK+YGKQK+Y  +Q + 
Sbjct:   18 RYLQEQNRPYSSQDVFGNLQREHGLGKAVVVKTLEQLAQQGKIKEKMYGKQKIYFADQTLW 78
[Close]
BLAST of Homologous-pairing protein 2 homolog vs. Ensembl Zebrafish
Match: psmc3ip (PSMC3 interacting protein [Source:ZFIN;Acc:ZDB-GENE-040625-125])

HSP 1 Score: 85.8853 bits (211), Expect = 5.900e-26
Identity = 42/137 (30.66%), Postives = 86/137 (62.77%), Query Frame = 1 
Query:  352 KVYQYLISQNRPYSASDIFNYFNK--DIGKTSILKSLDCLVEEGKVKEKLYGKQKVYLVNQDILSEINNDEMFILQKKITDLQNEFNDVVIEFNKAESELKMLASSMSSSEAKLKLEQVNQKILEKSDKLNKLKENT 756
            ++  YL  +NRP+SA D+F    K   +GKT+++K+++ L +EGK+KEK+YGKQK+Y  +Q    ++++ ++  +  +I ++  E   +     + ++ELK L SS++++E K +++++  +I    ++L  +K  T
Sbjct:   11 QILAYLNEKNRPFSAQDVFTNLQKQCGLGKTAVVKAVEQLAQEGKIKEKVYGKQKIYFADQSQFEDVSDADLRKMDDRIGEINTEVQSISQSCRQLDTELKELNSSLTTAEMKAQIQELQAEISGYRERLENIKSAT 147

HSP 2 Score: 52.373 bits (124), Expect = 5.900e-26
Identity = 22/35 (62.86%), Postives = 28/35 (80.00%), Query Frame = 3 
Query:  789 ERTKLVKEWRKRKRMANEMMDAVLENYPQTKKQFL 893
            ER   VKEWRKRKR+ ++MM A+LE YP++KK FL
Sbjct:  161 ERETYVKEWRKRKRLVSDMMGAILEGYPKSKKHFL 195
[Close]
BLAST of Homologous-pairing protein 2 homolog vs. Ensembl Zebrafish
Match: psmc3ip (PSMC3 interacting protein [Source:ZFIN;Acc:ZDB-GENE-040625-125])

HSP 1 Score: 69.3218 bits (168), Expect = 9.810e-14
Identity = 30/89 (33.71%), Postives = 58/89 (65.17%), Query Frame = 1 
Query:  352 KVYQYLISQNRPYSASDIFNYFNK--DIGKTSILKSLDCLVEEGKVKEKLYGKQKVYLVNQDILSEINNDEMFILQKKITDLQNEFNDV 612
            ++  YL  +NRP+SA D+F    K   +GKT+++K+++ L +EGK+KEK+YGKQK+Y  +Q    ++++ ++  +  +I ++  E   +
Sbjct:   11 QILAYLNEKNRPFSAQDVFTNLQKQCGLGKTAVVKAVEQLAQEGKIKEKVYGKQKIYFADQSQFEDVSDADLRKMDDRIGEINTEVQSI 99
[Close]
BLAST of Homologous-pairing protein 2 homolog vs. Ensembl Zebrafish
Match: psmc3ip (PSMC3 interacting protein [Source:ZFIN;Acc:ZDB-GENE-040625-125])

HSP 1 Score: 69.3218 bits (168), Expect = 1.980e-13
Identity = 30/89 (33.71%), Postives = 58/89 (65.17%), Query Frame = 1 
Query:  352 KVYQYLISQNRPYSASDIFNYFNK--DIGKTSILKSLDCLVEEGKVKEKLYGKQKVYLVNQDILSEINNDEMFILQKKITDLQNEFNDV 612
            ++  YL  +NRP+SA D+F    K   +GKT+++K+++ L +EGK+KEK+YGKQK+Y  +Q    ++++ ++  +  +I ++  E   +
Sbjct:   11 QILAYLNEKNRPFSAQDVFTNLQKQCGLGKTAVVKAVEQLAQEGKIKEKVYGKQKIYFADQSQFEDVSDADLRKMDDRIGEINTEVQSI 99
[Close]
BLAST of Homologous-pairing protein 2 homolog vs. Ensembl Xenopus
Match: psmc3ip (PSMC3 interacting protein [Source:NCBI gene;Acc:100170440])

HSP 1 Score: 83.9593 bits (206), Expect = 1.180e-25
Identity = 42/110 (38.18%), Postives = 73/110 (66.36%), Query Frame = 1 
Query:  355 VYQYLISQNRPYSASDIFNYFNKD--IGKTSILKSLDCLVEEGKVKEKLYGKQKVYLVNQDILSEINNDEMFILQKKITDLQNEFNDVVIEFNKAESELKMLASSMSSSE 678
            + +YL  QNRPYS  D+F+   +D  +GKT+++K+++ L ++GK+KEK+YGKQK+Y  +Q+    +++ E+  L  +IT+L +          + ESELK L+SS+++ E
Sbjct:   13 ILKYLNDQNRPYSTQDVFSNLQRDHGLGKTAVVKAMESLAQKGKIKEKVYGKQKIYFADQEQFPNVSDSELKNLDAEITELSSRLQSSQQSCRQLESELKDLSSSLTTEE 122

HSP 2 Score: 53.9138 bits (128), Expect = 1.180e-25
Identity = 22/36 (61.11%), Postives = 28/36 (77.78%), Query Frame = 3 
Query:  789 ERTKLVKEWRKRKRMANEMMDAVLENYPQTKKQFLV 896
            +R    KEW+KRKRMA ++ DAVLE YP++KKQF V
Sbjct:  162 DRKHFCKEWKKRKRMATDIFDAVLEGYPKSKKQFFV 197
[Close]
BLAST of Homologous-pairing protein 2 homolog vs. Ensembl Xenopus
Match: psmc3ip (PSMC3 interacting protein [Source:NCBI gene;Acc:100170440])

HSP 1 Score: 83.9593 bits (206), Expect = 3.929e-25
Identity = 42/110 (38.18%), Postives = 73/110 (66.36%), Query Frame = 1 
Query:  355 VYQYLISQNRPYSASDIFNYFNKD--IGKTSILKSLDCLVEEGKVKEKLYGKQKVYLVNQDILSEINNDEMFILQKKITDLQNEFNDVVIEFNKAESELKMLASSMSSSE 678
            + +YL  QNRPYS  D+F+   +D  +GKT+++K+++ L ++GK+KEK+YGKQK+Y  +Q+    +++ E+  L  +IT+L +          + ESELK L+SS+++ E
Sbjct:   13 ILKYLNDQNRPYSTQDVFSNLQRDHGLGKTAVVKAMESLAQKGKIKEKVYGKQKIYFADQEQFPNVSDSELKNLDAEITELSSRLQSSQQSCRQLESELKDLSSSLTTEE 122

HSP 2 Score: 52.373 bits (124), Expect = 3.929e-25
Identity = 21/35 (60.00%), Postives = 27/35 (77.14%), Query Frame = 3 
Query:  789 ERTKLVKEWRKRKRMANEMMDAVLENYPQTKKQFL 893
            +R    KEW+KRKRMA ++ DAVLE YP++KKQF 
Sbjct:  162 DRKHFCKEWKKRKRMATDIFDAVLEGYPKSKKQFF 196
[Close]
BLAST of Homologous-pairing protein 2 homolog vs. Ensembl Xenopus
Match: psmc3ip (PSMC3 interacting protein [Source:NCBI gene;Acc:100170440])

HSP 1 Score: 83.5741 bits (205), Expect = 4.673e-25
Identity = 42/110 (38.18%), Postives = 73/110 (66.36%), Query Frame = 1 
Query:  355 VYQYLISQNRPYSASDIFNYFNKD--IGKTSILKSLDCLVEEGKVKEKLYGKQKVYLVNQDILSEINNDEMFILQKKITDLQNEFNDVVIEFNKAESELKMLASSMSSSE 678
            + +YL  QNRPYS  D+F+   +D  +GKT+++K+++ L ++GK+KEK+YGKQK+Y  +Q+    +++ E+  L  +IT+L +          + ESELK L+SS+++ E
Sbjct:    8 ILKYLNDQNRPYSTQDVFSNLQRDHGLGKTAVVKAMESLAQKGKIKEKVYGKQKIYFADQEQFPNVSDSELKNLDAEITELSSRLQSSQQSCRQLESELKDLSSSLTTEE 117

HSP 2 Score: 51.9878 bits (123), Expect = 4.673e-25
Identity = 21/35 (60.00%), Postives = 27/35 (77.14%), Query Frame = 3 
Query:  789 ERTKLVKEWRKRKRMANEMMDAVLENYPQTKKQFL 893
            +R    KEW+KRKRMA ++ DAVLE YP++KKQF 
Sbjct:  157 DRKHFCKEWKKRKRMATDIFDAVLEGYPKSKKQFF 191
[Close]
BLAST of Homologous-pairing protein 2 homolog vs. Ensembl Xenopus
Match: psmc3ip (PSMC3 interacting protein [Source:NCBI gene;Acc:100170440])

HSP 1 Score: 83.9593 bits (206), Expect = 9.389e-18
Identity = 42/110 (38.18%), Postives = 73/110 (66.36%), Query Frame = 1 
Query:  355 VYQYLISQNRPYSASDIFNYFNKD--IGKTSILKSLDCLVEEGKVKEKLYGKQKVYLVNQDILSEINNDEMFILQKKITDLQNEFNDVVIEFNKAESELKMLASSMSSSE 678
            + +YL  QNRPYS  D+F+   +D  +GKT+++K+++ L ++GK+KEK+YGKQK+Y  +Q+    +++ E+  L  +IT+L +          + ESELK L+SS+++ E
Sbjct:   13 ILKYLNDQNRPYSTQDVFSNLQRDHGLGKTAVVKAMESLAQKGKIKEKVYGKQKIYFADQEQFPNVSDSELKNLDAEITELSSRLQSSQQSCRQLESELKDLSSSLTTEE 122
[Close]
BLAST of Homologous-pairing protein 2 homolog vs. Ensembl Mouse
Match: Psmc3ip (proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein [Source:MGI Symbol;Acc:MGI:1098610])

HSP 1 Score: 88.5817 bits (218), Expect = 4.183e-27
Identity = 44/136 (32.35%), Postives = 83/136 (61.03%), Query Frame = 1 
Query:  355 VYQYLISQNRPYSASDIFNYFNKD--IGKTSILKSLDCLVEEGKVKEKLYGKQKVYLVNQDILSEINNDEMFILQKKITDLQNEFNDVVIEFNKAESELKMLASSMSSSEAKLKLEQVNQKILEKSDKLNKLKENT 756
            + +YL  QNRPYSA D+F    K+  +GK +++K+LD L +EGK+KEK YGKQK+Y  +Q+    +++ ++  L   I  L  +   +       E+ELK L S++++ E + +++++ ++  + +++L  +K  T
Sbjct:   16 ILRYLQEQNRPYSAQDVFGNLQKEHGLGKAAVVKALDQLAQEGKIKEKTYGKQKIYFADQNQFDTVSDADLHGLDASIVALTAKVQSLQQSCRHMEAELKELTSALTTPEMQKEIQELKKECAQYTERLKNIKAAT 151

HSP 2 Score: 53.5286 bits (127), Expect = 4.183e-27
Identity = 22/35 (62.86%), Postives = 27/35 (77.14%), Query Frame = 3 
Query:  789 ERTKLVKEWRKRKRMANEMMDAVLENYPQTKKQFL 893
            +R K  KEWRKRKRM  E+ DA+LE YP++KKQF 
Sbjct:  165 DRQKYCKEWRKRKRMTTELCDAILEGYPKSKKQFF 199
[Close]
BLAST of Homologous-pairing protein 2 homolog vs. Ensembl Mouse
Match: Psmc3ip (proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein [Source:MGI Symbol;Acc:MGI:1098610])

HSP 1 Score: 66.6254 bits (161), Expect = 3.078e-13
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:  355 VYQYLISQNRPYSASDIFNYFNKD--IGKTSILKSLDCLVEEGKVKEKLYGKQKVYLVNQ 528
            + +YL  QNRPYSA D+F    K+  +GK +++K+LD L +EGK+KEK YGKQK+Y  +Q
Sbjct:   16 ILRYLQEQNRPYSAQDVFGNLQKEHGLGKAAVVKALDQLAQEGKIKEKTYGKQKIYFADQ 75
[Close]
BLAST of Homologous-pairing protein 2 homolog vs. UniProt/SwissProt
Match: sp|Q91ZY6|HOP2_RAT (Homologous-pairing protein 2 homolog OS=Rattus norvegicus OX=10116 GN=Psmc3ip PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 3.604e-27
Identity = 45/136 (33.09%), Postives = 82/136 (60.29%), Query Frame = 1 
Query:  355 VYQYLISQNRPYSASDIFNYFNKD--IGKTSILKSLDCLVEEGKVKEKLYGKQKVYLVNQDILSEINNDEMFILQKKITDLQNEFNDVVIEFNKAESELKMLASSMSSSEAKLKLEQVNQKILEKSDKLNKLKENT 756
            V +YL  QNRPYSA D+F    K+  +GK +++K+LD L ++GK+KEK YGKQK+Y  +QD    +++ ++  L   I  L  +   +       E+ELK L S++++ E + +++++ ++    +++L  +K  T
Sbjct:   16 VLRYLQEQNRPYSAQDVFGNLQKEHGLGKAAVVKALDQLAQQGKIKEKTYGKQKIYFADQDQFDTVSDADLHSLDASIMALTAKVQGLQQSCRHMEAELKELTSALTTPEMQTEIQELKKECARYTERLKNIKAAT 151

HSP 2 Score: 54.6842 bits (130), Expect = 3.604e-27
Identity = 23/35 (65.71%), Postives = 27/35 (77.14%), Query Frame = 3 
Query:  789 ERTKLVKEWRKRKRMANEMMDAVLENYPQTKKQFL 893
            ER K  KEWRKRKRM  E+ DA+LE YP++KKQF 
Sbjct:  165 ERQKYCKEWRKRKRMTTELCDAILEGYPKSKKQFF 199
[Close]
BLAST of Homologous-pairing protein 2 homolog vs. UniProt/SwissProt
Match: sp|O35047|HOP2_MOUSE (Homologous-pairing protein 2 homolog OS=Mus musculus OX=10090 GN=Psmc3ip PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.540e-26
Identity = 44/136 (32.35%), Postives = 83/136 (61.03%), Query Frame = 1 
Query:  355 VYQYLISQNRPYSASDIFNYFNKD--IGKTSILKSLDCLVEEGKVKEKLYGKQKVYLVNQDILSEINNDEMFILQKKITDLQNEFNDVVIEFNKAESELKMLASSMSSSEAKLKLEQVNQKILEKSDKLNKLKENT 756
            + +YL  QNRPYSA D+F    K+  +GK +++K+LD L +EGK+KEK YGKQK+Y  +Q+    +++ ++  L   I  L  +   +       E+ELK L S++++ E + +++++ ++  + +++L  +K  T
Sbjct:   16 ILRYLQEQNRPYSAQDVFGNLQKEHGLGKAAVVKALDQLAQEGKIKEKTYGKQKIYFADQNQFDTVSDADLHGLDASIVALTAKVQSLQQSCRHMEAELKELTSALTTPEMQKEIQELKKECAQYTERLKNIKAAT 151

HSP 2 Score: 53.5286 bits (127), Expect = 2.540e-26
Identity = 22/35 (62.86%), Postives = 27/35 (77.14%), Query Frame = 3 
Query:  789 ERTKLVKEWRKRKRMANEMMDAVLENYPQTKKQFL 893
            +R K  KEWRKRKRM  E+ DA+LE YP++KKQF 
Sbjct:  165 DRQKYCKEWRKRKRMTTELCDAILEGYPKSKKQFF 199
[Close]
BLAST of Homologous-pairing protein 2 homolog vs. UniProt/SwissProt
Match: sp|Q9P2W1|HOP2_HUMAN (Homologous-pairing protein 2 homolog OS=Homo sapiens OX=9606 GN=PSMC3IP PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.277e-25
Identity = 42/134 (31.34%), Postives = 83/134 (61.94%), Query Frame = 1 
Query:  361 QYLISQNRPYSASDIFNYFNKD--IGKTSILKSLDCLVEEGKVKEKLYGKQKVYLVNQDILSEINNDEMFILQKKITDLQNEFNDVVIEFNKAESELKMLASSMSSSEAKLKLEQVNQKILEKSDKLNKLKENT 756
            +YL  QNRPYS+ D+F    ++  +GK  ++K+L+ L ++GK+KEK+YGKQK+Y  +QD    +++ ++ +L  KI  L  +   +       E+ELK L+S++++ E + +++++ ++     ++L  +K  T
Sbjct:   18 RYLQEQNRPYSSQDVFGNLQREHGLGKAVVVKTLEQLAQQGKIKEKMYGKQKIYFADQDQFDMVSDADLQVLDGKIVALTAKVQSLQQSCRYMEAELKELSSALTTPEMQKEIQELKKECAGYRERLKNIKAAT 151

HSP 2 Score: 55.8398 bits (133), Expect = 1.277e-25
Identity = 24/35 (68.57%), Postives = 28/35 (80.00%), Query Frame = 3 
Query:  789 ERTKLVKEWRKRKRMANEMMDAVLENYPQTKKQFL 893
            ER K  KEWRKRKRMA E+ DA+LE YP++KKQF 
Sbjct:  165 ERQKYCKEWRKRKRMATELSDAILEGYPKSKKQFF 199
[Close]
BLAST of Homologous-pairing protein 2 homolog vs. UniProt/SwissProt
Match: sp|Q63ZL2|HOP2_XENLA (Homologous-pairing protein 2 homolog OS=Xenopus laevis OX=8355 GN=psmc3ip PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.281e-24
Identity = 41/110 (37.27%), Postives = 73/110 (66.36%), Query Frame = 1 
Query:  355 VYQYLISQNRPYSASDIFNYFNKD--IGKTSILKSLDCLVEEGKVKEKLYGKQKVYLVNQDILSEINNDEMFILQKKITDLQNEFNDVVIEFNKAESELKMLASSMSSSE 678
            + +YL  QNRPYS  D+F+   +D  +GKT+++K+++ L ++GK+KEK+YGKQK+Y  +Q+    +++ E+  L  ++T+L ++         + ESELK L SS+++ E
Sbjct:   13 ILKYLNDQNRPYSTQDVFSNLQRDHGLGKTAVVKTMELLAQKGKIKEKVYGKQKIYFADQEQFPSVSDSELKDLDAQVTELSSKLQSSQQSCRQLESELKDLTSSLTTEE 122

HSP 2 Score: 52.7582 bits (125), Expect = 1.281e-24
Identity = 21/35 (60.00%), Postives = 27/35 (77.14%), Query Frame = 3 
Query:  789 ERTKLVKEWRKRKRMANEMMDAVLENYPQTKKQFL 893
            ER    KEW+KRKRMA ++ DA+LE YP++KKQF 
Sbjct:  162 ERKHFCKEWKKRKRMATDIFDAILEGYPKSKKQFF 196
[Close]
BLAST of Homologous-pairing protein 2 homolog vs. UniProt/SwissProt
Match: sp|Q9HGK2|HOP2_SCHPO (Homologous-pairing protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=meu13 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.228e-15
Identity = 46/134 (34.33%), Postives = 80/134 (59.70%), Query Frame = 1 
Query:  355 VYQYLISQNRPYSASDIFNYFNKDIGKTSILKSLDCLVEEGKVKEKLYGKQKVYLVNQDILSEINNDEMFILQKKITDLQNEFNDVVIEFNKAESELKMLASSMSSSEAKLKLEQVNQKILEKSDKLNKLKENT 756
            VY+YL   NRPYSA+D+       + K    K+L+ L + G +  KLYGKQ V++  QD L+    +E+  ++K+I +L++E + V   + +   EL+ L +S+S +E + K++ ++++I E S KL  L+  T
Sbjct:   21 VYEYLRKTNRPYSATDVSANLKNVVSKQVAQKALEQLRDTGLIHGKLYGKQSVFVCLQDDLAAATPEELAEMEKQIQELKDEVSVVKTLYKEKCIELQALNNSLSPAEIREKIQSIDKEIEETSSKLESLRNGT 154
[Close]
BLAST of Homologous-pairing protein 2 homolog vs. TrEMBL
Match: K1P0R0 (Uncharacterized protein OS=Crassostrea gigas OX=29159 GN=CGI_10001111 PE=4 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.068e-28
Identity = 54/133 (40.60%), Postives = 90/133 (67.67%), Query Frame = 1 
Query:  355 VYQYLISQNRPYSASDIFNYFNKDIGKTSILKSLDCLVEEGKVKEKLYGKQKVYLVNQDILSEINNDEMFILQKKITDLQNEFNDVVIEFNKAESELKMLASSMSSSEAKLKLEQVNQKILEKSDKLNKLKEN 753
            V +YL  QNRPYSA DIFN  +K+ GKT+I+K+ + L + G++KEK+YGKQKVY+ +Q    ++++ E+  +  +I+DL  +  +   E  + ++EL+ L SS+S+ +A L+L+Q+ ++    S KLN LK+ 
Sbjct:   13 VVEYLNRQNRPYSAIDIFNNLHKEYGKTAIVKACESLSQSGQIKEKVYGKQKVYVADQGQFPDVDDGEIRDMDARISDLSAQCKEKDEEVRRLDAELRGLNSSISTEDAILQLKQLTEECEACSRKLNTLKDG 145

HSP 2 Score: 51.2174 bits (121), Expect = 2.068e-28
Identity = 21/33 (63.64%), Postives = 28/33 (84.85%), Query Frame = 3 
Query:  792 RTKLVKEWRKRKRMANEMMDAVLENYPQTKKQF 890
            R K VKEWRKRKR++N+++ A+LE YP+TKKQ 
Sbjct:  161 RKKYVKEWRKRKRISNDILGAILEGYPKTKKQL 193
[Close]
BLAST of Homologous-pairing protein 2 homolog vs. TrEMBL
Match: A0A0L8HMZ8 (Uncharacterized protein OS=Octopus bimaculoides OX=37653 GN=OCBIM_22010919mg PE=4 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.238e-28
Identity = 60/134 (44.78%), Postives = 84/134 (62.69%), Query Frame = 1 
Query:  346 QDKVYQYLISQNRPYSASDIFNYFNKDIGKTSILKSLDCLVEEGKVKEKLYGKQKVYLVNQDILSEINNDEMFILQKKITDLQNEFNDVVIEFNKAESELKMLASSMSSSEAKLKLEQVNQKILEKSDKLNKLK 747
            Q  V +YL  QNRPYSA DIFN  +K+ GKT++ KSLD L E GK+K+K YGKQ VY+ NQD    +++ EM  L+  I  L ++  ++  E N  E E K ++SS+ + EA+ +LE   +     S+KL KLK
Sbjct:    8 QKAVLEYLNQQNRPYSAIDIFNNLHKEFGKTAVTKSLDELAESGKIKKKTYGKQCVYVANQDNFPTVSDAEMKTLETDIQKLTSKLQNLQNEVNLLEKEQKQISSSLPTEEAQKQLETYTKDNERLSEKLAKLK 141

HSP 2 Score: 53.1434 bits (126), Expect = 2.238e-28
Identity = 22/34 (64.71%), Postives = 29/34 (85.29%), Query Frame = 3 
Query:  789 ERTKLVKEWRKRKRMANEMMDAVLENYPQTKKQF 890
            ER K VKEW+KRKRMAN++++A+LE YP+TKK  
Sbjct:  159 ERQKCVKEWKKRKRMANDILNAILEGYPKTKKHL 192
[Close]
BLAST of Homologous-pairing protein 2 homolog vs. TrEMBL
Match: R7VAA4 (Uncharacterized protein OS=Capitella teleta OX=283909 GN=CAPTEDRAFT_203418 PE=4 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.923e-28
Identity = 52/140 (37.14%), Postives = 85/140 (60.71%), Query Frame = 1 
Query:  334 IMSDQDKVYQYLISQNRPYSASDIFNYFNKDIGKTSILKSLDCLVEEGKVKEKLYGKQKVYLVNQDILSEINNDEMFILQKKITDLQNEFNDVVIEFNKAESELKMLASSMSSSEAKLKLEQVNQKILEKSDKLNKLKEN 753
            + S +  +  YL  QNRPYSA DI+N  +K  GKT ++KSL+CL   GK++ K YGKQ V++ +Q    E++ DE+  ++ KITDL ++      +    ES+L+ L S++++ +AK +L +  Q+      +LN +K N
Sbjct:   26 VSSCEQSIASYLTKQNRPYSAIDIYNNLHKAFGKTLVVKSLECLASSGKIRSKSYGKQTVFVADQAQFPEVDEDELKCMESKITDLSSKIQSTNEQCRSMESQLRGLNSALTTEQAKERLAEATQECESVGCRLNNIKSN 165

HSP 2 Score: 50.0618 bits (118), Expect = 2.923e-28
Identity = 19/34 (55.88%), Postives = 28/34 (82.35%), Query Frame = 3 
Query:  792 RTKLVKEWRKRKRMANEMMDAVLENYPQTKKQFL 893
            R K VKEWRKRKR+ N++++A+LE YP++KK+  
Sbjct:  189 RAKYVKEWRKRKRLGNDILNAILEGYPKSKKELF 222
[Close]
BLAST of Homologous-pairing protein 2 homolog vs. TrEMBL
Match: C3ZHE3 (Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_265245 PE=4 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.523e-28
Identity = 51/131 (38.93%), Postives = 90/131 (68.70%), Query Frame = 1 
Query:  355 VYQYLISQNRPYSASDIFNYFNKDIGKTSILKSLDCLVEEGKVKEKLYGKQKVYLVNQDILSEINNDEMFILQKKITDLQNEFNDVVIEFNKAESELKMLASSMSSSEAKLKLEQVNQKILEKSDKLNKLK 747
            V +YL  QNRPYSA+D+F+  +K+ GKT++ + L+ L ++GK+KEK+YGKQKVY  +Q +  ++ + EM  + ++I++L ++  +        E+EL+ L SS+++ EAK +L ++ +K  +  +KL+KLK
Sbjct:   13 VLEYLKKQNRPYSATDVFSNLHKEYGKTAVTRVLEELAQKGKIKEKVYGKQKVYCADQSVFPDVKDTEMKDMDQQISELTDKVRNTQAACKGRETELRDLTSSITTQEAKAQLAELTKKCSQYQEKLDKLK 143

HSP 2 Score: 48.9062 bits (115), Expect = 3.523e-28
Identity = 20/31 (64.52%), Postives = 25/31 (80.65%), Query Frame = 3 
Query:  801 LVKEWRKRKRMANEMMDAVLENYPQTKKQFL 893
            +VK+WRKRKRMA EM+DA+LE YP+ KK   
Sbjct:  164 MVKQWRKRKRMATEMLDAILEGYPKRKKDLF 194
[Close]
BLAST of Homologous-pairing protein 2 homolog vs. TrEMBL
Match: W5N3W0 (PSMC3 interacting protein OS=Lepisosteus oculatus OX=7918 PE=4 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.127e-27
Identity = 45/133 (33.83%), Postives = 83/133 (62.41%), Query Frame = 1 
Query:  364 YLISQNRPYSASDIFNYFNK--DIGKTSILKSLDCLVEEGKVKEKLYGKQKVYLVNQDILSEINNDEMFILQKKITDLQNEFNDVVIEFNKAESELKMLASSMSSSEAKLKLEQVNQKILEKSDKLNKLKENT 756
            YL  +NRPYSA D+F    K   +GKT+++K+LD L E+GK++EK YGKQK+Y  +Q   +++++ E+  +  +I++L +    +     + E+EL+ L+SS+++ E   ++E +  +    + +L K+K  T
Sbjct:   16 YLTEKNRPYSAQDVFGNLQKQHGLGKTAVVKALDLLAEQGKIREKAYGKQKIYFADQSQFADVSDTELKGMDGQISELNSRVQTLQQSCRQLEAELRELSSSLTTQEMISEIEALQSECTGYTQRLEKVKSAT 148

HSP 2 Score: 62.7734 bits (151), Expect = 2.127e-27
Identity = 25/35 (71.43%), Postives = 33/35 (94.29%), Query Frame = 3 
Query:  789 ERTKLVKEWRKRKRMANEMMDAVLENYPQTKKQFL 893
            ER++ +KEWRKRKR+AN+MMDA+LE YP++KKQFL
Sbjct:  162 ERSQYIKEWRKRKRLANDMMDAILEGYPKSKKQFL 196
[Close]
BLAST of Homologous-pairing protein 2 homolog vs. Ensembl Cavefish
Match: psmc3ip (PSMC3 interacting protein [Source:NCBI gene;Acc:103045962])

HSP 1 Score: 89.3521 bits (220), Expect = 1.291e-27
Identity = 45/138 (32.61%), Postives = 87/138 (63.04%), Query Frame = 1 
Query:  349 DKVYQYLISQNRPYSASDIFNYFNK--DIGKTSILKSLDCLVEEGKVKEKLYGKQKVYLVNQDILSEINNDEMFILQKKITDLQNEFNDVVIEFNKAESELKMLASSMSSSEAKLKLEQVNQKILEKSDKLNKLKENT 756
            D +  YL  +NRPYSA D+F    K   +GKT+++K+++ L +EGK++EK+YGKQK+Y  +Q   +++++ E+  +  +IT+L N+   V     + ++ELK L S ++++E   +++++  +     ++L K+K  T
Sbjct:   10 DVILAYLNEKNRPYSAQDVFGNLQKQHGLGKTAVVKAMEQLAQEGKIREKVYGKQKIYFADQSQFADVSDAELKEMDSRITELNNQVQAVSHSCRQLDTELKELNSMLTTAEMTSQIQELKAECEGYKERLKKIKSAT 147

HSP 2 Score: 54.299 bits (129), Expect = 1.291e-27
Identity = 23/35 (65.71%), Postives = 30/35 (85.71%), Query Frame = 3 
Query:  789 ERTKLVKEWRKRKRMANEMMDAVLENYPQTKKQFL 893
            ER   VKEW+KRKR+A++MM A+LE YP++KKQFL
Sbjct:  161 ERILYVKEWKKRKRLASDMMGAILEGYPKSKKQFL 195
[Close]
BLAST of Homologous-pairing protein 2 homolog vs. Ensembl Sea Lamprey
Match: psmc3ip (PSMC3 interacting protein [Source:ZFIN;Acc:ZDB-GENE-040625-125])

HSP 1 Score: 85.8853 bits (211), Expect = 2.674e-27
Identity = 50/142 (35.21%), Postives = 83/142 (58.45%), Query Frame = 1 
Query:  328 LLIMSDQDKVYQYLISQNRPYSASDIFNYFNKD--IGKTSILKSLDCLVEEGKVKEKLYGKQKVYLVNQDILSEINNDEMFILQKKITDLQNEFNDVVIEFNKAESELKMLASSMSSSEAKLKLEQVNQKILEKSDKLNKLK 747
            + ++S    +  YL  QNRPYSA DI    NK    GKT+++K+LD L +EG++KEK+YGKQK+Y  NQD    + ++E+  L +KI +L     +      + ++EL+ L +SM + + K + E++        ++LN +K
Sbjct:    7 VTVVSAPGVILNYLNHQNRPYSAQDIQGNLNKQHAFGKTAVVKALDQLAQEGQIKEKVYGKQKIYFANQDQFPIVADNELKDLDQKIVELNQGIKENQQVCKELDTELRGLTNSMVTEDLKGETERLRADCSALEERLNTIK 148

HSP 2 Score: 54.299 bits (129), Expect = 2.674e-27
Identity = 23/33 (69.70%), Postives = 28/33 (84.85%), Query Frame = 3 
Query:  792 RTKLVKEWRKRKRMANEMMDAVLENYPQTKKQF 890
            R + VKEWR+RKRMA +M+DAVLE YP+TKK F
Sbjct:  166 RVQYVKEWRRRKRMATDMIDAVLEGYPKTKKHF 198
[Close]
BLAST of Homologous-pairing protein 2 homolog vs. Ensembl Nematostella
Match: EDO49087 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RI40])

HSP 1 Score: 83.1889 bits (204), Expect = 2.509e-18
Identity = 42/101 (41.58%), Postives = 64/101 (63.37%), Query Frame = 1 
Query:  349 DKVYQYLISQNRPYSASDIFNYFNKDIGKTSILKSLDCLVEEGKVKEKLYGKQKVYLVNQDILSEINNDEMFILQKKITDLQNEFNDVVIEFNKAESELKM 651
            D V  YL+  NRPYSA DIF   +K+ GKT++ +SL+ L  E K++EK+YGKQKVY   QD  S+ +  E+  +  +I  LQ +  ++  +FN+ E+ + M
Sbjct:   11 DAVLSYLVKNNRPYSAVDIFTNLHKEYGKTAVQRSLESLASEDKIQEKVYGKQKVYAPKQDQFSDYDEGEIKKMDSQIASLQQKLKELQDKFNQQENGILM 111
[Close]
BLAST of Homologous-pairing protein 2 homolog vs. Ensembl Medaka
Match: psmc3ip (PSMC3 interacting protein [Source:NCBI gene;Acc:101167209])

HSP 1 Score: 83.9593 bits (206), Expect = 9.360e-27
Identity = 45/133 (33.83%), Postives = 80/133 (60.15%), Query Frame = 1 
Query:  355 VYQYLISQNRPYSASDIFNYFNK--DIGKTSILKSLDCLVEEGKVKEKLYGKQKVYLVNQDILSEINNDEMFILQKKITDLQNEFNDVVIEFNKAESELKMLASSMSSSEAKLKLEQVNQKILEKSDKLNKLK 747
            +  YL  +NRPYSA D+F    K   +GKT+++K+++ L  EGK+KEK YGKQK+Y  +Q    ++N+ ++  +  +I+ L  E   V     + ++ELK L SS+++ E   +++Q+  +     ++L K+K
Sbjct:   11 ILAYLNEKNRPYSAQDVFCNLQKQHGLGKTAVVKAMELLALEGKIKEKTYGKQKIYFADQSQFKDVNDADLKAMDHEISALCAEVQSVTQSCRELDAELKELNSSLTTEEMVAEIQQLKTECSGYRERLEKIK 143

HSP 2 Score: 56.9954 bits (136), Expect = 9.360e-27
Identity = 24/35 (68.57%), Postives = 31/35 (88.57%), Query Frame = 3 
Query:  789 ERTKLVKEWRKRKRMANEMMDAVLENYPQTKKQFL 893
            ER   VKEWRKRKR+A++MMDA+LE YP++KK+FL
Sbjct:  160 ERDVYVKEWRKRKRLASDMMDAILEGYPKSKKEFL 194
[Close]
BLAST of Homologous-pairing protein 2 homolog vs. Planmine SMEST
Match: SMESG000064317.1 (SMESG000064317.1)

HSP 1 Score: 273.092 bits (697), Expect = 2.092e-89
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 1 
Query:  337 MSDQDKVYQYLISQNRPYSASDIFNYFNKDIGKTSILKSLDCLVEEGKVKEKLYGKQKVYLVNQDILSEINNDEMFILQKKITDLQNEFNDVVIEFNKAESELKMLASSMSSSEAKLKLEQVNQKILEKSDKLNKLKENT 756
            MSDQDKVYQYLISQNRPYSASDIFNYFNKDIGKTSILKSLDCLVEEGKVKEKLYGKQKVYLVNQDILSEINNDEMFILQKKITDLQNEFNDVVIEFNKAESELKML SSMSSSEAKLKLEQVNQKILEKSDKLNKLKENT
Sbjct:    1 MSDQDKVYQYLISQNRPYSASDIFNYFNKDIGKTSILKSLDCLVEEGKVKEKLYGKQKVYLVNQDILSEINNDEMFILQKKITDLQNEFNDVVIEFNKAESELKMLTSSMSSSEAKLKLEQVNQKILEKSDKLNKLKENT 140

HSP 2 Score: 77.0258 bits (188), Expect = 2.092e-89
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 3 
Query:  786 IERTKLVKEWRKRKRMANEMMDAVLENYPQTKKQFL 893
            +ERTKLVKEWRKRKRMANEMMDAVLENYPQTKKQFL
Sbjct:  153 VERTKLVKEWRKRKRMANEMMDAVLENYPQTKKQFL 188
The following BLAST results are available for this feature:
BLAST of Homologous-pairing protein 2 homolog vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
PSMC3IP2.903e-2631.34PSMC3 interacting protein [Source:HGNC Symbol;Acc:... [more]
PSMC3IP1.430e-1440.51PSMC3 interacting protein [Source:HGNC Symbol;Acc:... [more]
PSMC3IP1.048e-1340.51PSMC3 interacting protein [Source:HGNC Symbol;Acc:... [more]
PSMC3IP1.190e-1368.57PSMC3 interacting protein [Source:HGNC Symbol;Acc:... [more]
PSMC3IP1.865e-1244.26PSMC3 interacting protein [Source:HGNC Symbol;Acc:... [more]
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BLAST of Homologous-pairing protein 2 homolog vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Homologous-pairing protein 2 homolog vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Homologous-pairing protein 2 homolog vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 3
Match NameE-valueIdentityDescription
psmc3ip5.900e-2630.66PSMC3 interacting protein [Source:ZFIN;Acc:ZDB-GEN... [more]
psmc3ip9.810e-1433.71PSMC3 interacting protein [Source:ZFIN;Acc:ZDB-GEN... [more]
psmc3ip1.980e-1333.71PSMC3 interacting protein [Source:ZFIN;Acc:ZDB-GEN... [more]
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BLAST of Homologous-pairing protein 2 homolog vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 4
Match NameE-valueIdentityDescription
psmc3ip1.180e-2538.18PSMC3 interacting protein [Source:NCBI gene;Acc:10... [more]
psmc3ip3.929e-2538.18PSMC3 interacting protein [Source:NCBI gene;Acc:10... [more]
psmc3ip4.673e-2538.18PSMC3 interacting protein [Source:NCBI gene;Acc:10... [more]
psmc3ip9.389e-1838.18PSMC3 interacting protein [Source:NCBI gene;Acc:10... [more]
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BLAST of Homologous-pairing protein 2 homolog vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 2
Match NameE-valueIdentityDescription
Psmc3ip4.183e-2732.35proteasome (prosome, macropain) 26S subunit, ATPas... [more]
Psmc3ip3.078e-1351.67proteasome (prosome, macropain) 26S subunit, ATPas... [more]
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BLAST of Homologous-pairing protein 2 homolog vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q91ZY6|HOP2_RAT3.604e-2733.09Homologous-pairing protein 2 homolog OS=Rattus nor... [more]
sp|O35047|HOP2_MOUSE2.540e-2632.35Homologous-pairing protein 2 homolog OS=Mus muscul... [more]
sp|Q9P2W1|HOP2_HUMAN1.277e-2531.34Homologous-pairing protein 2 homolog OS=Homo sapie... [more]
sp|Q63ZL2|HOP2_XENLA1.281e-2437.27Homologous-pairing protein 2 homolog OS=Xenopus la... [more]
sp|Q9HGK2|HOP2_SCHPO8.228e-1534.33Homologous-pairing protein 2 OS=Schizosaccharomyce... [more]
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BLAST of Homologous-pairing protein 2 homolog vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
K1P0R02.068e-2840.60Uncharacterized protein OS=Crassostrea gigas OX=29... [more]
A0A0L8HMZ82.238e-2844.78Uncharacterized protein OS=Octopus bimaculoides OX... [more]
R7VAA42.923e-2837.14Uncharacterized protein OS=Capitella teleta OX=283... [more]
C3ZHE33.523e-2838.93Uncharacterized protein OS=Branchiostoma floridae ... [more]
W5N3W02.127e-2733.83PSMC3 interacting protein OS=Lepisosteus oculatus ... [more]
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BLAST of Homologous-pairing protein 2 homolog vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
psmc3ip1.291e-2732.61PSMC3 interacting protein [Source:NCBI gene;Acc:10... [more]
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BLAST of Homologous-pairing protein 2 homolog vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
psmc3ip2.674e-2735.21PSMC3 interacting protein [Source:ZFIN;Acc:ZDB-GEN... [more]
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BLAST of Homologous-pairing protein 2 homolog vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Homologous-pairing protein 2 homolog vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO490872.509e-1841.58Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of Homologous-pairing protein 2 homolog vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1
Match NameE-valueIdentityDescription
psmc3ip9.360e-2733.83PSMC3 interacting protein [Source:NCBI gene;Acc:10... [more]
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BLAST of Homologous-pairing protein 2 homolog vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000064317.12.092e-8999.29SMESG000064317.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30008166 ID=SMED30008166|Name=Homologous-pairing protein 2 homolog|organism=Schmidtea mediterranea sexual|type=transcript|length=1980bp
AAAAATTGCTTATTTTTGGGGGCGTCCTTAATGGATGCTCCATAACTTTT
ACATTTGTATCGATTATTTTATCGCTTTTTAAACAAAACATTATCAAAAA
ATATTTTTTATATACTGTTATCAATGGCTATGGAAACCTGGCCCTCTTGC
TGCTTGCTACTCTATAAAGTGCTCGGTGTAACTTGGAGCTGCCACTATCA
AATAATTATTATTGCAATTGAAATTTCAAATCAAATTACTTAATTTCAAG
TTACAAAATTTTTAAATATTATTTTAAAATTTTCTTCATTTTTAAAGTTT
AATTATTATAAACTTAATTTTACATTACTATTGATTATGTCCGATCAAGA
TAAAGTATATCAATATCTGATAAGCCAAAATCGCCCTTATAGTGCCTCCG
ATATTTTCAACTATTTTAATAAAGATATAGGGAAAACTTCCATTTTAAAA
AGTTTAGATTGTTTAGTTGAAGAAGGAAAAGTTAAAGAAAAATTGTATGG
CAAACAAAAAGTTTATTTAGTAAATCAGGACATTTTATCTGAAATAAATA
ATGATGAAATGTTTATTTTGCAAAAGAAAATAACTGATTTGCAAAATGAA
TTTAATGACGTTGTCATCGAGTTTAACAAAGCAGAATCAGAACTCAAAAT
GCTTGCGAGTTCAATGTCTTCTAGCGAAGCCAAGCTAAAATTAGAACAAG
TCAATCAAAAAATATTAGAGAAGAGTGACAAATTGAATAAATTAAAAGAA
AATACCATTAAAATAAGCTCTGAAGAAATTAAAAAATAGAAAGAACCAAA
TTAGTAAAAGAATGGCGAAAAAGAAAACGAATGGCCAATGAAATGATGGA
TGCGGTTTTAGAAAATTATCCCCAGACAAAGAAACAATTTCTGGTTATTT
CATTATATTATTTATATATTATTTTAATTGAAATTATTTGCATTATAATT
TTTCAATTGCGGCCCACAAAACCATGATCCACAGTGTTATACTCTCATTT
CCCATGATGCTTTCAAGTCGGACTTTAATTTTATATGGTGATTTAATGCT
GTTCCTTACTGAGAGGAACGTTCATATTTGAGTTTCGATTTTCTCCTATA
CGTCTATGAACTTCATTTGATATTTCCAGGATCGTTTTTTATATTTTATA
AACTATCTTTCATAATAATAGCAATATATGCCATCTATGCCATCTATAGA
ACAATTTTTTGCTACTTCCACTTACTACTTATTAAATGACAGTAGACAAT
AAATATTTTTGCTTTTCAAAAAATGTTTAAAAAAAGTCTTGTGAGGTTTT
GAATTATTTCATTTTATTAATGACTTTTCTCAATTCTTATTTTAATGATT
ATTTTTGAATATAATTTTTTTTATTTAATTAACCTCTTTTTACTCATATC
ATCATTACAAAATGTTACCACTGTGATTCTTTTGAATTATTATTATTTCT
ATTAATGATTTCTTTCAATTATTTATTTATATTAATTATTTTTTTAATTA
GTTTATTATTATTATTTTTTTTTTTAATTACACTTAGCCCTCTATTTTCT
CGTTAGATTAAAACTATATTTTTGGTTTTTTGAATTCTAATTTTGTTTTA
AATTTTTTTTCTTAAAACTTTTTGTGACCGAGTTAAATTGAAAATTAGTG
TAGTATACATTGAATTTTTCCGCATTTCTTCAATCCTGTTTAACCGAAAC
CGTGCAAATCGAGGACTAAGGATATTTATAATAATTATTTTTCTTAAATG
AAATATTTATTTATATTAAATTCATTATCATTGAATTATTTAAAACCAAC
TATTAATAAATTAAATAAAAGTTTATTAATTAATTATTATCAATTATTAT
TTTCGTTAATTTATAAATAATATTTAAGAATTAATTTATATTTTTTTAAT
TCCATTCTTTTACTACTTAATATTGATAGTAGCTAATAGAAATTTCATTT
TTAAATATAATTAAATGAAGCTTAACGGGG
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protein sequence of SMED30008166-orf-1

>SMED30008166-orf-1 ID=SMED30008166-orf-1|Name=SMED30008166-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=151bp
MSDQDKVYQYLISQNRPYSASDIFNYFNKDIGKTSILKSLDCLVEEGKVK
EKLYGKQKVYLVNQDILSEINNDEMFILQKKITDLQNEFNDVVIEFNKAE
SELKMLASSMSSSEAKLKLEQVNQKILEKSDKLNKLKENTIKISSEEIKK
*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: biological process
TermDefinition
GO:0007131reciprocal meiotic recombination
GO:0006310DNA recombination
GO:0051321meiotic cell cycle
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR010776TBPIP
IPR011991WHTH_DNA-bd_dom
Vocabulary: cellular component
TermDefinition
GO:0005634nucleus