nicolin-1
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30008113 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 6
Homology
BLAST of nicolin-1 vs. Ensembl Human
Match: NICN1 (nicolin 1 [Source:HGNC Symbol;Acc:HGNC:18317]) HSP 1 Score: 72.7886 bits (177), Expect = 1.366e-14 Identity = 39/141 (27.66%), Postives = 68/141 (48.23%), Query Frame = 2 Query: 44 IKANIKSPVYLNLDITGSKTKSSRHSSGCCIFDVNFANNAFHSISTISFKNFFTAQITIKFR---STNKNSKWKIAIDSFILMKDPHSTMNSEDVIIFVTKDFKEPLNDVYVLRFILQQPSCLWKEFNIKNLCFYSNHNTS 457 + ++K V L + ++S+ G + DV F + A + I+FKN++TA ++I+ R S + +KW + + LM DPHS +++ + + + LR IL+QPS LW F ++ L Y S Sbjct: 6 VPCHVKGSVALQV----GDVRTSQGRPGVLVIDVTFPSVAPFELQEITFKNYYTAFLSIRVRQYTSAHTPAKWVTCLRDYCLMPDPHSEEGAQEYVSLFKHQMLCDMARISELRLILRQPSPLWLSFTVEELQIYQQGPKS 142
BLAST of nicolin-1 vs. Ensembl Human
Match: NICN1 (nicolin 1 [Source:HGNC Symbol;Acc:HGNC:18317]) HSP 1 Score: 72.7886 bits (177), Expect = 1.366e-14 Identity = 39/141 (27.66%), Postives = 68/141 (48.23%), Query Frame = 2 Query: 44 IKANIKSPVYLNLDITGSKTKSSRHSSGCCIFDVNFANNAFHSISTISFKNFFTAQITIKFR---STNKNSKWKIAIDSFILMKDPHSTMNSEDVIIFVTKDFKEPLNDVYVLRFILQQPSCLWKEFNIKNLCFYSNHNTS 457 + ++K V L + ++S+ G + DV F + A + I+FKN++TA ++I+ R S + +KW + + LM DPHS +++ + + + LR IL+QPS LW F ++ L Y S Sbjct: 6 VPCHVKGSVALQV----GDVRTSQGRPGVLVIDVTFPSVAPFELQEITFKNYYTAFLSIRVRQYTSAHTPAKWVTCLRDYCLMPDPHSEEGAQEYVSLFKHQMLCDMARISELRLILRQPSPLWLSFTVEELQIYQQGPKS 142
BLAST of nicolin-1 vs. Ensembl Human
Match: NICN1 (nicolin 1 [Source:HGNC Symbol;Acc:HGNC:18317]) HSP 1 Score: 72.7886 bits (177), Expect = 1.366e-14 Identity = 39/141 (27.66%), Postives = 68/141 (48.23%), Query Frame = 2 Query: 44 IKANIKSPVYLNLDITGSKTKSSRHSSGCCIFDVNFANNAFHSISTISFKNFFTAQITIKFR---STNKNSKWKIAIDSFILMKDPHSTMNSEDVIIFVTKDFKEPLNDVYVLRFILQQPSCLWKEFNIKNLCFYSNHNTS 457 + ++K V L + ++S+ G + DV F + A + I+FKN++TA ++I+ R S + +KW + + LM DPHS +++ + + + LR IL+QPS LW F ++ L Y S Sbjct: 6 VPCHVKGSVALQV----GDVRTSQGRPGVLVIDVTFPSVAPFELQEITFKNYYTAFLSIRVRQYTSAHTPAKWVTCLRDYCLMPDPHSEEGAQEYVSLFKHQMLCDMARISELRLILRQPSPLWLSFTVEELQIYQQGPKS 142
BLAST of nicolin-1 vs. Ensembl Human
Match: AC104452.1 (novel protein) HSP 1 Score: 72.7886 bits (177), Expect = 1.366e-14 Identity = 39/141 (27.66%), Postives = 68/141 (48.23%), Query Frame = 2 Query: 44 IKANIKSPVYLNLDITGSKTKSSRHSSGCCIFDVNFANNAFHSISTISFKNFFTAQITIKFR---STNKNSKWKIAIDSFILMKDPHSTMNSEDVIIFVTKDFKEPLNDVYVLRFILQQPSCLWKEFNIKNLCFYSNHNTS 457 + ++K V L + ++S+ G + DV F + A + I+FKN++TA ++I+ R S + +KW + + LM DPHS +++ + + + LR IL+QPS LW F ++ L Y S Sbjct: 6 VPCHVKGSVALQV----GDVRTSQGRPGVLVIDVTFPSVAPFELQEITFKNYYTAFLSIRVRQYTSAHTPAKWVTCLRDYCLMPDPHSEEGAQEYVSLFKHQMLCDMARISELRLILRQPSPLWLSFTVEELQIYQQGPKS 142
BLAST of nicolin-1 vs. Ensembl Human
Match: AC104452.1 (novel protein) HSP 1 Score: 72.7886 bits (177), Expect = 1.366e-14 Identity = 39/141 (27.66%), Postives = 68/141 (48.23%), Query Frame = 2 Query: 44 IKANIKSPVYLNLDITGSKTKSSRHSSGCCIFDVNFANNAFHSISTISFKNFFTAQITIKFR---STNKNSKWKIAIDSFILMKDPHSTMNSEDVIIFVTKDFKEPLNDVYVLRFILQQPSCLWKEFNIKNLCFYSNHNTS 457 + ++K V L + ++S+ G + DV F + A + I+FKN++TA ++I+ R S + +KW + + LM DPHS +++ + + + LR IL+QPS LW F ++ L Y S Sbjct: 6 VPCHVKGSVALQV----GDVRTSQGRPGVLVIDVTFPSVAPFELQEITFKNYYTAFLSIRVRQYTSAHTPAKWVTCLRDYCLMPDPHSEEGAQEYVSLFKHQMLCDMARISELRLILRQPSPLWLSFTVEELQIYQQGPKS 142
BLAST of nicolin-1 vs. Ensembl Zebrafish
Match: nicn1 (nicolin 1 [Source:ZFIN;Acc:ZDB-GENE-040801-129]) HSP 1 Score: 71.633 bits (174), Expect = 2.633e-14 Identity = 44/134 (32.84%), Postives = 68/134 (50.75%), Query Frame = 2 Query: 44 IKANIKSPVYLNLDITGSKTKSSRHSSGCCIFDVNFANNAFHSISTISFKNFFTAQITIKF--RSTNKNSKWKIAIDSFILMKDPHSTMNSEDVIIFVTKDFKEPLNDVYVLRFILQQPSCLWKEFNIKNLCFY 439 + +KSPV L I + + SSR G I D+ A +I ISFKNF+TA +T++ R + SKW + ++ LM +PH+ S D + ++V +R IL+QPS W F+I+ + Y Sbjct: 6 VSCTVKSPV--ALQIGDAVSDSSR--PGVYITDITLAEPV--NIQEISFKNFYTAYLTVRLQRRHGSTASKWVTCLKNYCLMGNPHAEAGSHDYFSIYRQQMSTEPDNVTTVRLILRQPSSEWLSFSIEEINIY 133
BLAST of nicolin-1 vs. Ensembl Zebrafish
Match: nicn1 (nicolin 1 [Source:ZFIN;Acc:ZDB-GENE-040801-129]) HSP 1 Score: 71.633 bits (174), Expect = 2.633e-14 Identity = 44/134 (32.84%), Postives = 68/134 (50.75%), Query Frame = 2 Query: 44 IKANIKSPVYLNLDITGSKTKSSRHSSGCCIFDVNFANNAFHSISTISFKNFFTAQITIKF--RSTNKNSKWKIAIDSFILMKDPHSTMNSEDVIIFVTKDFKEPLNDVYVLRFILQQPSCLWKEFNIKNLCFY 439 + +KSPV L I + + SSR G I D+ A +I ISFKNF+TA +T++ R + SKW + ++ LM +PH+ S D + ++V +R IL+QPS W F+I+ + Y Sbjct: 6 VSCTVKSPV--ALQIGDAVSDSSR--PGVYITDITLAEPV--NIQEISFKNFYTAYLTVRLQRRHGSTASKWVTCLKNYCLMGNPHAEAGSHDYFSIYRQQMSTEPDNVTTVRLILRQPSSEWLSFSIEEINIY 133
BLAST of nicolin-1 vs. Ensembl Xenopus
Match: mst1r (macrophage stimulating 1 receptor [Source:NCBI gene;Acc:493453]) HSP 1 Score: 63.929 bits (154), Expect = 1.928e-11 Identity = 39/135 (28.89%), Postives = 64/135 (47.41%), Query Frame = 2 Query: 44 IKANIKSPVYLNLDITGSKTKSSRHSSGCCIFDVNFANNAFHSISTISFKNFFTAQITIKFRSTNKN------SKWKIAIDSFILMKDPHSTMNSEDVIIFVTKDFKEPLNDVYVLRFILQQPSCLWKEFNIKNL 430 + ++ PV L + KT+ SR G + DV F + I+FKN++TA +T+K + + + W I + LM +PH+ S+D + + V LR IL+QPS +W FN++ L Sbjct: 6 VPYTVRPPV--PLQVGDVKTEISR--PGVYVIDVTFPKYQPVDVEEITFKNYYTAFLTVKIQQKRPSETVACPAVWHTCIRNMRLMPNPHTEEGSQDYVSLQRHQMLCDTDHVISLRLILRQPSPVWLNFNLEEL 136
BLAST of nicolin-1 vs. Ensembl Mouse
Match: Nicn1 (nicolin 1 [Source:MGI Symbol;Acc:MGI:1913507]) HSP 1 Score: 78.9518 bits (193), Expect = 5.694e-17 Identity = 44/141 (31.21%), Postives = 69/141 (48.94%), Query Frame = 2 Query: 44 IKANIKSPVYLNLDITGSKTKSSRHSSGCCIFDVNFANNAFHSISTISFKNFFTAQITIKFR---STNKNSKWKIAIDSFILMKDPHSTMNSEDVIIFVTKDFKEPLNDVYVLRFILQQPSCLWKEFNIKNLCFYSNHNTS 457 + ++KS V L + ++S+ G + DV F N A + I FKN++TA ++I+ R S + +KW + + LM DPHS ++D + +N V LR IL+QPS LW F ++ L Y S Sbjct: 6 VPCHVKSTVALQV----GDMRTSQGRPGVLVVDVTFPNIAPFELQEIMFKNYYTAFLSIRVRQQSSMHTAAKWVTCLRDYCLMPDPHSEEGAQDYVSLFKHQMLCDMNRVLELRLILRQPSPLWLSFTVEELQIYQQGPKS 142
BLAST of nicolin-1 vs. UniProt/SwissProt
Match: sp|Q9CQM0|NICN1_MOUSE (Nicolin-1 OS=Mus musculus OX=10090 GN=Nicn1 PE=1 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 3.983e-16 Identity = 44/141 (31.21%), Postives = 69/141 (48.94%), Query Frame = 2 Query: 44 IKANIKSPVYLNLDITGSKTKSSRHSSGCCIFDVNFANNAFHSISTISFKNFFTAQITIKFR---STNKNSKWKIAIDSFILMKDPHSTMNSEDVIIFVTKDFKEPLNDVYVLRFILQQPSCLWKEFNIKNLCFYSNHNTS 457 + ++KS V L + ++S+ G + DV F N A + I FKN++TA ++I+ R S + +KW + + LM DPHS ++D + +N V LR IL+QPS LW F ++ L Y S Sbjct: 6 VPCHVKSTVALQV----GDMRTSQGRPGVLVVDVTFPNIAPFELQEIMFKNYYTAFLSIRVRQQSSMHTAAKWVTCLRDYCLMPDPHSEEGAQDYVSLFKHQMLCDMNRVLELRLILRQPSPLWLSFTVEELQIYQQGPKS 142
BLAST of nicolin-1 vs. UniProt/SwissProt
Match: sp|Q861Y6|NICN1_CANLF (Nicolin-1 OS=Canis lupus familiaris OX=9615 GN=NICN1 PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 1.226e-14 Identity = 41/141 (29.08%), Postives = 68/141 (48.23%), Query Frame = 2 Query: 44 IKANIKSPVYLNLDITGSKTKSSRHSSGCCIFDVNFANNAFHSISTISFKNFFTAQITIKFR---STNKNSKWKIAIDSFILMKDPHSTMNSEDVIIFVTKDFKEPLNDVYVLRFILQQPSCLWKEFNIKNLCFYSNHNTS 457 + ++K V L + ++S+ G + DV F + A + I FKN++TA ++I+ R ST+ +KW + + LM DPHS +++ + + V LR IL+QPS LW F ++ L Y S Sbjct: 6 VPCHVKGTVALQV----GDVRTSQGRPGVLVIDVTFPSVAPFELQEIMFKNYYTAFLSIRVRQHTSTHTPAKWVTCLRDYCLMPDPHSEEGAQEYVSLFKHQMLCDMARVLELRLILRQPSPLWLSFTVEELQIYQQGPKS 142
BLAST of nicolin-1 vs. UniProt/SwissProt
Match: sp|Q9BSH3|NICN1_HUMAN (Nicolin-1 OS=Homo sapiens OX=9606 GN=NICN1 PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 6.559e-14 Identity = 39/141 (27.66%), Postives = 68/141 (48.23%), Query Frame = 2 Query: 44 IKANIKSPVYLNLDITGSKTKSSRHSSGCCIFDVNFANNAFHSISTISFKNFFTAQITIKFR---STNKNSKWKIAIDSFILMKDPHSTMNSEDVIIFVTKDFKEPLNDVYVLRFILQQPSCLWKEFNIKNLCFYSNHNTS 457 + ++K V L + ++S+ G + DV F + A + I+FKN++TA ++I+ R S + +KW + + LM DPHS +++ + + + LR IL+QPS LW F ++ L Y S Sbjct: 6 VPCHVKGSVALQV----GDVRTSQGRPGVLVIDVTFPSVAPFELQEITFKNYYTAFLSIRVRQYTSAHTPAKWVTCLRDYCLMPDPHSEEGAQEYVSLFKHQMLCDMARISELRLILRQPSPLWLSFTVEELQIYQQGPKS 142
BLAST of nicolin-1 vs. TrEMBL
Match: R7U8V7 (Uncharacterized protein OS=Capitella teleta OX=283909 GN=CAPTEDRAFT_173344 PE=4 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.541e-16 Identity = 40/123 (32.52%), Postives = 70/123 (56.91%), Query Frame = 2 Query: 122 SGCCIFDVNFANNAFHSISTISFKNFFTAQITIKFR------STNKNSKWKIAIDSFILMKDPHSTMNSEDVI-IFVTKDFKEPLNDVYVLRFILQQPSCLWKEFNIKNLCFYSNHNTSTLNL 469 +GC + DV F N + + I FKN++TA IT+ + + K WK+ + +F LM PH+ E+ I ++ PL ++ LRF+LQQPS +WKEF I+++ + N + +++++ Sbjct: 26 AGCSVIDVTFQNPVYVELQEIHFKNYYTASITVLVKRKAGITAAEKEKAWKVCVRNFTLMPHPHADQGGEEYFSIGPSQLGGAPLQNITALRFVLQQPSSVWKEFYIEDIKLFKNLSLTSVDV 148
BLAST of nicolin-1 vs. TrEMBL
Match: A0A1S3JQ80 (nicolin-1 OS=Lingula unguis OX=7574 GN=LOC106175195 PE=4 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 2.291e-16 Identity = 48/132 (36.36%), Postives = 67/132 (50.76%), Query Frame = 2 Query: 50 ANIKSPVYLNLDITGSKTKSSRHSSGCCIFDVNFANNAFHSISTISFKNFFTAQITIKFRSTNK---NSKWKIAIDSFILMKDPHSTMNSEDVIIFVTKDFKEPLNDVYVLRFILQQPSCLWKEFNIKNLCF 436 +K+PVY+ + G K SGCCIFDV F N I+ SFKN++ +T+ R + KWK + LM +PH ++D K L +V LRFIL+QPS +WKEF ++ L F Sbjct: 8 GTVKTPVYIKV---GDPKKE--FFSGCCIFDVAFPNTVSVEINEFSFKNYYGHTLTVMARRKEEPGIEPKWKTCLKRMKLMPNPHFETGAQDYFTVTRKQLLFDLTNVTGLRFILRQPSPVWKEFKLEELTF 134
BLAST of nicolin-1 vs. TrEMBL
Match: A0A4Y2I5A0 (Uncharacterized protein OS=Araneus ventricosus OX=182803 GN=AVEN_82710_1 PE=4 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 4.790e-15 Identity = 52/163 (31.90%), Postives = 86/163 (52.76%), Query Frame = 2 Query: 59 KSPVYLNLDITGSKTKSSRHSSGCCIFDVNFANNAFHSISTISFKNFFTAQITI--KFRSTNKNSK------WKIAIDSFILMKDPHSTMNSEDVIIFVTKDFKEPLNDVYVLRFILQQPSCLWKEFNIKNLCFYSNHNTSTLNLKSILKKINSFSDIKSECN 523 K+PV + LD + + + GCCI +V+F +I I F+N +TA I + K + K+ K W+ ++ FILM+DP NS+D++ K+ P + +RF+L+QPS WK+F I+ L FY T + S+ + +++ S + SEC Sbjct: 15 KAPVSIFLD-----DERADYKPGCCILEVSFPEPV--TIGDIRFRNNYTAFIGLSCKKVAAEKDVKNRDILPWQASVKRFILMQDPDCEKNSQDIVSIPAKESCIPWVGIVNVRFVLKQPSFRWKKFGIEELTFYGEITTKDVKQMSVTRPLSAASRM-SECK 169
BLAST of nicolin-1 vs. TrEMBL
Match: A0A5C6N3K6 (Nicolin-1 NPCEDRG OS=Takifugu flavidus OX=433684 GN=D4764_04G0000340 PE=4 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 1.968e-14 Identity = 42/138 (30.43%), Postives = 71/138 (51.45%), Query Frame = 2 Query: 44 IKANIKSPVYLNLDITGSKTKSSRHSSGCCIFDVNFANNAFHSISTISFKNFFTAQITIKF--RSTNKNS--KWKIAIDSFILMKDPHSTMNSEDVIIFVTKDFKEPLNDVYVLRFILQQPSCLWKEFNIKNLCFYSN 445 + IK V+LN+ G ++R SG C+ DV+ +I I+F NF+TA +T++ R + + +W A+ LM DPH+ S+D + P + V +R IL+QPSC+W F ++++ Y + Sbjct: 6 VSCTIKPAVFLNI---GGAEAAAR--SGVCVLDVSLPVGKTVNIEKITFTNFYTASVTLRLLRRGPGQEAAARWCTALKELRLMHDPHTEGGSQDSCCIHRTQMQVPPDHVSSVRLILRQPSCVWLNFTLEDIKIYPH 138
BLAST of nicolin-1 vs. TrEMBL
Match: A0A2I4AHE6 (nicolin-1 isoform X2 OS=Austrofundulus limnaeus OX=52670 GN=nicn1 PE=4 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 2.431e-14 Identity = 54/194 (27.84%), Postives = 90/194 (46.39%), Query Frame = 2 Query: 44 IKANIKSPVYLNLDITGSKTKSSRHSSGCCIFDVNFANNAFHSISTISFKNFFTAQITIKF--RSTNKN--SKWKIAIDSFILMKDPHSTMNSEDVIIFVTKDFKEPLNDVYVLRFILQQPSCLWKEFNIKNLCFYSNHNTSTLNLKSILKKINSF-SDIKSECNDFHRSALTDSQESLNELPGNLVDSSIISQ 610 + IK PVYL + S+ SG C+ D+N ++ SI ++FKN +TA +T++ RS + ++W A+ LM +PH+ S+D +E + V +R IL+QPS W F+++++ + + LK K+++ + SD+ L D L LP SS I Q Sbjct: 9 VAPTIKGPVYLQM-------GESKAQSGVCVLDLNLSSGRPVSIEELTFKNHYTAYLTVRLLRRSPEQGGLARWCTAVRDLPLMDNPHTEGGSQDYYSLHRTQMQEKPDHVVTVRLILRQPSSAWLTFSLEDIRVFPHMEP----LKEPEKEVSDWLSDL----------ILVDQHPDLEGLPDPQTVSSSIQQ 181
BLAST of nicolin-1 vs. Ensembl Cavefish
Match: nicn1 (nicolin 1 [Source:NCBI gene;Acc:103041364]) HSP 1 Score: 63.5438 bits (153), Expect = 1.505e-11 Identity = 41/141 (29.08%), Postives = 66/141 (46.81%), Query Frame = 2 Query: 44 IKANIKSPVYLNLDITGSKTKSSRHSSGCCIFDVNFANNAFHSISTISFKNFFTAQITIKF-----RSTNKNSKWKIAIDSFILMKDPHSTMNSEDVIIFVTKDFKEPLNDVYVLRFILQQPSCLWKEFNIKNLCFYSNHN 451 + +KSPV L + G S H G I D+ +I ISFKN++TA +T++ S +KW + + LM +PH+ S+D + ++V +R IL+QPS +W FN++ + Y N Sbjct: 6 VNCTVKSPVALQI---GDVVSDSFHP-GVYITDIVLGEPV--NIQEISFKNYYTAYLTVRVLKKEVGSEEAPAKWVTCLRNHCLMANPHTEEGSQDYFSLYRQQMLMQPDNVTTVRLILRQPSSVWLNFNLEEIKIYPVMN 140
BLAST of nicolin-1 vs. Ensembl Cavefish
Match: nicn1 (nicolin 1 [Source:NCBI gene;Acc:103041364]) HSP 1 Score: 63.5438 bits (153), Expect = 1.505e-11 Identity = 41/141 (29.08%), Postives = 66/141 (46.81%), Query Frame = 2 Query: 44 IKANIKSPVYLNLDITGSKTKSSRHSSGCCIFDVNFANNAFHSISTISFKNFFTAQITIKF-----RSTNKNSKWKIAIDSFILMKDPHSTMNSEDVIIFVTKDFKEPLNDVYVLRFILQQPSCLWKEFNIKNLCFYSNHN 451 + +KSPV L + G S H G I D+ +I ISFKN++TA +T++ S +KW + + LM +PH+ S+D + ++V +R IL+QPS +W FN++ + Y N Sbjct: 6 VNCTVKSPVALQI---GDVVSDSFHP-GVYITDIVLGEPV--NIQEISFKNYYTAYLTVRVLKKEVGSEEAPAKWVTCLRNHCLMANPHTEEGSQDYFSLYRQQMLMQPDNVTTVRLILRQPSSVWLNFNLEEIKIYPVMN 140
BLAST of nicolin-1 vs. Ensembl Nematostella
Match: EDO48118 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RK72]) HSP 1 Score: 68.9366 bits (167), Expect = 6.664e-14 Identity = 45/132 (34.09%), Postives = 62/132 (46.97%), Query Frame = 2 Query: 50 ANIKSPVYLNLDITGSKTKSSRHSSGCCIFDVNFANNAFHSISTISFKNFF--TAQITIKFRSTNKNSKWKIAIDSFILMKDPHSTMNSEDVIIFVTKDFKEPLNDVYVLRFILQQPSCLWKEFNIKNL-CF 436 A IK PV L + SS SGC + D+ F +I ISFKN + + +I +K + N WK I LM +PH S+ F +D P + V ++R IL+Q S W F I +L CF Sbjct: 11 AIIKKPVVLRV-----GEASSDFRSGCAVVDILFPGTDTVNIDRISFKNNYCSSVEIRMKVHGPDSNEVWKQCIKKTKLMPEPHYEAGSQSYFEFTAQDMCVPTDKVIMIRIILRQSSPHWANFGIDDLKCF 137
BLAST of nicolin-1 vs. Ensembl Medaka
Match: nicn1 (nicolin 1 [Source:NCBI gene;Acc:101161050]) HSP 1 Score: 77.7962 bits (190), Expect = 1.313e-16 Identity = 43/144 (29.86%), Postives = 76/144 (52.78%), Query Frame = 2 Query: 44 IKANIKSPVYLNLDITGSKTKSSRHSSGCCIFDVNFANNAFHSISTISFKNFFTAQITIKF---RSTNKNS-KWKIAIDSFILMKDPHSTMNSEDVIIFVTKDFKEPLNDVYVLRFILQQPSCLWKEFNIKNLCFYSNHNTSTL 463 + +K PV+L I +K S+R SG C+ DV + +I I+FKN++TA +TI+ ++ N+ S KW A+ LM +PH+ S++ + + + V LR IL+QPS W+ FN++ + + + + + Sbjct: 11 VDCTVKPPVFLQ--IGDAKGDSAR--SGVCVVDVTLPHGKPINIEKITFKNYYTAYVTIRLLRRKAENEGSAKWCTALSDLALMDNPHTEGGSQNYFSIHRRQMQVEPDHVESLRLILRQPSSAWRLFNLEEIRLFPHKEPAPV 150
BLAST of nicolin-1 vs. Planmine SMEST
Match: SMESG000054751.1 (SMESG000054751.1) HSP 1 Score: 481.1 bits (1237), Expect = 8.231e-174 Identity = 238/240 (99.17%), Postives = 238/240 (99.17%), Query Frame = 2 Query: 35 MSEIKANIKSPVYLNLDITGSKTKSSRHSSGCCIFDVNFANNAFHSISTISFKNFFTAQITIKFRSTNKNSKWKIAIDSFILMKDPHSTMNSEDVIIFVTKDFKEPLNDVYVLRFILQQPSCLWKEFNIKNLCFYSNHNTSTLNLKSILKKINSFSDIKSECNDFHRSALTDSQESLNELPGNLVDSSIISQESINDLLIKMKEMSCLPLFQHEFIPVETFTGCVEKDGFCDSTTLIHPL 754 MSEIKANIKSPVYLNLDITGSKTKSSRHSSGCCIFDVNFANNAFHSISTISFKNFFTAQITIKFRSTNKNSKWKIAIDSFILMKDPHSTMNSEDV IFVTKDFKEPLNDVYVLRFILQQPSCLWKEFNIKNLCFYSNHNTSTLNLKSILKKINSFSDIKSECNDF RSALTDSQESLNELPGNLVDSSIISQESINDLLIKMKEMSCLPLFQHEFIPVETFTGCVEKDGFCDSTTLIHPL Sbjct: 1 MSEIKANIKSPVYLNLDITGSKTKSSRHSSGCCIFDVNFANNAFHSISTISFKNFFTAQITIKFRSTNKNSKWKIAIDSFILMKDPHSTMNSEDVFIFVTKDFKEPLNDVYVLRFILQQPSCLWKEFNIKNLCFYSNHNTSTLNLKSILKKINSFSDIKSECNDFQRSALTDSQESLNELPGNLVDSSIISQESINDLLIKMKEMSCLPLFQHEFIPVETFTGCVEKDGFCDSTTLIHPL 240
BLAST of nicolin-1 vs. Planmine SMEST
Match: SMESG000079687.1 (SMESG000079687.1) HSP 1 Score: 488.804 bits (1257), Expect = 8.120e-163 Identity = 237/240 (98.75%), Postives = 238/240 (99.17%), Query Frame = 2 Query: 35 MSEIKANIKSPVYLNLDITGSKTKSSRHSSGCCIFDVNFANNAFHSISTISFKNFFTAQITIKFRSTNKNSKWKIAIDSFILMKDPHSTMNSEDVIIFVTKDFKEPLNDVYVLRFILQQPSCLWKEFNIKNLCFYSNHNTSTLNLKSILKKINSFSDIKSECNDFHRSALTDSQESLNELPGNLVDSSIISQESINDLLIKMKEMSCLPLFQHEFIPVETFTGCVEKDGFCDSTTLIHPL 754 MSEIKANIKSPVYLNLDITGSKTKSSRHSSGCCIFDVNFANNAFHSISTISFKNFFTAQITIKFRSTNKNSKWKIAIDSFILMKDPHSTMNSEDV IF+TKDFKEPLNDVYVLRFILQQPSCLWKEFNIKNLCFYSNHNTSTLNLKSILKKINSFSDIKSECNDF RSALTDSQESLNELPGNLVDSSIISQESINDLLIKMKEMSCLPLFQHEFIPVETFTGCVEKDGFCDSTTLIHPL Sbjct: 1 MSEIKANIKSPVYLNLDITGSKTKSSRHSSGCCIFDVNFANNAFHSISTISFKNFFTAQITIKFRSTNKNSKWKIAIDSFILMKDPHSTMNSEDVFIFITKDFKEPLNDVYVLRFILQQPSCLWKEFNIKNLCFYSNHNTSTLNLKSILKKINSFSDIKSECNDFQRSALTDSQESLNELPGNLVDSSIISQESINDLLIKMKEMSCLPLFQHEFIPVETFTGCVEKDGFCDSTTLIHPL 240 The following BLAST results are available for this feature:
BLAST of nicolin-1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of nicolin-1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of nicolin-1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of nicolin-1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 2
BLAST of nicolin-1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 1
BLAST of nicolin-1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 1
BLAST of nicolin-1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 3
BLAST of nicolin-1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of nicolin-1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 2
BLAST of nicolin-1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of nicolin-1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of nicolin-1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of nicolin-1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 1
BLAST of nicolin-1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 2
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30008113 ID=SMED30008113|Name=nicolin-1|organism=Schmidtea mediterranea sexual|type=transcript|length=932bpback to top protein sequence of SMED30008113-orf-1 >SMED30008113-orf-1 ID=SMED30008113-orf-1|Name=SMED30008113-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=241bp MSEIKANIKSPVYLNLDITGSKTKSSRHSSGCCIFDVNFANNAFHSISTIback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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