ESF1, nucleolar pre-rRNA processing protein, homolog

Overview
NameESF1, nucleolar pre-rRNA processing protein, homolog
Smed IDSMED30008086
Length (bp)1862
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of ESF1, nucleolar pre-rRNA processing protein, homolog (SMED30008086) t-SNE clustered cells

Violin plots show distribution of expression levels for ESF1, nucleolar pre-rRNA processing protein, homolog (SMED30008086) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of ESF1, nucleolar pre-rRNA processing protein, homolog (SMED30008086) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for ESF1, nucleolar pre-rRNA processing protein, homolog (SMED30008086) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30008086

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 6

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30008086SMESG000043665.1 SmedASXL_001499SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
neoblastSMED30008086SMESG000043665.1 dd_Smed_v4_12089_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30008086SMESG000043665.1 SMED_02487_V2_1GPL14150_gene_modelsPMID:22385657
Wagner et al., 2012		whole organism asexual adult cDNA to DNA expression microarray evidence
neoblastSMED30008086SMESG000043665.1 SMED_02487_V2_1GPL14150PMID:22385657
Wagner et al., 2012		whole organism asexual adult cDNA to DNA expression microarray evidence
neoblastSMED30008086SMESG000043665.1 SmWIOct06_021506GPL14150_gene_modelsPMID:22385657
Wagner et al., 2012		whole organism asexual adult cDNA to DNA expression microarray evidence
neoblastSMED30008086SMESG000043665.1 SmWIOct06_043048GPL14150_gene_modelsPMID:22385657
Wagner et al., 2012		whole organism asexual adult cDNA to DNA expression microarray evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of ESF1, nucleolar pre-rRNA processing protein, homolog vs. Ensembl Human
Match: ESF1 (ESF1 nucleolar pre-rRNA processing protein homolog [Source:HGNC Symbol;Acc:HGNC:15898])

HSP 1 Score: 90.1225 bits (222), Expect = 1.999e-18
Identity = 61/186 (32.80%), Postives = 94/186 (50.54%), Query Frame = 2 
Query:  221 LVRDAKRTNESTNKLAVFNFDFENYPLSHLANIIKSFLPKTGKIISISKIPTEEYMERYQDDCSKGPKEYLN-----AEPGVKAYKIYRKYQISRLKFFYGIFQFDSIETADYIYNELDGMNLGDSGLKLDLRYVSANRNFEIPNEFKHLIETLDPNLKRFKSVDFAASCFATTKVTDDWD-VDHK 760
            L +DA R +E T +LAV N D++      L  +  SF PK G I S+   P+E   ER +++  +GP E L+      E    + +  R YQ  RLK++Y +   DS ETA  IY + DG+    S   +DLR++  +  F+  +E K +   +  NL  +K   F ++   T+ V   WD  DH+
Sbjct:  127 LDKDAPRADEITRRLAVCNMDWDRLKAKDLLALFNSFKPKGGVIFSVKIYPSEFGKERMKEEQVQGPVELLSIPEDAPEKDWTSREKLRDYQFKRLKYYYAVVDCDSPETASKIYEDCDGLEFESSCSFIDLRFIPDDITFD--DEPKDVASEV--NLTAYKPKYFTSAAMGTSTVEITWDETDHE 308
[Close]
BLAST of ESF1, nucleolar pre-rRNA processing protein, homolog vs. Ensembl Human
Match: ESF1 (ESF1 nucleolar pre-rRNA processing protein homolog [Source:HGNC Symbol;Acc:HGNC:15898])

HSP 1 Score: 88.5817 bits (218), Expect = 1.323e-17
Identity = 61/185 (32.97%), Postives = 93/185 (50.27%), Query Frame = 2 
Query:  221 LVRDAKRTNESTNKLAVFNFDFENYPLSHLANIIKSFLPKTGKIISISKIPTEEYMERYQDDCSKGPKEYLN-----AEPGVKAYKIYRKYQISRLKFFYGIFQFDSIETADYIYNELDGMNLGDSGLKLDLRYVSANRNFEIPNEFKHLIETLDPNLKRFKSVDFAASCFATTKVTDDWD-VDH 757
            L +DA R +E T +LAV N D++      L  +  SF PK G I S+   P+E   ER +++  +GP E L+      E    + +  R YQ  RLK++Y +   DS ETA  IY + DG+    S   +DLR++  +  F+  +E K +   +  NL  +K   F ++   T+ V   WD  DH
Sbjct:  336 LDKDAPRADEITRRLAVCNMDWDRLKAKDLLALFNSFKPKGGVIFSVKIYPSEFGKERMKEEQVQGPVELLSIPEDAPEKDWTSREKLRDYQFKRLKYYYAVVDCDSPETASKIYEDCDGLEFESSCSFIDLRFIPDDITFD--DEPKDVASEV--NLTAYKPKYFTSAAMGTSTVEITWDETDH 516
[Close]
BLAST of ESF1, nucleolar pre-rRNA processing protein, homolog vs. Ensembl Celegans
Match: F58B3.4 (pep chromosome:WBcel235:IV:11628757:11631841:-1 gene:WBGene00010231.1 transcript:F58B3.4.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:F58B3.4)

HSP 1 Score: 81.2629 bits (199), Expect = 7.316e-16
Identity = 51/187 (27.27%), Postives = 96/187 (51.34%), Query Frame = 2 
Query:  218 NLVRDAKRTNESTNKLAVFNFDFENYPLSHLANIIKSFLPKTGKIISISKIPTEEYMERYQDDCSKGP--------KEYLNAEPGVKAYKIYRKYQISRLKFFYGIFQFDSIETADYIYNELDGMNLGDSGLKLDLRYVSANRNFEIPNEFKHLIETLDPNLKRFKSVDFAASCFATTKVTDDWDVD 754
            NL R+  +   ++N+LAV N +++      +  ++KSF+P+ G +IS+    ++    +   +   GP        +EY   E   +     R+Y +++LK++Y +  FDSI +A  +Y E DG    ++GLK+D+R++  + +FE  +  K  +   D NL ++K+   + S   +T     WD D
Sbjct:  193 NLDREVDQVEWTSNRLAVCNLEWDTMNCEDILMLVKSFVPQGGSVISVGIYLSDFGKGQLSKEEKTGPLLKLAKPVEEYKEDEMDDETRTAVREYLVNKLKYYYSVITFDSIPSAVAVYEECDGFQFEETGLKMDMRFIPDDMDFE-EDRVKEFLNAEDVNLTKYKAKKKSKSAIISTGAKILWDED 378
[Close]
BLAST of ESF1, nucleolar pre-rRNA processing protein, homolog vs. Ensembl Celegans
Match: F58B3.4 (pep chromosome:WBcel235:IV:11628757:11631850:-1 gene:WBGene00010231.1 transcript:F58B3.4.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:F58B3.4)

HSP 1 Score: 81.2629 bits (199), Expect = 7.316e-16
Identity = 51/187 (27.27%), Postives = 96/187 (51.34%), Query Frame = 2 
Query:  218 NLVRDAKRTNESTNKLAVFNFDFENYPLSHLANIIKSFLPKTGKIISISKIPTEEYMERYQDDCSKGP--------KEYLNAEPGVKAYKIYRKYQISRLKFFYGIFQFDSIETADYIYNELDGMNLGDSGLKLDLRYVSANRNFEIPNEFKHLIETLDPNLKRFKSVDFAASCFATTKVTDDWDVD 754
            NL R+  +   ++N+LAV N +++      +  ++KSF+P+ G +IS+    ++    +   +   GP        +EY   E   +     R+Y +++LK++Y +  FDSI +A  +Y E DG    ++GLK+D+R++  + +FE  +  K  +   D NL ++K+   + S   +T     WD D
Sbjct:  193 NLDREVDQVEWTSNRLAVCNLEWDTMNCEDILMLVKSFVPQGGSVISVGIYLSDFGKGQLSKEEKTGPLLKLAKPVEEYKEDEMDDETRTAVREYLVNKLKYYYSVITFDSIPSAVAVYEECDGFQFEETGLKMDMRFIPDDMDFE-EDRVKEFLNAEDVNLTKYKAKKKSKSAIISTGAKILWDED 378
[Close]
BLAST of ESF1, nucleolar pre-rRNA processing protein, homolog vs. Ensembl Fly
Match: CG11417 (gene:FBgn0024364 transcript:FBtr0070212)

HSP 1 Score: 94.7449 bits (234), Expect = 7.129e-20
Identity = 60/196 (30.61%), Postives = 95/196 (48.47%), Query Frame = 2 
Query:  221 LVRDAKRTNESTNKLAVFNFDFENYPLSHLANIIKSFLPKTGKIISISKIPTEEYMERYQDDCSKGPKEYL-------------------NAEPGVKAY-KIYRKYQISRLKFFYGIFQFDSIETADYIYNELDGMNLGDSGLKLDLRYVSANRNFEIPNEFKHLIETLDPNLKRFKSVDFAASCFATTKVTDDWD 748
            L  DA+ T EST +LAV N D++      L  ++ SFLP  G I+S+   P+E    R  ++   GPKE +                   +AE G   + +  R+YQ++RL+++Y + + DSI+TAD +Y E DG+    S  ++DLR++  + +FE         E   P+   +K   F  +     KV   WD
Sbjct:  213 LDNDAEHTEESTRRLAVCNMDWDRIRAEDLMVMLSSFLPPGGSILSVKIYPSEFGKARMAEEEVHGPKELVERVEPEDDSDEELVRQQDSDAEEGEDYHMEKLRQYQLNRLRYYYAVVECDSIDTADKVYKECDGIEYESSATRVDLRFIPDDTSFEEDTPSDECFEL--PDASSYKPRQFTTTALQQAKVDLTWD 406
[Close]
BLAST of ESF1, nucleolar pre-rRNA processing protein, homolog vs. Ensembl Zebrafish
Match: esf1 (ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-4917])

HSP 1 Score: 89.7373 bits (221), Expect = 3.793e-18
Identity = 61/198 (30.81%), Postives = 101/198 (51.01%), Query Frame = 2 
Query:  221 LVRDAKRTNESTNKLAVFNFDFENYPLSHLANIIKSFLPKTGKIISISKIPTEEYMERYQDDCSKGPKEYL----NAEPGVKAYKIYRK----YQISRLKFFYGIFQFDSIETADYIYNELDGMNLGDSGLKLDLRYVSANRNFEIPNEFKHLIETLDPNLKRFKSVDFAASCFATTKVTDDWD-VDHKLEAANLRAF 787
            + +DA R+++++ +LAV N D++      L  +  SF PK G ++S++  P+E   ER   + ++GP E      N +      +IYR+    YQ  RL+++Y + + DS ETA  IY E DG+    S   +DLR++  +  F+  +E K      D +   +K   F ++   T+KV   WD  DH   +A  R F
Sbjct:  222 MWKDAPRSDDTSRRLAVCNMDWDRLKAKDLLALFNSFKPKGGVVLSVTVYPSEFGKERIHAEQTQGPLELSSLPENPDADTDEQRIYREKVRDYQFKRLRYYYAVVECDSAETASKIYEECDGIEYETSCSMIDLRFIPDDVTFD--DEPKD--RATDVDYGSYKPKLFTSTATTTSKVELTWDETDHDRVSALCRKF 415
[Close]
BLAST of ESF1, nucleolar pre-rRNA processing protein, homolog vs. Ensembl Xenopus
Match: col12a1 (collagen, type XII, alpha 1 [Source:Xenbase;Acc:XB-GENE-1012295])

HSP 1 Score: 98.5969 bits (244), Expect = 7.746e-21
Identity = 68/190 (35.79%), Postives = 98/190 (51.58%), Query Frame = 2 
Query:  221 LVRDAKRTNESTNKLAVFNFDFENYPLSHLANIIKSFLPKTGKIISISKIPTEEYMERYQDDCSKGPKEYLNA------EPGVKAYKIYRKYQISRLKFFYGIFQFDSIETADYIYNELDGMNLGDSGLKLDLRYVSANRNFEIPNEFKHLIE----TLDPNLKRFKSVDFAASCFATTKVTDDWD-VDH 757
            L +DA R +E TN+LAV N D++      L  +  SF PK G I S+   P+E   ER +++   GP+E          E G+   K+ R+YQ  RLK++Y + + D+ ETA+ IY E DG+    S   +DLR+        IPN+ K   E     +D +L  +K   F +S  AT+KV   WD  DH
Sbjct:  284 LDKDAPRGDEVTNRLAVCNMDWDRLKAKDLLALFNSFKPKGGIIFSVKIYPSEYGKERLKEEELHGPQELKKVSEDTSDEQGIFKEKL-REYQFKRLKYYYAVVECDTPETANKIYEECDGLEFESSCSFVDLRF--------IPNDVKFADEPKDSAIDVDLSAYKPKLFTSSAVATSKVEITWDETDH 464
[Close]
BLAST of ESF1, nucleolar pre-rRNA processing protein, homolog vs. Ensembl Mouse
Match: Esf1 (ESF1 nucleolar pre-rRNA processing protein homolog [Source:MGI Symbol;Acc:MGI:1913830])

HSP 1 Score: 88.9669 bits (219), Expect = 7.795e-18
Identity = 60/185 (32.43%), Postives = 95/185 (51.35%), Query Frame = 2 
Query:  221 LVRDAKRTNESTNKLAVFNFDFENYPLSHLANIIKSFLPKTGKIISISKIPTEEYMERYQDDCSKGPKEYLN-----AEPGVKAYKIYRKYQISRLKFFYGIFQFDSIETADYIYNELDGMNLGDSGLKLDLRYVSANRNFEIPNEFKHLIETLDPNLKRFKSVDFAASCFATTKVTDDWD-VDH 757
            L +DA R +E T +LAV N D++      L  +  SF PK G + S+   P+E   ER +++  +GP E L+      E    + +  R YQ  RLK++Y + + DS ETA  IY + DG+    S   +DLR++  +  F+  +E K +   L+ +L  +K   F ++   T+ V   WD  DH
Sbjct:  330 LDKDAPRADEITRRLAVCNMDWDRLKAKDLLALFNSFKPKGGVVFSVKIYPSEFGKERMKEEQVQGPVELLSIPEDAPEKDWASREKLRDYQFKRLKYYYAVAECDSPETASKIYEDCDGLEFESSCSFIDLRFIPDDITFD--DEPKDV--ALEVDLTAYKPKYFTSAAMGTSTVEITWDETDH 510
[Close]
BLAST of ESF1, nucleolar pre-rRNA processing protein, homolog vs. UniProt/SwissProt
Match: sp|Q3V1V3|ESF1_MOUSE (ESF1 homolog OS=Mus musculus OX=10090 GN=Esf1 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 5.452e-17
Identity = 60/185 (32.43%), Postives = 95/185 (51.35%), Query Frame = 2 
Query:  221 LVRDAKRTNESTNKLAVFNFDFENYPLSHLANIIKSFLPKTGKIISISKIPTEEYMERYQDDCSKGPKEYLN-----AEPGVKAYKIYRKYQISRLKFFYGIFQFDSIETADYIYNELDGMNLGDSGLKLDLRYVSANRNFEIPNEFKHLIETLDPNLKRFKSVDFAASCFATTKVTDDWD-VDH 757
            L +DA R +E T +LAV N D++      L  +  SF PK G + S+   P+E   ER +++  +GP E L+      E    + +  R YQ  RLK++Y + + DS ETA  IY + DG+    S   +DLR++  +  F+  +E K +   L+ +L  +K   F ++   T+ V   WD  DH
Sbjct:  330 LDKDAPRADEITRRLAVCNMDWDRLKAKDLLALFNSFKPKGGVVFSVKIYPSEFGKERMKEEQVQGPVELLSIPEDAPEKDWASREKLRDYQFKRLKYYYAVAECDSPETASKIYEDCDGLEFESSCSFIDLRFIPDDITFD--DEPKDV--ALEVDLTAYKPKYFTSAAMGTSTVEITWDETDH 510
[Close]
BLAST of ESF1, nucleolar pre-rRNA processing protein, homolog vs. UniProt/SwissProt
Match: sp|Q9H501|ESF1_HUMAN (ESF1 homolog OS=Homo sapiens OX=9606 GN=ESF1 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 6.352e-17
Identity = 61/185 (32.97%), Postives = 93/185 (50.27%), Query Frame = 2 
Query:  221 LVRDAKRTNESTNKLAVFNFDFENYPLSHLANIIKSFLPKTGKIISISKIPTEEYMERYQDDCSKGPKEYLN-----AEPGVKAYKIYRKYQISRLKFFYGIFQFDSIETADYIYNELDGMNLGDSGLKLDLRYVSANRNFEIPNEFKHLIETLDPNLKRFKSVDFAASCFATTKVTDDWD-VDH 757
            L +DA R +E T +LAV N D++      L  +  SF PK G I S+   P+E   ER +++  +GP E L+      E    + +  R YQ  RLK++Y +   DS ETA  IY + DG+    S   +DLR++  +  F+  +E K +   +  NL  +K   F ++   T+ V   WD  DH
Sbjct:  336 LDKDAPRADEITRRLAVCNMDWDRLKAKDLLALFNSFKPKGGVIFSVKIYPSEFGKERMKEEQVQGPVELLSIPEDAPEKDWTSREKLRDYQFKRLKYYYAVVDCDSPETASKIYEDCDGLEFESSCSFIDLRFIPDDITFD--DEPKDVASEV--NLTAYKPKYFTSAAMGTSTVEITWDETDH 516
[Close]
BLAST of ESF1, nucleolar pre-rRNA processing protein, homolog vs. UniProt/SwissProt
Match: sp|Q76MT4|ESF1_RAT (ESF1 homolog OS=Rattus norvegicus OX=10116 GN=Esf1 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.221e-16
Identity = 59/185 (31.89%), Postives = 93/185 (50.27%), Query Frame = 2 
Query:  221 LVRDAKRTNESTNKLAVFNFDFENYPLSHLANIIKSFLPKTGKIISISKIPTEEYMERYQDDCSKGPKEYLN-----AEPGVKAYKIYRKYQISRLKFFYGIFQFDSIETADYIYNELDGMNLGDSGLKLDLRYVSANRNFEIPNEFKHLIETLDPNLKRFKSVDFAASCFATTKVTDDWD-VDH 757
            L +DA R +E T +LAV N D++      L  +  SF PK G + S+   P+E   +R +++  +GP E L+      E    + +  R YQ  RLK++Y + + DS ETA  IY + DG+    S   +DLR++  +  F+  +E K     +D  L  +K   F ++   T+ V   WD  DH
Sbjct:  328 LDKDAPRADEITRRLAVCNMDWDRLKAKDLLALFNSFKPKGGVVFSVKIYPSEFGKQRMKEEQIQGPVELLSIPEDAPEKDWASREKLRDYQFKRLKYYYAVVECDSPETASKIYEDCDGLEFESSCSFIDLRFIPDDITFD--DEPKDAASEVD--LTAYKPKYFTSAAMGTSTVEITWDETDH 508
[Close]
BLAST of ESF1, nucleolar pre-rRNA processing protein, homolog vs. UniProt/SwissProt
Match: sp|Q756J5|ESF1_ASHGO (Pre-rRNA-processing protein ESF1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=ESF1 PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.024e-10
Identity = 50/187 (26.74%), Postives = 84/187 (44.92%), Query Frame = 2 
Query:  263 LAVFNFDFENYPLSHLANIIKSFLPKTGKIISISKIPTEEYMERYQDDCSKGPKEYL-------------NAEPGVKAY------------KIYRKYQISRLKFFYGIFQFDSIETADYIYNELDGMNLGDSGLKLDLRYVSANRNFEIPNEFKHLIETLDPNLKRFKSVDFAASCFATTKVTDDWD 748
            LAV N D+++   + L     SF+P+ GKI  ++  P+E   ER Q +  +GP   +             + E G+K              K  R+YQ+ RL+++Y +   +++ TA+ IY   DG     +    DLRYV     F+  +E +    ++    K +K V F+ S    ++V   WD
Sbjct:  153 LAVVNLDWDHVKCADLLVAFNSFVPEGGKIERVAIYPSEFGKERMQREEVEGPPREVFKSKKDKKAKQDDDDEIGLKDLYEQGDAEKDYDSKALRRYQLERLRYYYAVVYCNNVATAEAIYQNCDGTEYESTANMFDLRYVPEGVTFD--DEPREECASV---PKDYKPVQFSTSALQHSQVKLTWD 334
[Close]
BLAST of ESF1, nucleolar pre-rRNA processing protein, homolog vs. UniProt/SwissProt
Match: sp|O74828|ESF1_SCHPO (Pre-rRNA-processing protein esf1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=esf1 PE=1 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 1.614e-8
Identity = 48/203 (23.65%), Postives = 85/203 (41.87%), Query Frame = 2 
Query:  254 TNKLAVFNFDFENYPLSHLANIIKSFLPKTGKIISISKIPTEEYMERYQDDCSKGPKE--YLNAEPGVKAYKIY----------------------------------RKYQISRLKFFYGIFQFDSIETADYIYNELDGMNLGDSGLKLDLRYVSANRNFEIPNEFKHLIETLDPNLKRFKSVDFAASCFATTKVTDDWDVD 754
            TN+LAV N D++N     L   + SF P  GK++ +S  P+E    R   +  +GP    +  A+    + +++                                  R+YQ+ RL+++Y + + DS+ TA  IY   DG     S    DLR++  +  F+  ++    + T  P  ++++  DF       +KV   WD +
Sbjct:  179 TNRLAVVNMDWDNLQAVDLFVALSSFCPPGGKLLKVSIYPSEFGKSRMAAEHVQGPPRDIFTPADNQPSSAELHEAQKFGFDNNESDQDEEDALIEEDLGNEFDMVKLRQYQLERLRYYYAVVECDSVRTAKVIYETCDGAEYETSANIYDLRFIPDDVTFD--DDESREVCTKAP--EKYEPRDFVTDALQHSKVKLSWDAE 377
[Close]
BLAST of ESF1, nucleolar pre-rRNA processing protein, homolog vs. TrEMBL
Match: A0A094ZJY9 (ESF1-like protein OS=Schistosoma haematobium OX=6185 GN=MS3_02469 PE=4 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.642e-22
Identity = 61/207 (29.47%), Postives = 107/207 (51.69%), Query Frame = 2 
Query:  221 LVRDAKRTNESTNKLAVFNFDFENYPLSHLANIIKSFLPKTGKIISISKIPTEEYMERYQDDCSKGPKEYLNAEPGV------------------------------KAYKIYRKYQISRLKFFYGIFQFDSIETADYIYNELDGMNLGDSGLKLDLRYVSANRNFEIPNEFKHLI-ETLDPNLKRFKSVDFAASCFATTKVTDDWD 748
            L +D+    +++++LA+ +FD++N     +  +++SFLP  G I  ++  P+E  ++R  D+   GP E   +E                                 K  +  R+YQ++RLK+FY I +FDS+ETA+ IY   DG+    SG +LDLR+V  ++ FE+P+E+ HL+ E  + N  ++  + F  S   +T++   WD
Sbjct:  119 LTKDSVPATQTSHRLALLHFDWDNAKPETIYMVLESFLPARGHIEKVTIYPSEFGIKRMADEAIHGPLELRPSESDTECNENNNLTVENSTMALDVDEKSGWRNASSKLRRRIREYQLARLKYFYAIIEFDSVETAEAIYTACDGLEYESSGSRLDLRFVDNDQQFEVPSEYAHLVSECREINKTKYAPIRFETSALHSTRIGITWD 325
[Close]
BLAST of ESF1, nucleolar pre-rRNA processing protein, homolog vs. TrEMBL
Match: A0A183K3N5 (Uncharacterized protein OS=Schistosoma curassoni OX=6186 GN=SCUD_LOCUS9603 PE=4 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.710e-22
Identity = 61/207 (29.47%), Postives = 107/207 (51.69%), Query Frame = 2 
Query:  221 LVRDAKRTNESTNKLAVFNFDFENYPLSHLANIIKSFLPKTGKIISISKIPTEEYMERYQDDCSKGPKEYLNAEPGV------------------------------KAYKIYRKYQISRLKFFYGIFQFDSIETADYIYNELDGMNLGDSGLKLDLRYVSANRNFEIPNEFKHLI-ETLDPNLKRFKSVDFAASCFATTKVTDDWD 748
            L +D+    +++++LA+ +FD++N     +  +++SFLP  G I  ++  P+E  ++R  D+   GP E   +E                                 K  +  R+YQ++RLK+FY I +FDS+ETA+ IY   DG+    SG +LDLR+V  ++ FE+P+E+ HL+ E  + N  ++  + F  S   +T++   WD
Sbjct:  119 LTKDSVPATQTSHRLALLHFDWDNAKPETIYMVLESFLPARGHIEKVTIYPSEFGIKRMADEAIHGPLELRPSESDTECNENNNLTVENSTMALDVDEKSGWRNASSKLRRRIREYQLARLKYFYAIIEFDSVETAEAIYTACDGLEYESSGSRLDLRFVDNDQQFEVPSEYAHLVSECREINKTKYAPIRFETSALHSTRIGITWD 325
[Close]
BLAST of ESF1, nucleolar pre-rRNA processing protein, homolog vs. TrEMBL
Match: A0A183NW82 (Uncharacterized protein OS=Schistosoma mattheei OX=31246 GN=SMTD_LOCUS6368 PE=4 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.970e-22
Identity = 61/207 (29.47%), Postives = 107/207 (51.69%), Query Frame = 2 
Query:  221 LVRDAKRTNESTNKLAVFNFDFENYPLSHLANIIKSFLPKTGKIISISKIPTEEYMERYQDDCSKGPKEYLNAEPGV------------------------------KAYKIYRKYQISRLKFFYGIFQFDSIETADYIYNELDGMNLGDSGLKLDLRYVSANRNFEIPNEFKHLI-ETLDPNLKRFKSVDFAASCFATTKVTDDWD 748
            L +D+    +++++LA+ +FD++N     +  +++SFLP  G I  ++  P+E  ++R  D+   GP E   +E                                 K  +  R+YQ++RLK+FY I +FDS+ETA+ IY   DG+    SG +LDLR+V  ++ FE+P+E+ HL+ E  + N  ++  + F  S   +T++   WD
Sbjct:  119 LTKDSVPATQTSHRLALLHFDWDNAKPETIYMVLESFLPARGHIEKVTIYPSEFGIKRMADEAIHGPLELRPSESDTECNENNNLTVENSTMALDVDEKSGWRNASSKLRRRIREYQLARLKYFYAIIEFDSVETAEAIYTACDGLEYESSGSRLDLRFVDNDQQFEVPSEYAHLVSECREINKTKYAPIRFETSALHSTRIGITWD 325
[Close]
BLAST of ESF1, nucleolar pre-rRNA processing protein, homolog vs. TrEMBL
Match: A0A183MJS3 (Uncharacterized protein OS=Schistosoma margrebowiei OX=48269 GN=SMRZ_LOCUS16298 PE=4 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.524e-22
Identity = 61/207 (29.47%), Postives = 107/207 (51.69%), Query Frame = 2 
Query:  221 LVRDAKRTNESTNKLAVFNFDFENYPLSHLANIIKSFLPKTGKIISISKIPTEEYMERYQDDCSKGPKEYLNAEPGV------------------------------KAYKIYRKYQISRLKFFYGIFQFDSIETADYIYNELDGMNLGDSGLKLDLRYVSANRNFEIPNEFKHLI-ETLDPNLKRFKSVDFAASCFATTKVTDDWD 748
            L +D+    +++++LA+ +FD++N     +  +++SFLP  G I  ++  P+E  ++R  D+   GP E   +E                                 K  +  R+YQ++RLK+FY I +FDS+ETA+ IY   DG+    SG +LDLR+V  ++ FE+P+E+ HL+ E  + N  ++  + F  S   +T++   WD
Sbjct:  119 LTKDSVPATQTSHRLALLHFDWDNAKPETIYMVLESFLPARGHIEKVTIYPSEFGIKRMADEAIHGPLELRPSESDTECNENNSLTVENSTMALDVDEKSGWRNASSKLRRRIREYQLARLKYFYAIIEFDSVETAEAIYTACDGLEYESSGSRLDLRFVDNDQQFEVPSEYAHLVSECREINKTKYAPIRFETSALHSTRIGITWD 325
[Close]
BLAST of ESF1, nucleolar pre-rRNA processing protein, homolog vs. TrEMBL
Match: A0A183RBE5 (Uncharacterized protein OS=Schistosoma rodhaini OX=6188 PE=4 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.016e-22
Identity = 61/207 (29.47%), Postives = 106/207 (51.21%), Query Frame = 2 
Query:  221 LVRDAKRTNESTNKLAVFNFDFENYPLSHLANIIKSFLPKTGKIISISKIPTEEYMERYQDDCSKGPKEYLNAE------------------------------PGVKAYKIYRKYQISRLKFFYGIFQFDSIETADYIYNELDGMNLGDSGLKLDLRYVSANRNFEIPNEFKHLI-ETLDPNLKRFKSVDFAASCFATTKVTDDWD 748
            L +D+    +++++LA+ +FD++N     +  +++SFLP  G I  ++  P+E  ++R  D+   GP E   +E                                 K  +  R+YQ++RLK+FY I +FDS+ETA+ IY   DG+    SG +LDLR+V  ++ FE+P E+ HL+ E  + N  ++  + F  S   +T++   WD
Sbjct:  119 LTKDSVPATQTSHRLALLHFDWDNAKPETIYMVLESFLPARGHIEKVTIYPSEFGIKRMADEALHGPLELRPSESDTECNENNNLTVENSTMAIDVDEKSGWRNASSKLRRRIREYQLARLKYFYAIIEFDSVETAEAIYTACDGLEYESSGSRLDLRFVDNDQQFEVPPEYAHLVSECREINKTKYAPIRFETSALHSTRIGITWD 325
[Close]
BLAST of ESF1, nucleolar pre-rRNA processing protein, homolog vs. Ensembl Cavefish
Match: esf1 (ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-4917])

HSP 1 Score: 93.2041 bits (230), Expect = 2.548e-19
Identity = 62/191 (32.46%), Postives = 95/191 (49.74%), Query Frame = 2 
Query:  221 LVRDAKRTNESTNKLAVFNFDFENYPLSHLANIIKSFLPKTGKIISISKIPTEEYMERYQDDCSKGPKEYLN----AEPGVKAYKIYRK----YQISRLKFFYGIFQFDSIETADYIYNELDGMNLGDSGLKLDLRYVSANRNFEIPNEFKHL---IETLDPNLKRFKSVDFAASCFATTKVTDDWD-VDH 757
            + +DA RT E + +LAV N D++      L  +  SF PK G ++S++  P+E   ER + + ++GP E  N     E   +  +IYR+    YQ  RL+++Y + + DS+ETA  IY E DG     S   +DLR++  +  FE     K +   + T  P L       F ++   T KV   WD  DH
Sbjct:  195 MWKDAPRTEEMSRRLAVCNMDWDRIKAKDLLALFSSFKPKDGVVLSVTIYPSEFGKERMKAEETQGPLELTNLPDDPEADTEDQRIYREKVRDYQFKRLRYYYAVVECDSVETAAKIYEECDGFEYESSCSMVDLRFIPDDVTFEDEPRDKAVEVDLSTYQPKL-------FTSATTTTAKVELTWDETDH 378
[Close]
BLAST of ESF1, nucleolar pre-rRNA processing protein, homolog vs. Ensembl Cavefish
Match: esf1 (ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-4917])

HSP 1 Score: 83.5741 bits (205), Expect = 2.265e-16
Identity = 61/190 (32.11%), Postives = 94/190 (49.47%), Query Frame = 2 
Query:  221 LVRDAKRTNESTNKLAVFNFDFENYPLSHLANIIKSFLPKTGKIISISKIPTEEYMERYQDDCSKGPKEYLNAEPGVKA---YKIYRK----YQISRLKFFYGIFQFDSIETADYIYNELDGMNLGDSGLKLDLRYVSANRNFEIPNEFKHL---IETLDPNLKRFKSVDFAASCFATTKVTDDWD-VDH 757
            + +DA RT E + +LAV N D++      L  +  SF PK G ++S++  P+E   ER + + ++GP E  N     +A    +IYR+    YQ  RL+++Y + + DS+ETA  IY E DG     S   +DL ++  +  FE     K +   + T  P L       F ++   T KV   WD  DH
Sbjct:  222 MWKDAPRTEEMSRRLAVCNMDWDRIKAKDLLALFSSFKPKDGVVLSVTIYPSEFGKERMKAEETQGPLELTNLPDDPEADTEDQIYREKVRDYQFKRLRYYYAVVECDSVETAAKIYEECDGFEYESSCSMVDL-FIPDDVTFEDEPRDKAVEVDLSTYQPKL-------FTSATTTTAKVELTWDETDH 403
[Close]
BLAST of ESF1, nucleolar pre-rRNA processing protein, homolog vs. Ensembl Sea Lamprey
Match: esf1 (ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-4917])

HSP 1 Score: 80.1073 bits (196), Expect = 6.543e-16
Identity = 60/191 (31.41%), Postives = 91/191 (47.64%), Query Frame = 2 
Query:  230 DAKRTNESTNKLAVFNFDFENYPLSHLANIIKSFLPKTGKIISISKIPTEEYMERYQDDCSKGPKEY-------------LNAEPGVKAYKIYRKYQISRLKFFYGIFQFDSIETADYIYNELDGMNLGDSGLKLDLRYVSANRNF-EIPNEFKHLIETLDPNLKRFKSVDFAASCFATTKVTDDW-DVDH 757
            DA R +  T +LAV N D++      L  +  SF PK G ++S+   P+E   ER + +   GP E              LNA+  V   K+ RKYQ +RLK+FY + Q DS ETA+ IY   D M    S   +DLR++     F + P +       ++ + + +K   F ++    +KV   W + DH
Sbjct:  292 DAPRADNVTRRLAVCNIDWDRIKAKDLLVLFDSFKPKCGVVMSVKIYPSEYGKERMEHEKLHGPAELADNTLPDDIQDSQLNAKDEVFQEKL-RKYQFNRLKYFYAVVQCDSPETANAIYEGCDRMEYEASSSFIDLRFIPDGMTFDDEPAD-----SAIEVDSESYKPKHFTSAALGMSKVELTWEETDH 476
[Close]
BLAST of ESF1, nucleolar pre-rRNA processing protein, homolog vs. Ensembl Nematostella
Match: EDO33365 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SSG1])

HSP 1 Score: 70.8626 bits (172), Expect = 7.782e-13
Identity = 50/187 (26.74%), Postives = 91/187 (48.66%), Query Frame = 2 
Query:  221 LVRDAKRTNESTNKLAVFNFDFENYPLSHLANIIKSFLPKTGKIISISKIPTEEYMERYQDDCSKGPKEYLNAEPGVKAYK----------IYRKYQISRLKFFYGIFQFDSIETADYIYNELDGMNLGDSGLKLDLRYVSANRNFEI-PNEFKHLIETLDPNLKRFKSVDFAASCFATTKVTDDWD 748
            L + AK  +++T +LAV + D++      L  I+   +   G +  +   P+E  +ER + + + GP E   +    + ++            R+YQ+++LK++Y + + DS ETA++IY E DG+    +G  LDLR++  +  FE  P        T  P+L  +K  +F  +    + V   WD
Sbjct:  216 LGKGAKLRSDATRRLAVCSLDWDRLAAQDLFGILLHMM--MGTLFVLKIFPSEFGLERMKAEEALGPTELCASNQAKEDHEDVSNQEFSREKLRQYQLNKLKYYYAVVECDSAETANFIYEECDGVEFEMTGNLLDLRFIPDDMEFEHEPTS----SATEMPDLNTYKPPEFETTALHQSNVKLTWD 396
[Close]
BLAST of ESF1, nucleolar pre-rRNA processing protein, homolog vs. Ensembl Medaka
Match: esf1 (ESF1 nucleolar pre-rRNA processing protein homolog [Source:NCBI gene;Acc:101168427])

HSP 1 Score: 80.4925 bits (197), Expect = 1.363e-15
Identity = 63/183 (34.43%), Postives = 87/183 (47.54%), Query Frame = 2 
Query:  278 FDFENYPLSHLANIIKSFLPKTGKIISISKIPTEEYMERYQDDCSKGPKEYLNAEPG----------VKAYKIYRKYQISRLKFFYGIFQFDSIETADYIYNELDGMNLGDSGLKLDLRYVSANRNF--EIPNEFKHLIETLDPNLKRFKSVDFAASCFATTKVTDDWD-VDHKLEAANLRAF 787
             D++      L  +  SF PK G ++S+   P+E   ER +++ ++GP E L A P           V   KI R YQ  RLK+FY + + DS++TA  IY E DG     S   LDLR+V  +  F  E  +E  H+      N   F    F +S  AT+KV   WD  DH+   A  R F
Sbjct:    1 MDWDRMKARDLLVLFGSFAPKGGAVLSVRIYPSEFGKERLKEEEARGPPE-LKALPEDSEEDTEEERVHREKI-RDYQFKRLKYFYAVVECDSVDTAAKIYEECDGFEYESSCSVLDLRFVPEDMTFDEEPRDEATHV------NPSAFTPKLFTSSAAATSKVQLTWDETDHERLTALNRKF 175
[Close]
BLAST of ESF1, nucleolar pre-rRNA processing protein, homolog vs. Planmine SMEST
Match: SMESG000043665.1 (SMESG000043665.1)

HSP 1 Score: 664.07 bits (1712), Expect = 0.000e+0
Identity = 454/463 (98.06%), Postives = 461/463 (99.57%), Query Frame = 2 
Query:   41 MNDTRFXXXXXXXXXXXXXXXXXXXXXDDEHNEEVIEPNHDISTXXXXXXXXXXXXXXXNLVRDAKRTNESTNKLAVFNFDFENYPLSHLANIIKSFLPKTGKIISISKIPTEEYMERYQDDCSKGPKEYLNAEPGVKAYKIYRKYQISRLKFFYGIFQFDSIETADYIYNELDGMNLGDSGLKLDLRYVSANRNFEIPNEFKHLIETLDPNLKRFKSVDFAASCFATTKVTDDWDVDHKLEAANLRAFQESDEDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLGLPAEEISEPEEAVNQSDIEMSSCDDYGDDFTKXXXXXXXXXXXXXXKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYMKSIAGSDAMYDACKDLLANPHLYRIDRNNQKYLDALMITEMMNECAATRGIPADFPKPDFSQFETSRKSKAKRPANRTSRIEPIM 1429
            MNDTRFNSLNNKNLKNNRGRNLINLNNDDEHNEEVIEPNHDISTFEELDDEDIIDIDFDNLVRDAKRTNESTNKLAVFNFDFENYPLSHLANIIKSFLPK+GKIISISKIPTEEYMERYQDDCSKGPKEYLNAEPGVKAYKIYRKYQISRLKFFYGIFQFDSIETADYIYNELDGMNLGDSGLKLDLRYVSANRNFEIP+EFKHLIETLDPNLKRFKSVDFAASCFATTKVTDDWDVDHKLEAANLRAFQESDEDLSEIEIGVSESES+NSTTNETAEERVYRKKEKVKKVRELLGLPAEEISEPEEAVNQSDIEMSSCDDYGDD T+EQEISNSEEEETNQKERKQKKISQRMKKKLILKEIDEKKRKELRERREY+KSIAGSDAMYDACKDLLANPHLYRIDRNNQKYLDALMITEMMNECAA RGIPADFPKPDFSQFETSRKSKAKRPANRTSRIEP++
Sbjct:    1 MNDTRFNSLNNKNLKNNRGRNLINLNNDDEHNEEVIEPNHDISTFEELDDEDIIDIDFDNLVRDAKRTNESTNKLAVFNFDFENYPLSHLANIIKSFLPKSGKIISISKIPTEEYMERYQDDCSKGPKEYLNAEPGVKAYKIYRKYQISRLKFFYGIFQFDSIETADYIYNELDGMNLGDSGLKLDLRYVSANRNFEIPDEFKHLIETLDPNLKRFKSVDFAASCFATTKVTDDWDVDHKLEAANLRAFQESDEDLSEIEIGVSESESENSTTNETAEERVYRKKEKVKKVRELLGLPAEEISEPEEAVNQSDIEMSSCDDYGDDVTEEQEISNSEEEETNQKERKQKKISQRMKKKLILKEIDEKKRKELRERREYLKSIAGSDAMYDACKDLLANPHLYRIDRNNQKYLDALMITEMMNECAAARGIPADFPKPDFSQFETSRKSKAKRPANRTSRIEPVI 463
The following BLAST results are available for this feature:
BLAST of ESF1, nucleolar pre-rRNA processing protein, homolog vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 2
Match NameE-valueIdentityDescription
ESF11.999e-1832.80ESF1 nucleolar pre-rRNA processing protein homolog... [more]
ESF11.323e-1732.97ESF1 nucleolar pre-rRNA processing protein homolog... [more]
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BLAST of ESF1, nucleolar pre-rRNA processing protein, homolog vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 2
Match NameE-valueIdentityDescription
F58B3.47.316e-1627.27pep chromosome:WBcel235:IV:11628757:11631841:-1 ge... [more]
F58B3.47.316e-1627.27pep chromosome:WBcel235:IV:11628757:11631850:-1 ge... [more]
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BLAST of ESF1, nucleolar pre-rRNA processing protein, homolog vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 1
Match NameE-valueIdentityDescription
CG114177.129e-2030.61gene:FBgn0024364 transcript:FBtr0070212[more]
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BLAST of ESF1, nucleolar pre-rRNA processing protein, homolog vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
esf13.793e-1830.81ESF1, nucleolar pre-rRNA processing protein, homol... [more]
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BLAST of ESF1, nucleolar pre-rRNA processing protein, homolog vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 1
Match NameE-valueIdentityDescription
col12a17.746e-2135.79collagen, type XII, alpha 1 [Source:Xenbase;Acc:XB... [more]
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BLAST of ESF1, nucleolar pre-rRNA processing protein, homolog vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 1
Match NameE-valueIdentityDescription
Esf17.795e-1832.43ESF1 nucleolar pre-rRNA processing protein homolog... [more]
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BLAST of ESF1, nucleolar pre-rRNA processing protein, homolog vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q3V1V3|ESF1_MOUSE5.452e-1732.43ESF1 homolog OS=Mus musculus OX=10090 GN=Esf1 PE=1... [more]
sp|Q9H501|ESF1_HUMAN6.352e-1732.97ESF1 homolog OS=Homo sapiens OX=9606 GN=ESF1 PE=1 ... [more]
sp|Q76MT4|ESF1_RAT2.221e-1631.89ESF1 homolog OS=Rattus norvegicus OX=10116 GN=Esf1... [more]
sp|Q756J5|ESF1_ASHGO3.024e-1026.74Pre-rRNA-processing protein ESF1 OS=Ashbya gossypi... [more]
sp|O74828|ESF1_SCHPO1.614e-823.65Pre-rRNA-processing protein esf1 OS=Schizosaccharo... [more]
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BLAST of ESF1, nucleolar pre-rRNA processing protein, homolog vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A094ZJY93.642e-2229.47ESF1-like protein OS=Schistosoma haematobium OX=61... [more]
A0A183K3N53.710e-2229.47Uncharacterized protein OS=Schistosoma curassoni O... [more]
A0A183NW823.970e-2229.47Uncharacterized protein OS=Schistosoma mattheei OX... [more]
A0A183MJS34.524e-2229.47Uncharacterized protein OS=Schistosoma margrebowie... [more]
A0A183RBE56.016e-2229.47Uncharacterized protein OS=Schistosoma rodhaini OX... [more]
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BLAST of ESF1, nucleolar pre-rRNA processing protein, homolog vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
esf12.548e-1932.46ESF1, nucleolar pre-rRNA processing protein, homol... [more]
esf12.265e-1632.11ESF1, nucleolar pre-rRNA processing protein, homol... [more]
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BLAST of ESF1, nucleolar pre-rRNA processing protein, homolog vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
esf16.543e-1631.41ESF1, nucleolar pre-rRNA processing protein, homol... [more]
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BLAST of ESF1, nucleolar pre-rRNA processing protein, homolog vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of ESF1, nucleolar pre-rRNA processing protein, homolog vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO333657.782e-1326.74Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of ESF1, nucleolar pre-rRNA processing protein, homolog vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1
Match NameE-valueIdentityDescription
esf11.363e-1534.43ESF1 nucleolar pre-rRNA processing protein homolog... [more]
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BLAST of ESF1, nucleolar pre-rRNA processing protein, homolog vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000043665.10.000e+098.06SMESG000043665.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30008086 ID=SMED30008086|Name=ESF1, nucleolar pre-rRNA processing protein, homolog|organism=Schmidtea mediterranea sexual|type=transcript|length=1862bp
TTCATATTTATTTGAATTAACTTTATAAGAGTCGTTTAAAATGAATGATA
CAAGATTTAATTCTTTAAATAATAAAAACCTTAAAAATAATCGTGGAAGA
AATTTGATAAATTTAAATAATGATGATGAACATAATGAGGAAGTTATCGA
ACCAAATCATGATATTTCAACTTTTGAAGAATTAGACGATGAAGATATAA
TTGACATTGATTTTGATAATCTTGTTCGTGATGCTAAAAGAACAAATGAA
TCCACTAACAAATTAGCAGTATTTAATTTTGATTTCGAAAATTATCCATT
ATCTCATTTGGCAAATATTATAAAAAGTTTTTTGCCAAAAACCGGAAAAA
TAATATCCATTTCAAAAATCCCCACAGAAGAATATATGGAAAGATATCAA
GATGACTGTTCAAAAGGTCCCAAAGAATATCTCAATGCAGAACCCGGAGT
AAAAGCCTACAAAATCTATCGAAAATATCAAATATCTCGTTTGAAATTTT
TCTACGGAATTTTCCAGTTCGATTCCATCGAGACAGCGGACTATATTTAC
AATGAGCTCGATGGAATGAATTTGGGTGACAGTGGATTGAAATTAGATCT
CCGTTACGTCTCTGCCAATCGAAATTTCGAAATTCCCAATGAATTTAAAC
ATCTCATCGAAACGCTGGATCCAAATTTGAAAAGATTCAAATCGGTCGAT
TTTGCCGCGAGTTGCTTTGCCACCACCAAAGTAACCGACGATTGGGATGT
CGATCATAAATTGGAAGCGGCAAATTTGAGAGCTTTCCAAGAATCAGATG
AGGATTTATCGGAAATTGAAATCGGAGTATCGGAATCGGAAAGTGACAAT
TCAACAACCAATGAAACTGCAGAGGAGAGAGTTTATAGGAAAAAGGAAAA
AGTCAAGAAAGTTCGAGAATTATTGGGATTACCAGCGGAGGAAATCTCGG
AACCGGAGGAAGCGGTAAATCAATCCGATATTGAAATGAGCTCATGTGAC
GATTATGGTGACGATTTTACCAAGGAACAGGAAATATCGAATTCCGAGGA
GGAAGAAACAAATCAGAAAGAAAGAAAACAGAAAAAAATCAGCCAACGAA
TGAAAAAAAAATTGATTCTCAAAGAAATCGATGAAAAGAAACGAAAAGAA
TTGCGAGAGAGGCGAGAATATATGAAATCGATCGCCGGTTCCGATGCCAT
GTATGACGCGTGCAAGGATTTACTTGCTAACCCGCATCTCTATAGGATCG
ATCGAAACAACCAGAAATATCTGGATGCGCTCATGATCACCGAGATGATG
AATGAATGCGCTGCCACAAGAGGAATCCCTGCTGATTTCCCGAAGCCGGA
TTTCAGTCAATTTGAAACCAGTCGGAAATCGAAAGCCAAGCGGCCGGCCA
ATCGGACGTCTCGAATCGAACCGATAATGACAGGAAATGAATCCTAACTA
AGATCACAAGGTGATTTCGATATGCAATTTTTTGAAGCCGATCAAAGTTC
TGTAAATGAAAATTGGATCAATTCGAATTATTCACATGAATTACAAGGAA
GACCATTAATTGCTCCAACACTACATCGTTTTACTGAGCGTCATTTTTCA
CATACATTTCATGAACAAAGTGGTCTAGTTTGCCACGTACAAAAATGATG
ACTAGATGTCATTGCTCATATTGTCAAATGACTTTTTGTGTATTTTTGTG
TTTTAGAAATTTCCGTAGAAAACTACATTAAGATATTGGTGGCAGGTAAA
AGTTAAAATCCTCGATGTTTCAAAAGTTACAGTTTCATGCTGGCTACAAA
TAAAACAAACGAACTTATGATAAATTTGTCAATTTAGAGATGCCATTTCC
CGGATTTCCAAA
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protein sequence of SMED30008086-orf-1

>SMED30008086-orf-1 ID=SMED30008086-orf-1|Name=SMED30008086-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=469bp
MNDTRFNSLNNKNLKNNRGRNLINLNNDDEHNEEVIEPNHDISTFEELDD
EDIIDIDFDNLVRDAKRTNESTNKLAVFNFDFENYPLSHLANIIKSFLPK
TGKIISISKIPTEEYMERYQDDCSKGPKEYLNAEPGVKAYKIYRKYQISR
LKFFYGIFQFDSIETADYIYNELDGMNLGDSGLKLDLRYVSANRNFEIPN
EFKHLIETLDPNLKRFKSVDFAASCFATTKVTDDWDVDHKLEAANLRAFQ
ESDEDLSEIEIGVSESESDNSTTNETAEERVYRKKEKVKKVRELLGLPAE
EISEPEEAVNQSDIEMSSCDDYGDDFTKEQEISNSEEEETNQKERKQKKI
SQRMKKKLILKEIDEKKRKELRERREYMKSIAGSDAMYDACKDLLANPHL
YRIDRNNQKYLDALMITEMMNECAATRGIPADFPKPDFSQFETSRKSKAK
RPANRTSRIEPIMTGNES*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: biological process
TermDefinition
GO:0006364rRNA processing
GO:0006351transcription, DNA-templated
GO:0006355regulation of transcription, DNA-templated
GO:0008150biological_process
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000429neoblast
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR039754Esf1
IPR011528NERD
Vocabulary: molecular function
TermDefinition
GO:0003723RNA binding
Vocabulary: cellular component
TermDefinition
GO:0005615extracellular space
GO:0005634nucleus
GO:0005654nucleoplasm
GO:0005730nucleolus
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 439..468
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 261..282
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 323..351
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 439..455
IPR039754Pre-rRNA-processing protein Esf1PANTHERPTHR12202UNCHARACTERIZEDcoord: 12..386