SMED30008062

Overview
NameSMED30008062
Smed IDSMED30008062
Length (bp)888
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30008062 (SMED30008062) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30008062 (SMED30008062) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30008062 (SMED30008062) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30008062 (SMED30008062) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30008062

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 6

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30008062h1SMcG0022391 SmedASXL_008921SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
nervous systemSMED30008062h1SMcG0022391 dd_Smed_v4_16057_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30008062h1SMcG0022391 dd_Smed_v4_16057_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymaSMED30008062h1SMcG0022391 dd_Smed_v4_16057_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30008062h1SMcG0022391 dd_Smed_v4_16057_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
secretory systemSMED30008062h1SMcG0022391 dd_Smed_v6_16057_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30008062 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.005001:21383..25402 -4431
Homology
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BLAST of SMED30008062 vs. TrEMBL
Match: A0A1S3IZ14 (uncharacterized protein LOC106168312 OS=Lingula unguis OX=7574 GN=LOC106168312 PE=4 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.434e-12
Identity = 49/166 (29.52%), Postives = 97/166 (58.43%), Query Frame = 1 
Query:  292 GGENVKQEFIKLYDFQELTVMEYKRLKQHIDTLAKDYSCLQTSNNWLSRYRMLKSMIKRCVMHLKV--GEDTQISAGVAKEINR-------------KCEEKYEKLNSETLIEEKTMLKNQIEMHQARTAILREVFSDLDTQYTASKKYVALTRYQMLNALIKDLL 744
            G   V++E  +L +  E T  +YK+ +  ++ L ++Y       ++  RYR LKSMIKR V HL++  G D  +S+G+ K++ R             + EE+Y+ L+ + L+E+   ++ QI   + +T I++++  +++ QY  SK+Y+A+ RY+++  +IK+++
Sbjct:   15 GQSEVRRETEQLCNDLEATQQDYKKFRLLVEQLHREY-VESKELDFFRRYRQLKSMIKRTVTHLRLSNGGDA-LSSGL-KQMCRDFVRQKDTSAAAQRIEERYKDLSDDALLEQNVEIQEQITDTKRKTDIIKDLIHEMEVQYEESKRYIAIQRYRLMKGMIKEVI 177
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BLAST of SMED30008062 vs. TrEMBL
Match: R7V1A0 (Uncharacterized protein OS=Capitella teleta OX=283909 GN=CAPTEDRAFT_200340 PE=4 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.200e-12
Identity = 41/135 (30.37%), Postives = 81/135 (60.00%), Query Frame = 1 
Query:  355 EYKRLKQHIDTLAKDYSCLQTSNNWLSRYRMLKSMIKRCVMHLKVGEDTQ-----ISAGVAKEINRKCEEKYEKLNSETLIEEKTMLKNQIEMHQARTAILREVFSDLDTQYTASKKYVALTRYQMLNALIKDLL 744
            EYK L+  ++ L+++Y   +  + +  RY MLK MIKR V+HLK+  + +      + G  KE NRK EE    L+ + + +E   ++ QI+ ++ + ++++++   +D  Y  SK+Y+A+ RY+++  +IK ++
Sbjct:   35 EYKHLRGVVEQLSREYEDSKEVD-FFRRYGMLKGMIKRSVLHLKLTSNEEHNPHVPTCGKQKEENRKREEHIVGLSKDEITQENDEIQEQIKEYRRKISMMKDLIEQMDHSYEVSKRYIAVQRYRLMKVMIKTVV 168
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BLAST of SMED30008062 vs. TrEMBL
Match: V4A728 (Uncharacterized protein OS=Lottia gigantea OX=225164 GN=LOTGIDRAFT_229008 PE=4 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.376e-10
Identity = 46/165 (27.88%), Postives = 88/165 (53.33%), Query Frame = 1 
Query:  298 ENVKQEFIKLYDFQELTVMEYKRLKQHIDTLAKDYSCLQTSNNWLSRYRMLKSMIKRCVMHLKVGEDTQISAGVAKEI----------------NRKCEEKYEKLNSETLIEEKTMLKNQIEMHQARTAILREVFSDLDTQYTASKKYVALTRYQMLNALIKDLL 744
            + +++E  +L +  E     YK+L+Q +D L ++Y       + + RY  LK+M+KR ++H K+  D Q SA  ++ I                 ++ EE+  +L+ E +I   + + +QI+    + +I+R +  +L+  Y +SK+YV L RY+ML  +IK ++
Sbjct:   61 DEIRREHEQLSNDLESVQRNYKKLRQVVDQLEREYE-ESKEFDPVRRYEKLKNMVKRTILHFKLDPDQQGSASQSQGIVGLMQGCKQYAQHLESTKRREERCSRLSREDIIIANSKMGDQIKECNRKCSIIRGLVENLERGYESSKRYVVLQRYRMLKTMIKTVI 224
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BLAST of SMED30008062 vs. TrEMBL
Match: A0A210QLH3 (Uncharacterized protein OS=Mizuhopecten yessoensis OX=6573 GN=KP79_PYT06340 PE=4 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 1.066e-7
Identity = 37/144 (25.69%), Postives = 82/144 (56.94%), Query Frame = 1 
Query:  355 EYKRLKQHIDTLAKDYSCLQTSNNWLSRYRMLKSMIKRCVMHLKVGEDTQISA-GVAKEIN-------------RKCEEKYEKLNSETLIEEKTMLKNQIEMHQARTAILREVFSDLDTQYTASKKYVALTRYQMLNALIKDLL 744
            E+K+LKQ ++ LA+DY   +  +  L RY  +K MIKR ++HL++ +D + S+ G++  I              R+ + +   ++ + + +E   L+ Q++  +   +++R++ + LD  Y +SK +  + RY+++  +IK+++
Sbjct:   55 EHKKLKQVVEQLARDYEESKYFDP-LRRYEKMKGMIKRTILHLRLNQDDKGSSCGISGLIQSCRDYAHQVEAGKRREQHQSANMSKQEIAQENESLRTQVKDMRRECSVIRDIINQLDQNYESSKHFSLIQRYRVMKLMIKNVI 197
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BLAST of SMED30008062 vs. TrEMBL
Match: K1RK99 (Uncharacterized protein OS=Crassostrea gigas OX=29159 GN=CGI_10028224 PE=4 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 4.031e-6
Identity = 39/148 (26.35%), Postives = 76/148 (51.35%), Query Frame = 1 
Query:  355 EYKRLKQHIDTLAKDYSCLQTSNNW--LSRYRMLKSMIKRCVMHLKVGEDTQISAGVAKEINRKCEEKYEKLN----------------SETLIEEKTMLKNQIEMHQARTAILREVFSDLDTQYTASKKYVALTRYQMLNALIKDLL 744
            EYK ++Q +DTL +DY   + S ++  L RY +LK MIKR ++H K+ ED ++   V+    R     Y++L+                 E +  E   L++QI   + R +++ +  + L+++Y  SK +    RY ++  +++ ++
Sbjct:   52 EYKHVRQVVDTLQQDY---ERSKDFDPLRRYGLLKGMIKRTILHFKLNED-KLPGSVSMTGIRSLANSYKELSYTMELTRRKADLDDMCVEEIESEVEQLRHQINGLRGRCSLVTDTVTQLESKYELSKNFAPPKRYDLMKKMVQKVV 195
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BLAST of SMED30008062 vs. Planmine SMEST
Match: SMESG000023281.1 (SMESG000023281.1)

HSP 1 Score: 449.899 bits (1156), Expect = 7.967e-162
Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 1 
Query:   67 MLDIPNSSRNDLNSLDPKRYSENLGRSQSVRRTSNISNADGGXXXXXXXXXXXXXXXNENGGLRRMSKFLHESLLGGENVKQEFIKLYDFQELTVMEYKRLKQHIDTLAKDYSCLQTSNNWLSRYRMLKSMIKRCVMHLKVGEDTQISAGVAKEINRKCEEKYEKLNSETLIEEKTMLKNQIEMHQARTAILREVFSDLDTQYTASKKYVALTRYQMLNALIKDLLARPNVKELIS 774
            MLDIPNSSRNDLNSLDPKRYSENLGRSQSVRRTSNISNADGGLLRSSSLRLPSSSKSNENGGLRRMSKFLHESLLGGENVKQEFIKLYDFQELTVMEYKRLKQHIDTLAKDYSCLQTSNNWLSRYRMLKSMIKRCVMHLKVGEDTQISAGVAKEINRKCEEKYEKLNSETLIEEKTMLKNQIEMHQARTAILREVFSDLDTQYTASKKYVALTRYQMLNALIKDLLARPNVKELIS
Sbjct:    1 MLDIPNSSRNDLNSLDPKRYSENLGRSQSVRRTSNISNADGGLLRSSSLRLPSSSKSNENGGLRRMSKFLHESLLGGENVKQEFIKLYDFQELTVMEYKRLKQHIDTLAKDYSCLQTSNNWLSRYRMLKSMIKRCVMHLKVGEDTQISAGVAKEINRKCEEKYEKLNSETLIEEKTMLKNQIEMHQARTAILREVFSDLDTQYTASKKYVALTRYQMLNALIKDLLARPNVKELIS 236
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BLAST of SMED30008062 vs. Planmine SMEST
Match: SMESG000069423.1 (SMESG000069423.1)

HSP 1 Score: 118.627 bits (296), Expect = 9.242e-32
Identity = 71/180 (39.44%), Postives = 103/180 (57.22%), Query Frame = 1 
Query:  253 LRRMSKFLH-----ESLLGGENVKQEFIKLYDFQELTVMEYKRLKQHIDTLAKDYSCLQTSNNWLSRYRMLKSMIKRCVMHLKVGEDTQISAGVAK--EINRKCEEKYEKLNSETLIEEKTMLKNQIEMHQARTAILREVFSDLDTQYTASKKYVALTRYQMLNALIKDLLARPNVKELI 771
            LR+MS+F H     E+LL     K+ FI++Y+  +    EYKRLK +++ L  DY  +      ++RY  LK MIKR +MHLKV       +   K  E+ RK EE+YE L S+ + +EK  +K  IE  Q R  IL    +DL+  Y  +K Y   TRYQM+ A++KDL+ +P + E+I
Sbjct:   67 LRKMSQFFHVDKISETLLKDPE-KEAFIQMYEQHDDLQTEYKRLKSYVEHLKDDYE-MSRGFEAMTRYNRLKVMIKRTIMHLKVSSVAGDCSNAIKIKELARKSEERYESLTSDEIDKEKQEIKENIEEFQQRIDILISAITDLEEHYNDAKTYFIWTRYQMMKAMVKDLIHKPTIVEII 244
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BLAST of SMED30008062 vs. Planmine SMEST
Match: SMESG000044339.1 (SMESG000044339.1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.878e-16
Identity = 55/171 (32.16%), Postives = 89/171 (52.05%), Query Frame = 1 
Query:  289 LGGENVKQEFIKLYDFQELTVMEYKRLKQHIDTLAKDYSCLQTSNNWLSRYRMLKSMIKRCVMHLKVGEDTQ-----------ISA------GVAKEINR-----KCEEKYEKLNSETLIEEKTMLKNQIEMHQARTAILREVFSDLDTQYTASKKYVALTRYQMLNALIK 735
            L  + V++++ +L +  + +  EYKRL+  +D L  DYS    S + + RY  LK MIKR V+HLK+   T            ISA      G    + R     K EE+ + L SE +I E   ++  I+ ++ +TA++ +  ++L+ +YTASK Y  + RY  L  +IK
Sbjct:   24 LMKDPVREDYQRLAEEYDKSCEEYKRLRSFVDILEADYSS-SKSLDVIRRYLSLKGMIKRTVLHLKLPHITSGKSDLNPNAVGISAMGNLLQGTRTFVKRSEQAKKWEERLQTLKSEEIIAENRKMEESIKDYKRKTAMITDAINNLEVEYTASKIYFPIRRYPALKQIIK 193
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BLAST of SMED30008062 vs. Planmine SMEST
Match: SMESG000032554.1 (SMESG000032554.1)

HSP 1 Score: 54.299 bits (129), Expect = 1.176e-8
Identity = 40/148 (27.03%), Postives = 75/148 (50.68%), Query Frame = 1 
Query:  355 EYKRLKQHIDTLAKDYSCLQTSNNWLSRYRMLKSMIKRCVMHLK-----------------VGEDTQISAGVAK--EINRKCEEKYEKLNSETLIEEKTMLKNQIEMHQARTAILREVFSDLDTQYTASKKYVALTRYQMLNALIKDL 741
            + KR++ +I+TL ++Y+  +  + +  RY+ LK MIKR  MHLK                 +G   Q +  + K  E  RK EE+ +K+ S+ LI E   +++ ++  +++ A + +    ++  Y  S+      RYQ L  +IK++
Sbjct:   40 DLKRIQGYIETLEEEYNQCKMMDVF-RRYQKLKGMIKRITMHLKMPGMTACAGAKPLGISAIGNLAQGTKDMVKRNEQARKREEQIKKMTSDELIRETKRIEDSLKNKKSQVAFISDAIRKMEIHYEESRNMNPFLRYQALKKIIKNV 186
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BLAST of SMED30008062 vs. Planmine SMEST
Match: SMESG000080507.1 (SMESG000080507.1)

HSP 1 Score: 46.595 bits (109), Expect = 6.394e-6
Identity = 42/173 (24.28%), Postives = 84/173 (48.55%), Query Frame = 1 
Query:  247 GGLRRMSKFLH-----ESLLGGENVKQEFIKLYDFQELTVMEYKRLKQHIDTLAKDYSCLQTSNNWLSRYRMLKSMIKRCVMHLKVGEDTQ--ISAGVAKEINRKCEEKYEKLNSETLIEEKTMLKNQIEMHQARTAILREVFSDLDTQYTASKKYVALTRYQMLNALIKDLL 744
              +R+MS+F +     +S+   +N K+ F++L++ Q+   +E +R    ID L   Y   +     L+ Y   K+MI+  V HLK+   T    S    KE+  K ++ Y+KL+++  +E K  +   I + + + +        L+  Y   K++    +Y+++  +IK  +
Sbjct:   36 NKIRKMSQFFNIEKFSDSIWNDDNEKEIFLQLFEQQDNLTLENRRFHSFIDDLKIKYEN-EKQRYSLNCYFNYKNMIQCAVNHLKISHVTGEICSNARLKEVVSKADKIYKKLSNQERLEYKNEMVIDINLLKQQISKFVYAIEQLEKDYENIKQFSFFRKYKLMKMIIKKCI 207
The following BLAST results are available for this feature:
BLAST of SMED30008062 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008062 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008062 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008062 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008062 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008062 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008062 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008062 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A1S3IZ141.434e-1229.52uncharacterized protein LOC106168312 OS=Lingula un... [more]
R7V1A03.200e-1230.37Uncharacterized protein OS=Capitella teleta OX=283... [more]
V4A7283.376e-1027.88Uncharacterized protein OS=Lottia gigantea OX=2251... [more]
A0A210QLH31.066e-725.69Uncharacterized protein OS=Mizuhopecten yessoensis... [more]
K1RK994.031e-626.35Uncharacterized protein OS=Crassostrea gigas OX=29... [more]
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BLAST of SMED30008062 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008062 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008062 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008062 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008062 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008062 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000023281.17.967e-162100.00SMESG000023281.1[more]
SMESG000069423.19.242e-3239.44SMESG000069423.1[more]
SMESG000044339.17.878e-1632.16SMESG000044339.1[more]
SMESG000032554.11.176e-827.03SMESG000032554.1[more]
SMESG000080507.16.394e-624.28SMESG000080507.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30008062 ID=SMED30008062|Name=SMED30008062|organism=Schmidtea mediterranea sexual|type=transcript|length=888bp
ATTTCCCATTATTAACTGAAACTCTCCTATTTGAACTTATCACATTTTTT
ATTATCATTTGTCAAAATGCTTGATATTCCAAATTCTTCAAGAAATGATC
TCAATTCACTCGATCCGAAACGCTATTCAGAAAATCTCGGTAGATCACAA
AGTGTTCGACGGACATCAAACATTTCAAATGCAGATGGAGGCCTTCTGAG
AAGTTCTTCGTTGCGATTGCCTTCCAGTTCTAAATCGAATGAAAACGGAG
GACTGAGACGAATGTCGAAGTTTTTACACGAAAGTTTGCTTGGAGGAGAA
AATGTCAAGCAAGAATTCATTAAACTTTATGACTTTCAAGAATTGACTGT
AATGGAATATAAACGACTAAAACAGCATATTGATACGTTAGCCAAAGACT
ACAGCTGCTTACAAACATCAAACAACTGGTTGTCAAGATATAGAATGTTG
AAATCCATGATCAAAAGATGTGTAATGCATTTGAAGGTTGGAGAAGACAC
CCAAATTAGTGCAGGAGTAGCGAAGGAAATAAATAGAAAATGTGAAGAAA
AATATGAAAAACTGAACTCAGAAACTCTAATTGAAGAGAAAACTATGCTC
AAAAACCAAATTGAAATGCATCAAGCAAGAACCGCGATTTTGCGGGAGGT
ATTCAGCGATCTCGATACTCAATACACAGCAAGTAAAAAGTATGTCGCAT
TGACTCGATATCAAATGTTGAATGCTTTGATCAAAGATCTACTCGCCCGC
CCGAATGTGAAAGAGTTGATCAGTTAATACGATCAGATTTGTAATGATAT
GTAATCAAACTTTCATTTTGTTCTAGATGTTCTGGTAAATGTTTCAAACT
AACTATTTTTGTTTTAATAATACATATATCAAAAATGG
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protein sequence of SMED30008062-orf-1

>SMED30008062-orf-1 ID=SMED30008062-orf-1|Name=SMED30008062-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=237bp
MLDIPNSSRNDLNSLDPKRYSENLGRSQSVRRTSNISNADGGLLRSSSLR
LPSSSKSNENGGLRRMSKFLHESLLGGENVKQEFIKLYDFQELTVMEYKR
LKQHIDTLAKDYSCLQTSNNWLSRYRMLKSMIKRCVMHLKVGEDTQISAG
VAKEINRKCEEKYEKLNSETLIEEKTMLKNQIEMHQARTAILREVFSDLD
TQYTASKKYVALTRYQMLNALIKDLLARPNVKELIS*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000418head
PLANA:0000484secretory system
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 168..188
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..37
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..37
NoneNo IPR availablePANTHERPTHR21010FAMILY NOT NAMEDcoord: 140..233