SMED30008052

Overview
NameSMED30008052
Smed IDSMED30008052
Length (bp)1922
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30008052 (SMED30008052) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30008052 (SMED30008052) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30008052 (SMED30008052) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30008052 (SMED30008052) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30008052

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 18

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
intestinal phagocyteSMED30008052SMESG000065858.1 Contig5177GPL15192PMID:23079596
Forsthoefel et al., 2012
FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30008052SMESG000075212.1 SMESG000074907.1 Contig5177GPL15192PMID:23079596
Forsthoefel et al., 2012
FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
gutSMED30008052SMESG000074907.1 Contig4797GPL15192PMID:23079596
Forsthoefel et al., 2012
whole organism asexual adult colorimetric in situ hybridization evidence
intestinal phagocyteSMED30008052SMESG000074907.1 Contig4797GPL15192PMID:23079596
Forsthoefel et al., 2012
FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
central nervous systemSMED30008052SMESG000074907.1 Contig4797GPL15192PMID:23079596
Forsthoefel et al., 2012
whole organism asexual adult colorimetric in situ hybridization evidence
protonephridiaSMED30008052SMESG000075212.1 SMESG000075211.1 SMESG000074910.1 SMESG000074908.1 SMESG000074907.1 dd_Smed_v4_1061_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30008052SMESG000075212.1 SMESG000075211.1 SMESG000074910.1 SMESG000074908.1 SMESG000074907.1 dd_Smed_v4_1061_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30008052SMESG000075212.1 SMESG000075211.1 SMESG000074910.1 SMESG000074908.1 SMESG000074907.1 dd_Smed_v4_1061_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30008052SMESG000075212.1 SMESG000075211.1 SMESG000074910.1 SMESG000074908.1 SMESG000074907.1 dd_Smed_v4_1061_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30008052SMESG000075212.1 SMESG000075211.1 SMESG000074910.1 SMESG000074908.1 SMESG000074907.1 dd_Smed_v4_1061_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neuronSMED30008052SMESG000075212.1 SMESG000075211.1 SMESG000074910.1 SMESG000074908.1 SMESG000074907.1 dd_Smed_v4_1061_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult colorimetric in situ hybridization evidence
parenchymal cellSMED30008052SMESG000075212.1 SMESG000075211.1 SMESG000074910.1 SMESG000074908.1 SMESG000074907.1 dd_Smed_v4_1061_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30008052SMESG000075212.1 SMESG000075211.1 SMESG000074910.1 SMESG000074908.1 SMESG000074907.1 dd_Smed_v4_1061_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30008052SMESG000075212.1 SMESG000075211.1 SMESG000074910.1 SMESG000074908.1 SMESG000074907.1 Contig37172uc_Smed_v2PMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30008052SMESG000075212.1 SMESG000075211.1 SMESG000074910.1 SMESG000074908.1 SMESG000074907.1 Contig37172newmark_estsPMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
neuronSMED30008052SMESG000075212.1 SMESG000074907.1 SMESG000075211.1 SMESG000074910.1 SMESG000074908.1 dd_Smed_v6_1061_0dd_Smed_v6PMID:29674432
Plass et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cholinergic neuronSMED30008052SMESG000075212.1 SMESG000074907.1 SMESG000075211.1 SMESG000074910.1 SMESG000074908.1 dd_Smed_v6_1061_0dd_Smed_v6PMID:29674432
Plass et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30008052SMESG000075212.1 SMESG000075211.1 SMESG000074910.1 SMESG000074908.1 SMESG000074907.1 dd_Smed_v4_1061_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017
whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of SMED30008052 vs. Planmine SMEST
Match: SMESG000075212.1 (SMESG000075212.1)

HSP 1 Score: 628.246 bits (1619), Expect = 0.000e+0
Identity = 389/436 (89.22%), Postives = 395/436 (90.60%), Query Frame = 1
Query:  463 SMSKHAENLGQEIQSLNQNLEKKEQIIDSKDNVIQKQKNELKTCEDKIKKLDETIRSLQKNPGNITSANVLSRSDSARSVNELSESENERYKSESQFLNEIYKRSGKKFDNFKECIDYIKNPIDSSSQIRGDLNREWCFARSGNNEMVKELRKEIEILEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKKSKDTKTKAQVKELRNIIEDLKGEVEAKCDEIESKNNKLKEMEMESXXXXXXXXXXXXXXXXXRVKNEIIEETVKNQAKEAEKIVQEKKTELDKKQEAMETMKTKINEKNVKIKEYENEIQDHKEKYQELETRANNQNRHHEGKIKILEDQIHELQVKKYRNNENPPKPVDERSVKADMNTNNEFPGWWDRHKGPIEPGKKNSILNSRTEVACPNCHTLYPQAEIETHIEVCIENEH 1770
            S+SKHAENLGQEIQSLNQNLEKKEQIIDSKDNVIQKQKNELKTCEDKIKKLDETIRSLQKNPGNITSANVLSRSDS +SVNELSESENERYKSESQFLNEIYKRSGKKFDNFKECIDYIKNPIDSSSQIRGDLNREWCFARSGNNEMVKELRKEIEILEDEKYAAETKAKSETKKLKKELKDKNEENLELIEEVSELRKKSKDTKTKAQVKELRNIIEDLKGEVEAKCDEIESKNNKLKEMEMESKKQLKKIEELQKEKNNLRVKNEIIEETVKNQAKEAEKIVQEKKTELD+KQEAMETMK KI+EKN+KIKEYENEIQDHKEKYQELETRANNQNRHHEGKIKILEDQIHELQV   RN EN PK V  +S K DMNT                             VACPNCHTLYPQAEIETHIEVCIENEH
Sbjct:    9 SVSKHAENLGQEIQSLNQNLEKKEQIIDSKDNVIQKQKNELKTCEDKIKKLDETIRSLQKNPGNITSANVLSRSDSGKSVNELSESENERYKSESQFLNEIYKRSGKKFDNFKECIDYIKNPIDSSSQIRGDLNREWCFARSGNNEMVKELRKEIEILEDEKYAAETKAKSETKKLKKELKDKNEENLELIEEVSELRKKSKDTKTKAQVKELRNIIEDLKGEVEAKCDEIESKNNKLKEMEMESKKQLKKIEELQKEKNNLRVKNEIIEETVKNQAKEAEKIVQEKKTELDRKQEAMETMKIKIDEKNLKIKEYENEIQDHKEKYQELETRANNQNRHHEGKIKILEDQIHELQV---RNIENQPKSVGGKSAKPDMNT-----------------------------VACPNCHTLYPQAEIETHIEVCIENEH 412          
BLAST of SMED30008052 vs. Planmine SMEST
Match: SMESG000075212.1 (SMESG000075212.1)

HSP 1 Score: 611.298 bits (1575), Expect = 0.000e+0
Identity = 383/436 (87.84%), Postives = 389/436 (89.22%), Query Frame = 1
Query:  463 SMSKHAENLGQEIQSLNQNLEKKEQIIDSKDNVIQKQKNELKTCEDKIKKLDETIRSLQKNPGNITSANVLSRSDSARSVNELSESENERYKSESQFLNEIYKRSGKKFDNFKECIDYIKNPIDSSSQIRGDLNREWCFARSGNNEMVKELRKEIEILEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKKSKDTKTKAQVKELRNIIEDLKGEVEAKCDEIESKNNKLKEMEMESXXXXXXXXXXXXXXXXXRVKNEIIEETVKNQAKEAEKIVQEKKTELDKKQEAMETMKTKINEKNVKIKEYENEIQDHKEKYQELETRANNQNRHHEGKIKILEDQIHELQVKKYRNNENPPKPVDERSVKADMNTNNEFPGWWDRHKGPIEPGKKNSILNSRTEVACPNCHTLYPQAEIETHIEVCIENEH 1770
            S+SKHAENLGQEIQSLNQNLEKKEQIIDSKDNVIQKQKNELKTCEDKIKKLDETIRSLQKNPGNITSANVLSRSDS +SVNE      ERYKSESQFLNEIYKRSGKKFDNFKECIDYIKNPIDSSSQIRGDLNREWCFARSGNNEMVKELRKEIEILEDEKYAAETKAKSETKKLKKELKDKNEENLELIEEVSELRKKSKDTKTKAQVKELRNIIEDLKGEVEAKCDEIESKNNKLKEMEMESKKQLKKIEELQKEKNNLRVKNEIIEETVKNQAKEAEKIVQEKKTELD+KQEAMETMK KI+EKN+KIKEYENEIQDHKEKYQELETRANNQNRHHEGKIKILEDQIHELQV   RN EN PK V  +S K DMNT                             VACPNCHTLYPQAEIETHIEVCIENEH
Sbjct:    9 SVSKHAENLGQEIQSLNQNLEKKEQIIDSKDNVIQKQKNELKTCEDKIKKLDETIRSLQKNPGNITSANVLSRSDSGKSVNE------ERYKSESQFLNEIYKRSGKKFDNFKECIDYIKNPIDSSSQIRGDLNREWCFARSGNNEMVKELRKEIEILEDEKYAAETKAKSETKKLKKELKDKNEENLELIEEVSELRKKSKDTKTKAQVKELRNIIEDLKGEVEAKCDEIESKNNKLKEMEMESKKQLKKIEELQKEKNNLRVKNEIIEETVKNQAKEAEKIVQEKKTELDRKQEAMETMKIKIDEKNLKIKEYENEIQDHKEKYQELETRANNQNRHHEGKIKILEDQIHELQV---RNIENQPKSVGGKSAKPDMNT-----------------------------VACPNCHTLYPQAEIETHIEVCIENEH 406          
BLAST of SMED30008052 vs. Planmine SMEST
Match: SMESG000075212.1 (SMESG000075212.1)

HSP 1 Score: 574.318 bits (1479), Expect = 0.000e+0
Identity = 368/436 (84.40%), Postives = 374/436 (85.78%), Query Frame = 1
Query:  463 SMSKHAENLGQEIQSLNQNLEKKEQIIDSKDNVIQKQKNELKTCEDKIKKLDETIRSLQKNPGNITSANVLSRSDSARSVNELSESENERYKSESQFLNEIYKRSGKKFDNFKECIDYIKNPIDSSSQIRGDLNREWCFARSGNNEMVKELRKEIEILEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKKSKDTKTKAQVKELRNIIEDLKGEVEAKCDEIESKNNKLKEMEMESXXXXXXXXXXXXXXXXXRVKNEIIEETVKNQAKEAEKIVQEKKTELDKKQEAMETMKTKINEKNVKIKEYENEIQDHKEKYQELETRANNQNRHHEGKIKILEDQIHELQVKKYRNNENPPKPVDERSVKADMNTNNEFPGWWDRHKGPIEPGKKNSILNSRTEVACPNCHTLYPQAEIETHIEVCIENEH 1770
            S+SKHAENLGQEIQSLNQNLEKKEQI               KTCEDKIKKLDETIRSLQKNPGNITSANVLSRSDS +SVNE      ERYKSESQFLNEIYKRSGKKFDNFKECIDYIKNPIDSSSQIRGDLNREWCFARSGNNEMVKELRKEIEILEDEKYAAETKAKSETKKLKKELKDKNEENLELIEEVSELRKKSKDTKTKAQVKELRNIIEDLKGEVEAKCDEIESKNNKLKEMEMESKKQLKKIEELQKEKNNLRVKNEIIEETVKNQAKEAEKIVQEKKTELD+KQEAMETMK KI+EKN+KIKEYENEIQDHKEKYQELETRANNQNRHHEGKIKILEDQIHELQV   RN EN PK V  +S K DMNT                             VACPNCHTLYPQAEIETHIEVCIENEH
Sbjct:    9 SVSKHAENLGQEIQSLNQNLEKKEQI---------------KTCEDKIKKLDETIRSLQKNPGNITSANVLSRSDSGKSVNE------ERYKSESQFLNEIYKRSGKKFDNFKECIDYIKNPIDSSSQIRGDLNREWCFARSGNNEMVKELRKEIEILEDEKYAAETKAKSETKKLKKELKDKNEENLELIEEVSELRKKSKDTKTKAQVKELRNIIEDLKGEVEAKCDEIESKNNKLKEMEMESKKQLKKIEELQKEKNNLRVKNEIIEETVKNQAKEAEKIVQEKKTELDRKQEAMETMKIKIDEKNLKIKEYENEIQDHKEKYQELETRANNQNRHHEGKIKILEDQIHELQV---RNIENQPKSVGGKSAKPDMNT-----------------------------VACPNCHTLYPQAEIETHIEVCIENEH 391          
BLAST of SMED30008052 vs. Planmine SMEST
Match: SMESG000075212.1 (SMESG000075212.1)

HSP 1 Score: 549.28 bits (1414), Expect = 0.000e+0
Identity = 358/436 (82.11%), Postives = 365/436 (83.72%), Query Frame = 1
Query:  463 SMSKHAENLGQEIQSLNQNLEKKEQIIDSKDNVIQKQKNELKTCEDKIKKLDETIRSLQKNPGNITSANVLSRSDSARSVNELSESENERYKSESQFLNEIYKRSGKKFDNFKECIDYIKNPIDSSSQIRGDLNREWCFARSGNNEMVKELRKEIEILEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKKSKDTKTKAQVKELRNIIEDLKGEVEAKCDEIESKNNKLKEMEMESXXXXXXXXXXXXXXXXXRVKNEIIEETVKNQAKEAEKIVQEKKTELDKKQEAMETMKTKINEKNVKIKEYENEIQDHKEKYQELETRANNQNRHHEGKIKILEDQIHELQVKKYRNNENPPKPVDERSVKADMNTNNEFPGWWDRHKGPIEPGKKNSILNSRTEVACPNCHTLYPQAEIETHIEVCIENEH 1770
            S+SKHAENLGQEIQSLNQNLEKKEQIIDSKDNVIQKQKNELKTCEDKIKKLDETIRSLQKNPGNITSANVLSRSDS +SVNE      ERYKSESQFLNEIYKRSGKKFDNFKECIDYIKNPIDSSSQIRGDLNREWCFARSGNNEMVKELRKEIEILEDEKYAAETKAKSETKKLKKELKDKNEENLELIEEVSELRKKSKDTK                        +IESKNNKLKEMEMESKKQLKKIEELQKEKNNLRVKNEIIEETVKNQAKEAEKIVQEKKTELD+KQEAMETMK KI+EKN+KIKEYENEIQDHKEKYQELETRANNQNRHHEGKIKILEDQIHELQV   RN EN PK V  +S K DMNT                             VACPNCHTLYPQAEIETHIEVCIENEH
Sbjct:    9 SVSKHAENLGQEIQSLNQNLEKKEQIIDSKDNVIQKQKNELKTCEDKIKKLDETIRSLQKNPGNITSANVLSRSDSGKSVNE------ERYKSESQFLNEIYKRSGKKFDNFKECIDYIKNPIDSSSQIRGDLNREWCFARSGNNEMVKELRKEIEILEDEKYAAETKAKSETKKLKKELKDKNEENLELIEEVSELRKKSKDTK------------------------KIESKNNKLKEMEMESKKQLKKIEELQKEKNNLRVKNEIIEETVKNQAKEAEKIVQEKKTELDRKQEAMETMKIKIDEKNLKIKEYENEIQDHKEKYQELETRANNQNRHHEGKIKILEDQIHELQV---RNIENQPKSVGGKSAKPDMNT-----------------------------VACPNCHTLYPQAEIETHIEVCIENEH 382          
BLAST of SMED30008052 vs. Planmine SMEST
Match: SMESG000075212.1 (SMESG000075212.1)

HSP 1 Score: 522.702 bits (1345), Expect = 0.000e+0
Identity = 334/436 (76.61%), Postives = 342/436 (78.44%), Query Frame = 1
Query:  463 SMSKHAENLGQEIQSLNQNLEKKEQIIDSKDNVIQKQKNELKTCEDKIKKLDETIRSLQKNPGNITSANVLSRSDSARSVNELSESENERYKSESQFLNEIYKRSGKKFDNFKECIDYIKNPIDSSSQIRGDLNREWCFARSGNNEMVKELRKEIEILEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKKSKDTKTKAQVKELRNIIEDLKGEVEAKCDEIESKNNKLKEMEMESXXXXXXXXXXXXXXXXXRVKNEIIEETVKNQAKEAEKIVQEKKTELDKKQEAMETMKTKINEKNVKIKEYENEIQDHKEKYQELETRANNQNRHHEGKIKILEDQIHELQVKKYRNNENPPKPVDERSVKADMNTNNEFPGWWDRHKGPIEPGKKNSILNSRTEVACPNCHTLYPQAEIETHIEVCIENEH 1770
            S+SKHAENLGQEIQSLNQNLEKKEQIIDSKDNVIQKQKNELKTCEDKIKKLDETIRSLQKNPGNITSANVLSRSDS +SVNE      ERYKSESQFLNEIYKRSGKKFDNFKECIDYIKNPIDSSSQIRGDLNREWCFARSGNNEMVKELRKEIEILEDEKYAAETKAKSETKKLKKELKDKNEENLELIEEVSELRKKSKDTK           IE+L+ E          KNN                         LRVKNEIIEETVKNQAKEAEKIVQEKKTELD+KQEAMETMK KI+EKN+KIKEYENEIQDHKEKYQELETRANNQNRHHEGKIKILEDQIHELQV   RN EN PK V  +S K DMNT                             VACPNCHTLYPQAEIETHIEVCIENEH
Sbjct:    9 SVSKHAENLGQEIQSLNQNLEKKEQIIDSKDNVIQKQKNELKTCEDKIKKLDETIRSLQKNPGNITSANVLSRSDSGKSVNE------ERYKSESQFLNEIYKRSGKKFDNFKECIDYIKNPIDSSSQIRGDLNREWCFARSGNNEMVKELRKEIEILEDEKYAAETKAKSETKKLKKELKDKNEENLELIEEVSELRKKSKDTK-----------IEELQKE----------KNN-------------------------LRVKNEIIEETVKNQAKEAEKIVQEKKTELDRKQEAMETMKIKIDEKNLKIKEYENEIQDHKEKYQELETRANNQNRHHEGKIKILEDQIHELQV---RNIENQPKSVGGKSAKPDMNT-----------------------------VACPNCHTLYPQAEIETHIEVCIENEH 360          
The following BLAST results are available for this feature:
BLAST of SMED30008052 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008052 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008052 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008052 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008052 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008052 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008052 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008052 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008052 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008052 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008052 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008052 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008052 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30008052 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000075212.10.000e+089.22SMESG000075212.1[more]
SMESG000075212.10.000e+087.84SMESG000075212.1[more]
SMESG000075212.10.000e+084.40SMESG000075212.1[more]
SMESG000075212.10.000e+082.11SMESG000075212.1[more]
SMESG000075212.10.000e+076.61SMESG000075212.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30008052 ID=SMED30008052|Name=SMED30008052|organism=Schmidtea mediterranea sexual|type=transcript|length=1922bp
ATGGAATGCTTTCTTAAACAACAAATAAGTGGTTTTTAAAATTGGATCCT
AATTTTAAAAACCACTTATTTGTTGTATAAGAAAGCATTCCATTGATCTA
TTTTTTAATTCCCCATTTATATATAATATTATTTATTTCATTAAAAAACC
ATGAGTGATTCAGATGAACAGGAGGCTGTTATTCAAAAATTTAAAAAAGA
AAAAAAAACTTTAGAGAAAAAATATAAAGATCGCATTTCTGAATTGGAAG
AGTCGATTGAGGAAAAAGATGATACAATTAAGGCTTTAAACCGTCGACTG
GAAAGAATGAGAAAAATGCGATCAAGTAGTTCAGACATTGACACAATGAA
TGATGATTCATTTGACAGAGATTTGGAAAAGGTTAAAGGAGATTTAAAAT
CTGTAACAGAAGAATTAAATGAGAAAACGGCAATTATTTCCAAGTTTGAA
ACAGAAATTAAATCTATGTCTAAGCACGCAGAAAATCTGGGTCAGGAAAT
TCAAAGTTTAAATCAAAATCTTGAAAAAAAGGAGCAGATTATTGATTCGA
AAGATAATGTAATTCAAAAACAGAAAAATGAACTTAAGACATGCGAGGAT
AAAATAAAAAAACTGGATGAAACGATTCGATCGTTGCAAAAAAATCCTGG
TAACATAACAAGCGCGAATGTCCTATCACGATCAGATTCAGCGAGATCTG
TTAATGAGTTATCAGAATCCGAAAACGAAAGATATAAATCAGAATCCCAA
TTCTTGAATGAGATTTACAAACGAAGTGGAAAGAAATTCGACAATTTTAA
AGAGTGCATTGATTATATTAAAAATCCAATCGACTCTTCGAGTCAAATTA
GGGGAGATCTCAATAGAGAGTGGTGTTTTGCAAGAAGTGGTAATAATGAA
ATGGTTAAAGAACTTAGAAAAGAAATTGAAATTTTGGAGGATGAAAAATA
TGCGGCAGAAACGAAAGCAAAAAGCGAAACGAAGAAACTAAAGAAAGAAT
TGAAAGATAAGAATGAAGAAAATCTGGAGTTGATTGAAGAAGTTTCAGAA
TTGCGAAAGAAATCAAAAGATACCAAGACTAAGGCTCAAGTAAAAGAATT
GCGAAATATAATAGAAGATTTAAAAGGCGAGGTAGAGGCCAAATGCGATG
AAATAGAATCCAAAAACAATAAATTGAAAGAAATGGAGATGGAAAGTAAA
AAGCAGCTCAAGAAAATTGAAGAATTACAAAAGGAAAAAAATAATTTAAG
AGTAAAAAATGAAATAATTGAAGAAACTGTAAAAAATCAAGCGAAAGAAG
CTGAGAAAATTGTTCAAGAGAAAAAAACTGAATTAGATAAAAAACAGGAG
GCCATGGAAACTATGAAAACTAAGATAAATGAAAAAAATGTGAAAATAAA
GGAATATGAAAATGAAATCCAAGACCATAAAGAGAAGTACCAAGAACTAG
AGACAAGAGCGAACAATCAAAATAGACATCATGAGGGAAAGATTAAGATA
TTGGAAGATCAAATACATGAATTGCAAGTAAAGAAATATAGAAATAACGA
AAATCCACCAAAACCAGTAGATGAAAGATCAGTAAAAGCTGACATGAATA
CGAACAACGAATTCCCTGGTTGGTGGGATCGGCACAAAGGACCAATTGAA
CCGGGAAAAAAAAATAGTATTCTCAACAGCAGAACCGAAGTTGCCTGTCC
TAATTGTCATACATTATATCCACAAGCGGAAATTGAGACCCACATTGAAG
TCTGTATTGAAAATGAACACTAGTCTAATATGTGTGTTTACGCGTGCGTG
CACTTGAGAAATTTGTTTAATTGAGTAATAAATAATACGGAAAGTTCCAA
ATTGTTTTGTAGTTTTTTTAAATCTCATAATAATATTTAATATGTAAACT
GGTAAGTTATGAAACTGAAAAT
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protein sequence of SMED30008052-orf-1

>SMED30008052-orf-1 ID=SMED30008052-orf-1|Name=SMED30008052-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=541bp
MSDSDEQEAVIQKFKKEKKTLEKKYKDRISELEESIEEKDDTIKALNRRL
ERMRKMRSSSSDIDTMNDDSFDRDLEKVKGDLKSVTEELNEKTAIISKFE
TEIKSMSKHAENLGQEIQSLNQNLEKKEQIIDSKDNVIQKQKNELKTCED
KIKKLDETIRSLQKNPGNITSANVLSRSDSARSVNELSESENERYKSESQ
FLNEIYKRSGKKFDNFKECIDYIKNPIDSSSQIRGDLNREWCFARSGNNE
MVKELRKEIEILEDEKYAAETKAKSETKKLKKELKDKNEENLELIEEVSE
LRKKSKDTKTKAQVKELRNIIEDLKGEVEAKCDEIESKNNKLKEMEMESK
KQLKKIEELQKEKNNLRVKNEIIEETVKNQAKEAEKIVQEKKTELDKKQE
AMETMKTKINEKNVKIKEYENEIQDHKEKYQELETRANNQNRHHEGKIKI
LEDQIHELQVKKYRNNENPPKPVDERSVKADMNTNNEFPGWWDRHKGPIE
PGKKNSILNSRTEVACPNCHTLYPQAEIETHIEVCIENEH*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000020protonephridia
PLANA:0000026gut
PLANA:0000034epidermis
PLANA:0000070intestinal phagocyte
PLANA:0000099neuron
PLANA:0000103central nervous system
PLANA:0000463cholinergic neuron
Vocabulary: INTERPRO
TermDefinition
IPR005798Cyt_b/b6_C
Vocabulary: molecular function
TermDefinition
GO:0016491oxidoreductase activity
GO:0009055electron carrier activity
Vocabulary: cellular component
TermDefinition
GO:0016020membrane