Usp domain-containing protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30008017 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 7
Homology
BLAST of Usp domain-containing protein vs. UniProt/SwissProt
Match: sp|A0QZA1|Y3950_MYCS2 (Universal stress protein MSMEG_3950/MSMEI_3859 OS=Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) OX=246196 GN=MSMEG_3950 PE=1 SV=1) HSP 1 Score: 49.6766 bits (117), Expect = 5.167e-6 Identity = 38/151 (25.17%), Postives = 73/151 (48.34%), Query Frame = 3 Query: 129 TERVIVIPIDNSEYTERTVDWYVENIMKPHDMVHMVNIVEPIYNSFSAGLAMEAAILTMSEDAETKIKKQIDKGKQLVKRYIHELRDKGGKGKGYIRVDSNVGEAIVKVCHEHKADIVLLSNRGEGIIRRTFLGSVSDYVLHHVDRPVIIV 581 TE I++ +D+S ++ V W + +++++ P+ S+ AG M + E+A + I++ +++V + E G + IR +S V ++ A +V++ NRG G + R LGS S +LH+ PV++V Sbjct: 6 TEYGILVGVDSSAESDAAVRWAAREASLHDAPITLMHVIAPVVVSWPAGPYMATVLECQEENA----RHAIEQAQKVVADCLGE--THGLTVQTEIRKES-VARTLIDASK--SAQMVVVGNRGMGALGRVLLGSTSTSLLHYASGPVVVV 147
BLAST of Usp domain-containing protein vs. TrEMBL
Match: A0A183WUS6 (Usp domain-containing protein OS=Trichobilharzia regenti OX=157069 GN=TRE_LOCUS15878 PE=4 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 1.409e-44 Identity = 73/155 (47.10%), Postives = 105/155 (67.74%), Query Frame = 3 Query: 123 DETERVIVIPIDNSEYTERTVDWYVENIMKPHDMVHMVNIVEPIYNSFSAGLAMEAAILTMSEDAETKIKKQIDKGKQLVKRYIHELRDKGGKGKGYIRVDSNVGEAIVKVCHEHKADIVLLSNRGEGIIRRTFLGSVSDYVLHHVDRPVIIVPP 587 +ET RV+++PID SE+ +R WY+EN+ +P+D+V +NIVEP+Y + + GL ME LT D ++ ID GK L K+YI E + G + ++ VD+ G A++K +H A+++++ NRG G IRRTFLGSVS+YVLHH PVIIVPP Sbjct: 5 NETPRVVLMPIDGSEHAQRAFQWYIENMKRPNDIVKFINIVEPVYATPAVGLTMETPPLT---DITKMMQDSIDNGKVLGKKYITEAKQCGVNCQAFLHVDTRPGAALLKSIEDHNANVIIMGNRGLGAIRRTFLGSVSEYVLHHAHIPVIIVPP 156
BLAST of Usp domain-containing protein vs. TrEMBL
Match: A0A183VJ70 (Usp domain-containing protein OS=Trichobilharzia regenti OX=157069 GN=TRE_LOCUS54 PE=4 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 2.562e-42 Identity = 70/157 (44.59%), Postives = 105/157 (66.88%), Query Frame = 3 Query: 117 GDDETERVIVIPIDNSEYTERTVDWYVENIMKPHDMVHMVNIVEPIYNSFSAGLAMEAAILTMSEDAETKIKKQIDKGKQLVKRYIHELRDKGGKGKGYIRVDSNVGEAIVKVCHEHKADIVLLSNRGEGIIRRTFLGSVSDYVLHHVDRPVIIVPP 587 GD + RVI+IPID SE+ ER WY++N+ + D + V+++EP+YN+ + GL ME+ + D +++ ID GK+L ++Y+HE + + ++ VD+ G ++VK +HKA ++L+ NRG G IRRTFLGSVSDY+LHH PVIIVPP Sbjct: 3 GDSGSGRVILIPIDGSEHCERAFRWYLDNMKRETDCIKFVHVIEPVYNTPAIGLTMESPPVP---DMTRVMEESIDAGKKLGQKYMHEAKAHKLTAQAFLHVDTKPGSSLVKAISDHKASVILMGNRGVGAIRRTFLGSVSDYILHHAHIPVIIVPP 156
BLAST of Usp domain-containing protein vs. TrEMBL
Match: A0A4S2MD90 (Usp domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_000850 PE=4 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 1.030e-41 Identity = 71/157 (45.22%), Postives = 101/157 (64.33%), Query Frame = 3 Query: 117 GDDETERVIVIPIDNSEYTERTVDWYVENIMKPHDMVHMVNIVEPIYNSFSAGLAMEAAILTMSEDAETKIKKQIDKGKQLVKRYIHELRDKGGKGKGYIRVDSNVGEAIVKVCHEHKADIVLLSNRGEGIIRRTFLGSVSDYVLHHVDRPVIIVPP 587 G DE R IV+P+D SE++ER WYV N+ +P+D V VNI+EP+Y S + G AME L D + + ++ GK++ + +H+ + + ++ VDS G AIVK ++ AD+V++ NRG G +RRTFLGSVSDYVLHH PV+IVPP Sbjct: 5 GVDEKPRTIVLPLDGSEHSERAFRWYVNNVRRPNDNVKFVNIIEPVYTSPTFGAAMELPPL---PDISRVMTETVESGKKVCQEKMHQAKAYNINSQAFLYVDSRPGPAIVKAVQDYDADLVIMGNRGIGTVRRTFLGSVSDYVLHHSHAPVLIVPP 158
BLAST of Usp domain-containing protein vs. TrEMBL
Match: A0A095AGD1 (Universal stress protein OS=Schistosoma haematobium OX=6185 GN=MS3_01105 PE=4 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 1.046e-41 Identity = 71/152 (46.71%), Postives = 102/152 (67.11%), Query Frame = 3 Query: 132 ERVIVIPIDNSEYTERTVDWYVENIMKPHDMVHMVNIVEPIYNSFSAGLAMEAAILTMSEDAETKIKKQIDKGKQLVKRYIHELRDKGGKGKGYIRVDSNVGEAIVKVCHEHKADIVLLSNRGEGIIRRTFLGSVSDYVLHHVDRPVIIVPP 587 +RV+++PID SE+ ER WY+ N+ +D+V VNIVEP+YN+ + GL ME LT D ++ IDKGK L K+YI E + + ++ VD+ G AI+K +H A+++++ +RG G++RRTFLGSVSDYVLHH PV+IVPP Sbjct: 8 QRVVLLPIDGSEHAERAFHWYLNNMKSSNDIVKFVNIVEPVYNTPAVGLTMETPPLT---DITKIMQDSIDKGKLLGKKYISEAKKYDINCQAFLHVDNRPGAAILKSIEDHNANLIIMGSRGLGVLRRTFLGSVSDYVLHHAHIPVVIVPP 156
BLAST of Usp domain-containing protein vs. TrEMBL
Match: A0A430QIP7 (Usp domain-containing protein OS=Schistosoma bovis OX=6184 GN=DC041_0011032 PE=4 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 1.046e-41 Identity = 71/152 (46.71%), Postives = 102/152 (67.11%), Query Frame = 3 Query: 132 ERVIVIPIDNSEYTERTVDWYVENIMKPHDMVHMVNIVEPIYNSFSAGLAMEAAILTMSEDAETKIKKQIDKGKQLVKRYIHELRDKGGKGKGYIRVDSNVGEAIVKVCHEHKADIVLLSNRGEGIIRRTFLGSVSDYVLHHVDRPVIIVPP 587 +RV+++PID SE+ ER WY+ N+ +D+V VNIVEP+YN+ + GL ME LT D ++ IDKGK L K+YI E + + ++ VD+ G AI+K +H A+++++ +RG G++RRTFLGSVSDYVLHH PV+IVPP Sbjct: 8 QRVVLLPIDGSEHAERAFHWYLNNMKSSNDIVKFVNIVEPVYNTPAVGLTMETPPLT---DITKIMQDSIDKGKLLGKKYISEAKKYDINCQAFLHVDNRPGAAILKSIEDHNANLIIMGSRGLGVLRRTFLGSVSDYVLHHAHIPVVIVPP 156
BLAST of Usp domain-containing protein vs. Ensembl Nematostella
Match: EDO33143 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7ST34]) HSP 1 Score: 91.2781 bits (225), Expect = 3.069e-23 Identity = 50/154 (32.47%), Postives = 86/154 (55.84%), Query Frame = 3 Query: 135 RVIVIPIDNSEYTERTVDWYVENIMKPHDMVHMVNIVE----PIYNSFSAGLAMEAAILTMSEDAETKIKKQIDKGKQLVKRYIHELRDKGGKGKGYIRVDSNVGEAIVKVCHEHKADIVLLSNRGEGIIRRTFLGSVSDYVLHHVDRPVIIVP 584 R I+IP+D SE++ER DWY E + P D V +V+ +E P+ + F + E+ +K+ ++ + +++ Y ++K + + V G+ I +V + A++++L RG+G+IRRT LGSVSDYV+HH PV ++P Sbjct: 4 RKILIPVDGSEHSERAFDWYAELLHSPGDEVLVVHCIELPPVPLEHQFPF-------VFAYYEEWSAMVKETREQHEAMLRSYEDICKEKKLHYEIMMVVGKPAGDVICQVARDVSANLIVLGTRGQGMIRRTILGSVSDYVVHHSHLPVAVIP 150
BLAST of Usp domain-containing protein vs. Ensembl Nematostella
Match: EDO44805 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RUT2]) HSP 1 Score: 87.8113 bits (216), Expect = 6.304e-22 Identity = 49/151 (32.45%), Postives = 83/151 (54.97%), Query Frame = 3 Query: 135 RVIVIPIDNSEYTERTVDWYVENIMKPHDMVHMVNIVEPIYNSFSAGLAMEAAILTMSEDAETKIKKQIDKGKQLVKRYIHELRDKGGKGKGYIRVDSNVGEAIVKVCHEHKADIVLLSNRGEGIIRRTFLGSVSDYVLHHVDRPVIIVPP 587 R IVIP+D S+++ER DWY + + +D V +V+ ++ ++A ED E +KK +D K +++ Y + +D K + + GE I ++ + AD +++ +RG G +RRT +GSVS++ LHH P+ IVPP Sbjct: 10 RKIVIPVDGSKHSERAFDWYKGALHRGNDEVFVVHA----FDPYAAPPTPYPYGFAFPEDWEQHMKKTVDDAKSVMEYYEKKCKDSKMKCT-MLTKPGDPGETICEIAKDKNADQIIMGSRGLGTVRRTIVGSVSEFCLHHTHIPMSIVPP 155
BLAST of Usp domain-containing protein vs. Ensembl Nematostella
Match: EDO34658 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SNQ5]) HSP 1 Score: 87.0409 bits (214), Expect = 1.465e-21 Identity = 48/161 (29.81%), Postives = 86/161 (53.42%), Query Frame = 3 Query: 114 LGDDETERVIVIPIDNSEYTERTVDWYVENIMKPHD---MVHMVNIVEPIYNSFSAGLAMEAAILTMSEDAETKIKKQIDKGKQLVKRYIHELRDKGGKGKGYIRVDSNVGEAIVKVCHEHKADIVLLSNRGEGIIRRTFLGSVSDYVLHHVDRPVIIVPP 587 + + + +VI +D SE+++R ++Y +N+ K D ++H +I E GLA E + +++ ++ K+++ R+ + ++ K + +V N GE I E AD V+L RG+G +RRTF+GSVS+Y +HH P+ +VPP Sbjct: 1 MAQESQKSRVVIAVDGSEHSDRAFEFYSQNMHKKGDEVLLIHANDIAERHIQLHPYGLAT-------VEGWDKWLERCTEESKKMLSRFEKKCKENKFNCKLFTKV-GNPGEVICDFTEEKNADQVVLGCRGQGTVRRTFMGSVSEYCIHHATTPITVVPP 153
BLAST of Usp domain-containing protein vs. Ensembl Nematostella
Match: EDO44746 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RUS8]) HSP 1 Score: 84.7297 bits (208), Expect = 8.860e-21 Identity = 48/153 (31.37%), Postives = 86/153 (56.21%), Query Frame = 3 Query: 132 ERVIVIPIDNSEYTERTVDWYVENIMKPHDMVHMVNIVE-PIYNSFSAGLAMEAAILTMSEDAETKIKKQIDKGKQLVKRYIHELRDKGGKGKGYIRVDSNVGEAIVKVCHEHKADIVLLSNRGEGIIRRTFLGSVSDYVLHHVDRPVIIVPP 587 +R +VIP+D S+++ER +WY +++ +P D V +++ E P S + A +L ++ + + I K+L++ Y + +++G + + GE I ++ + A V++ +RG G IRRT LGSVSDY +HH PV ++PP Sbjct: 6 KRRVVIPVDGSQHSERAFNWYRQHVHEPGDEVLIIHTQEQPTIPS--SPYAYGGTVL--PDEWNKAVDECIVNAKKLIEEYNKKCKEQGMTCR-LFKGSGQPGETICQLAKDLSAKHVVMGSRGCGTIRRTLLGSVSDYCVHHSSVPVTVIPP 153
BLAST of Usp domain-containing protein vs. Ensembl Nematostella
Match: EDO49708 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RFF6]) HSP 1 Score: 84.3445 bits (207), Expect = 1.117e-20 Identity = 45/154 (29.22%), Postives = 91/154 (59.09%), Query Frame = 3 Query: 132 ERVIVIPIDNSEYTERTVDWYVENIMKPHDMVHMVNIVE--PIYNSFSAGLAMEAAILTMSEDAETKIKKQIDKGKQLVKRYIHELRDKGGKGKGYIRVDSNVGEAIVKVCHEHKADIVLLSNRGEGIIRRTFLGSVSDYVLHHVDRPVIIVPP 587 +R +++ ID+SE++ R +WY ENI + +++ +V+ E PI+ + +A T+ + + KK + K+L++ + +++ + + ++ N G AI+K+ + K + V++ +RG+ ++RRT +GSVSD+++HH PV I PP Sbjct: 13 KRRVLLAIDHSEHSMRAFEWYFENIHRDDNLLMLVHSQELPPIF------IPPDAFGTTLYNEWLAEAKKASLQSKKLLEGFERMCKERHCECEKHLLEGDNPGPAIIKLIKKSKPNYVVIGSRGQSMVRRTVMGSVSDFIIHHAHVPVCISPP 160
BLAST of Usp domain-containing protein vs. Planmine SMEST
Match: SMESG000020955.1 (SMESG000020955.1) HSP 1 Score: 337.035 bits (863), Expect = 1.754e-119 Identity = 164/165 (99.39%), Postives = 165/165 (100.00%), Query Frame = 3 Query: 102 MSTGLGDDETERVIVIPIDNSEYTERTVDWYVENIMKPHDMVHMVNIVEPIYNSFSAGLAMEAAILTMSEDAETKIKKQIDKGKQLVKRYIHELRDKGGKGKGYIRVDSNVGEAIVKVCHEHKADIVLLSNRGEGIIRRTFLGSVSDYVLHHVDRPVIIVPPLHH 596 MSTGLGDDETERVIVIPIDNSEYTERTVDWYVENIMKPHDMVHMVNIVEPI+NSFSAGLAMEAAILTMSEDAETKIKKQIDKGKQLVKRYIHELRDKGGKGKGYIRVDSNVGEAIVKVCHEHKADIVLLSNRGEGIIRRTFLGSVSDYVLHHVDRPVIIVPPLHH Sbjct: 1 MSTGLGDDETERVIVIPIDNSEYTERTVDWYVENIMKPHDMVHMVNIVEPIFNSFSAGLAMEAAILTMSEDAETKIKKQIDKGKQLVKRYIHELRDKGGKGKGYIRVDSNVGEAIVKVCHEHKADIVLLSNRGEGIIRRTFLGSVSDYVLHHVDRPVIIVPPLHH 165
BLAST of Usp domain-containing protein vs. Planmine SMEST
Match: SMESG000020952.1 (SMESG000020952.1) HSP 1 Score: 234.958 bits (598), Expect = 3.254e-79 Identity = 104/158 (65.82%), Postives = 136/158 (86.08%), Query Frame = 3 Query: 120 DDETERVIVIPIDNSEYTERTVDWYVENIMKPHDMVHMVNIVEPIYNSFSAGLAMEAAILTMSEDAETKIKKQIDKGKQLVKRYIHELRDKGGKGKGYIRVDSNVGEAIVKVCHEHKADIVLLSNRGEGIIRRTFLGSVSDYVLHHVDRPVIIVPPLH 593 +DE ERVI++P+D SE+TER +DWYVEN+MKP+D+V M++IVEP+Y S + G+ ME A L + ED E+KIKKQ+DKGK LVK++ HEL++KGG+ KGY+ VDS VGEAI+KVCH HK D+++++NRGEG+IRRTFLGSVSDYVLHH DRPV+I+PP H Sbjct: 6 NDEVERVILMPVDRSEHTERAIDWYVENLMKPNDLVQMIHIVEPMYTSTAVGIGMEVAFLPV-EDLESKIKKQLDKGKSLVKKFTHELQEKGGRAKGYVIVDSKVGEAIIKVCHTHKVDLIIVANRGEGLIRRTFLGSVSDYVLHHADRPVVIIPPKH 162
BLAST of Usp domain-containing protein vs. Planmine SMEST
Match: SMESG000020882.1 (SMESG000020882.1) HSP 1 Score: 223.787 bits (569), Expect = 1.083e-74 Identity = 102/156 (65.38%), Postives = 130/156 (83.33%), Query Frame = 3 Query: 126 ETERVIVIPIDNSEYTERTVDWYVENIMKPHDMVHMVNIVEPIYNSFSAGLAMEAAILTMSEDAETKIKKQIDKGKQLVKRYIHELRDKGGKGKGYIRVDSNVGEAIVKVCHEHKADIVLLSNRGEGIIRRTFLGSVSDYVLHHVDRPVIIVPPLH 593 E+ER+I+IPID SE + R +DWY N+MK +D+VH+++IVEPIYN+ + G+ MEAA L M E+ + KI+KQIDKGK LV+ YI L DKGGK KG+IRVDS VGE I+ VCH+H AD++L++NRGEG++RRTFLGSVSDYVLHH D+PVIIVPPLH Sbjct: 16 ESERIIIIPIDKSEVSRRALDWYSNNMMKENDVVHLIHIVEPIYNTIAVGIGMEAAWLPM-EELDAKIQKQIDKGKALVREYISNLTDKGGKCKGFIRVDSRVGECIISVCHDHLADVILMANRGEGLLRRTFLGSVSDYVLHHADKPVIIVPPLH 170
BLAST of Usp domain-containing protein vs. Planmine SMEST
Match: SMESG000020884.1 (SMESG000020884.1) HSP 1 Score: 186.037 bits (471), Expect = 2.068e-60 Identity = 86/130 (66.15%), Postives = 110/130 (84.62%), Query Frame = 3 Query: 204 IMKPHDMVHMVNIVEPIYNSFSAGLAMEAAILTMSEDAETKIKKQIDKGKQLVKRYIHELRDKGGKGKGYIRVDSNVGEAIVKVCHEHKADIVLLSNRGEGIIRRTFLGSVSDYVLHHVDRPVIIVPPLH 593 +M+ +D+VH+++IVEPIYN+ + G+ MEAA L M E+ + KI+KQIDKGK LV+ YI L DKGGK KG+IRVDS VGE I+ VCH+H AD++L++NRGEG++RRTFLGSVSDYVLHH D+PVIIVPPLH Sbjct: 1 MMRENDVVHLIHIVEPIYNTIAVGIGMEAAWLPM-EELDAKIQKQIDKGKALVREYISNLTDKGGKCKGFIRVDSRVGECIISVCHDHLADVILMANRGEGLLRRTFLGSVSDYVLHHADKPVIIVPPLH 129
BLAST of Usp domain-containing protein vs. Planmine SMEST
Match: SMESG000020954.1 (SMESG000020954.1) HSP 1 Score: 154.451 bits (389), Expect = 1.715e-47 Identity = 65/153 (42.48%), Postives = 109/153 (71.24%), Query Frame = 3 Query: 132 ERVIVIPIDNSEYTERTVDWYVENIMKPHDMVHMVNIVEPIYNSFSAGLAMEAAILTMSEDAETKIKKQIDKGKQLVKRYIHELRDKGGKGKGYIRVDSNVGEAIVKVCHEHKADIVLLSNRGEGIIRRTFLGSVSDYVLHHVDRPVIIVPPL 590 ER+I+IPIDN + ++R++ WY++N+MKP+D VH++ +++P YN + GL + ++ T ++++K+ K+I+ GK+LV+ YI+EL +G KG GYIR+ VG+ +V VC+EH D ++++ R + + GS+S YV H +RPVI+VPPL Sbjct: 8 ERIIIIPIDNRDASKRSLAWYLDNMMKPNDTVHIIYVIKPKYNLSTVGLVYKISLATPIGNSDSKLHKRIEDGKELVRSYINELTTRGAKGTGYIRIHPKVGQTVVDVCNEHLGDYIIITKRKKSSFKENLFGSISHYVFSHSNRPVIMVPPL 160 The following BLAST results are available for this feature:
BLAST of Usp domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of Usp domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Usp domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of Usp domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of Usp domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of Usp domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of Usp domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 1
BLAST of Usp domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Usp domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of Usp domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of Usp domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Usp domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 5
BLAST of Usp domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of Usp domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30008017 ID=SMED30008017|Name=Usp domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=678bpback to top protein sequence of SMED30008017-orf-1 >SMED30008017-orf-1 ID=SMED30008017-orf-1|Name=SMED30008017-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=166bp MSTGLGDDETERVIVIPIDNSEYTERTVDWYVENIMKPHDMVHMVNIVEPback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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