SMED30007870

Overview
NameSMED30007870
Smed IDSMED30007870
Length (bp)1098
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30007870 (SMED30007870) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30007870 (SMED30007870) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30007870 (SMED30007870) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30007870 (SMED30007870) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30007870

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 9

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
intestinal phagocyteSMED30007870SMESG000014167.1 SMESG000014166.1 Contig139newmark_estsPMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30007870SMESG000014167.1 SMESG000014166.1 Contig139uc_Smed_v2PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
pharynxSMED30007870SMESG000056845.1 SMESG000044775.1 SMESG000007087.1 SMESG000007085.1 SMESG000056847.1 SMESG000056838.1 SMESG000044770.1 SMESG000007140.1 SMESG000044776.1 SMESG000044783.1 SMESG000038659.1 SMESG000030652.1 SMESG000025467.1 SMESG000013956.1 SMESG000056843.1 SMESG000044762.1 dd_Smed_v6_1137_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
intestinal phagocyteSMED30007870SMESG000056845.1 SMESG000044775.1 SMESG000007087.1 SMESG000007085.1 SMESG000056847.1 SMESG000056838.1 SMESG000044770.1 SMESG000007140.1 SMESG000044776.1 SMESG000044783.1 SMESG000038659.1 SMESG000030652.1 SMESG000025467.1 SMESG000013956.1 SMESG000056843.1 SMESG000044762.1 dd_Smed_v6_1137_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neuronSMED30007870SMESG000056845.1 SMESG000044775.1 SMESG000007087.1 SMESG000007085.1 SMESG000056847.1 SMESG000056838.1 SMESG000044770.1 SMESG000007140.1 SMESG000044776.1 SMESG000044783.1 SMESG000038659.1 SMESG000030652.1 SMESG000025467.1 SMESG000013956.1 SMESG000056843.1 SMESG000044762.1 dd_Smed_v6_1137_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cholinergic neuronSMED30007870SMESG000056845.1 SMESG000044775.1 SMESG000007087.1 SMESG000007085.1 SMESG000056847.1 SMESG000056838.1 SMESG000044770.1 SMESG000007140.1 SMESG000044776.1 SMESG000044783.1 SMESG000038659.1 SMESG000030652.1 SMESG000025467.1 SMESG000013956.1 SMESG000056843.1 SMESG000044762.1 dd_Smed_v6_1137_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30007870SMESG000056845.1 SMESG000044775.1 SMESG000007087.1 SMESG000007085.1 SMESG000056847.1 SMESG000056838.1 SMESG000044770.1 SMESG000007140.1 SMESG000044776.1 SMESG000044783.1 SMESG000038659.1 SMESG000030652.1 SMESG000025467.1 SMESG000013956.1 SMESG000056843.1 SMESG000044762.1 dd_Smed_v6_1137_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
GABAergic neuronSMED30007870SMESG000056845.1 SMESG000044775.1 SMESG000007087.1 SMESG000007085.1 SMESG000056847.1 SMESG000056838.1 SMESG000044770.1 SMESG000007140.1 SMESG000044776.1 SMESG000044783.1 SMESG000038659.1 SMESG000030652.1 SMESG000025467.1 SMESG000013956.1 SMESG000056843.1 SMESG000044762.1 dd_Smed_v6_1137_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
secretory systemSMED30007870SMESG000056845.1 SMESG000044775.1 SMESG000007087.1 SMESG000007085.1 SMESG000056847.1 SMESG000056838.1 SMESG000044770.1 SMESG000007140.1 SMESG000044776.1 SMESG000044783.1 SMESG000038659.1 SMESG000030652.1 SMESG000025467.1 SMESG000013956.1 SMESG000056843.1 SMESG000044762.1 dd_Smed_v6_1137_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30007870 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.004878:13000..20469 -4516
v31.001626:2321..5858 -4009
Homology
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BLAST of SMED30007870 vs. Planmine SMEST
Match: SMESG000044783.1 (SMESG000044783.1)

HSP 1 Score: 415.231 bits (1066), Expect = 3.556e-140
Identity = 246/326 (75.46%), Postives = 268/326 (82.21%), Query Frame = 1 
Query:  133 MAKADEFKFLLLSGDIVDDCHYKPHVAKLRQVEAKYYSDFSKTDRVKAHHSNLFQNISDLQPDEIYKLXXXXXXXXXXXXXXXXXXGELFIKYLTEDGQINCKPASFFKEIPKKPRKPKTFPHADNQGARKPTIL----QEPVTKPRYYIITDANCEEIGSIILMHNRVTKMLNTDKMISKTYQINQLNEIDRDHAFYLSKFPANESINEWKCETFKQIKALKTGQDCHYKNDMENIYNIITKNVTEKGIYFSIRPKGELLKSLVVDASEIGFIQXXXXXXXXXXXXXXXXXXFDRQNSATSRTSNDSRDYMSNKYKSEDHSIKVV 1098
            MA ADEFKFLL +GDIVDDCH K H A L Q EAKYY  FS  DRV A+ + LFQ IS+LQPDEIYKLKSNK KSYIKIIEK E NGE+FIKYLTEDGQ +   AS FKEIPKK + P+TFP ADNQGARKP+I+     + VTKPRYYIITDANCEEIGSIIL+HNR TKMLNTDKMISKTYQINQLNEIDRDHAFYLSKFPANESINEWKCETF+QIKAL+ GQ+C YKND ENIY I  KN TEKGI FSI+PK        VDASEI  IQK KSIEKSESKSTEK++KFDRQNSATSRTSNDSRDY++NK KSE   +K +
Sbjct:    1 MANADEFKFLLQNGDIVDDCHNKLHFAILVQAEAKYYLHFSMADRVNAYRNKLFQKISELQPDEIYKLKSNKGKSYIKIIEKNEINGEIFIKYLTEDGQSHYNSASIFKEIPKKAKNPRTFPPADNQGARKPSIVIHEANDFVTKPRYYIITDANCEEIGSIILIHNRATKMLNTDKMISKTYQINQLNEIDRDHAFYLSKFPANESINEWKCETFEQIKALEIGQECRYKNDRENIYKITAKNFTEKGISFSIQPKDGNKSFRDVDASEIRLIQKTKSIEKSESKSTEKSAKFDRQNSATSRTSNDSRDYLANKSKSELKYVKEI 326
[Close]
BLAST of SMED30007870 vs. Planmine SMEST
Match: SMESG000044783.1 (SMESG000044783.1)

HSP 1 Score: 414.846 bits (1065), Expect = 2.509e-136
Identity = 246/326 (75.46%), Postives = 268/326 (82.21%), Query Frame = 1 
Query:  133 MAKADEFKFLLLSGDIVDDCHYKPHVAKLRQVEAKYYSDFSKTDRVKAHHSNLFQNISDLQPDEIYKLXXXXXXXXXXXXXXXXXXGELFIKYLTEDGQINCKPASFFKEIPKKPRKPKTFPHADNQGARKPTIL----QEPVTKPRYYIITDANCEEIGSIILMHNRVTKMLNTDKMISKTYQINQLNEIDRDHAFYLSKFPANESINEWKCETFKQIKALKTGQDCHYKNDMENIYNIITKNVTEKGIYFSIRPKGELLKSLVVDASEIGFIQXXXXXXXXXXXXXXXXXXFDRQNSATSRTSNDSRDYMSNKYKSEDHSIKVV 1098
            MA ADEFKFLL +GDIVDDCH K H A L Q EAKYY  FS  DRV A+ + LFQ IS+LQPDEIYKLKSNK KSYIKIIEK E NGE+FIKYLTEDGQ +   AS FKEIPKK + P+TFP ADNQGARKP+I+     + VTKPRYYIITDANCEEIGSIIL+HNR TKMLNTDKMISKTYQINQLNEIDRDHAFYLSKFPANESINEWKCETF+QIKAL+ GQ+C YKND ENIY I  KN TEKGI FSI+PK        VDASEI  IQK KSIEKSESKSTEK++KFDRQNSATSRTSNDSRDY++NK KSE   +K +
Sbjct:    1 MANADEFKFLLQNGDIVDDCHNKLHFAILVQAEAKYYLHFSMADRVNAYRNKLFQKISELQPDEIYKLKSNKGKSYIKIIEKNEINGEIFIKYLTEDGQSHYNSASIFKEIPKKAKNPRTFPPADNQGARKPSIVIHEANDFVTKPRYYIITDANCEEIGSIILIHNRATKMLNTDKMISKTYQINQLNEIDRDHAFYLSKFPANESINEWKCETFEQIKALEIGQECRYKNDRENIYKITAKNFTEKGISFSIQPKDGNKSFRDVDASEIRLIQKTKSIEKSESKSTEKSAKFDRQNSATSRTSNDSRDYLANKSKSELKYVKEI 326
[Close]
BLAST of SMED30007870 vs. Planmine SMEST
Match: SMESG000044783.1 (SMESG000044783.1)

HSP 1 Score: 414.846 bits (1065), Expect = 2.734e-136
Identity = 246/326 (75.46%), Postives = 268/326 (82.21%), Query Frame = 1 
Query:  133 MAKADEFKFLLLSGDIVDDCHYKPHVAKLRQVEAKYYSDFSKTDRVKAHHSNLFQNISDLQPDEIYKLXXXXXXXXXXXXXXXXXXGELFIKYLTEDGQINCKPASFFKEIPKKPRKPKTFPHADNQGARKPTIL----QEPVTKPRYYIITDANCEEIGSIILMHNRVTKMLNTDKMISKTYQINQLNEIDRDHAFYLSKFPANESINEWKCETFKQIKALKTGQDCHYKNDMENIYNIITKNVTEKGIYFSIRPKGELLKSLVVDASEIGFIQXXXXXXXXXXXXXXXXXXFDRQNSATSRTSNDSRDYMSNKYKSEDHSIKVV 1098
            MA ADEFKFLL +GDIVDDCH K H A L Q EAKYY  FS  DRV A+ + LFQ IS+LQPDEIYKLKSNK KSYIKIIEK E NGE+FIKYLTEDGQ +   AS FKEIPKK + P+TFP ADNQGARKP+I+     + VTKPRYYIITDANCEEIGSIIL+HNR TKMLNTDKMISKTYQINQLNEIDRDHAFYLSKFPANESINEWKCETF+QIKAL+ GQ+C YKND ENIY I  KN TEKGI FSI+PK        VDASEI  IQK KSIEKSESKSTEK++KFDRQNSATSRTSNDSRDY++NK KSE   +K +
Sbjct:    1 MANADEFKFLLQNGDIVDDCHNKLHFAILVQAEAKYYLHFSMADRVNAYRNKLFQKISELQPDEIYKLKSNKGKSYIKIIEKNEINGEIFIKYLTEDGQSHYNSASIFKEIPKKAKNPRTFPPADNQGARKPSIVIHEANDFVTKPRYYIITDANCEEIGSIILIHNRATKMLNTDKMISKTYQINQLNEIDRDHAFYLSKFPANESINEWKCETFEQIKALEIGQECRYKNDRENIYKITAKNFTEKGISFSIQPKDGNKSFRDVDASEIRLIQKTKSIEKSESKSTEKSAKFDRQNSATSRTSNDSRDYLANKSKSELKYVKEI 326
[Close]
BLAST of SMED30007870 vs. Planmine SMEST
Match: SMESG000044783.1 (SMESG000044783.1)

HSP 1 Score: 413.69 bits (1062), Expect = 3.830e-133
Identity = 246/324 (75.93%), Postives = 267/324 (82.41%), Query Frame = 1 
Query:  133 MAKADEFKFLLLSGDIVDDCHYKPHVAKLRQVEAKYYSDFSKTDRVKAHHSNLFQNISDLQPDEIYKLXXXXXXXXXXXXXXXXXXGELFIKYLTEDGQINCKPASFFKEIPKKPRKPKTFPHADNQGARKPTIL----QEPVTKPRYYIITDANCEEIGSIILMHNRVTKMLNTDKMISKTYQINQLNEIDRDHAFYLSKFPANESINEWKCETFKQIKALKTGQDCHYKNDMENIYNIITKNVTEKGIYFSIRPKGELLKSLVVDASEIGFIQXXXXXXXXXXXXXXXXXXFDRQNSATSRTSNDSRDYMSNKYKSEDHSIK 1092
            MA ADEFKFLL +GDIVDDCH K H A L Q EAKYY  FS  DRV A+ + LFQ IS+LQPDEIYKLKSNK KSYIKIIEK E NGE+FIKYLTEDGQ +   AS FKEIPKK + P+TFP ADNQGARKP+I+     + VTKPRYYIITDANCEEIGSIIL+HNR TKMLNTDKMISKTYQINQLNEIDRDHAFYLSKFPANESINEWKCETF+QIKAL+ GQ+C YKND ENIY I  KN TEKGI FSI+PK        VDASEI  IQK KSIEKSESKSTEK++KFDRQNSATSRTSNDSRDY++NK KSE   +K
Sbjct:    1 MANADEFKFLLQNGDIVDDCHNKLHFAILVQAEAKYYLHFSMADRVNAYRNKLFQKISELQPDEIYKLKSNKGKSYIKIIEKNEINGEIFIKYLTEDGQSHYNSASIFKEIPKKAKNPRTFPPADNQGARKPSIVIHEANDFVTKPRYYIITDANCEEIGSIILIHNRATKMLNTDKMISKTYQINQLNEIDRDHAFYLSKFPANESINEWKCETFEQIKALEIGQECRYKNDRENIYKITAKNFTEKGISFSIQPKDGNKSFRDVDASEIRLIQKTKSIEKSESKSTEKSAKFDRQNSATSRTSNDSRDYLANKSKSELKYVK 324
[Close]
BLAST of SMED30007870 vs. Planmine SMEST
Match: SMESG000056845.1 (SMESG000056845.1)

HSP 1 Score: 396.356 bits (1017), Expect = 6.391e-127
Identity = 222/276 (80.43%), Postives = 235/276 (85.14%), Query Frame = 1 
Query:  133 MAKADEFKFLLLSGDIVDDCHYKPHVAKLRQVEAKYYSDFSKTDRVKAHHSNLFQNISDLQPDEIYKLXXXXXXXXXXXXXXXXXXGELFIKYLTEDGQINCKPASFFKEIPKKPRKPKTFPHADNQGARKPTIL----QEPVTKPRYYIITDANCEEIGSIILMHNRVTKMLNTDKMISKTYQINQLNEIDRDHAFYLSKFPANESINEWKCETFKQIKALKTGQDCHYKNDMENIYNIITKNVTEKGIYFSIRPKGELLKSLV-VDASEIGFIQ 945
            MA ADEFK LL +GDIVDDC  KPHVAKL QVEAKYY DFS  DRV A+H+ LFQNISDLQ DEIYKLKSNK KSYIKIIEKYEY GELFIKYLTEDG+IN KPASFFKEIPKK RKP+TFP ADNQGARKP+I+     + VTKPRYYIITDANCEEIGSIIL+HNR TKMLNTDKMISKTYQI QLNEIDRD AFYLSKFPANESINEWKCETF+QIKAL+ GQ+C YKND ENIY I  KN TEKGIYFSI+PK E  KS   VDASEI  IQ
Sbjct:    1 MANADEFKLLLQNGDIVDDCDNKPHVAKLGQVEAKYYLDFSMADRVNAYHNKLFQNISDLQLDEIYKLKSNKVKSYIKIIEKYEYKGELFIKYLTEDGRINFKPASFFKEIPKKARKPRTFPPADNQGARKPSIVIHEANDFVTKPRYYIITDANCEEIGSIILIHNRATKMLNTDKMISKTYQIKQLNEIDRDQAFYLSKFPANESINEWKCETFEQIKALEIGQECRYKNDRENIYKITAKNFTEKGIYFSIQPK-EGNKSFRDVDASEIRLIQ 275
The following BLAST results are available for this feature:
BLAST of SMED30007870 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007870 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007870 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007870 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007870 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007870 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007870 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007870 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007870 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007870 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007870 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007870 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007870 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007870 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000044783.13.556e-14075.46SMESG000044783.1[more]
SMESG000044783.12.509e-13675.46SMESG000044783.1[more]
SMESG000044783.12.734e-13675.46SMESG000044783.1[more]
SMESG000044783.13.830e-13375.93SMESG000044783.1[more]
SMESG000056845.16.391e-12780.43SMESG000056845.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30007870 ID=SMED30007870|Name=SMED30007870|organism=Schmidtea mediterranea sexual|type=transcript|length=1098bp
AATTTAAATTCTTTTAAATATCATCCGGTTTTTTCTGTATTCATAATTTT
ATATTGAATTAAATAACATTCATTAAATTATTGAAGAGTAATTATATGTT
TGAATAATCTTGTTTGTTAATAATTGAAAATTATGGCGAAAGCAGATGAA
TTTAAATTCCTATTGCTATCCGGAGATATTGTTGATGATTGTCATTACAA
ACCTCACGTTGCTAAATTGCGTCAAGTAGAAGCGAAATATTATTCGGATT
TCAGCAAGACAGATAGAGTGAAGGCTCATCACAGTAATTTATTTCAAAAC
ATATCAGATCTTCAACCTGATGAAATATATAAATTAAAATCTAACAAAGA
GAAAAGTTATATCAAGATTATAGAAAAATACGAATACAATGGCGAACTTT
TTATAAAGTATCTCACTGAGGATGGACAAATTAATTGCAAACCGGCTTCT
TTCTTTAAAGAAATTCCAAAGAAACCAAGAAAACCAAAGACATTTCCACA
TGCTGATAATCAAGGTGCGAGAAAGCCAACCATTTTGCAGGAGCCTGTGA
CGAAGCCACGATATTACATAATCACTGATGCGAATTGTGAGGAAATCGGA
TCGATAATTCTCATGCACAACAGGGTTACCAAAATGCTAAATACGGATAA
AATGATCAGCAAAACTTATCAAATCAACCAATTAAATGAAATTGATCGAG
ATCACGCATTTTATTTGTCCAAATTTCCAGCCAATGAAAGCATTAATGAA
TGGAAATGTGAAACATTCAAGCAAATAAAAGCATTGAAAACTGGACAAGA
TTGCCACTACAAAAATGACATGGAAAATATATATAACATTATAACTAAAA
ATGTTACAGAAAAAGGAATTTATTTTTCCATACGGCCAAAGGGAGAACTT
TTAAAATCACTAGTTGTGGACGCTTCTGAGATCGGATTTATTCAGAAAAT
GAAAAGTATAGAAAAATCCGAAAGTAAGAGCACCGAGAAAGCCTCAAAAT
TCGACAGACAAAACAGTGCCACTAGTAGAACATCAAACGATTCCAGAGAT
TACATGTCCAATAAATATAAATCCGAAGATCATAGCATTAAAGTGGTT
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protein sequence of SMED30007870-orf-1

>SMED30007870-orf-1 ID=SMED30007870-orf-1|Name=SMED30007870-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=322bp
MAKADEFKFLLLSGDIVDDCHYKPHVAKLRQVEAKYYSDFSKTDRVKAHH
SNLFQNISDLQPDEIYKLKSNKEKSYIKIIEKYEYNGELFIKYLTEDGQI
NCKPASFFKEIPKKPRKPKTFPHADNQGARKPTILQEPVTKPRYYIITDA
NCEEIGSIILMHNRVTKMLNTDKMISKTYQINQLNEIDRDHAFYLSKFPA
NESINEWKCETFKQIKALKTGQDCHYKNDMENIYNIITKNVTEKGIYFSI
RPKGELLKSLVVDASEIGFIQKMKSIEKSESKSTEKASKFDRQNSATSRT
SNDSRDYMSNKYKSEDHSIKVV
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000070intestinal phagocyte
PLANA:0000099neuron
PLANA:0000463cholinergic neuron
PLANA:0000464GABAergic neuron
PLANA:0000484secretory system
PLANA:0003116parenchymal cell