SMED30007801

Overview
NameSMED30007801
Smed IDSMED30007801
Length (bp)1589
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30007801 (SMED30007801) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30007801 (SMED30007801) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30007801 (SMED30007801) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30007801 (SMED30007801) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30007801

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 8

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
tail regionSMED30007801SMESG000031990.1 SmedASXL_013796SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
nervous systemSMED30007801SMESG000031990.1 dd_Smed_v4_14679_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30007801SMESG000031990.1 dd_Smed_v4_14679_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30007801SMESG000031990.1 dd_Smed_v4_14679_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30007801SMESG000031990.1 dd_Smed_v4_14679_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30007801SMESG000031990.1 dd_Smed_v4_14679_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
ventral epidermisSMED30007801SMESG000031990.1 dd_Smed_v4_14679_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
ventral epidermisSMED30007801SMESG000031990.1 dd_Smed_v4_14679_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult colorimetric in situ hybridization evidence
Note: Hover over icons to view figure legend
Alignments
SMED30007801 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.015746:5730..10560 +7877
Homology
[Close]
BLAST of SMED30007801 vs. TrEMBL
Match: A0A267ECA1 (Uncharacterized protein (Fragment) OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig030359g1 PE=4 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.175e-11
Identity = 45/134 (33.58%), Postives = 68/134 (50.75%), Query Frame = 1 
Query: 1123 KEKEMREFLSLPFVAYRRNSAGRIIELDHPPQKKEFKEPSNKDKYKIRKVLGDERNRYQESMVNLTKTTEKIIQEDIRKKNLLNAPKIEIKKEIMYEGTKIGPQHWMKAFVSSNIPNDVDPSSTEAIIYCRYIR 1524
            +E+  ++ L  P+  YR    G I  ++  P K    EPSN+  Y+  K L  E+  Y  SM  L + T +++ E+IR       PK +  K    +  K+GP  WMK F+ +N P DV+  S EA+ Y  Y+R
Sbjct:  417 REEASKKLLHEPYTHYRMVKGGSIEPVEFQPPKFPTTEPSNRPLYEQHKRLEREKANYMSSMNRLGQFTAEVLNEEIRLAQAFEMPKEKENKSRPPKEMKLGPSDWMKVFIRTNAPEDVESGSFEAMKYVEYLR 550
[Close]
BLAST of SMED30007801 vs. TrEMBL
Match: A0A267E1J6 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig030359g2 PE=4 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 8.203e-11
Identity = 45/134 (33.58%), Postives = 68/134 (50.75%), Query Frame = 1 
Query: 1123 KEKEMREFLSLPFVAYRRNSAGRIIELDHPPQKKEFKEPSNKDKYKIRKVLGDERNRYQESMVNLTKTTEKIIQEDIRKKNLLNAPKIEIKKEIMYEGTKIGPQHWMKAFVSSNIPNDVDPSSTEAIIYCRYIR 1524
            +E+  ++ L  P+  YR    G I  ++  P K    EPSN+  Y+  K L  E+  Y  SM  L + T +++ E+IR       PK +  K    +  K+GP  WMK F+ +N P DV+  S EA+ Y  Y+R
Sbjct:  342 REEASKKLLHEPYTHYRMVKGGSIEPVEFQPPKFPTTEPSNRPLYEQHKRLEREKANYMSSMNRLGQFTAEVLNEEIRLAQAFEMPKEKENKSRPPKEMKLGPSDWMKVFIRTNAPEDVESGSFEAMKYVEYLR 475
[Close]
BLAST of SMED30007801 vs. TrEMBL
Match: A0A267FZU7 (Uncharacterized protein (Fragment) OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig030359g3 PE=4 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 8.542e-11
Identity = 45/134 (33.58%), Postives = 68/134 (50.75%), Query Frame = 1 
Query: 1123 KEKEMREFLSLPFVAYRRNSAGRIIELDHPPQKKEFKEPSNKDKYKIRKVLGDERNRYQESMVNLTKTTEKIIQEDIRKKNLLNAPKIEIKKEIMYEGTKIGPQHWMKAFVSSNIPNDVDPSSTEAIIYCRYIR 1524
            +E+  ++ L  P+  YR    G I  ++  P K    EPSN+  Y+  K L  E+  Y  SM  L + T +++ E+IR       PK +  K    +  K+GP  WMK F+ +N P DV+  S EA+ Y  Y+R
Sbjct:  417 REEASKKLLHEPYTHYRMVKGGGIEPVEFQPPKFPTTEPSNRPLYEQHKRLEREKANYMSSMNRLGQFTAEVLNEEIRLAQAFEMPKEKENKSRPPKEMKLGPSDWMKVFIRTNAPEDVESGSFEAMKYVEYLR 550
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BLAST of SMED30007801 vs. Planmine SMEST
Match: SMESG000031990.1 (SMESG000031990.1)

HSP 1 Score: 903.664 bits (2334), Expect = 0.000e+0
Identity = 509/509 (100.00%), Postives = 509/509 (100.00%), Query Frame = 1 
Query:   55 MQIFILEHSFYSMKADDFISTHLSRINEAXXXXXXXXXXXXXXXYPLINLKTGLKNEIIERTIKDLKKASNNCKKHIYHRASEFSHGVIGQNKSAQFELNKAVNYFFSEQEYILEKMKKAQQKTLEDLQRIHFDRRQQMRMSYEYHNEEMRQSLLKVKEEAQFLQRQEELEEAMRQKKMSINKLIVEQRNLLKETSPXXXXXXXXXQPIEASMTXXXXXXXXXXXXXXXXXFNDKDKEINIIESYLPKSRSFLQIKAIEVTKDILNPRTIERNMEDCLPKYDETLPVIVKLQNEDRKSIFQVESXXXXXXXXXXXXXXXXFEDLTDHNEDSSSYEETKPEDKFKTSKDVMKNHKLMKEKEMREFLSLPFVAYRRNSAGRIIELDHPPQKKEFKEPSNKDKYKIRKVLGDERNRYQESMVNLTKTTEKIIQEDIRKKNLLNAPKIEIKKEIMYEGTKIGPQHWMKAFVSSNIPNDVDPSSTEAIIYCRYIRAPLKTYSHLPNYLIYHTPL 1581
            MQIFILEHSFYSMKADDFISTHLSRINEAVEDDEENIEDSSDVDYPLINLKTGLKNEIIERTIKDLKKASNNCKKHIYHRASEFSHGVIGQNKSAQFELNKAVNYFFSEQEYILEKMKKAQQKTLEDLQRIHFDRRQQMRMSYEYHNEEMRQSLLKVKEEAQFLQRQEELEEAMRQKKMSINKLIVEQRNLLKETSPKLKKLRRKKQPIEASMTDKNEKNDKNINIILEKNFNDKDKEINIIESYLPKSRSFLQIKAIEVTKDILNPRTIERNMEDCLPKYDETLPVIVKLQNEDRKSIFQVESKNKEIIINNEKKNIEIFEDLTDHNEDSSSYEETKPEDKFKTSKDVMKNHKLMKEKEMREFLSLPFVAYRRNSAGRIIELDHPPQKKEFKEPSNKDKYKIRKVLGDERNRYQESMVNLTKTTEKIIQEDIRKKNLLNAPKIEIKKEIMYEGTKIGPQHWMKAFVSSNIPNDVDPSSTEAIIYCRYIRAPLKTYSHLPNYLIYHTPL
Sbjct:    1 MQIFILEHSFYSMKADDFISTHLSRINEAVEDDEENIEDSSDVDYPLINLKTGLKNEIIERTIKDLKKASNNCKKHIYHRASEFSHGVIGQNKSAQFELNKAVNYFFSEQEYILEKMKKAQQKTLEDLQRIHFDRRQQMRMSYEYHNEEMRQSLLKVKEEAQFLQRQEELEEAMRQKKMSINKLIVEQRNLLKETSPKLKKLRRKKQPIEASMTDKNEKNDKNINIILEKNFNDKDKEINIIESYLPKSRSFLQIKAIEVTKDILNPRTIERNMEDCLPKYDETLPVIVKLQNEDRKSIFQVESKNKEIIINNEKKNIEIFEDLTDHNEDSSSYEETKPEDKFKTSKDVMKNHKLMKEKEMREFLSLPFVAYRRNSAGRIIELDHPPQKKEFKEPSNKDKYKIRKVLGDERNRYQESMVNLTKTTEKIIQEDIRKKNLLNAPKIEIKKEIMYEGTKIGPQHWMKAFVSSNIPNDVDPSSTEAIIYCRYIRAPLKTYSHLPNYLIYHTPL 509
[Close]
BLAST of SMED30007801 vs. Planmine SMEST
Match: SMESG000031990.1 (SMESG000031990.1)

HSP 1 Score: 879.011 bits (2270), Expect = 0.000e+0
Identity = 497/497 (100.00%), Postives = 497/497 (100.00%), Query Frame = 1 
Query:   91 MKADDFISTHLSRINEAXXXXXXXXXXXXXXXYPLINLKTGLKNEIIERTIKDLKKASNNCKKHIYHRASEFSHGVIGQNKSAQFELNKAVNYFFSEQEYILEKMKKAQQKTLEDLQRIHFDRRQQMRMSYEYHNEEMRQSLLKVKEEAQFLQRQEELEEAMRQKKMSINKLIVEQRNLLKETSPXXXXXXXXXQPIEASMTXXXXXXXXXXXXXXXXXFNDKDKEINIIESYLPKSRSFLQIKAIEVTKDILNPRTIERNMEDCLPKYDETLPVIVKLQNEDRKSIFQVESXXXXXXXXXXXXXXXXFEDLTDHNEDSSSYEETKPEDKFKTSKDVMKNHKLMKEKEMREFLSLPFVAYRRNSAGRIIELDHPPQKKEFKEPSNKDKYKIRKVLGDERNRYQESMVNLTKTTEKIIQEDIRKKNLLNAPKIEIKKEIMYEGTKIGPQHWMKAFVSSNIPNDVDPSSTEAIIYCRYIRAPLKTYSHLPNYLIYHTPL 1581
            MKADDFISTHLSRINEAVEDDEENIEDSSDVDYPLINLKTGLKNEIIERTIKDLKKASNNCKKHIYHRASEFSHGVIGQNKSAQFELNKAVNYFFSEQEYILEKMKKAQQKTLEDLQRIHFDRRQQMRMSYEYHNEEMRQSLLKVKEEAQFLQRQEELEEAMRQKKMSINKLIVEQRNLLKETSPKLKKLRRKKQPIEASMTDKNEKNDKNINIILEKNFNDKDKEINIIESYLPKSRSFLQIKAIEVTKDILNPRTIERNMEDCLPKYDETLPVIVKLQNEDRKSIFQVESKNKEIIINNEKKNIEIFEDLTDHNEDSSSYEETKPEDKFKTSKDVMKNHKLMKEKEMREFLSLPFVAYRRNSAGRIIELDHPPQKKEFKEPSNKDKYKIRKVLGDERNRYQESMVNLTKTTEKIIQEDIRKKNLLNAPKIEIKKEIMYEGTKIGPQHWMKAFVSSNIPNDVDPSSTEAIIYCRYIRAPLKTYSHLPNYLIYHTPL
Sbjct:    1 MKADDFISTHLSRINEAVEDDEENIEDSSDVDYPLINLKTGLKNEIIERTIKDLKKASNNCKKHIYHRASEFSHGVIGQNKSAQFELNKAVNYFFSEQEYILEKMKKAQQKTLEDLQRIHFDRRQQMRMSYEYHNEEMRQSLLKVKEEAQFLQRQEELEEAMRQKKMSINKLIVEQRNLLKETSPKLKKLRRKKQPIEASMTDKNEKNDKNINIILEKNFNDKDKEINIIESYLPKSRSFLQIKAIEVTKDILNPRTIERNMEDCLPKYDETLPVIVKLQNEDRKSIFQVESKNKEIIINNEKKNIEIFEDLTDHNEDSSSYEETKPEDKFKTSKDVMKNHKLMKEKEMREFLSLPFVAYRRNSAGRIIELDHPPQKKEFKEPSNKDKYKIRKVLGDERNRYQESMVNLTKTTEKIIQEDIRKKNLLNAPKIEIKKEIMYEGTKIGPQHWMKAFVSSNIPNDVDPSSTEAIIYCRYIRAPLKTYSHLPNYLIYHTPL 497
The following BLAST results are available for this feature:
BLAST of SMED30007801 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007801 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007801 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007801 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007801 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007801 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007801 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007801 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 3
Match NameE-valueIdentityDescription
A0A267ECA18.175e-1133.58Uncharacterized protein (Fragment) OS=Macrostomum ... [more]
A0A267E1J68.203e-1133.58Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A267FZU78.542e-1133.58Uncharacterized protein (Fragment) OS=Macrostomum ... [more]
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BLAST of SMED30007801 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007801 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007801 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007801 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007801 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007801 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000031990.10.000e+0100.00SMESG000031990.1[more]
SMESG000031990.10.000e+0100.00SMESG000031990.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30007801 ID=SMED30007801|Name=SMED30007801|organism=Schmidtea mediterranea sexual|type=transcript|length=1589bp
ATTAAATATAAACGTATCTGCAACTGCATATTTCTTCTTAGAAATCTATG
ATTTATGCAGATATTTATTTTAGAACATTCTTTTTATTCAATGAAAGCCG
ATGATTTCATTTCAACTCACTTGTCACGAATCAACGAAGCGGTTGAGGAC
GACGAGGAGAATATCGAAGACAGCTCTGATGTTGACTATCCATTAATTAA
CCTCAAAACCGGTCTTAAAAATGAGATAATTGAGCGAACAATAAAAGATT
TGAAAAAAGCGTCGAACAATTGCAAAAAACACATTTACCACCGTGCAAGT
GAATTTTCTCATGGAGTTATTGGACAGAATAAATCGGCACAATTCGAATT
GAACAAAGCGGTTAATTATTTCTTTTCAGAACAAGAATATATTTTGGAGA
AAATGAAAAAGGCCCAACAAAAAACTTTAGAAGATTTACAGAGAATTCAT
TTCGACAGACGACAACAAATGAGGATGAGCTATGAATATCATAACGAAGA
AATGAGACAATCCTTGTTGAAAGTTAAAGAAGAAGCACAATTTCTTCAAC
GGCAAGAGGAACTTGAAGAAGCAATGAGACAGAAAAAAATGAGTATTAAT
AAATTAATCGTAGAGCAAAGAAATTTATTAAAAGAAACTTCACCAAAATT
GAAGAAATTAAGGCGAAAAAAGCAACCAATCGAGGCATCAATGACAGATA
AAAATGAGAAAAACGACAAAAATATTAATATTATTTTAGAAAAAAATTTC
AATGATAAAGATAAAGAAATAAATATAATCGAGAGTTATTTACCGAAGTC
AAGATCATTTCTTCAAATTAAAGCAATTGAAGTAACTAAAGATATTCTGA
ATCCCCGAACAATAGAAAGAAATATGGAGGATTGTTTACCAAAGTATGAC
GAAACATTACCAGTGATAGTTAAACTTCAAAACGAGGATCGTAAATCTAT
TTTCCAAGTCGAAAGTAAAAATAAAGAAATAATTATCAATAACGAAAAGA
AAAATATTGAAATATTTGAAGATTTAACAGATCATAATGAAGATTCTTCC
TCCTACGAAGAAACGAAACCGGAAGACAAATTCAAGACCTCAAAAGACGT
AATGAAAAATCACAAATTAATGAAGGAAAAGGAAATGAGAGAATTTCTTT
CACTCCCTTTTGTTGCATATCGTCGTAATAGTGCTGGGAGAATAATTGAA
CTCGATCATCCTCCGCAAAAAAAAGAATTCAAAGAGCCATCTAATAAAGA
TAAATATAAAATTCGAAAAGTACTTGGAGATGAAAGAAATAGATACCAAG
AATCCATGGTGAATTTAACTAAAACAACTGAAAAAATAATCCAAGAAGAT
ATAAGGAAAAAGAATTTATTAAACGCACCAAAAATTGAAATTAAGAAAGA
AATAATGTATGAAGGTACTAAGATTGGTCCACAACATTGGATGAAGGCGT
TTGTCAGTTCAAACATTCCAAATGATGTCGACCCGTCGTCCACTGAAGCA
ATAATCTACTGTCGATATATAAGAGCACCATTAAAAACTTATAGTCACCT
CCCAAATTATTTGATCTATCACACCCCATTATAAAACTG
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protein sequence of SMED30007801-orf-1

>SMED30007801-orf-1 ID=SMED30007801-orf-1|Name=SMED30007801-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=510bp
MQIFILEHSFYSMKADDFISTHLSRINEAVEDDEENIEDSSDVDYPLINL
KTGLKNEIIERTIKDLKKASNNCKKHIYHRASEFSHGVIGQNKSAQFELN
KAVNYFFSEQEYILEKMKKAQQKTLEDLQRIHFDRRQQMRMSYEYHNEEM
RQSLLKVKEEAQFLQRQEELEEAMRQKKMSINKLIVEQRNLLKETSPKLK
KLRRKKQPIEASMTDKNEKNDKNINIILEKNFNDKDKEINIIESYLPKSR
SFLQIKAIEVTKDILNPRTIERNMEDCLPKYDETLPVIVKLQNEDRKSIF
QVESKNKEIIINNEKKNIEIFEDLTDHNEDSSSYEETKPEDKFKTSKDVM
KNHKLMKEKEMREFLSLPFVAYRRNSAGRIIELDHPPQKKEFKEPSNKDK
YKIRKVLGDERNRYQESMVNLTKTTEKIIQEDIRKKNLLNAPKIEIKKEI
MYEGTKIGPQHWMKAFVSSNIPNDVDPSSTEAIIYCRYIRAPLKTYSHLP
NYLIYHTPL*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000034epidermis
PLANA:0000096ventral epidermis
PLANA:0000099neuron
PLANA:0000421tail
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 147..187