SMED30007799

Overview
NameSMED30007799
Smed IDSMED30007799
Length (bp)1489
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30007799 (SMED30007799) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30007799 (SMED30007799) in cells (dots) of each of the 12 neoblast clusters.

 

back to top

 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30007799 (SMED30007799) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30007799 (SMED30007799) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top

 

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020



SMED30007799

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 7

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
pigment cellSMED30007799SMESG000060623.1 SMESG000060620.1 SMESG000060617.1 SmedASXL_017644SmedAsxl_ww_GCZZ01PMID:29158443
He et al., 2017		whole organism asexual adult RNA-sequencing evidence
cephalic gangliaSMED30007799SMESG000060623.1 SMESG000060620.1 SMESG000060617.1 dd_Smed_v4_9376_1_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30007799SMESG000060623.1 SMESG000060620.1 SMESG000060617.1 dd_Smed_v4_9376_1_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30007799SMESG000060623.1 SMESG000060620.1 SMESG000060617.1 SMESG000060624.1 Contig48121newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30007799SMESG000060623.1 SMESG000060620.1 SMESG000060617.1 SMESG000060624.1 Contig48121uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30007799SMESG000060623.1 SMESG000060620.1 SMESG000060617.1 Contig21574newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30007799SMESG000060623.1 SMESG000060620.1 SMESG000060617.1 Contig21574uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30007799 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.009674:3830..12826 +7160
v31.008939:4223..14270 -7021
Homology
[Close]
BLAST of SMED30007799 vs. Planmine SMEST
Match: SMESG000060617.1 (SMESG000060617.1)

HSP 1 Score: 928.317 bits (2398), Expect = 0.000e+0
Identity = 470/472 (99.58%), Postives = 471/472 (99.79%), Query Frame = 2 
Query:   62 MKTFLWLTFTLVNLLTSQLLATSYIHQNVQGSLIENSQFKFSVYSNHCKGVIFYAIDSNGTILLIEVGNGTFINIKYLCVKSVRIRKEIINICNTHDCSKVFMVFHVELYLSQVKVICRSKSTLLQFENFIDFGNSFGHSNPYPRPIFRSPNETFIMMGNTGPYQGRGNLMYSDIQNQLSGCLIKFQFNDQVIKFIQNGSEFSKLCLNEYNGTMCNKELCTFQSISYDVDDCSLSALNPRYCVYDLPVFNGVKSSYSVNTVNRSDVLLRLEWKSLFPNNYCLLDIKFRNRTKALVHINSTGALLITVTHQQSIIKQKYVTQISFDRINILLVNFTYTKFIVKVSSKEKIDSFIDESIGEPISLILGDDSTGGICKRFQGAMKIRGEYLNAIGIPVNDQGFHILQIALMLSAAVIIVFIGILIFXXXXXXXXXXXXLPGLEESDLNLYTIVNTISLPIHIVNDSDLIYETVKE 1477
            MKTFLWLTFTLVNLLTSQLLATSYIHQNVQGSLIENSQFKFSVYSNHCKGVIFYAIDSNGTILLIEVGNGTFINIKYLCVKSVRIRKEIINICNTHDCSKVFMVFHVELYLSQVKVICRSKSTLLQFENFIDFGNSFGHSN YP+PIFRSPNETFIMMGNTGPYQGRGNLMYSDIQNQLSGCLIKFQFNDQVIKFIQNGSEFSKLCLNEYNGTMCNKELCTFQSISYDVDDCSLSALNPRYCVYDLPVFNGVKSSYSVNTVNRSDVLLRLEWKSLFPNNYCLLDIKFRNRTKALVHINSTGALLITVTHQQSIIKQKYVTQISFDRINILLVNFTYTKFIVKVSSKEKIDSFIDESIGEPISLILGDDSTGGICKRFQGAMKIRGEYLNAIGIPVNDQGFHILQIALMLSAAVIIVFIGILIFNKKKSVKKNANNLPGLEESDLNLYTIVNTISLPIHIVNDSDLIYETVKE
Sbjct:    1 MKTFLWLTFTLVNLLTSQLLATSYIHQNVQGSLIENSQFKFSVYSNHCKGVIFYAIDSNGTILLIEVGNGTFINIKYLCVKSVRIRKEIINICNTHDCSKVFMVFHVELYLSQVKVICRSKSTLLQFENFIDFGNSFGHSNLYPKPIFRSPNETFIMMGNTGPYQGRGNLMYSDIQNQLSGCLIKFQFNDQVIKFIQNGSEFSKLCLNEYNGTMCNKELCTFQSISYDVDDCSLSALNPRYCVYDLPVFNGVKSSYSVNTVNRSDVLLRLEWKSLFPNNYCLLDIKFRNRTKALVHINSTGALLITVTHQQSIIKQKYVTQISFDRINILLVNFTYTKFIVKVSSKEKIDSFIDESIGEPISLILGDDSTGGICKRFQGAMKIRGEYLNAIGIPVNDQGFHILQIALMLSAAVIIVFIGILIFNKKKSVKKNANNLPGLEESDLNLYTIVNTISLPIHIVNDSDLIYETVKE 472
[Close]
BLAST of SMED30007799 vs. Planmine SMEST
Match: SMESG000060617.1 (SMESG000060617.1)

HSP 1 Score: 914.45 bits (2362), Expect = 0.000e+0
Identity = 466/472 (98.73%), Postives = 467/472 (98.94%), Query Frame = 2 
Query:   62 MKTFLWLTFTLVNLLTSQLLATSYIHQNVQGSLIENSQFKFSVYSNHCKGVIFYAIDSNGTILLIEVGNGTFINIKYLCVKSVRIRKEIINICNTHDCSKVFMVFHVELYLSQVKVICRSKSTLLQFENFIDFGNSFGHSNPYPRPIFRSPNETFIMMGNTGPYQGRGNLMYSDIQNQLSGCLIKFQFNDQVIKFIQNGSEFSKLCLNEYNGTMCNKELCTFQSISYDVDDCSLSALNPRYCVYDLPVFNGVKSSYSVNTVNRSDVLLRLEWKSLFPNNYCLLDIKFRNRTKALVHINSTGALLITVTHQQSIIKQKYVTQISFDRINILLVNFTYTKFIVKVSSKEKIDSFIDESIGEPISLILGDDSTGGICKRFQGAMKIRGEYLNAIGIPVNDQGFHILQIALMLSAAVIIVFIGILIFXXXXXXXXXXXXLPGLEESDLNLYTIVNTISLPIHIVNDSDLIYETVKE 1477
            MKTFLWLTFTLVNLLTSQLLATSYIHQNVQGSLIENSQFKFSVYSNHCKGVIFYAIDSNGTILLIEVGNGTFINIKYLCVKSVRIRKEIINICNTHDCSKVFMVFHVELYLSQVKVICRSKSTLLQFENFIDFG    HSN YP+PIFRSPNETFIMMGNTGPYQGRGNLMYSDIQNQLSGCLIKFQFNDQVIKFIQNGSEFSKLCLNEYNGTMCNKELCTFQSISYDVDDCSLSALNPRYCVYDLPVFNGVKSSYSVNTVNRSDVLLRLEWKSLFPNNYCLLDIKFRNRTKALVHINSTGALLITVTHQQSIIKQKYVTQISFDRINILLVNFTYTKFIVKVSSKEKIDSFIDESIGEPISLILGDDSTGGICKRFQGAMKIRGEYLNAIGIPVNDQGFHILQIALMLSAAVIIVFIGILIFNKKKSVKKNANNLPGLEESDLNLYTIVNTISLPIHIVNDSDLIYETVKE
Sbjct:    1 MKTFLWLTFTLVNLLTSQLLATSYIHQNVQGSLIENSQFKFSVYSNHCKGVIFYAIDSNGTILLIEVGNGTFINIKYLCVKSVRIRKEIINICNTHDCSKVFMVFHVELYLSQVKVICRSKSTLLQFENFIDFG----HSNLYPKPIFRSPNETFIMMGNTGPYQGRGNLMYSDIQNQLSGCLIKFQFNDQVIKFIQNGSEFSKLCLNEYNGTMCNKELCTFQSISYDVDDCSLSALNPRYCVYDLPVFNGVKSSYSVNTVNRSDVLLRLEWKSLFPNNYCLLDIKFRNRTKALVHINSTGALLITVTHQQSIIKQKYVTQISFDRINILLVNFTYTKFIVKVSSKEKIDSFIDESIGEPISLILGDDSTGGICKRFQGAMKIRGEYLNAIGIPVNDQGFHILQIALMLSAAVIIVFIGILIFNKKKSVKKNANNLPGLEESDLNLYTIVNTISLPIHIVNDSDLIYETVKE 468
[Close]
BLAST of SMED30007799 vs. Planmine SMEST
Match: SMESG000060623.1 (SMESG000060623.1)

HSP 1 Score: 445.662 bits (1145), Expect = 1.010e-156
Identity = 220/245 (89.80%), Postives = 228/245 (93.06%), Query Frame = 2 
Query:   62 MKTFL-WLTFTLVNLLTSQLLATSYIHQNVQGSLIENSQFKFSVYSNHCKGVIFYAIDSNGTILLIEVGNGTFINIKYLCVKSVRIRKEIINICNTHDCSKVFMVFHVELYLSQVKVICRSKSTLLQFENFIDFGNSFGHSNPYPRPIFRSPNETFIMMGNTGPYQGRGNLMYSDIQNQLSGCLIKFQFNDQVIKFIQNGSEFSKLCLNEYNGTMCNKELCTFQSISYDVDDCSLSALNPRYCVY 793
            MKT L W+    VNLLTSQLLATSYIHQNVQGSLIENSQF FSVYSNHCKGVIFYAIDSNGTILLIEVGNGTFINIKYLCVKSVRIRKEIINICNTHDCSKVF+VFHVELYLSQVKVICRSKSTLLQFENFID    F HSN YP+PIFRSPNETFIMMGNTGPY+GRGNLMY   QNQL+GCLIKF+FNDQVI+FIQNGSEFSKLCLNEYNGT+C KELCTFQSISYDVDDCSLSALNPRYCVY
Sbjct:    1 MKTCLQWVALASVNLLTSQLLATSYIHQNVQGSLIENSQFNFSVYSNHCKGVIFYAIDSNGTILLIEVGNGTFINIKYLCVKSVRIRKEIINICNTHDCSKVFIVFHVELYLSQVKVICRSKSTLLQFENFID----FDHSNLYPKPIFRSPNETFIMMGNTGPYRGRGNLMYPSAQNQLNGCLIKFRFNDQVIEFIQNGSEFSKLCLNEYNGTICYKELCTFQSISYDVDDCSLSALNPRYCVY 241
[Close]
BLAST of SMED30007799 vs. Planmine SMEST
Match: SMESG000060620.1 (SMESG000060620.1)

HSP 1 Score: 327.405 bits (838), Expect = 2.329e-110
Identity = 166/192 (86.46%), Postives = 176/192 (91.67%), Query Frame = 2 
Query:  764 SALNPRYCVYDLPVFNGVKSSYSVNTVNRSDVLLRLEWKSLFPNNYCLLDIKFRNRTKALVHINSTGALLITVTHQQSIIKQKYVTQISFDRINILLVNFTYTKFIVKVSSKEKIDSFIDESIGEPISLILGDDSTGGICKRFQGAMKIRGEYLNAIGIPVNDQGFHILQ---IALMLSAAVIIV-FIGILI 1327
            +A N    V DLPVFNGVKSSYSVNTVNRSDVLLRLEWKSLFPNNYCLLD KFRNRTKALVHIN TGALLITVTHQQSIIKQKYVTQISFDRINILLVNFTYTKFIVKVSSKEKIDSFIDESIGEPISLILGDDSTGGICKRFQGAMKIRG+YLNAIGIPVNDQGF+ILQ   I+L+L  +++I+ F+  LI
Sbjct:    5 TASNLNVTVKDLPVFNGVKSSYSVNTVNRSDVLLRLEWKSLFPNNYCLLDFKFRNRTKALVHINRTGALLITVTHQQSIIKQKYVTQISFDRINILLVNFTYTKFIVKVSSKEKIDSFIDESIGEPISLILGDDSTGGICKRFQGAMKIRGKYLNAIGIPVNDQGFNILQVLIISLVLPLSILIIGFVAWLI 196
[Close]
BLAST of SMED30007799 vs. Planmine SMEST
Match: SMESG000060620.1 (SMESG000060620.1)

HSP 1 Score: 323.939 bits (829), Expect = 4.389e-109
Identity = 162/186 (87.10%), Postives = 175/186 (94.09%), Query Frame = 2 
Query:  782 YCVYDLPVFNGVKSSYSVNTVNRSDVLLRLEWKSLFPNNYCLLDIKFRNRTKALVHINSTGALLITVTHQQSIIKQKYVTQISFDRINILLVNFTYTKFIVKVSSKEKIDSFIDESIGEPISLILGDDSTGGICKRFQGAMKIRGEYLNAIGIPVNDQGFHILQ---IALMLSAAVIIV-FIGILI 1327
            + +++LPVFNGVKSSYSVNTVNRSDVLLRLEWKSLFPNNYCLLD KFRNRTKALVHIN TGALLITVTHQQSIIKQKYVTQISFDRINILLVNFTYTKFIVKVSSKEKIDSFIDESIGEPISLILGDDSTGGICKRFQGAMKIRG+YLNAIGIPVNDQGF+ILQ   I+L+L  +++I+ F+  LI
Sbjct:    3 HILFNLPVFNGVKSSYSVNTVNRSDVLLRLEWKSLFPNNYCLLDFKFRNRTKALVHINRTGALLITVTHQQSIIKQKYVTQISFDRINILLVNFTYTKFIVKVSSKEKIDSFIDESIGEPISLILGDDSTGGICKRFQGAMKIRGKYLNAIGIPVNDQGFNILQVLIISLVLPLSILIIGFVAWLI 188
The following BLAST results are available for this feature:
BLAST of SMED30007799 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30007799 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30007799 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30007799 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30007799 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30007799 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30007799 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30007799 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30007799 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30007799 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30007799 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30007799 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30007799 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30007799 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000060617.10.000e+099.58SMESG000060617.1[more]
SMESG000060617.10.000e+098.73SMESG000060617.1[more]
SMESG000060623.11.010e-15689.80SMESG000060623.1[more]
SMESG000060620.12.329e-11086.46SMESG000060620.1[more]
SMESG000060620.14.389e-10987.10SMESG000060620.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30007799 ID=SMED30007799|Name=SMED30007799|organism=Schmidtea mediterranea sexual|type=transcript|length=1489bp
TCTTCCGATCTCGTCCGTTTGCCATTTGATAATACTAGTGATAATTGAAG
GAATTTGTTGAATGAAGACCTTTTTGTGGCTGACCTTTACATTAGTCAAC
CTCCTAACGTCCCAACTTCTGGCCACGAGTTACATTCATCAGAATGTTCA
AGGAAGTCTCATAGAAAATTCTCAATTTAAATTCTCAGTGTACTCAAACC
ATTGCAAAGGAGTGATCTTTTATGCCATCGACTCGAATGGCACAATTTTA
TTGATTGAAGTTGGCAATGGCACTTTTATCAATATCAAGTATCTATGCGT
CAAATCGGTTAGAATTCGGAAGGAAATTATAAATATATGTAACACACATG
ACTGCTCGAAAGTGTTCATGGTGTTCCATGTGGAGCTTTATTTATCGCAA
GTCAAGGTCATATGTAGAAGCAAATCAACTCTTTTGCAGTTCGAAAATTT
CATTGATTTTGGTAATTCCTTTGGTCACTCGAACCCCTATCCTAGACCAA
TATTCCGCAGTCCGAATGAAACATTTATCATGATGGGAAATACCGGTCCA
TATCAAGGTCGTGGAAATTTGATGTACTCAGATATACAGAATCAATTAAG
CGGTTGTTTAATTAAATTCCAGTTCAATGATCAGGTTATTAAGTTCATTC
AAAATGGGAGTGAATTTTCAAAGTTATGCTTGAATGAATACAACGGCACA
ATGTGCAATAAGGAGTTGTGCACTTTTCAATCAATATCTTATGATGTTGA
CGATTGCTCCCTCTCGGCTCTGAATCCTCGGTATTGTGTATACGATTTGC
CTGTATTCAACGGAGTGAAGAGCTCATATTCAGTCAACACTGTCAACAGA
TCAGATGTTCTATTGCGCCTGGAATGGAAGAGTCTATTTCCAAACAACTA
TTGCCTGTTGGACATCAAGTTCAGGAATCGAACGAAAGCACTGGTGCACA
TCAATAGCACCGGTGCATTATTGATCACCGTCACGCATCAGCAATCAATT
ATTAAGCAGAAATATGTAACCCAAATATCATTTGACAGGATCAATATTTT
GCTGGTCAATTTCACCTACACAAAGTTCATTGTAAAGGTTTCGAGCAAGG
AGAAAATTGACAGTTTTATTGATGAATCAATTGGTGAACCAATTTCTCTG
ATCCTTGGAGATGATTCGACAGGAGGAATTTGTAAAAGATTTCAAGGAGC
AATGAAAATCCGAGGAGAATATTTGAATGCAATTGGGATTCCTGTAAATG
ATCAAGGATTCCACATTTTACAGATAGCTCTGATGTTGTCGGCCGCTGTT
ATAATTGTTTTCATAGGTATCTTGATTTTTAATAAGAAGAAATCTGTGAA
AAAGAATGCGAACAACCTCCCCGGATTGGAAGAAAGTGATTTAAATCTTT
ATACGATTGTGAACACTATTTCCTTGCCAATTCATATTGTGAATGATTCT
GATTTAATATATGAAACAGTTAAAGAATAGATGACTTCC
back to top

protein sequence of SMED30007799-orf-1

>SMED30007799-orf-1 ID=SMED30007799-orf-1|Name=SMED30007799-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=473bp
MKTFLWLTFTLVNLLTSQLLATSYIHQNVQGSLIENSQFKFSVYSNHCKG
VIFYAIDSNGTILLIEVGNGTFINIKYLCVKSVRIRKEIINICNTHDCSK
VFMVFHVELYLSQVKVICRSKSTLLQFENFIDFGNSFGHSNPYPRPIFRS
PNETFIMMGNTGPYQGRGNLMYSDIQNQLSGCLIKFQFNDQVIKFIQNGS
EFSKLCLNEYNGTMCNKELCTFQSISYDVDDCSLSALNPRYCVYDLPVFN
GVKSSYSVNTVNRSDVLLRLEWKSLFPNNYCLLDIKFRNRTKALVHINST
GALLITVTHQQSIIKQKYVTQISFDRINILLVNFTYTKFIVKVSSKEKID
SFIDESIGEPISLILGDDSTGGICKRFQGAMKIRGEYLNAIGIPVNDQGF
HILQIALMLSAAVIIVFIGILIFNKKKSVKKNANNLPGLEESDLNLYTIV
NTISLPIHIVNDSDLIYETVKE*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002075pigment cell
PLANA:0003116parenchymal cell
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..21
score: 0.816
NoneNo IPR availableTMHMMTMhelixcoord: 401..423