SMED30007786

Overview
NameSMED30007786
Smed IDSMED30007786
Length (bp)1004
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30007786 (SMED30007786) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30007786 (SMED30007786) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30007786 (SMED30007786) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30007786 (SMED30007786) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30007786

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 1

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
parenchymal cellSMED30007786SMESG000042028.1 dd_Smed_v4_7391_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30007786 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.004130:35479..40402 -2961
Homology
BLAST of SMED30007786 vs. Ensembl Zebrafish
Match: si:ch73-92i20.1 (si:ch73-92i20.1 [Source:ZFIN;Acc:ZDB-GENE-070705-270])

HSP 1 Score: 55.8398 bits (133), Expect = 1.849e-9
Identity = 39/116 (33.62%), Postives = 61/116 (52.59%), Query Frame = 2
Query:   47 ILMEGYLTKSPPKSIEDFIQIKR--WKQRYFELKNINQKF---ILEYKKTKASKTLKGSIDLSNLEYLVNN--FPFIRQRRN--LFAIKIEDNEKRRIFYFNAKSINEFNNWIQNF 367
            ++  G+L KSPP+      ++KR  W++R+F L+         +LEY ++K+S+    +IDL   E  +     P  RQ +N  LF +K       RIFY  AK+  E N+W+QN 
Sbjct:    6 VVCTGWLIKSPPEK-----KLKRFSWRKRWFVLRRGRMSGNPDVLEYYRSKSSRKPIRTIDLQECEVTIEAEVRPTKRQHQNQHLFVVKTAT----RIFYLLAKTAEEMNDWVQNI 112          
BLAST of SMED30007786 vs. TrEMBL
Match: A0A3R7GCP4 (PH domain-containing protein (Fragment) OS=Clonorchis sinensis OX=79923 GN=CSKR_7903s PE=4 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 8.839e-8
Identity = 39/134 (29.10%), Postives = 70/134 (52.24%), Query Frame = 2
Query:   38 QNMILMEGYLTKSPPKSIED---FIQI-KRWKQRYFELKNINQK----FILEYKKTKASKTLKGSIDLSNLEYLVNNFPFIRQRRNLFAIKIEDNEKRRIFYFNAKSINEFNNWIQNFISLLNLTASKMTLDRA 415
            Q  I++ G+L KSPP S+E+   F  +  RW+QR+  L  +  +       EY K K    LKG +DL N E + +++  I +  N+F+I  +   K RI+YF+A      ++W+++ + +     +   ++ A
Sbjct:  118 QKEIIISGFLIKSPP-SVEENRPFSSLWDRWRQRFCVLYKVRSRDTTGIFFEYYKDKQCHKLKGHVDLKNCECIADDY-QIGKWLNVFSIHTKHKGKSRIYYFSAPDPQSMSDWVRHLVEVKGFVDNSQPVEPA 249          
BLAST of SMED30007786 vs. TrEMBL
Match: E9FU37 (PH domain-containing protein (Fragment) OS=Daphnia pulex OX=6669 GN=DAPPUDRAFT_27812 PE=4 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 1.563e-7
Identity = 34/116 (29.31%), Postives = 60/116 (51.72%), Query Frame = 2
Query:   47 ILMEGYLTKSPPKSIEDFIQIKRWKQRYFELKNINQ---KFILEYKKTKASKTLKGSIDLSNLEYLVNNFPFIRQRRNLFAIKIEDNEKRRIFYFNAKSINEFNNWIQNFISLLNL 385
            I+ EG+L KSPP      I   +W++R+F LK+  +   ++ LEY   +  + LKG IDL   E  V++   I  R+  +A   +    +R+++  A S ++ N+W+     +  L
Sbjct:    8 IVHEGWLVKSPPTK---RIWRAKWRRRWFVLKHSGELPGQYFLEYYTDRTCRKLKGKIDLDQCEQ-VDSGLTIESRKQRYAHMFDIRTPKRVYFLAADSESDMNSWVGCICHVCGL 119          
BLAST of SMED30007786 vs. TrEMBL
Match: A0A2P2IDA9 (GRB2-associated-binding protein 2-like (Fragment) OS=Hirondellea gigas OX=1518452 PE=2 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 2.776e-7
Identity = 37/111 (33.33%), Postives = 59/111 (53.15%), Query Frame = 2
Query:   47 ILMEGYLTKSPPKSIEDFIQIKRWKQRYFELKN--INQKFILEYKKTKASKTLKGSIDLSNLEYLVNNFPFIRQRRN-----LFAIKIEDNEKRRIFYFNAKSINEFNNWI 358
            I+ EG+LTKSPP   +  +++ RW+ R+F L++  +  +++LEY      K LKG IDL   E + +   F  Q+       +F I+       RI+Y   +S  E NNW+
Sbjct:    8 IVHEGWLTKSPPP--KRLLKV-RWRTRWFVLRSGELPGQYLLEYYVDHTRKKLKGKIDLDQCEQVDSGIVFSSQKETDDNNRMFDIRTPS----RIYYLRCQSEAEMNNWV 111          
BLAST of SMED30007786 vs. TrEMBL
Match: A0A4S2M9X8 (PH domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_002563 PE=4 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 7.817e-7
Identity = 40/147 (27.21%), Postives = 71/147 (48.30%), Query Frame = 2
Query:   38 QNMILMEGYLTKSPPKSIED---FIQI--------------KRWKQRYFELKNINQK----FILEYKKTKASKTLKGSIDLSNLEYLVNNFPFIRQRRNLFAIKIEDNEKRRIFYFNAKSINEFNNWIQNFISLLNLTASKMTLDRA 415
            Q  I++ G+L KSPP S+E+   F  +              KRW+QR+  L  +  +       EY K K    LKG +DL N E + +++  I +  N+F+I  +   K RI+YF+A      ++W+++ + +     +   ++ A
Sbjct:   12 QKEIIISGFLIKSPP-SVEENRPFSSLWDLGCGGLGSPLIKKRWRQRFCVLYKVRSRDTTGIFFEYYKDKQCHKLKGHVDLKNCECIADDY-QIGKWLNVFSIHTKHKGKSRIYYFSAPDPQSMSDWVRHLVEVKGFVDNSQPVEPA 156          
BLAST of SMED30007786 vs. TrEMBL
Match: A0A0P5P399 (GRB2-associated-binding protein OS=Daphnia magna OX=35525 PE=4 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 1.971e-6
Identity = 39/134 (29.10%), Postives = 65/134 (48.51%), Query Frame = 2
Query:   47 ILMEGYLTKSPPKSIEDFIQIKRWKQRYFELKNINQ---KFILEYKKTKASKTLKGSIDLSNLEYLVNNFPFIRQRRNLFAIKIEDNEKRRIFYFNAKSINEFNNWIQNFISLLNL---------TASKMTLDR 412
            I++EG+L KSPP      I   +W++R+F LK+  +   ++ LEY   K  + LKG IDL   E + +    I  R+  +A   +    +R+++  A S  + N+W+     +  L         T S +TL R
Sbjct:    8 IVLEGWLVKSPPTK---RIWRAKWRRRWFVLKHSGELPGQYFLEYYTDKTCRKLKGKIDLDQCEQVDSGL-TIESRKQRYAHMFDIRTPKRVYFLAADSEFDMNSWVGCICHVCGLKVFYRDDEDTGSSLTLTR 137          
BLAST of SMED30007786 vs. Ensembl Cavefish
Match: si:ch73-92i20.1 (si:ch73-92i20.1 [Source:ZFIN;Acc:ZDB-GENE-070705-270])

HSP 1 Score: 56.9954 bits (136), Expect = 8.812e-9
Identity = 38/124 (30.65%), Postives = 63/124 (50.81%), Query Frame = 2
Query:   47 ILMEGYLTKSPPKSIEDFIQIKR--WKQRYFELKNINQKF---ILEYKKTKASKTLKGSIDLSNLEYLVNN--FPFIRQRRN--LFAIKIEDNEKRRIFYFNAKSINEFNNWIQNFISLLNLTA 391
            ++  G+L KSPP+      ++KR  W++R+F L+         +LEY ++K+S+    +IDL   E  V    +P  R   N  LF +K  +    R+FY  AK+  E N W++N   +   +A
Sbjct:    6 VVCTGWLVKSPPEK-----KLKRYSWRKRWFVLRRGRMSGDPDVLEYFRSKSSRKPIRTIDLQECEVTVQTEVWPIKRHPPNQHLFVVKTAN----RVFYLLAKTAEEMNCWVRNIGQICTFSA 120          
BLAST of SMED30007786 vs. Ensembl Medaka
Match: gab2 (GRB2 associated binding protein 2 [Source:NCBI gene;Acc:101169961])

HSP 1 Score: 48.9062 bits (115), Expect = 5.751e-6
Identity = 51/181 (28.18%), Postives = 75/181 (41.44%), Query Frame = 2
Query:   47 ILMEGYLTKSPPKSIEDFIQIKRWKQRYFELKN---INQKFILEYKKTKASKTLKGSIDLSNLEYLVNNFPFIR---QRRNLFAIKIEDNEKRRIFYFNAKSINEFNNWIQNFISLLNLTASKMTLD-------RAKELILAGFFAKSYLKDEKEYSTMFMNSLNIFIQKKTTDDTISHRH 550
            I+ +G+L KSPP   E  ++   WK+R+F L++        +LEY K   SK     IDL   E +     F R   Q   +F IK  D    R FY  A++  E N W+++   L     +  T D       R+      G  A   L  E++ S    +S  +     T D  + H H
Sbjct:    6 IIFQGWLRKSPP---EKKLRRYAWKKRWFILRSGRMSGDPDVLEYYKNDHSKKPIRVIDLHCCEQVDAGLTFKRKEFQDSFVFDIKTSD----RTFYLVAETEEEMNKWVRSICQLCGFNQADDTHDGRLLNMPRSVGPDATGSMAP--LSSERKSSAPIHSSQPVLF---TFDVPVRHSH 174          
BLAST of SMED30007786 vs. Planmine SMEST
Match: SMESG000042028.1 (SMESG000042028.1)

HSP 1 Score: 517.694 bits (1332), Expect = 0.000e+0
Identity = 274/275 (99.64%), Postives = 275/275 (100.00%), Query Frame = 2
Query:   35 MQNMILMEGYLTKSPPKSIEDFIQIKRWKQRYFELKNINQKFILEYKKTKASKTLKGSIDLSNLEYLVNNFPFIRQRRNLFAIKIEDNEKRRIFYFNAKSINEFNNWIQNFISLLNLTASKMTLDRAKELILAGFFAKSYLKDEKEYSTMFMNSLNIFIQKKTTDDTISHRHECRKYYTTTNQYDETCLPIRCXXXXXXXXXXXXXXXXXXXXFIHETAENVQDHYMDLNQLEFKSDISKPRRKILPKDEPVEYCEIDAARTQAMYELNKRLDSI 859
            MQNMILMEGYLTKSPPKSIEDFIQIKRWKQRYFELKNINQKFILEYKKTKASKTLKGSIDLSNLEYLVNNFPFIRQRRNLFAIKIEDN+KRRIFYFNAKSINEFNNWIQNFISLLNLTASKMTLDRAKELILAGFFAKSYLKDEKEYSTMFMNSLNIFIQKKTTDDTISHRHECRKYYTTTNQYDETCLPIRCTSALSTDSNSDSSSDETLTEFIHETAENVQDHYMDLNQLEFKSDISKPRRKILPKDEPVEYCEIDAARTQAMYELNKRLDSI
Sbjct:    1 MQNMILMEGYLTKSPPKSIEDFIQIKRWKQRYFELKNINQKFILEYKKTKASKTLKGSIDLSNLEYLVNNFPFIRQRRNLFAIKIEDNKKRRIFYFNAKSINEFNNWIQNFISLLNLTASKMTLDRAKELILAGFFAKSYLKDEKEYSTMFMNSLNIFIQKKTTDDTISHRHECRKYYTTTNQYDETCLPIRCTSALSTDSNSDSSSDETLTEFIHETAENVQDHYMDLNQLEFKSDISKPRRKILPKDEPVEYCEIDAARTQAMYELNKRLDSI 275          
BLAST of SMED30007786 vs. Planmine SMEST
Match: SMESG000042332.1 (SMESG000042332.1)

HSP 1 Score: 51.9878 bits (123), Expect = 3.182e-7
Identity = 45/122 (36.89%), Postives = 66/122 (54.10%), Query Frame = 2
Query:   47 ILMEGYLTKSPP-KSIEDFIQI-KRWKQRYFEL-KNINQKFILE--YKKTKA---SKTLKGSIDLSNLEYLVNNFPFIRQRRNLFAIKIEDNEK-RRIFYFNAKSINEFNNWIQNFISLLNL 385
            I+ EG L KSPP KS   F  I KRW++RYF L KNI++   +   Y K+K    SK+L GSI+L N   L  +      + N+F+I+  D++   R +Y +A S      W+   ++ L L
Sbjct:   13 IIYEGILKKSPPLKSKSLFSMIAKRWRKRYFVLFKNIDKPHDVHLLYFKSKPLPDSKSL-GSINLENFRSLAFDVGKKLNKTNVFSIQTTDDKGNNRDYYLSANSFEIMKTWVDKLVACLGL 133          
The following BLAST results are available for this feature:
BLAST of SMED30007786 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007786 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007786 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007786 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
si:ch73-92i20.11.849e-933.62si:ch73-92i20.1 [Source:ZFIN;Acc:ZDB-GENE-070705-2... [more]
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BLAST of SMED30007786 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007786 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007786 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007786 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A3R7GCP48.839e-829.10PH domain-containing protein (Fragment) OS=Clonorc... [more]
E9FU371.563e-729.31PH domain-containing protein (Fragment) OS=Daphnia... [more]
A0A2P2IDA92.776e-733.33GRB2-associated-binding protein 2-like (Fragment) ... [more]
A0A4S2M9X87.817e-727.21PH domain-containing protein OS=Opisthorchis felin... [more]
A0A0P5P3991.971e-629.10GRB2-associated-binding protein OS=Daphnia magna O... [more]
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BLAST of SMED30007786 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
si:ch73-92i20.18.812e-930.65si:ch73-92i20.1 [Source:ZFIN;Acc:ZDB-GENE-070705-2... [more]
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BLAST of SMED30007786 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007786 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007786 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007786 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1
Match NameE-valueIdentityDescription
gab25.751e-628.18GRB2 associated binding protein 2 [Source:NCBI gen... [more]
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BLAST of SMED30007786 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000042028.10.000e+099.64SMESG000042028.1[more]
SMESG000042332.13.182e-736.89SMESG000042332.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30007786 ID=SMED30007786|Name=SMED30007786|organism=Schmidtea mediterranea sexual|type=transcript|length=1004bp
CTTTAATGAGAACATTTTAAATATTTAATTTAATATGCAGAATATGATTT
TAATGGAAGGTTATTTAACGAAATCACCACCAAAGTCGATTGAAGACTTT
ATCCAAATTAAAAGATGGAAACAAAGATATTTCGAATTGAAAAATATCAA
TCAGAAATTTATATTGGAATATAAAAAAACCAAAGCAAGTAAAACATTGA
AAGGATCGATAGATCTGAGTAATTTGGAATATTTGGTAAATAATTTCCCA
TTCATTCGGCAAAGACGAAATTTATTTGCTATAAAAATCGAGGACAATGA
AAAACGTCGTATATTTTATTTCAATGCAAAATCAATAAATGAATTTAATA
ATTGGATACAAAATTTTATTTCTCTTTTAAATTTGACGGCATCAAAAATG
ACTCTCGATAGAGCCAAAGAATTAATTTTAGCAGGCTTTTTCGCAAAATC
TTATCTTAAAGATGAGAAAGAATACAGTACCATGTTTATGAACAGTTTAA
ACATTTTCATCCAAAAAAAAACAACAGATGATACTATTTCGCATAGACAC
GAATGTCGAAAATATTACACAACGACAAACCAATATGATGAAACGTGCCT
ACCAATCCGTTGTACAAGCGCACTGTCAACAGATAGTAACAGTGATTCTT
CATCCGATGAAACTTTGACGGAATTTATACACGAAACTGCTGAAAATGTC
CAGGATCATTATATGGACCTGAATCAGCTGGAGTTCAAATCTGACATTTC
TAAGCCAAGGAGAAAGATTTTACCTAAAGATGAACCTGTGGAGTATTGTG
AAATTGACGCAGCACGTACTCAAGCAATGTATGAATTAAATAAGAGACTA
GATTCTATATGATTTTATTTTTCTTTGAGTTTAATATTCAGAATATCCCA
AATCGTAATTTATTGTTTTTAATTTTCTCATTTAAAATCAGAAGTTTTTA
TTTTTGGTTTGTTTTTCCGAATTATTTTCATATAAATAATTTCGCTCAAT
TGCA
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protein sequence of SMED30007786-orf-1

>SMED30007786-orf-1 ID=SMED30007786-orf-1|Name=SMED30007786-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=276bp
MQNMILMEGYLTKSPPKSIEDFIQIKRWKQRYFELKNINQKFILEYKKTK
ASKTLKGSIDLSNLEYLVNNFPFIRQRRNLFAIKIEDNEKRRIFYFNAKS
INEFNNWIQNFISLLNLTASKMTLDRAKELILAGFFAKSYLKDEKEYSTM
FMNSLNIFIQKKTTDDTISHRHECRKYYTTTNQYDETCLPIRCTSALSTD
SNSDSSSDETLTEFIHETAENVQDHYMDLNQLEFKSDISKPRRKILPKDE
PVEYCEIDAARTQAMYELNKRLDSI*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0003116parenchymal cell
Vocabulary: INTERPRO
TermDefinition
IPR001849PH_domain
IPR011993PH-like_dom_sf
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001849Pleckstrin homology domainSMARTSM00233PH_updatecoord: 5..118
e-value: 1.3E-12
score: 57.9
IPR001849Pleckstrin homology domainPFAMPF00169PHcoord: 6..114
e-value: 5.2E-13
score: 49.4
IPR001849Pleckstrin homology domainPROSITEPS50003PH_DOMAINcoord: 4..116
score: 14.663
IPR011993PH-like domain superfamilyGENE3DG3DSA:2.30.29.30coord: 1..118
e-value: 2.3E-16
score: 61.7
NoneNo IPR availablePANTHERPTHR45960FAMILY NOT NAMEDcoord: 5..118
NoneNo IPR availableSUPERFAMILYSSF50729PH domain-likecoord: 4..115