SMED30007769

Overview
NameSMED30007769
Smed IDSMED30007769
Length (bp)903
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30007769 (SMED30007769) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30007769 (SMED30007769) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30007769 (SMED30007769) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30007769 (SMED30007769) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30007769

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 1

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
muscle cellSMED30007769SMESG000033620.1 dd_Smed_v4_14187_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of SMED30007769 vs. TrEMBL
Match: A0A1I8IXF1 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 1.177e-6
Identity = 47/191 (24.61%), Postives = 83/191 (43.46%), Query Frame = 1 
Query:  247 KLYTKWKKDRKKQNQYFTDDL--FRAFYIEDLYSRRVDCFY-SLLMF----SNFNDNILEFIRKCKNVTSFGCGAAPEVLAYIKFVRGQLRCSKLNLRFIGYDSIGEWDIYIDVLKG-HLDNRVTFDFKKLTIDTNYISEMSQGGACLMSYSHWS-RFPDIWELLKTKFHLIIVLDVKDKLMQSKMQKCGY 792
            +L+  WK    K +  F   L  +RA Y  +L+  R+   + SL       S   D + E   + + V S GCG  P V A +  +R     ++  ++ IG D    W  Y+  + G         +F    ++   I ++      +MSY+  +   P  WE ++ KF  I+VLD +   +  ++Q+ G+
Sbjct:   66 RLFNTWKDAPDKLDVSFMYKLSGWRAVYTLNLFRSRIQTVWLSLRQLMSPKSGIADQLTEIFGRTQRVVSIGCGPGPCVAAMLIVLRECFGITQY-VKLIGIDQFIGWGPYVVSMNGVEAAGPSGVEFWHERVEEATIDKLPNANVAIMSYTDAAVHTPKFWETMRLKFAFILVLDQRKGALSRELQRQGF 255
[Close]
BLAST of SMED30007769 vs. TrEMBL
Match: A0A267GR90 (Uncharacterized protein (Fragment) OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig000056g2 PE=4 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 1.222e-6
Identity = 47/191 (24.61%), Postives = 83/191 (43.46%), Query Frame = 1 
Query:  247 KLYTKWKKDRKKQNQYFTDDL--FRAFYIEDLYSRRVDCFY-SLLMF----SNFNDNILEFIRKCKNVTSFGCGAAPEVLAYIKFVRGQLRCSKLNLRFIGYDSIGEWDIYIDVLKG-HLDNRVTFDFKKLTIDTNYISEMSQGGACLMSYSHWS-RFPDIWELLKTKFHLIIVLDVKDKLMQSKMQKCGY 792
            +L+  WK    K +  F   L  +RA Y  +L+  R+   + SL       S   D + E   + + V S GCG  P V A +  +R     ++  ++ IG D    W  Y+  + G         +F    ++   I ++      +MSY+  +   P  WE ++ KF  I+VLD +   +  ++Q+ G+
Sbjct:  127 RLFNTWKDAPDKLDVSFMYKLSGWRAVYTLNLFRSRIQTVWLSLRQLMSPKSGIADQLTEIFGRTQRVVSIGCGPGPCVAAMLIVLRECFGITQY-VKLIGIDQFIGWGPYVVSMNGVEAAGPSGVEFWHERVEEATIDKLPNANVAIMSYTDAAVHTPKFWETMRLKFAFILVLDQRKGALSRELQRQGF 316
[Close]
BLAST of SMED30007769 vs. TrEMBL
Match: A0A267G0K6 (Uncharacterized protein (Fragment) OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig033796g1 PE=4 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 1.222e-6
Identity = 47/191 (24.61%), Postives = 83/191 (43.46%), Query Frame = 1 
Query:  247 KLYTKWKKDRKKQNQYFTDDL--FRAFYIEDLYSRRVDCFY-SLLMF----SNFNDNILEFIRKCKNVTSFGCGAAPEVLAYIKFVRGQLRCSKLNLRFIGYDSIGEWDIYIDVLKG-HLDNRVTFDFKKLTIDTNYISEMSQGGACLMSYSHWS-RFPDIWELLKTKFHLIIVLDVKDKLMQSKMQKCGY 792
            +L+  WK    K +  F   L  +RA Y  +L+  R+   + SL       S   D + E   + + V S GCG  P V A +  +R     ++  ++ IG D    W  Y+  + G         +F    ++   I ++      +MSY+  +   P  WE ++ KF  I+VLD +   +  ++Q+ G+
Sbjct:  130 RLFNTWKDAPDKLDVSFMYKLSGWRAVYTLNLFRSRIQTVWLSLRQLMSPKSGIADQLTEIFGRTQRVVSIGCGPGPCVAAMLIVLRECFGITQY-VKLIGIDQFIGWGPYVVSMNGVEAAGPSGVEFWHERVEEATIDKLPNANVAIMSYTDAAVHTPKFWETMRLKFAFILVLDQRKGALSRELQRQGF 319
[Close]
BLAST of SMED30007769 vs. TrEMBL
Match: A0A267FKL1 (Uncharacterized protein (Fragment) OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig009940g3 PE=4 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 1.288e-6
Identity = 49/210 (23.33%), Postives = 93/210 (44.29%), Query Frame = 1 
Query:  247 KLYTKWKKDRKKQNQYFTDDL--FRAFYIEDLYSRRVD-CFYSLLMF----SNFNDNILEFIRKCKNVTSFGCGAAPEVLAYIKFVRGQLRCSKLNLRFIGYDSIGEWDIYIDVLKGHLD-NRVTFDFKKLTIDTNYISEMSQGGACLMSYSHWS-RFPDIWELLKTKFHLIIVLDVKDKLMQSKMQKCGYNSKYFTDTNCNESAKQFYY 849
            KL+  WK    K +  F   L  +RA Y  +L+  R+   ++SL       S     + E + + + + S GCG  P + + +  +R  +  +K  ++ IG D    W  Y+  +    +    + +F    ++   I  +      +MSY+  +   P  WE ++ KF  I+VLD +   +  ++Q+ G+   +F +     S + FYY
Sbjct:   91 KLFNSWKNAPDKLDVSFMYKLSGWRAVYTLNLFRSRIQTVWFSLKQLLSSQSGIGPQLAEILNRTQRIVSIGCGPGPCIASILIALRDYVGFTKY-VKLIGIDQFIGWGPYVTSMNSVEEAGASSVEFWHERVEEATIDSLPNADVAIMSYTDAAIHTPKFWETMRMKFAFILVLDQRKGALSRELQRQGFG--HF-EYEFKGSKRVFYY 296
[Close]
BLAST of SMED30007769 vs. TrEMBL
Match: A0A267G8H2 (Uncharacterized protein (Fragment) OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig009940g1 PE=4 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 1.288e-6
Identity = 49/210 (23.33%), Postives = 93/210 (44.29%), Query Frame = 1 
Query:  247 KLYTKWKKDRKKQNQYFTDDL--FRAFYIEDLYSRRVD-CFYSLLMF----SNFNDNILEFIRKCKNVTSFGCGAAPEVLAYIKFVRGQLRCSKLNLRFIGYDSIGEWDIYIDVLKGHLD-NRVTFDFKKLTIDTNYISEMSQGGACLMSYSHWS-RFPDIWELLKTKFHLIIVLDVKDKLMQSKMQKCGYNSKYFTDTNCNESAKQFYY 849
            KL+  WK    K +  F   L  +RA Y  +L+  R+   ++SL       S     + E + + + + S GCG  P + + +  +R  +  +K  ++ IG D    W  Y+  +    +    + +F    ++   I  +      +MSY+  +   P  WE ++ KF  I+VLD +   +  ++Q+ G+   +F +     S + FYY
Sbjct:   90 KLFNSWKNAPDKLDVSFMYKLSGWRAVYTLNLFRSRIQTVWFSLKQLLSSQSGIGPQLAEILNRTQRIVSIGCGPGPCIASILIALRDYVGFTKY-VKLIGIDQFIGWGPYVTSMNSVEEAGASSVEFWHERVEEATIDSLPNADVAIMSYTDAAIHTPKFWETMRMKFAFILVLDQRKGALSRELQRQGFG--HF-EYEFKGSKRVFYY 295
[Close]
BLAST of SMED30007769 vs. Planmine SMEST
Match: SMESG000033630.1 (SMESG000033630.1)

HSP 1 Score: 302.753 bits (774), Expect = 1.072e-104
Identity = 141/158 (89.24%), Postives = 149/158 (94.30%), Query Frame = 1 
Query:  388 NDNILEFIRKCKNVTSFGCGAAPEVLAYIKFVRGQLRCSKLNLRFIGYDSIGEWDIYIDVLKGHLDNRVTFDFKKLTIDTNYISEMSQGGACLMSYSHWSRFPDIWELLKTKFHLIIVLDVKDKLMQSKMQKCGYNSKYFTDTNCNESAKQFYYYFTQ 861
            +++I EFI+ C+NV S GCGAAPEVLAYIKF+R  L C++LNL FIGYDSIGEWDIYIDVLKGHLDNRVT DFKKLTIDTNYISEMSQGGACLMSYSHWSRFPDIWELLKTKFHLIIVLDVKDKLMQSKMQKCGYNSKYFTDTNCNESAKQFYYYFTQ
Sbjct:    6 HEDIKEFIKTCENVASLGCGAAPEVLAYIKFLRCHLECTRLNLNFIGYDSIGEWDIYIDVLKGHLDNRVTLDFKKLTIDTNYISEMSQGGACLMSYSHWSRFPDIWELLKTKFHLIIVLDVKDKLMQSKMQKCGYNSKYFTDTNCNESAKQFYYYFTQ 163
[Close]
BLAST of SMED30007769 vs. Planmine SMEST
Match: SMESG000033621.1 (SMESG000033621.1)

HSP 1 Score: 235.343 bits (599), Expect = 4.566e-78
Identity = 117/165 (70.91%), Postives = 129/165 (78.18%), Query Frame = 1 
Query:  373 MFSNFNDNILEFIRKCKNVTSFGCGAAPEVLAYIKFVRGQLRCSKLNLRFIGYDSIGEWDIYIDVLKGHLDNRVTFDFKKLTIDTNYISEMSQGGACLMSYSHWSRFPDIWELLKTKFHLIIVLDVKDKLMQSKMQKCGYNSKYFTDTNCNE--SAKQFYYYFTQ 861
            MFSNFNDNILEFIRKCKNVTSFGCGAAPEVLAYIKFVRGQLRCSKLNLRFIGYDSIG WDIYID L+ HLDNRVTFDFK  T+D   +S M+Q G CLMSY HW  F +IWE LK+KF+LIIVLDV  +     ++  GY  ++F D N  E  S K FYYYF Q
Sbjct:    1 MFSNFNDNILEFIRKCKNVTSFGCGAAPEVLAYIKFVRGQLRCSKLNLRFIGYDSIGGWDIYIDALRRHLDNRVTFDFKNETVDRYSVSRMTQRGVCLMSYPHWDGFENIWESLKSKFNLIIVLDVNVRRFHRTLRNSGYYFQFFND-NFEEFSSPKSFYYYFEQ 164
[Close]
BLAST of SMED30007769 vs. Planmine SMEST
Match: SMESG000049126.1 (SMESG000049126.1)

HSP 1 Score: 115.546 bits (288), Expect = 2.138e-30
Identity = 64/204 (31.37%), Postives = 105/204 (51.47%), Query Frame = 1 
Query:  253 YTKWKKDRKKQ--NQYFTDDLFRAFYIEDLYSRRVDCFYSLLMFSNFNDNILEFIRKCKNVTSFGCGAAPEVLAYIKFVRGQLRCSKLNLRFIGYDSIGEWDIYIDVLKGHLDNRVTFDFKKLTIDTNYISEMSQGGACLMSYSHWSRFPDIWELLKTKFHLIIVLDVKDKLMQSKMQKCGYNSKYFTDTNCNESAKQFYYYFT 858
            +  W+ +  K    QY++D  F   Y++ L+  RV  FY +L+  +  + +   + +  ++TSFGCG  PE++AY+ F+R QL   K  L F   D I  W  ++DV     D  +T  F+   +  NY+  +   G C+MSY     F +IWE +K KFHLII+LD     +   ++  G+  K+F      + +K + YY +
Sbjct:   24 FRNWQDNPNKHVVTQYYSDFNFGLCYVDKLFRSRVQSFYQVLLDISCIEEVKRRMLEDLSITSFGCGPGPEIVAYVSFMRSQLDVKK-RLDFTAVDKIAYWKYFLDVTP-ECDRNITITFQNSILSENYLQRIDNQGICIMSYPEAVNFGNIWESMKKKFHLIIILDQSKSQLHESLRFAGFTIKFFQ----FKGSKSYAYYLS 221
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BLAST of SMED30007769 vs. Planmine SMEST
Match: SMESG000049128.1 (SMESG000049128.1)

HSP 1 Score: 113.235 bits (282), Expect = 7.573e-29
Identity = 65/205 (31.71%), Postives = 105/205 (51.22%), Query Frame = 1 
Query:  262 WKKDRKKQ--NQYFTDDLFRAFYIEDLYSRRVDCFYSLLMFSNFNDNILEFIRKCKNVTSFGCGAAPEVLAYIKFVRGQLRCSKLNLRFIGYDSIGEWDIYIDVLKGHLDNRVTFDFKKLTIDTNYISEMSQGGACLMSYSHWSRFPDIWELLKTKFHLIIVLDVKDKLMQSKMQKCGYNSKYFTDTNCN---ESAKQFYYYFTQ 861
            W+    K     Y++D  F   Y++ LY  RV+ FY +L     N  +   +++  ++TSFGCG  PE+ AYI F+R +L   K  L  +  D IG W  +++V+    D+ +T  F+  T+  +Y+  +   G C+MSY     F DIW+L+  KF LII+LD   + +   +++ G+       T CN      K + YY T+
Sbjct:   27 WQNQPNKHLVTYYYSDYNFGLCYVQKLYGSRVESFYEVLFDITTNLEVELEMKRNLSITSFGCGPGPEIAAYISFLRSELYVEK-RLNVLAVDKIGYWRDFVNVIT-KCDSNITLAFQNATLSASYLLGIRDQGVCIMSYPEAVNFGDIWDLMIKKFRLIIILDQSKQQLHCSLRETGF-------TICNFTFRGQKSYAYYLTK 222
[Close]
BLAST of SMED30007769 vs. Planmine SMEST
Match: SMESG000049128.1 (SMESG000049128.1)

HSP 1 Score: 112.849 bits (281), Expect = 1.002e-28
Identity = 65/205 (31.71%), Postives = 105/205 (51.22%), Query Frame = 1 
Query:  262 WKKDRKKQ--NQYFTDDLFRAFYIEDLYSRRVDCFYSLLMFSNFNDNILEFIRKCKNVTSFGCGAAPEVLAYIKFVRGQLRCSKLNLRFIGYDSIGEWDIYIDVLKGHLDNRVTFDFKKLTIDTNYISEMSQGGACLMSYSHWSRFPDIWELLKTKFHLIIVLDVKDKLMQSKMQKCGYNSKYFTDTNCN---ESAKQFYYYFTQ 861
            W+    K     Y++D  F   Y++ LY  RV+ FY +L     N  +   +++  ++TSFGCG  PE+ AYI F+R +L   K  L  +  D IG W  +++V+    D+ +T  F+  T+  +Y+  +   G C+MSY     F DIW+L+  KF LII+LD   + +   +++ G+       T CN      K + YY T+
Sbjct:   34 WQNQPNKHLVTYYYSDYNFGLCYVQKLYGSRVESFYEVLFDITTNLEVELEMKRNLSITSFGCGPGPEIAAYISFLRSELYVEK-RLNVLAVDKIGYWRDFVNVIT-KCDSNITLAFQNATLSASYLLGIRDQGVCIMSYPEAVNFGDIWDLMIKKFRLIIILDQSKQQLHCSLRETGF-------TICNFTFRGQKSYAYYLTK 229
The following BLAST results are available for this feature:
BLAST of SMED30007769 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007769 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007769 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007769 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007769 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007769 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007769 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007769 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A1I8IXF11.177e-624.61Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A267GR901.222e-624.61Uncharacterized protein (Fragment) OS=Macrostomum ... [more]
A0A267G0K61.222e-624.61Uncharacterized protein (Fragment) OS=Macrostomum ... [more]
A0A267FKL11.288e-623.33Uncharacterized protein (Fragment) OS=Macrostomum ... [more]
A0A267G8H21.288e-623.33Uncharacterized protein (Fragment) OS=Macrostomum ... [more]
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BLAST of SMED30007769 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007769 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007769 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007769 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007769 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007769 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000033630.11.072e-10489.24SMESG000033630.1[more]
SMESG000033621.14.566e-7870.91SMESG000033621.1[more]
SMESG000049126.12.138e-3031.37SMESG000049126.1[more]
SMESG000049128.17.573e-2931.71SMESG000049128.1[more]
SMESG000049128.11.002e-2831.71SMESG000049128.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30007769 ID=SMED30007769|Name=SMED30007769|organism=Schmidtea mediterranea sexual|type=transcript|length=903bp
TTTCATGATTACTTTTCAATGTTAAGTTTGGTCAAAGTTAATCAATAATA
AATTTTGATCTTATTATACAAAGAGTTGAATATATAGAGGACAAATTTTC
AATTTCTATATTTTAATCAAAAGAACTTTTATACATTTAATCCACCTGCA
GCAGGTACGGGTATGGATCCAGCGATAGATACAGTTATGGCCACTGCAAA
GAATACCAAGTGTCGTTTTAATTCCTATAATTTATCTAGAACAGGTAAAT
TGTACACTAAATGGAAAAAAGATAGAAAAAAGCAAAATCAATATTTTACT
GATGACTTGTTCAGAGCTTTTTATATTGAAGATCTTTACAGTAGAAGAGT
TGATTGCTTTTATAGTCTTCTGATGTTTTCCAACTTCAATGACAATATCC
TGGAGTTTATTAGAAAGTGCAAAAATGTGACAAGTTTCGGTTGCGGTGCA
GCTCCAGAGGTATTGGCCTATATCAAATTTGTCCGAGGCCAATTAAGATG
CTCGAAATTGAACTTAAGATTTATTGGATACGATTCAATAGGTGAATGGG
ATATCTACATTGATGTTTTGAAAGGACATCTAGACAACAGAGTTACATTC
GATTTCAAAAAACTAACAATTGATACTAATTATATTTCCGAAATGTCTCA
AGGTGGCGCGTGCTTGATGTCCTATTCTCACTGGTCTCGATTTCCGGATA
TATGGGAATTATTGAAAACAAAGTTCCATTTGATTATAGTTCTTGATGTC
AAGGATAAACTAATGCAGAGTAAAATGCAAAAGTGCGGATATAATTCGAA
ATATTTTACTGATACAAATTGCAATGAATCGGCAAAGCAGTTTTATTATT
ATTTTACTCAATAACAAAATTTGATGTGTATATTTTTATTATTTTTTGAT
AGT
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protein sequence of SMED30007769-orf-1

>SMED30007769-orf-1 ID=SMED30007769-orf-1|Name=SMED30007769-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=234bp
MDPAIDTVMATAKNTKCRFNSYNLSRTGKLYTKWKKDRKKQNQYFTDDLF
RAFYIEDLYSRRVDCFYSLLMFSNFNDNILEFIRKCKNVTSFGCGAAPEV
LAYIKFVRGQLRCSKLNLRFIGYDSIGEWDIYIDVLKGHLDNRVTFDFKK
LTIDTNYISEMSQGGACLMSYSHWSRFPDIWELLKTKFHLIIVLDVKDKL
MQSKMQKCGYNSKYFTDTNCNESAKQFYYYFTQ*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000101muscle cell