SMED30007753

Overview
NameSMED30007753
Smed IDSMED30007753
Length (bp)2401
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30007753 (SMED30007753) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30007753 (SMED30007753) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30007753 (SMED30007753) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30007753 (SMED30007753) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30007753

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 7

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
nervous systemSMED30007753SMESG000016633.1 dd_Smed_v4_31397_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30007753SMESG000016633.1 dd_Smed_v4_31397_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30007753SMESG000016633.1 dd_Smed_v4_31397_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
reproductive organSMED30007753SMESG000081199.1 SMESG000076404.1 SMESG000075565.1 SMESG000072061.1 SMESG000069658.1 SMESG000068312.1 SMESG000068042.1 SMESG000067818.1 SMESG000066383.1 SMESG000061623.1 SMESG000058180.1 SMESG000057612.1 SMESG000056465.1 SMESG000051610.1 SMESG000051141.1 SMESG000044801.1 SMESG000043241.1 SMESG000042662.1 SMESG000033772.1 SMESG000033266.1 SMESG000022351.1 SMESG000016633.1 SMESG000013229.1 SMESG000012636.1 SMESG000010351.1 SMESG000009500.1 SMESG000005685.1 SMESG000002786.1 SMESG000001901.1 SMESG000001786.1 Contig36569newmark_estsPMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30007753SMESG000081199.1 SMESG000076404.1 SMESG000075565.1 SMESG000072061.1 SMESG000069658.1 SMESG000068312.1 SMESG000068042.1 SMESG000067818.1 SMESG000066383.1 SMESG000061623.1 SMESG000058180.1 SMESG000057612.1 SMESG000056465.1 SMESG000051610.1 SMESG000051141.1 SMESG000044801.1 SMESG000043241.1 SMESG000042662.1 SMESG000033772.1 SMESG000033266.1 SMESG000022351.1 SMESG000016633.1 SMESG000013229.1 SMESG000012636.1 SMESG000010351.1 SMESG000009500.1 SMESG000005685.1 SMESG000002786.1 SMESG000001901.1 SMESG000001786.1 Contig36569uc_Smed_v2PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30007753SMESG000016633.1 Contig43437newmark_estsPMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30007753SMESG000016633.1 Contig43437uc_Smed_v2PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of SMED30007753 vs. Planmine SMEST
Match: SMESG000016633.1 (SMESG000016633.1)

HSP 1 Score: 1288.86 bits (3334), Expect = 0.000e+0
Identity = 623/632 (98.58%), Postives = 625/632 (98.89%), Query Frame = 2 
Query:  425 EYHNQFLVTKNETNHTLERKANAFGIIGRIYAFHNLQVKLEYSWNYNCTDKGFGPICSTMCKESLSTTCDKYTGQATCSTGYIGFLQKTYEVFLPYIYNCSSLDTCFNVTCPDEEVCIRFPPHISLTVCRDYKTGIEPNAKCIPVTEKVKCILIGSLPPDVNVTASWKYFVLDDGAMISGEYIEFAEGIPASEPYECVITFDDFIPKQSISNNFTFMVYDDSAVIHLNVEYEFVYLGQLIICSVEGWNPDLVNYTVYAGDPDTLILDRIEQNMYEVSTKSQLVMNSITCVATLSFNCNNKDPYLRSITVPVYVAAFQKLEWFGGERNIFYRGIDENPFQCTSSLPTNAANINVTIMHQPKITENNAILNETLVPGIYYAACTLELIDTNHSYTIYKHIHIHYFPNQSELTYQMDSNTYDSKVQCLPIPYPIEDYDYSITIFSSYNNLSVVGTYNRRALERFPFDSSSNGEYLIKCTMKPKYPGRYKMIEKTFRVKLSEWRNPIVFIYMNWIVWSQVFYASLLIMIAVFSLSWIIHMKSMSCISGDYLTKRTKVLFNLKRRNKNFYNKLIEWMEATNSYFYTVGIIPLSVSEAYQIIRTEPIITRDFFQYISGVKINVHDVNTLNEKSNFYQK 2320
            E  N     +NETNHTLERKANAFGIIGRIYAFHNLQVKLEYSWNYNCTDKGFGPICSTMCKESLSTTCDKYTGQATCSTGYIGFLQKTYEVFLPYIYNCSSLDTCFNVTCPDEEVCIRFPPHISLTVCRDYKTGIEPNAKCIPVTEKVKCILIGSLPPDVNVTASWKYFVLDDGAMISGEYIEFAEGIPASEPYECVITFDDFIPKQSISNNFTFMVYDDSAVIHLNVEYEFVYLGQLIICSVEGWNPDLVNYTVYAGDPDTLILDRIEQNMYEVSTKSQLVMNSITCVATLSFNCNNKDPYLRSITVPVYVAAFQKLEWFGGERNIFYRGIDENPFQCTSSLPTNAANINVTIMHQPKITENNAILNETLVPGIYYAACTLELIDTNHSYTIYKHIHIHYFPNQSELTYQMDSNTYDSKVQCLPIPYPIEDYDYSITIFSSYNNLSVVGTYNRRALERFPFDSSSNGEYLIKCTMKPKYPGRYKMIEKTFRVKLSEWRNPIVFIY+NWIVWSQVFYASLLIMIAVFSLSWIIHMKSMSCISGDYLTKRTKVLFNLKRRNKNFYNKLIEWMEATNSYFYTVGIIPLSVSEAYQIIRTEPIITRDFFQYISGVKINVHDVNTLNEKSNFYQK
Sbjct:  170 ENENLLPFPENETNHTLERKANAFGIIGRIYAFHNLQVKLEYSWNYNCTDKGFGPICSTMCKESLSTTCDKYTGQATCSTGYIGFLQKTYEVFLPYIYNCSSLDTCFNVTCPDEEVCIRFPPHISLTVCRDYKTGIEPNAKCIPVTEKVKCILIGSLPPDVNVTASWKYFVLDDGAMISGEYIEFAEGIPASEPYECVITFDDFIPKQSISNNFTFMVYDDSAVIHLNVEYEFVYLGQLIICSVEGWNPDLVNYTVYAGDPDTLILDRIEQNMYEVSTKSQLVMNSITCVATLSFNCNNKDPYLRSITVPVYVAAFQKLEWFGGERNIFYRGIDENPFQCTSSLPTNAANINVTIMHQPKITENNAILNETLVPGIYYAACTLELIDTNHSYTIYKHIHIHYFPNQSELTYQMDSNTYDSKVQCLPIPYPIEDYDYSITIFSSYNNLSVVGTYNRRALERFPFDSSSNGEYLIKCTMKPKYPGRYKMIEKTFRVKLSEWRNPIVFIYINWIVWSQVFYASLLIMIAVFSLSWIIHMKSMSCISGDYLTKRTKVLFNLKRRNKNFYNKLIEWMEATNSYFYTVGIIPLSVSEAYQIIRTEPIITRDFFQYISGVKINVHDVNTLNEKSNFYQK 801

HSP 2 Score: 301.597 bits (771), Expect = 5.014e-90
Identity = 142/144 (98.61%), Postives = 144/144 (100.00%), Query Frame = 3 
Query:   27 MINFMPPIIVQRLDRDALISFKLYSVNLDLNNTGFRCYPPIWNFTGHCDFKVFVFGCSHSLTNLTAIPIFQDHEKDIYHLRYSAKDAERVNNLTYSYFSDPTIYTCNDNARSIPVIFESMEKSFENLTHPPHLNITTSSWSQKM 458
            MINFMPPIIVQRLDRDALISFKLYSVNLDLNNTGFRCYPPIWNFTGHCDFKVFVFGCSHSLTNLTAIPIFQDHEKDIYHLRYSAKDAERVNNLTYSYFSDPTIYTCNDNARSIPVIFESMEKSFENLTHPPHLNITTSSWSQ++
Sbjct:    1 MINFMPPIIVQRLDRDALISFKLYSVNLDLNNTGFRCYPPIWNFTGHCDFKVFVFGCSHSLTNLTAIPIFQDHEKDIYHLRYSAKDAERVNNLTYSYFSDPTIYTCNDNARSIPVIFESMEKSFENLTHPPHLNITTSSWSQRV 144
[Close]
BLAST of SMED30007753 vs. Planmine SMEST
Match: SMESG000016633.1 (SMESG000016633.1)

HSP 1 Score: 1287.32 bits (3330), Expect = 0.000e+0
Identity = 623/632 (98.58%), Postives = 625/632 (98.89%), Query Frame = 2 
Query:  425 EYHNQFLVTKNETNHTLERKANAFGIIGRIYAFHNLQVKLEYSWNYNCTDKGFGPICSTMCKESLSTTCDKYTGQATCSTGYIGFLQKTYEVFLPYIYNCSSLDTCFNVTCPDEEVCIRFPPHISLTVCRDYKTGIEPNAKCIPVTEKVKCILIGSLPPDVNVTASWKYFVLDDGAMISGEYIEFAEGIPASEPYECVITFDDFIPKQSISNNFTFMVYDDSAVIHLNVEYEFVYLGQLIICSVEGWNPDLVNYTVYAGDPDTLILDRIEQNMYEVSTKSQLVMNSITCVATLSFNCNNKDPYLRSITVPVYVAAFQKLEWFGGERNIFYRGIDENPFQCTSSLPTNAANINVTIMHQPKITENNAILNETLVPGIYYAACTLELIDTNHSYTIYKHIHIHYFPNQSELTYQMDSNTYDSKVQCLPIPYPIEDYDYSITIFSSYNNLSVVGTYNRRALERFPFDSSSNGEYLIKCTMKPKYPGRYKMIEKTFRVKLSEWRNPIVFIYMNWIVWSQVFYASLLIMIAVFSLSWIIHMKSMSCISGDYLTKRTKVLFNLKRRNKNFYNKLIEWMEATNSYFYTVGIIPLSVSEAYQIIRTEPIITRDFFQYISGVKINVHDVNTLNEKSNFYQK 2320
            E  N     +NETNHTLERKANAFGIIGRIYAFHNLQVKLEYSWNYNCTDKGFGPICSTMCKESLSTTCDKYTGQATCSTGYIGFLQKTYEVFLPYIYNCSSLDTCFNVTCPDEEVCIRFPPHISLTVCRDYKTGIEPNAKCIPVTEKVKCILIGSLPPDVNVTASWKYFVLDDGAMISGEYIEFAEGIPASEPYECVITFDDFIPKQSISNNFTFMVYDDSAVIHLNVEYEFVYLGQLIICSVEGWNPDLVNYTVYAGDPDTLILDRIEQNMYEVSTKSQLVMNSITCVATLSFNCNNKDPYLRSITVPVYVAAFQKLEWFGGERNIFYRGIDENPFQCTSSLPTNAANINVTIMHQPKITENNAILNETLVPGIYYAACTLELIDTNHSYTIYKHIHIHYFPNQSELTYQMDSNTYDSKVQCLPIPYPIEDYDYSITIFSSYNNLSVVGTYNRRALERFPFDSSSNGEYLIKCTMKPKYPGRYKMIEKTFRVKLSEWRNPIVFIY+NWIVWSQVFYASLLIMIAVFSLSWIIHMKSMSCISGDYLTKRTKVLFNLKRRNKNFYNKLIEWMEATNSYFYTVGIIPLSVSEAYQIIRTEPIITRDFFQYISGVKINVHDVNTLNEKSNFYQK
Sbjct:  166 ENENLLPFPENETNHTLERKANAFGIIGRIYAFHNLQVKLEYSWNYNCTDKGFGPICSTMCKESLSTTCDKYTGQATCSTGYIGFLQKTYEVFLPYIYNCSSLDTCFNVTCPDEEVCIRFPPHISLTVCRDYKTGIEPNAKCIPVTEKVKCILIGSLPPDVNVTASWKYFVLDDGAMISGEYIEFAEGIPASEPYECVITFDDFIPKQSISNNFTFMVYDDSAVIHLNVEYEFVYLGQLIICSVEGWNPDLVNYTVYAGDPDTLILDRIEQNMYEVSTKSQLVMNSITCVATLSFNCNNKDPYLRSITVPVYVAAFQKLEWFGGERNIFYRGIDENPFQCTSSLPTNAANINVTIMHQPKITENNAILNETLVPGIYYAACTLELIDTNHSYTIYKHIHIHYFPNQSELTYQMDSNTYDSKVQCLPIPYPIEDYDYSITIFSSYNNLSVVGTYNRRALERFPFDSSSNGEYLIKCTMKPKYPGRYKMIEKTFRVKLSEWRNPIVFIYINWIVWSQVFYASLLIMIAVFSLSWIIHMKSMSCISGDYLTKRTKVLFNLKRRNKNFYNKLIEWMEATNSYFYTVGIIPLSVSEAYQIIRTEPIITRDFFQYISGVKINVHDVNTLNEKSNFYQK 797

HSP 2 Score: 293.508 bits (750), Expect = 4.147e-87
Identity = 138/140 (98.57%), Postives = 140/140 (100.00%), Query Frame = 3 
Query:   39 MPPIIVQRLDRDALISFKLYSVNLDLNNTGFRCYPPIWNFTGHCDFKVFVFGCSHSLTNLTAIPIFQDHEKDIYHLRYSAKDAERVNNLTYSYFSDPTIYTCNDNARSIPVIFESMEKSFENLTHPPHLNITTSSWSQKM 458
            MPPIIVQRLDRDALISFKLYSVNLDLNNTGFRCYPPIWNFTGHCDFKVFVFGCSHSLTNLTAIPIFQDHEKDIYHLRYSAKDAERVNNLTYSYFSDPTIYTCNDNARSIPVIFESMEKSFENLTHPPHLNITTSSWSQ++
Sbjct:    1 MPPIIVQRLDRDALISFKLYSVNLDLNNTGFRCYPPIWNFTGHCDFKVFVFGCSHSLTNLTAIPIFQDHEKDIYHLRYSAKDAERVNNLTYSYFSDPTIYTCNDNARSIPVIFESMEKSFENLTHPPHLNITTSSWSQRV 140
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BLAST of SMED30007753 vs. Planmine SMEST
Match: SMESG000039987.1 (SMESG000039987.1)

HSP 1 Score: 54.299 bits (129), Expect = 3.885e-7
Identity = 68/322 (21.12%), Postives = 128/322 (39.75%), Query Frame = 2 
Query:  509 RIYAFHNLQVKLEYSWNYNCTDKGFGPICSTMCKESLST-TCDKYTGQATCSTGYIGFLQKTYEVFLP--------YIYNCSSLDTCFNVTCPDEEVCIRFPPHISLTVCRDYKTGIEPNAKCIPVTEKVKCILIGSLPP-DVNVTASWKYFVLDDGA-------MISGE--YIEFAEGIPA-SEPYECVITFDDFIPKQSISNNFTFMVYDDSAVIHLNVEYEFVYLGQLIICSVEGWNPDLVNYTVYAGDPDTLILDRIEQNMYEVSTKSQLVMNSITCVATLSFNCNNKDPYLRSITVPVYVAAFQKLEWFGGERNIFY 1414
            + Y++ +L  +++ S + +C    F   C   C +   T TC+  TG+  C  G+        ++  P         + +C  +D C+N  C D  VC  F     ++VC        P    +   E +KC L  +    ++ +  +W+Y    + A       ++ G+  YI   E  P+ +   +C+ T      K     N+T ++  +  ++ LNV  + VYLG  ++C    W  D  +Y       ++ IL     ++  + +   L    + C  T     N      R   + VYV   ++ +W    + IF+
Sbjct:  218 QAYSYSSLFAQMQVSVSVHCQPSFFLTGCWLYCFDRHKTYTCNPDTGKEECEPGWFTSDTLYVDIKRPNFRTMPSVLVQHCDMVDDCYNTNCKD--VC--FSVGNGISVCLSSPLKFTPENLLVRPGESIKCSLESTNNQFEIPIRFTWQYVTSSNSANEAVSNMVMQGDTLYI-LKEASPSLNNLVKCLATDASGNIKSEEIRNYTIIL--NPTILRLNVTLQHVYLGDYVMCYSNAWPQDFFSYQFLVKSANSEILKY--SSIIYIESFISLGEMLLNCSVTYMSGDNETSSLFRVFKLYVYV--MRQFKWTNFRKPIFF 528
[Close]
BLAST of SMED30007753 vs. Planmine SMEST
Match: SMESG000039976.1 (SMESG000039976.1)

HSP 1 Score: 50.0618 bits (118), Expect = 6.706e-6
Identity = 60/281 (21.35%), Postives = 108/281 (38.43%), Query Frame = 2 
Query:  629 CDKYTGQATCSTG-------YIGFLQKTYEVFLP--YIYNCSSLDTCFNVTCPDEEVCIRFPPHISLTVCRDYKTGIEPNAKCIPVTEKVKCILIGSLPP-DVNVTASWKYF--VLDDGAMISGEYIE------FAEGIPA-SEPYECVITFDDFIPKQSISNNFTFMVYDDSAVIHLNVEYEFVYLGQLIICSVEGWNPDLVNYTVYAGDPDTLILDRIEQNMYEVSTKSQLVMNSITCVATLSFNCNNKDPYLRSITVPVYVAAFQKLEWFGGERNIFY 1414
            C+   G+  C  G       YI   +  ++  +P   + +C  +D C+N +C D   C  F      ++C       +P    +   + + C    +    D+ ++ +W+Y   V DD   +S   ++        E  P+ +   +C+ T      K     N+T ++  +  V+ LNV  + VYLG  ++C    W  D  +Y       +  I  R   N+  +     L    + C  +     N    Y R   + VYV  F+K  W    + IF+
Sbjct:  173 CNTDNGKEECQPGWFVSDTLYIDVNRTNFKA-MPSVLVRHCDMIDDCYNSSCKD--AC--FSTGNGTSICLSNTLKFKPEKLFVIPGDAITCSFENTNNQFDIPISFTWQYVTSVNDDNEAVSNMVMQENTLYILREASPSFNNLVKCLATDASGNIKAEEIRNYTIIL--NPTVLRLNVTLQHVYLGDYVMCYSNAWPQDFFSYQFLVKSNNKEIFRR--SNIVYLEDDISLGEMLLNCSVSYKNRDNETIAYFRVFKLYVYV--FRKFRWSNFRKPIFF 442
The following BLAST results are available for this feature:
BLAST of SMED30007753 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007753 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007753 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007753 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007753 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007753 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007753 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007753 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007753 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007753 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007753 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007753 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007753 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007753 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 4
Match NameE-valueIdentityDescription
SMESG000016633.15.014e-9098.58SMESG000016633.1[more]
SMESG000016633.14.147e-8798.58SMESG000016633.1[more]
SMESG000039987.13.885e-721.12SMESG000039987.1[more]
SMESG000039976.16.706e-621.35SMESG000039976.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30007753 ID=SMED30007753|Name=SMED30007753|organism=Schmidtea mediterranea sexual|type=transcript|length=2401bp
TGTGGATTTGCATCCTAGTGGTTTTGATGATTAATTTTATGCCCCCTATT
ATTGTACAACGTTTAGACAGAGATGCATTGATATCCTTTAAATTATATAG
CGTAAATCTTGATTTGAACAACACAGGGTTCCGATGCTACCCACCTATTT
GGAATTTCACCGGCCATTGTGACTTCAAAGTATTTGTCTTTGGATGTAGC
CATTCTTTGACAAATTTAACAGCAATTCCAATATTTCAAGATCATGAAAA
AGATATATATCATCTACGATATTCTGCCAAAGACGCTGAGAGAGTCAATA
ATCTTACGTACTCTTATTTTAGTGATCCAACGATATATACCTGTAATGAT
AATGCTCGAAGTATTCCAGTAATATTTGAAAGTATGGAAAAATCATTTGA
AAATTTGACTCACCCCCCTCATTTGAATATCACAACCAGTTCTTGGTCAC
AAAAAATGAAACAAATCATACCTTAGAACGTAAAGCTAATGCTTTTGGGA
TAATTGGTCGAATTTATGCATTCCATAATTTGCAAGTGAAATTAGAATAT
AGTTGGAACTATAACTGTACTGATAAAGGATTTGGCCCAATTTGTTCTAC
GATGTGTAAAGAAAGTCTTTCAACTACATGTGACAAATATACAGGTCAAG
CTACATGTTCAACAGGTTATATTGGATTCCTACAGAAGACATATGAAGTA
TTTTTACCATATATATACAATTGCTCATCACTTGACACATGTTTCAATGT
CACTTGTCCGGACGAAGAGGTTTGCATACGATTTCCTCCTCATATCAGTC
TTACGGTATGTAGAGATTATAAAACTGGCATAGAGCCAAACGCAAAATGT
ATACCAGTGACCGAAAAAGTGAAGTGCATATTGATTGGATCATTGCCTCC
AGATGTTAATGTGACTGCTTCATGGAAATATTTTGTTTTAGATGACGGTG
CAATGATTTCCGGAGAATATATTGAATTTGCAGAGGGTATTCCAGCATCG
GAACCTTATGAATGCGTTATCACATTTGACGACTTTATACCTAAACAGTC
AATTTCTAATAATTTTACTTTTATGGTTTACGACGATTCAGCGGTTATAC
ATTTAAATGTTGAATATGAATTTGTTTATCTGGGCCAATTGATAATTTGT
TCCGTAGAAGGGTGGAATCCTGACTTGGTTAACTATACTGTTTATGCCGG
AGATCCGGATACCTTGATACTAGACCGGATTGAACAGAATATGTATGAAG
TGAGTACAAAATCCCAGTTGGTGATGAATAGCATCACATGCGTCGCAACG
CTATCATTCAACTGCAATAATAAAGATCCATATTTACGCAGCATTACTGT
ACCAGTTTATGTCGCAGCATTTCAAAAACTAGAATGGTTTGGTGGTGAAA
GAAATATATTTTATAGAGGAATAGATGAAAATCCATTTCAATGCACTTCT
AGCTTACCAACTAATGCAGCTAACATTAACGTTACCATTATGCATCAACC
AAAAATTACGGAAAACAATGCCATTTTAAACGAAACACTAGTTCCGGGAA
TTTATTACGCCGCCTGTACTTTGGAACTCATTGATACTAATCATTCTTAT
ACTATTTACAAACATATTCACATTCACTATTTTCCGAATCAAAGTGAACT
TACATACCAAATGGATTCAAACACTTATGATTCCAAGGTACAGTGCTTGC
CTATTCCTTACCCCATTGAGGATTATGATTATTCAATCACAATTTTCAGC
AGTTATAATAATTTATCCGTAGTCGGAACTTATAACAGACGAGCATTAGA
ACGCTTTCCTTTTGATAGTTCCTCCAATGGAGAATATTTAATTAAATGTA
CAATGAAGCCAAAATATCCCGGTAGATACAAAATGATAGAAAAGACATTT
CGAGTTAAATTAAGCGAATGGAGAAATCCTATTGTTTTCATATATATGAA
TTGGATAGTTTGGTCACAGGTATTTTACGCAAGTTTATTAATTATGATTG
CAGTATTCTCATTGTCATGGATAATACATATGAAATCTATGAGTTGTATT
TCGGGAGATTATTTAACAAAACGAACTAAAGTATTGTTTAATTTAAAAAG
GCGAAACAAAAACTTTTACAATAAACTCATCGAATGGATGGAAGCTACTA
ATTCCTATTTCTACACTGTTGGCATTATCCCATTGAGCGTATCGGAGGCC
TATCAAATAATTCGAACTGAACCAATTATCACAAGAGATTTTTTTCAATA
CATTAGTGGAGTGAAAATCAATGTTCATGATGTAAATACACTCAATGAAA
AATCAAATTTTTATCAAAAATTAAAGTGCGATAGCCATATACAGATAGTC
ACCTCCCTATGCCGATAGTAATCTCTATGCCGATAGTCATCTCCTATGTC
G
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protein sequence of SMED30007753-orf-1

>SMED30007753-orf-1 ID=SMED30007753-orf-1|Name=SMED30007753-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=158bp
WICILVVLMINFMPPIIVQRLDRDALISFKLYSVNLDLNNTGFRCYPPIW
NFTGHCDFKVFVFGCSHSLTNLTAIPIFQDHEKDIYHLRYSAKDAERVNN
LTYSYFSDPTIYTCNDNARSIPVIFESMEKSFENLTHPPHLNITTSSWSQ
KMKQIIP*
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protein sequence of SMED30007753-orf-2

>SMED30007753-orf-2 ID=SMED30007753-orf-2|Name=SMED30007753-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=589bp
MCKESLSTTCDKYTGQATCSTGYIGFLQKTYEVFLPYIYNCSSLDTCFNV
TCPDEEVCIRFPPHISLTVCRDYKTGIEPNAKCIPVTEKVKCILIGSLPP
DVNVTASWKYFVLDDGAMISGEYIEFAEGIPASEPYECVITFDDFIPKQS
ISNNFTFMVYDDSAVIHLNVEYEFVYLGQLIICSVEGWNPDLVNYTVYAG
DPDTLILDRIEQNMYEVSTKSQLVMNSITCVATLSFNCNNKDPYLRSITV
PVYVAAFQKLEWFGGERNIFYRGIDENPFQCTSSLPTNAANINVTIMHQP
KITENNAILNETLVPGIYYAACTLELIDTNHSYTIYKHIHIHYFPNQSEL
TYQMDSNTYDSKVQCLPIPYPIEDYDYSITIFSSYNNLSVVGTYNRRALE
RFPFDSSSNGEYLIKCTMKPKYPGRYKMIEKTFRVKLSEWRNPIVFIYMN
WIVWSQVFYASLLIMIAVFSLSWIIHMKSMSCISGDYLTKRTKVLFNLKR
RNKNFYNKLIEWMEATNSYFYTVGIIPLSVSEAYQIIRTEPIITRDFFQY
ISGVKINVHDVNTLNEKSNFYQKLKCDSHIQIVTSLCR*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
PLANA:0002089reproductive organ
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableTMHMMTMhelixcoord: 452..474