SMED-SMAD6/7-1
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30007744 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 18
Homology
BLAST of SMED-SMAD6/7-1 vs. Ensembl Fly
Match: Dad (gene:FBgn0020493 transcript:FBtr0083394) HSP 1 Score: 54.299 bits (129), Expect = 1.341e-7 Identity = 32/110 (29.09%), Postives = 53/110 (48.18%), Query Frame = 1 Query: 898 LGICIHQLNNRFVSLYNYTTQPIFISSICKEIQDHNFNKHDPYIPVYKILPNHSVNVFSLDQIDTIKL-SQTSIPILNSGIFTVQISFGKGWGRGYSRSSFLYCPCRCEI 1224 LG+ + L N V +YN IF+ S N ++ V K++P + + F ++ + + + P+ F+++ISFGKGWGR Y R + CPC E+ Sbjct: 463 LGVTL-SLENGDVWIYNRGNTTIFVDS---PTLSENLDR------VCKVMPGYCLKAFETNRAELLSMRDHGHHPMGPVDYFSIKISFGKGWGRDYKRQDIMGCPCWLEV 562
BLAST of SMED-SMAD6/7-1 vs. Ensembl Fly
Match: Dad (gene:FBgn0020493 transcript:FBtr0083393) HSP 1 Score: 54.299 bits (129), Expect = 1.341e-7 Identity = 32/110 (29.09%), Postives = 53/110 (48.18%), Query Frame = 1 Query: 898 LGICIHQLNNRFVSLYNYTTQPIFISSICKEIQDHNFNKHDPYIPVYKILPNHSVNVFSLDQIDTIKL-SQTSIPILNSGIFTVQISFGKGWGRGYSRSSFLYCPCRCEI 1224 LG+ + L N V +YN IF+ S N ++ V K++P + + F ++ + + + P+ F+++ISFGKGWGR Y R + CPC E+ Sbjct: 463 LGVTL-SLENGDVWIYNRGNTTIFVDS---PTLSENLDR------VCKVMPGYCLKAFETNRAELLSMRDHGHHPMGPVDYFSIKISFGKGWGRDYKRQDIMGCPCWLEV 562
BLAST of SMED-SMAD6/7-1 vs. Ensembl Fly
Match: Dad (gene:FBgn0020493 transcript:FBtr0100160) HSP 1 Score: 54.299 bits (129), Expect = 1.341e-7 Identity = 32/110 (29.09%), Postives = 53/110 (48.18%), Query Frame = 1 Query: 898 LGICIHQLNNRFVSLYNYTTQPIFISSICKEIQDHNFNKHDPYIPVYKILPNHSVNVFSLDQIDTIKL-SQTSIPILNSGIFTVQISFGKGWGRGYSRSSFLYCPCRCEI 1224 LG+ + L N V +YN IF+ S N ++ V K++P + + F ++ + + + P+ F+++ISFGKGWGR Y R + CPC E+ Sbjct: 463 LGVTL-SLENGDVWIYNRGNTTIFVDS---PTLSENLDR------VCKVMPGYCLKAFETNRAELLSMRDHGHHPMGPVDYFSIKISFGKGWGRDYKRQDIMGCPCWLEV 562
BLAST of SMED-SMAD6/7-1 vs. Ensembl Zebrafish
Match: smad6a (SMAD family member 6a [Source:ZFIN;Acc:ZDB-GENE-011015-1]) HSP 1 Score: 55.4546 bits (132), Expect = 1.143e-8 Identity = 35/102 (34.31%), Postives = 53/102 (51.96%), Query Frame = 1 Query: 934 VSLYNYTTQPIFISSICKEIQDHNFNKHDPYIP--VYKILPNHSVNVFSLDQIDTIKLSQTSIPILNSGIF---TVQISFGKGWGRGYSRSSFLYCPCRCEI 1224 V YN + PIF++S E H PY+ V +++P +S+ VF ++ + ++ S P+ G + +V+ISF KGWG YSR CPC EI Sbjct: 80 VWAYNRSQHPIFVNSPTLE--------HHPYLSLTVRRVMPGYSIKVFDYEK--SCQMQPASHPVHPEGPYDPNSVRISFAKGWGPCYSRQFITSCPCWLEI 171
BLAST of SMED-SMAD6/7-1 vs. Ensembl Zebrafish
Match: smad6a (SMAD family member 6a [Source:ZFIN;Acc:ZDB-GENE-011015-1]) HSP 1 Score: 55.4546 bits (132), Expect = 1.143e-8 Identity = 35/102 (34.31%), Postives = 53/102 (51.96%), Query Frame = 1 Query: 934 VSLYNYTTQPIFISSICKEIQDHNFNKHDPYIP--VYKILPNHSVNVFSLDQIDTIKLSQTSIPILNSGIF---TVQISFGKGWGRGYSRSSFLYCPCRCEI 1224 V YN + PIF++S E H PY+ V +++P +S+ VF ++ + ++ S P+ G + +V+ISF KGWG YSR CPC EI Sbjct: 80 VWAYNRSQHPIFVNSPTLE--------HHPYLSLTVRRVMPGYSIKVFDYEK--SCQMQPASHPVHPEGPYDPNSVRISFAKGWGPCYSRQFITSCPCWLEI 171
BLAST of SMED-SMAD6/7-1 vs. Ensembl Zebrafish
Match: smad6a (SMAD family member 6a [Source:ZFIN;Acc:ZDB-GENE-011015-1]) HSP 1 Score: 55.4546 bits (132), Expect = 6.587e-8 Identity = 35/102 (34.31%), Postives = 53/102 (51.96%), Query Frame = 1 Query: 934 VSLYNYTTQPIFISSICKEIQDHNFNKHDPYIP--VYKILPNHSVNVFSLDQIDTIKLSQTSIPILNSGIF---TVQISFGKGWGRGYSRSSFLYCPCRCEI 1224 V YN + PIF++S E H PY+ V +++P +S+ VF ++ + ++ S P+ G + +V+ISF KGWG YSR CPC EI Sbjct: 359 VWAYNRSQHPIFVNSPTLE--------HHPYLSLTVRRVMPGYSIKVFDYEK--SCQMQPASHPVHPEGPYDPNSVRISFAKGWGPCYSRQFITSCPCWLEI 450
BLAST of SMED-SMAD6/7-1 vs. Ensembl Zebrafish
Match: smad7 (SMAD family member 7 [Source:ZFIN;Acc:ZDB-GENE-030128-3]) HSP 1 Score: 48.9062 bits (115), Expect = 2.363e-6 Identity = 31/98 (31.63%), Postives = 47/98 (47.96%), Query Frame = 1 Query: 934 VSLYNYTTQPIFISSICKEIQDHNFNKHDPYIPVYKILPNHSVNVFSLDQIDTI-KLSQTSIPILNSGIFTVQISFGKGWGRGYSRSSFLYCPCRCEI 1224 V +YN + PIFI S + N + V+K+ P S+ F ++ ++ + + FTVQISF KGWG+ Y+R CPC E+ Sbjct: 83 VWVYNRSCYPIFIKSATLD------NPDSRTLLVHKVFPGFSIKAFDFEKAGSLQRPNDHEFSQQPRTGFTVQISFVKGWGQCYTRQFISSCPCWLEV 174
BLAST of SMED-SMAD6/7-1 vs. Ensembl Xenopus
Match: SMAD7 (SMAD family member 7 [Source:NCBI gene;Acc:100486892]) HSP 1 Score: 53.5286 bits (127), Expect = 2.963e-7 Identity = 79/301 (26.25%), Postives = 120/301 (39.87%), Query Frame = 1 Query: 421 ILAKLNIQQLKIFLEIAQSIHQFQSFSPIIPCIKGCSNLFRY-FDIDYIKNILWITFRSSLLSGSNEIKFMSICSNRQD------CINPFHWSLMKTVESMNVDQNILYDSYFFSSIQCNLRIEETIRPTKIITPAI-SSLSSVFIIYYQSCPSVTTDCKPDSLWQELGICIHQLNNR------------------------FVSLYNYTTQPIFISSICKEIQDHNFNKHDPYIPVYKILPNHSVNVFSLDQIDTIKLSQTSIPILNSGI-FTVQISFGKGWGRGYSRSSFLYCPCRCEI 1224 +L KL +QL+ L+ + +S ++P K S L + F + + L FR L S+E+K +S C + C NP H S + +ES Y F L + ET P+ A + V +Y PS+ D D L Q G C+ QLN+ V +YN ++ PIFI S + D + V+K+ P S+ F ++ +++ + FTVQISF KGWG+ Y+R CPC E+ Sbjct: 66 VLKKLKEKQLEGLLQAVECKGGARSPCLLLPAAKLDSRLGQQPFSLPLL---LCKVFRWPDLRHSSEVKRLSCCDSYGKNNPELVCCNPHHLSRLCELES-PPPPYTRYPMDFLKPTDSQL-LHETGDPSHWCVVAYWEEKTRVGRLYSVQEPSL--DIFYD-LPQGNGFCLGQLNSDNKSQLVQKVRSKIGYGIQLTKEVDGVWVYNRSSYPIFIKSATLDNPDSR------TLLVHKVFPGFSIKAFDYEKAYSLQRPNDHEFMQQPWTGFTVQISFVKGWGQCYTRQFISSCPCWLEV 352
BLAST of SMED-SMAD6/7-1 vs. Ensembl Xenopus
Match: ENSXETT00000014299.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:KV460985.1:12824:13444:1 gene:ENSXETG00000004008.1 transcript:ENSXETT00000014299.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 50.8322 bits (120), Expect = 8.439e-7 Identity = 36/105 (34.29%), Postives = 48/105 (45.71%), Query Frame = 1 Query: 934 VSLYNYTTQPIFISSICKEIQDHNFNKHDPYIPVYKILPNHSVNVFSLDQIDTIKLSQTSIPILNSGI---FTVQISFGKGWGRGYSRSSFLYCPCRCEISIILP 1239 V +YN + PIF++S VYK+LP +S+ VF +S +S L G +V+ISF KGWG YSR CPC EI + P Sbjct: 99 VWVYNRSDHPIFVNSPTLAPMSGRGQS------VYKVLPGYSIKVFEQG------VSMSSYTYLGDGPCDPHSVRISFAKGWGSSYSRQFITSCPCWLEILLCPP 191
BLAST of SMED-SMAD6/7-1 vs. TrEMBL
Match: I3RSU1 (SMED-SMAD6/7-1 OS=Schmidtea mediterranea OX=79327 PE=2 SV=1) HSP 1 Score: 684.1 bits (1764), Expect = 0.000e+0 Identity = 339/340 (99.71%), Postives = 340/340 (100.00%), Query Frame = 1 Query: 229 MKSNSILNISQDQINQETCLGSWTNFVYKRKLIKNIIYLMKTNNKSRFLTVQDCCKNILEILSKILAKLNIQQLKIFLEIAQSIHQFQSFSPIIPCIKGCSNLFRYFDIDYIKNILWITFRSSLLSGSNEIKFMSICSNRQDCINPFHWSLMKTVESMNVDQNILYDSYFFSSIQCNLRIEETIRPTKIITPAISSLSSVFIIYYQSCPSVTTDCKPDSLWQELGICIHQLNNRFVSLYNYTTQPIFISSICKEIQDHNFNKHDPYIPVYKILPNHSVNVFSLDQIDTIKLSQTSIPILNSGIFTVQISFGKGWGRGYSRSSFLYCPCRCEISIILPDSF 1248 MKSNSILNISQDQINQETCLGSWTNFVYKRKLIKNIIYLMKTNNKSRFLTVQDCCKNILEILSKILAKLNIQQLKIFLEIAQSIHQFQSFSPIIPCIKGCSNLFRYFDIDYIKNILWITFRSSLLSGSNEIKFMSICSNRQDCINPFHWSLMKTVESMNVDQNILYDSYFFSSIQCNLRI+ETIRPTKIITPAISSLSSVFIIYYQSCPSVTTDCKPDSLWQELGICIHQLNNRFVSLYNYTTQPIFISSICKEIQDHNFNKHDPYIPVYKILPNHSVNVFSLDQIDTIKLSQTSIPILNSGIFTVQISFGKGWGRGYSRSSFLYCPCRCEISIILPDSF Sbjct: 1 MKSNSILNISQDQINQETCLGSWTNFVYKRKLIKNIIYLMKTNNKSRFLTVQDCCKNILEILSKILAKLNIQQLKIFLEIAQSIHQFQSFSPIIPCIKGCSNLFRYFDIDYIKNILWITFRSSLLSGSNEIKFMSICSNRQDCINPFHWSLMKTVESMNVDQNILYDSYFFSSIQCNLRIKETIRPTKIITPAISSLSSVFIIYYQSCPSVTTDCKPDSLWQELGICIHQLNNRFVSLYNYTTQPIFISSICKEIQDHNFNKHDPYIPVYKILPNHSVNVFSLDQIDTIKLSQTSIPILNSGIFTVQISFGKGWGRGYSRSSFLYCPCRCEISIILPDSF 340
BLAST of SMED-SMAD6/7-1 vs. TrEMBL
Match: A0A443RNH5 (Mothers against decapentaplegic homolog OS=Dinothrombium tinctorium OX=1965070 GN=B4U79_10849 PE=3 SV=1) HSP 1 Score: 63.1586 bits (152), Expect = 2.693e-7 Identity = 58/229 (25.33%), Postives = 96/229 (41.92%), Query Frame = 1 Query: 610 SNEIKFMSICSNRQDCINPFHWSLM---KTVESMNVDQNILYDSYFFSSIQCNLRIEETIRPTKIITPAISSLSSVFIIYYQSCPSVTTDC---------KPDSLWQE------LGICIHQLNNRFVSLYNYTTQPIFISSICKEIQDHNFNKHDPY-IPVYKILPNHSVNVFSLDQIDTIKLSQTSIPILNSGI--FTVQISFGKGWGRGYSRSSFLYCPCRCEISII 1233 +E+K + C R CINP+HWS + ++E + ++ L+ + +E + + + FI + P C K DS+ + LGI I + +N V +YN + P+F++S H + + VYK+LP +S+ F D+ Q I +T++ISF KGWG YSR CPC E+ ++ Sbjct: 89 GDELKCLVWCHARDLCINPYHWSKLCKSDSLECVPTSEDRLWSEPGCWAEMAYWEFKERVG-------RLFPVHDNFINVFADLPRGNGFCLKSMSAVSNKHDSVTTKIKNKIGLGITISREDNS-VWVYNRSNYPVFLNS-------HTLDPPTARKLTVYKLLPGYSIKAFDYDKAAKYSPLQEKIQSEEGPFDPYTIRISFTKGWGPKYSRQCITNCPCWLELILV 302
BLAST of SMED-SMAD6/7-1 vs. TrEMBL
Match: A0A443SWF2 (Mothers against decapentaplegic homolog OS=Leptotrombidium deliense OX=299467 GN=B4U80_09881 PE=3 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 8.187e-7 Identity = 76/335 (22.69%), Postives = 133/335 (39.70%), Query Frame = 1 Query: 304 FVYKRKLIKNIIYLMKTNNKSRFLTVQDCCKNILEILSKILAKLNIQQLKIFLEIAQSIHQFQSFSPIIPCIKGCSNLFRYFDIDYIKNILWITFRSSLLSGSNEIKFMSICSNRQDC---INPFHWSLMKTVESMNVDQNILYDSYFFSSIQCNLRIEETIRPTKIITPAISSLSSVFIIYYQSCPSVTTDCKPDSLWQELGICIHQL---NNRFVSL----YNYTTQPIFISSICKEIQDHNFNKH---------DP----YIPVYKILPNHSVNVFSLDQIDTIKLSQTSIPILNSGI--FTVQISFGKGWGRGYSRSSFLYCPCRCEISII 1233 F KR + N ++ ++ R ++ + +LA L+ QL+ LE S +S PC+ +N + + + +R + ++K + C R C INP+HWS + ES+ + + +T+ +I ++ Y+S +V TD S G C+ + N R S+ +N I IS + +N +K+ DP + V+KILP +S+ F ++++ Q I +T++ISF KGWG YSR S + CPC E+ ++ Sbjct: 2 FRSKRGSLLNALWQRSRDHSDR----DGDTASLKSVAFAMLAPLSEHQLRTLLEAIDSKGGERS-----PCV-FVNNSIPDAQVAAPQLLACRLWRWPQVLCDEKLKCLLFCRTRDSCTVCINPYHWSRIAKAESIEC-------------VSADKHCPDTVSWCEIAYWELNERIGRLFPVYESSINVFTDLPHGS-----GFCLKNVDVANKRMESVITRTHNKIGFGIMISREGDSVWVYNRSKYPVFLNSHTLDPPTVRRLTVHKILPGYSIQAFDYEKVEKYLPVQEKIRSEEGPFDPYTIRISFAKGWGPKYSRQSIMSCPCWLEVILV 308
BLAST of SMED-SMAD6/7-1 vs. TrEMBL
Match: A0A0R3W6J8 (MH2 domain-containing protein OS=Taenia asiatica OX=60517 GN=TASK_LOCUS5832 PE=4 SV=1) HSP 1 Score: 59.3066 bits (142), Expect = 4.283e-6 Identity = 46/134 (34.33%), Postives = 65/134 (48.51%), Query Frame = 1 Query: 838 YYQSCPSVTTDCKPDSLWQELGICIHQLNNRFVSLYNYT-TQPIFISSICKEIQDHNFNKHDPYIPVYKILPNHSVNVFSLDQIDTIKLSQT--SIPILNSGIF--TVQISFGKGWGRGYSRSSFLYCPCRCEI 1224 YY S P ++ K GI + L + L N T PIF++S C +Q N D PVY++ P S+ VF + +I +L++ S P +F + IS GKGWG Y R+ F +CP R EI Sbjct: 116 YYPSIPYSSSPTKQRRRLSHEGISLLLLPKGQILLTNKTPATPIFVASPCF-VQQGNLIAGD--WPVYRVAPTCSLVVFDM-RIYEDRLTEVCKSTPWPGKSLFGPVLHISLGKGWGPTYRRTDFTHCPARLEI 245
BLAST of SMED-SMAD6/7-1 vs. Ensembl Cavefish
Match: smad6b (SMAD family member 6 [Source:NCBI gene;Acc:103029602]) HSP 1 Score: 55.8398 bits (133), Expect = 5.088e-8 Identity = 35/100 (35.00%), Postives = 50/100 (50.00%), Query Frame = 1 Query: 934 VSLYNYTTQPIFISSICKEIQDHNFNKHDPYIPVYKILPNHSVNVFSLDQIDTIKLSQTSIPILNSGIF---TVQISFGKGWGRGYSRSSFLYCPCRCEI 1224 V YN + PIF++S E + V K++P +S+ VF ++ + L Q + P L G + +V+ISF KGWG YSR CPC EI Sbjct: 380 VWAYNRSQHPIFVNSPTLEAGPATRG----LLVVRKVMPGYSIKVFDYER-SALLLRQGAEPALPDGPYDPNSVRISFAKGWGPCYSRQFITSCPCWLEI 474
BLAST of SMED-SMAD6/7-1 vs. Ensembl Medaka
Match: smad7 (SMAD family member 7 [Source:NCBI gene;Acc:101165328]) HSP 1 Score: 55.8398 bits (133), Expect = 3.832e-8 Identity = 74/302 (24.50%), Postives = 123/302 (40.73%), Query Frame = 1 Query: 421 ILAKLNIQQLKIFLEIAQSIHQFQSFSPIIPCIKGCSNLFRYFDIDYIKNILWITFRSSLLSGSNEIKFMSICSNRQD------CINPFHWSLMKTVESMNVDQNILYDSYFFSSIQCNLRIEETIRPTKIITPAISSLSSVFIIYYQSCPSVTTDCKPDSLWQELGICIHQL--NNR----------------------FVSLYNYTTQPIFISSICKEIQDHNFNKHDPYIPVYKILPNHSVNVFSLDQIDTIKLSQ----TSIPILNSGIFTVQISFGKGWGRGYSRSSFLYCPCRCEI 1224 +L K+ +QL++ L+ +S +S ++P + + + + L+ FR L S+E+K +S C + C NP H S + +ES + Y +L ++++ R + + V +Y PS+ D D L Q G C+ QL +N+ V +YN + PIFI S + D + V+K+ P S+ F D+ ++++ T P FTVQISF KGWG+ Y+R CPC E+ Sbjct: 62 VLKKIKEKQLEVLLQAVESKGGVRSPCLLLPSKVDAKVGQQSYSLPML---LYKVFRWPDLRHSSELKRLSCCESYGKANPELVCCNPHHMSRLCELESPPPPYSRYPMDYLKPPD--SLALQDSERGYWCVVAYWEEKTRVGRLYSVQEPSL--DIFYD-LPQGNGFCLGQLCSDNKSQLVQMVRSKIGYGIQLTREPDGVWVYNRSCYPIFIKSATLDNPDSR------TLLVHKVFPGFSIKAFDYDKANSLQRPNDHEFTQQPRTG---FTVQISFVKGWGQCYTRQFISSCPCWLEV 346
BLAST of SMED-SMAD6/7-1 vs. Ensembl Medaka
Match: smad7 (SMAD family member 7 [Source:NCBI gene;Acc:101165328]) HSP 1 Score: 50.8322 bits (120), Expect = 1.422e-6 Identity = 34/101 (33.66%), Postives = 49/101 (48.51%), Query Frame = 1 Query: 934 VSLYNYTTQPIFISSICKEIQDHNFNKHDPYIPVYKILPNHSVNVFSLDQIDTIKLSQ----TSIPILNSGIFTVQISFGKGWGRGYSRSSFLYCPCRCEI 1224 V +YN + PIFI S + N + V+K+ P S+ F D+ ++++ T P FTVQISF KGWG+ Y+R CPC E+ Sbjct: 279 VWVYNRSCYPIFIKSATLD------NPDSRTLLVHKVFPGFSIKAFDYDKANSLQRPNDHEFTQQPRTG---FTVQISFVKGWGQCYTRQFISSCPCWLEV 370
BLAST of SMED-SMAD6/7-1 vs. Planmine SMEST
Match: SMESG000002697.1 (SMESG000002697.1) HSP 1 Score: 686.026 bits (1769), Expect = 0.000e+0 Identity = 340/340 (100.00%), Postives = 340/340 (100.00%), Query Frame = 1 Query: 229 MKSNSILNISQDQINQETCLGSWTNFVYKRKLIKNIIYLMKTNNKSRFLTVQDCCKNILEILSKILAKLNIQQLKIFLEIAQSIHQFQSFSPIIPCIKGCSNLFRYFDIDYIKNILWITFRSSLLSGSNEIKFMSICSNRQDCINPFHWSLMKTVESMNVDQNILYDSYFFSSIQCNLRIEETIRPTKIITPAISSLSSVFIIYYQSCPSVTTDCKPDSLWQELGICIHQLNNRFVSLYNYTTQPIFISSICKEIQDHNFNKHDPYIPVYKILPNHSVNVFSLDQIDTIKLSQTSIPILNSGIFTVQISFGKGWGRGYSRSSFLYCPCRCEISIILPDSF 1248 MKSNSILNISQDQINQETCLGSWTNFVYKRKLIKNIIYLMKTNNKSRFLTVQDCCKNILEILSKILAKLNIQQLKIFLEIAQSIHQFQSFSPIIPCIKGCSNLFRYFDIDYIKNILWITFRSSLLSGSNEIKFMSICSNRQDCINPFHWSLMKTVESMNVDQNILYDSYFFSSIQCNLRIEETIRPTKIITPAISSLSSVFIIYYQSCPSVTTDCKPDSLWQELGICIHQLNNRFVSLYNYTTQPIFISSICKEIQDHNFNKHDPYIPVYKILPNHSVNVFSLDQIDTIKLSQTSIPILNSGIFTVQISFGKGWGRGYSRSSFLYCPCRCEISIILPDSF Sbjct: 1 MKSNSILNISQDQINQETCLGSWTNFVYKRKLIKNIIYLMKTNNKSRFLTVQDCCKNILEILSKILAKLNIQQLKIFLEIAQSIHQFQSFSPIIPCIKGCSNLFRYFDIDYIKNILWITFRSSLLSGSNEIKFMSICSNRQDCINPFHWSLMKTVESMNVDQNILYDSYFFSSIQCNLRIEETIRPTKIITPAISSLSSVFIIYYQSCPSVTTDCKPDSLWQELGICIHQLNNRFVSLYNYTTQPIFISSICKEIQDHNFNKHDPYIPVYKILPNHSVNVFSLDQIDTIKLSQTSIPILNSGIFTVQISFGKGWGRGYSRSSFLYCPCRCEISIILPDSF 340 The following BLAST results are available for this feature:
BLAST of SMED-SMAD6/7-1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED-SMAD6/7-1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED-SMAD6/7-1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 3
BLAST of SMED-SMAD6/7-1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 4
BLAST of SMED-SMAD6/7-1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 2
BLAST of SMED-SMAD6/7-1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED-SMAD6/7-1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SMED-SMAD6/7-1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 4
BLAST of SMED-SMAD6/7-1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of SMED-SMAD6/7-1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED-SMAD6/7-1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED-SMAD6/7-1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED-SMAD6/7-1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 2
BLAST of SMED-SMAD6/7-1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 1
Analyses
This transcript is derived from or has results from the following analyses Cross References
External references for this transcript
Sequences
The following sequences are available for this feature:
transcript sequence >SMED30007744 ID=SMED30007744|Name=SMED-SMAD6/7-1|organism=Schmidtea mediterranea sexual|type=transcript|length=1322bpback to top protein sequence of SMED30007744-orf-1 >SMED30007744-orf-1 ID=SMED30007744-orf-1|Name=SMED30007744-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=341bp MKSNSILNISQDQINQETCLGSWTNFVYKRKLIKNIIYLMKTNNKSRFLTback to top Aliases
The feature 'SMED-SMAD6/7-1' has the following synonyms
Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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