G patch domain-containing protein 4

Overview


Name	G patch domain-containing protein 4
Smed ID	SMED30007674
Length (bp)	996

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of G patch domain-containing protein 4 (SMED30007674) t-SNE clustered cells

Violin plots show distribution of expression levels for G patch domain-containing protein 4 (SMED30007674) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of G patch domain-containing protein 4 (SMED30007674) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for G patch domain-containing protein 4 (SMED30007674) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30007674

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 9

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
X1 cell	SMED30007674	h1SMcG0020020	SmedASXL_009925	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
pharynx	SMED30007674	h1SMcG0020020	dd_Smed_v4_1355_1_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
nervous system	SMED30007674	h1SMcG0020020	dd_Smed_v4_1355_1_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
gut	SMED30007674	h1SMcG0020020	dd_Smed_v4_1355_1_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
epidermis	SMED30007674	h1SMcG0020020	dd_Smed_v4_1355_1_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cephalic ganglia	SMED30007674	h1SMcG0020020	dd_Smed_v4_1355_1_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
muscle cell	SMED30007674	h1SMcG0020020	dd_Smed_v4_1355_1_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
neoblast	SMED30007674	h1SMcG0020020	dd_Smed_v4_1355_1_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchymal cell	SMED30007674	h1SMcG0020020	dd_Smed_v4_1355_1_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018

Note: Hover over icons to view figure legend

Homology

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BLAST of G patch domain-containing protein 4 vs. Ensembl Human
Match: GPATCH4 (G-patch domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25982])

HSP 1 Score: 68.5514 bits (166), Expect = 2.270e-12
Identity = 36/106 (33.96%), Postives = 59/106 (55.66%), Query Frame = 1

Query:   49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKE-EQLNLSGVNSLYRSFMKSNTLMKDG 363
            F++  + K+GWT G+GLG+   GITQ ++ TLK D+HG+ +          W+ +F+ +A+NL +        +++ SKE  + N    N LY+ F+K  TL   G
Sbjct:   14 FAEEQLLKHGWTQGKGLGRKENGITQALRVTLKQDTHGVGHDPAKEFTNHWWNELFNKTAANLVVETGQDGVQIRSLSKETTRYNHPKPNLLYQKFVKMATLTSGG 119

[Close]

BLAST of G patch domain-containing protein 4 vs. Ensembl Human
Match: GPATCH4 (G-patch domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25982])

HSP 1 Score: 64.3142 bits (155), Expect = 2.493e-12
Identity = 33/99 (33.33%), Postives = 57/99 (57.58%), Query Frame = 1

Query:   49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKE-EQLNLSGVNSLYRSFMKS 342
            F++  + K+GWT G+GLG+   GITQ ++ TLK D+HG+ +          W+ +F+ +A+NL +        +++ SKE  + N    N LY+ F+K+
Sbjct:   14 FAEEQLLKHGWTQGKGLGRKENGITQALRVTLKQDTHGVGHDPAKEFTNHWWNELFNKTAANLVVETGQDGVQIRSLSKETTRYNHPKPNLLYQKFVKT 112

[Close]

BLAST of G patch domain-containing protein 4 vs. Ensembl Human
Match: GPATCH4 (G-patch domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25982])

HSP 1 Score: 68.5514 bits (166), Expect = 3.002e-12
Identity = 36/106 (33.96%), Postives = 59/106 (55.66%), Query Frame = 1

Query:   49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKE-EQLNLSGVNSLYRSFMKSNTLMKDG 363
            F++  + K+GWT G+GLG+   GITQ ++ TLK D+HG+ +          W+ +F+ +A+NL +        +++ SKE  + N    N LY+ F+K  TL   G
Sbjct:   19 FAEEQLLKHGWTQGKGLGRKENGITQALRVTLKQDTHGVGHDPAKEFTNHWWNELFNKTAANLVVETGQDGVQIRSLSKETTRYNHPKPNLLYQKFVKMATLTSGG 124

[Close]

BLAST of G patch domain-containing protein 4 vs. Ensembl Human
Match: GPATCH4 (G-patch domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25982])

HSP 1 Score: 64.3142 bits (155), Expect = 5.374e-12
Identity = 33/102 (32.35%), Postives = 58/102 (56.86%), Query Frame = 1

Query:   49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKE-EQLNLSGVNSLYRSFMKSNTL 351
            F++  + K+GWT G+GLG+   GITQ ++ TLK D+HG+ +          W+ +F+ +A+NL +        +++ SKE  + N    N LY+ F+K + +
Sbjct:   14 FAEEQLLKHGWTQGKGLGRKENGITQALRVTLKQDTHGVGHDPAKEFTNHWWNELFNKTAANLVVETGQDGVQIRSLSKETTRYNHPKPNLLYQKFVKWDPV 115

[Close]

BLAST of G patch domain-containing protein 4 vs. Ensembl Human
Match: GPATCH4 (G-patch domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25982])

HSP 1 Score: 60.077 bits (144), Expect = 8.082e-10
Identity = 25/74 (33.78%), Postives = 44/74 (59.46%), Query Frame = 1

Query:   49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVV 270
            F++  + K+GWT G+GLG+   GITQ ++ TLK D+HG+ +          W+ +F+ +A+NL +    + T+ 
Sbjct:   14 FAEEQLLKHGWTQGKGLGRKENGITQALRVTLKQDTHGVGHDPAKEFTNHWWNELFNKTAANLVVETGQMATLT 87

[Close]

BLAST of G patch domain-containing protein 4 vs. Ensembl Fly
Match: CG15561 (gene:FBgn0039829 transcript:FBtr0085776)

HSP 1 Score: 67.0106 bits (162), Expect = 3.403e-12
Identity = 37/127 (29.13%), Postives = 63/127 (49.61%), Query Frame = 1

Query:   49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASN--LQITNDNIITVVKTDSKE-----------------EQLNLSGVNSLYRSFMKSNTLMKDGLEI 372
            F++ ++ KYGW  G+GLGK N GI  P+KA LKFD+ GL         +  W   F+ +ASN  +QI  D  ++  +   +E                 ++ + S   + Y +F++++ L + G E+
Sbjct:    3 FAKKILGKYGWKEGDGLGKNNTGIAVPLKAALKFDNAGLGVDRAQEFNDHWWERCFNEAASNVDVQIQQDGQVSTSRRKGEEAVEISTRGFSARKLKKAKEQHASDGKATYDNFLQTSLLTQSGGEV 129

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BLAST of G patch domain-containing protein 4 vs. Ensembl Zebrafish
Match: gpatch4 (G patch domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-041008-158])

HSP 1 Score: 52.373 bits (124), Expect = 1.197e-7
Identity = 31/111 (27.93%), Postives = 59/111 (53.15%), Query Frame = 1

Query:   49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQI-TNDNIITVVKTD--------SKEEQLNLSGVNSLYRSFMKSNTLM 354
            F++  + ++GW  G+GLG+   GI++ IK  +K D  G+ +K+ +      W  +F+ ++S L + +  N + V K+D        +K+ +      + LY  F+KS TL+
Sbjct:   14 FAEEQLLRHGWEKGKGLGRAENGISEAIKVKVKCDKGGMGHKQGEQFSFHWWDHVFNKASSGLVVESGQNGVMVKKSDDSSDGLISNKKPRKAQQAKSMLYGCFVKSATLL 124

[Close]

BLAST of G patch domain-containing protein 4 vs. Ensembl Zebrafish
Match: gpatch4 (G patch domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-041008-158])

HSP 1 Score: 53.5286 bits (127), Expect = 1.545e-7
Identity = 31/111 (27.93%), Postives = 59/111 (53.15%), Query Frame = 1

Query:   49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQI-TNDNIITVVKTD--------SKEEQLNLSGVNSLYRSFMKSNTLM 354
            F++  + ++GW  G+GLG+   GI++ IK  +K D  G+ +K+ +      W  +F+ ++S L + +  N + V K+D        +K+ +      + LY  F+KS TL+
Sbjct:   14 FAEEQLLRHGWEKGKGLGRAENGISEAIKVKVKCDKGGMGHKQGEQFSFHWWDHVFNKASSGLVVESGQNGVMVKKSDDSSDGLISNKKPRKAQQAKSMLYGCFVKSATLL 124

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BLAST of G patch domain-containing protein 4 vs. Ensembl Xenopus
Match: hsp90aa1.1 (heat shock protein 90kDa alpha family class A member 1 [Source:Xenbase;Acc:XB-GENE-495303])

HSP 1 Score: 63.5438 bits (153), Expect = 9.364e-11
Identity = 36/113 (31.86%), Postives = 61/113 (53.98%), Query Frame = 1

Query:   49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITND-NIITVVKTD-------SKEEQLNLSGVNSLYRSFMKSNTLMKDG 363
            F++  M K+GWT G+GLG+   GI++ IK  +K D  G+ +   +      W  +F+ +AS++ +  D + + V +T        +K+ +  LS  N LY  F+KS TL+  G
Sbjct:   14 FAEQQMHKHGWTEGKGLGRRENGISEAIKVKVKCDHAGVGHNSAEQFTFHWWDHVFNKTASSISVEADQDGVKVNRTKDDDAPVTNKKPRKALSNRNMLYGRFVKSATLLPGG 126

[Close]

BLAST of G patch domain-containing protein 4 vs. Ensembl Mouse
Match: Gpatch4 (G patch domain containing 4 [Source:MGI Symbol;Acc:MGI:1913864])

HSP 1 Score: 65.4698 bits (158), Expect = 6.378e-12
Identity = 35/102 (34.31%), Postives = 60/102 (58.82%), Query Frame = 1

Query:   49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKE-EQLNLSGVNSLYRSFMKSNTL 351
            F++  + K+GWT G+GLG+   GITQ +K TLK D+HG+ +       +  WS +F+ +A++L + +      ++  SKE  Q +    + LY+ F+K+ TL
Sbjct:   14 FAEEQLLKHGWTQGKGLGRRENGITQALKVTLKQDNHGVGHDPAKEFTDHWWSDLFNKTAASLVVDSGKDGVQIRRLSKETTQRSHPKPSLLYQKFVKTATL 115

[Close]

BLAST of G patch domain-containing protein 4 vs. Ensembl Mouse
Match: Gpatch4 (G patch domain containing 4 [Source:MGI Symbol;Acc:MGI:1913864])

HSP 1 Score: 65.855 bits (159), Expect = 1.481e-11
Identity = 35/102 (34.31%), Postives = 60/102 (58.82%), Query Frame = 1

Query:   49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKE-EQLNLSGVNSLYRSFMKSNTL 351
            F++  + K+GWT G+GLG+   GITQ +K TLK D+HG+ +       +  WS +F+ +A++L + +      ++  SKE  Q +    + LY+ F+K+ TL
Sbjct:   14 FAEEQLLKHGWTQGKGLGRRENGITQALKVTLKQDNHGVGHDPAKEFTDHWWSDLFNKTAASLVVDSGKDGVQIRRLSKETTQRSHPKPSLLYQKFVKTATL 115

[Close]

Query:   49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKE-EQLNLSGVNSLYRSFMKSNTL 351
            F++  + K+GWT G+GLG+   GITQ +K TLK D+HG+ +       +  WS +F+ +A++L + +      ++  SKE  Q +    + LY+ F+K+ TL
Sbjct:   14 FAEEQLLKHGWTQGKGLGRRENGITQALKVTLKQDNHGVGHDPAKEFTDHWWSDLFNKTAASLVVDSGKDGVQIRRLSKETTQRSHPKPSLLYQKFVKTATL 115

[Close]

Query:   49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKE-EQLNLSGVNSLYRSFMKSNTL 351
            F++  + K+GWT G+GLG+   GITQ +K TLK D+HG+ +       +  WS +F+ +A++L + +      ++  SKE  Q +    + LY+ F+K+ TL
Sbjct:   14 FAEEQLLKHGWTQGKGLGRRENGITQALKVTLKQDNHGVGHDPAKEFTDHWWSDLFNKTAASLVVDSGKDGVQIRRLSKETTQRSHPKPSLLYQKFVKTATL 115

[Close]

BLAST of G patch domain-containing protein 4 vs. UniProt/SwissProt
Match: sp|Q566R3|GPTC4_RAT (G patch domain-containing protein 4 OS=Rattus norvegicus OX=10116 GN=Gpatch4 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.150e-12
Identity = 37/102 (36.27%), Postives = 61/102 (59.80%), Query Frame = 1

Query:   49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKE-EQLNLSGVNSLYRSFMKSNTL 351
            F++  + K+GWT G+GLG+   GITQ +K TLK D+HG+ +       +  WS +F+ +A+NL + +      ++  SKE  Q + S  + LY+ F+K+ TL
Sbjct:   14 FAEEQLLKHGWTQGKGLGRKENGITQALKVTLKQDTHGVGHDPAKEFTDHWWSDLFNKTAANLVVDSGKDGVQIRRLSKETTQRSHSKPSLLYQKFVKTATL 115

[Close]

BLAST of G patch domain-containing protein 4 vs. UniProt/SwissProt
Match: sp|Q5T3I0|GPTC4_HUMAN (G patch domain-containing protein 4 OS=Homo sapiens OX=9606 GN=GPATCH4 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.445e-11
Identity = 36/106 (33.96%), Postives = 59/106 (55.66%), Query Frame = 1

Query:   49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKE-EQLNLSGVNSLYRSFMKSNTLMKDG 363
            F++  + K+GWT G+GLG+   GITQ ++ TLK D+HG+ +          W+ +F+ +A+NL +        +++ SKE  + N    N LY+ F+K  TL   G
Sbjct:   14 FAEEQLLKHGWTQGKGLGRKENGITQALRVTLKQDTHGVGHDPAKEFTNHWWNELFNKTAANLVVETGQDGVQIRSLSKETTRYNHPKPNLLYQKFVKMATLTSGG 119

[Close]

BLAST of G patch domain-containing protein 4 vs. UniProt/SwissProt
Match: sp|Q2KJE1|GPTC4_BOVIN (G patch domain-containing protein 4 OS=Bos taurus OX=9913 GN=GPATCH4 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.809e-11
Identity = 32/106 (30.19%), Postives = 61/106 (57.55%), Query Frame = 1

Query:   49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQI-TNDNIITVVKTDSKEEQLNLSGVNSLYRSFMKSNTLMKDG 363
            F++  + K+GWT G+GLG+   GITQ ++ TLK D++G+ +          W+ +F+ +A+NL + T  + + + +   +  + + +  N LY+ F+K+ TL   G
Sbjct:   14 FAEEQLLKHGWTQGKGLGRKENGITQALRVTLKQDTYGVGHDPAKEFTNHWWNDLFNKTAANLVVETRQDGVQIRRLSKETTRQDHAKPNLLYQKFVKTATLTSSG 119

[Close]

BLAST of G patch domain-containing protein 4 vs. UniProt/SwissProt
Match: sp|Q3TFK5|GPTC4_MOUSE (G patch domain-containing protein 4 OS=Mus musculus OX=10090 GN=Gpatch4 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.036e-10
Identity = 35/102 (34.31%), Postives = 60/102 (58.82%), Query Frame = 1

Query:   49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKE-EQLNLSGVNSLYRSFMKSNTL 351
            F++  + K+GWT G+GLG+   GITQ +K TLK D+HG+ +       +  WS +F+ +A++L + +      ++  SKE  Q +    + LY+ F+K+ TL
Sbjct:   14 FAEEQLLKHGWTQGKGLGRRENGITQALKVTLKQDNHGVGHDPAKEFTDHWWSDLFNKTAASLVVDSGKDGVQIRRLSKETTQRSHPKPSLLYQKFVKTATL 115

[Close]

BLAST of G patch domain-containing protein 4 vs. UniProt/SwissProt
Match: sp|Q6P859|GPTC4_XENTR (G patch domain-containing protein 4 OS=Xenopus tropicalis OX=8364 GN=gpatch4 PE=2 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 5.195e-10
Identity = 36/113 (31.86%), Postives = 61/113 (53.98%), Query Frame = 1

Query:   49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITND-NIITVVKTD-------SKEEQLNLSGVNSLYRSFMKSNTLMKDG 363
            F++  M K+GWT G+GLG+   GI++ IK  +K D  G+ +   +      W  +F+ +AS++ +  D + + V +T        +K+ +  LS  N LY  F+KS TL+  G
Sbjct:   14 FAEQQMHKHGWTEGKGLGRRENGISEAIKVKVKCDHAGVGHNSAEQFTFHWWDHVFNKTASSISVEADQDGVKVNRTKDDDAPVTNKKPRKALSNRNMLYGRFVKSATLLPGG 126

[Close]

BLAST of G patch domain-containing protein 4 vs. TrEMBL
Match: E0W296 (G patch domain-containing protein, putative OS=Pediculus humanus subsp. corporis OX=121224 GN=8232663 PE=4 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 7.813e-13
Identity = 39/111 (35.14%), Postives = 65/111 (58.56%), Query Frame = 1

Query:   49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITND-NIITVVKTDSKEE---------QLNLSGVNSLYRSFMKSNTL 351
            F++  ++KYGW  G+GLGK   GI++PIK TLKFD  G+ + + D N ++ W  ++  +A +++I  D N I  VK   K+E         +  +S  N +Y+ F+K++ L
Sbjct:    3 FAKKELEKYGWKSGDGLGKNKTGISKPIKTTLKFDKSGIGHNQFDVN-DTWWQKVYDDAAKSIEIKKDSNEIVFVKKKKKDETNDDRQKKKKAKISDKNDVYKGFIKTSEL 112

[Close]

BLAST of G patch domain-containing protein 4 vs. TrEMBL
Match: A0A1B0DAS3 (G-patch domain-containing protein OS=Phlebotomus papatasi OX=29031 PE=4 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.789e-12
Identity = 45/121 (37.19%), Postives = 72/121 (59.50%), Query Frame = 1

Query:   49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESK---WSTMFSSSASNLQI-TNDNIITVVKTDSKEEQLNLSGV----------NSLYRSFMKSNTLMKDGLE 369
            F+QS+++KYGW+ G+GLGK N GI +P+KA LKFD+ GL +   D + E K   W   ++S+ASNL + T+ + + +   D +  +++ SG           +S Y +F+K  TL  +G E
Sbjct:    3 FAQSILQKYGWSEGQGLGKHNSGIAKPLKANLKFDTSGLGH---DGSAEFKNHWWENAYNSAASNLDVKTDGDSVKMELKDGESIKISTSGYTKPNQNDDTKSSRYGNFVKCATLTSEGQE 120

[Close]

BLAST of G patch domain-containing protein 4 vs. TrEMBL
Match: A0A087T732 (G patch domain-containing protein 4 (Fragment) OS=Stegodyphus mimosarum OX=407821 GN=X975_25998 PE=4 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.097e-12
Identity = 34/107 (31.78%), Postives = 61/107 (57.01%), Query Frame = 1

Query:   43 NAFSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKEEQ----LNLSGVNSLYRSFMKSNTL 351
            N F +  ++KYGWT G+GLGK   GIT+PIK+ LKFD+HG+ +      +   W   F+ ++S +Q+  +     + +D+ + +    L +S    ++  F+K+ T+
Sbjct:    2 NEFGRKQLEKYGWTKGKGLGKEENGITKPIKSKLKFDTHGIGHDSSKVWMSRWWCDAFNEASSRIQVIKNETGVSITSDNGQLKSTPLLTISSAAGMHGKFVKAETM 108

[Close]

BLAST of G patch domain-containing protein 4 vs. TrEMBL
Match: A0A0P6J915 (G patch domain-containing protein 4 isoform 1 OS=Heterocephalus glaber OX=10181 GN=GPATCH4 PE=4 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.277e-11
Identity = 36/102 (35.29%), Postives = 60/102 (58.82%), Query Frame = 1

Query:   49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQI-TNDNIITVVKTDSKEEQLNLSGVNSLYRSFMKSNTL 351
            F++  + K+GWT G+GLG+   GITQP+K TLK D+HG+ +          W+ +F+ +A+NL + T  + + + +   +  Q N    N LY+ F+K+ TL
Sbjct:   14 FAEEQLLKHGWTQGKGLGRKENGITQPLKVTLKQDTHGVGHDPAKEFTNHWWNELFNKTAANLVVETGQDGVQIRRLSKETTQHNHPKPNLLYQKFVKTATL 115

[Close]

BLAST of G patch domain-containing protein 4 vs. TrEMBL
Match: G1PDZ8 (G-patch domain containing 4 OS=Myotis lucifugus OX=59463 GN=GPATCH4 PE=4 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.307e-11
Identity = 35/106 (33.02%), Postives = 62/106 (58.49%), Query Frame = 1

Query:   49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQI-TNDNIITVVKTDSKEEQLNLSGVNSLYRSFMKSNTLMKDG 363
            F++  + K+GWTPG+GLG+   GITQ ++ TLK D+HG+ +          W+ +F+ +A++L + T  + + + +   +  + N    N LY+ F+K+ TL  DG
Sbjct:   14 FAEEQLLKHGWTPGKGLGRKENGITQALRVTLKQDTHGVGHDPAKEFTNHWWNELFNKTAASLVVETKQDGVQIRRLPKETTRHNHPKPNMLYQKFVKTATLTSDG 119

[Close]

BLAST of G patch domain-containing protein 4 vs. Ensembl Cavefish
Match: gpatch4 (G patch domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-041008-158])

HSP 1 Score: 55.0694 bits (131), Expect = 1.083e-8
Identity = 34/112 (30.36%), Postives = 58/112 (51.79%), Query Frame = 1

Query:   46 AFSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKEEQLNLSG---------VNSLYRSFMKSNTLM 354
            +F++  M ++GW   +GLGK   GI +PIK  +K D  G+ +K+ +      W  +F+ ++S L + +     VVK  + EE+  +S           + LY  F+KS TL+
Sbjct:    9 SFAEQQMLRHGWEQ-KGLGKEGNGICEPIKVKVKCDKGGVGHKQSEQFTFHWWDHVFNKASSGLDVESGQDGVVVKKKNGEEEGMISNKKPRKAMFKKSGLYGGFVKSATLL 119

[Close]

BLAST of G patch domain-containing protein 4 vs. Ensembl Sea Lamprey
Match: gpatch4 (G patch domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-041008-158])

HSP 1 Score: 49.6766 bits (117), Expect = 3.408e-7
Identity = 30/114 (26.32%), Postives = 60/114 (52.63%), Query Frame = 1

Query:   49 FSQSLMKKYGWT--PGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVV---KTDSKEEQL--------NLSGVNSLYRSFMKSNTL 351
            F+++ M K+GWT   G+GLG+   G  + +K  +K D+ G+ +   +      W  +F+ +A+++++        V   ++D  EE +        +LS  ++LY +F+K+ TL
Sbjct:   14 FAEAQMLKHGWTREAGKGLGRFENGRAEAVKVKVKHDTAGIGHDMAEQFTFHWWDHVFNKAAASIEVEGTEEGAKVMGNRSDGAEEPISNRKPRKAHLSTTHALYGNFVKAATL 127

[Close]

BLAST of G patch domain-containing protein 4 vs. Ensembl Sea Lamprey
Match: gpatch4 (G patch domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-041008-158])

HSP 1 Score: 49.6766 bits (117), Expect = 4.235e-7
Identity = 30/114 (26.32%), Postives = 60/114 (52.63%), Query Frame = 1

Query:   49 FSQSLMKKYGWT--PGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVV---KTDSKEEQL--------NLSGVNSLYRSFMKSNTL 351
            F+++ M K+GWT   G+GLG+   G  + +K  +K D+ G+ +   +      W  +F+ +A+++++        V   ++D  EE +        +LS  ++LY +F+K+ TL
Sbjct:   15 FAEAQMLKHGWTREAGKGLGRFENGRAEAVKVKVKHDTAGIGHDMAEQFTFHWWDHVFNKAAASIEVEGTEEGAKVMGNRSDGAEEPISNRKPRKAHLSTTHALYGNFVKAATL 128

[Close]

BLAST of G patch domain-containing protein 4 vs. Ensembl Medaka
Match: ENSORLT00000028847.1 (pep primary_assembly:ASM223467v1:16:28466007:28469016:-1 gene:ENSORLG00000016102.2 transcript:ENSORLT00000028847.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 54.299 bits (129), Expect = 9.376e-9
Identity = 24/85 (28.24%), Postives = 47/85 (55.29%), Query Frame = 1

Query:   46 AFSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKEEQLN 300
            AF++  + ++GW  G+GLG+   GI++PIK  +K    G+ ++E +      W  +F+ ++S+LQ+    + + +      E LN
Sbjct:   12 AFAEQQLLRHGWEHGKGLGRAENGISEPIKVKVKCGKGGVGHREGEQFSFHWWDHVFNKASSSLQVQAHQVGSTLSHHKTAETLN 96

[Close]

BLAST of G patch domain-containing protein 4 vs. Ensembl Medaka
Match: ENSORLT00000020150.2 (pep primary_assembly:ASM223467v1:16:28467303:28469016:-1 gene:ENSORLG00000016102.2 transcript:ENSORLT00000020150.2 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 50.447 bits (119), Expect = 8.810e-8
Identity = 21/71 (29.58%), Postives = 42/71 (59.15%), Query Frame = 1

Query:   46 AFSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNI 258
            AF++  + ++GW  G+GLG+   GI++PIK  +K    G+ ++E +      W  +F+ ++S+LQ+    +
Sbjct:   12 AFAEQQLLRHGWEHGKGLGRAENGISEPIKVKVKCGKGGVGHREGEQFSFHWWDHVFNKASSSLQVQAHQV 82

[Close]

BLAST of G patch domain-containing protein 4 vs. Planmine SMEST
Match: SMESG000035189.1 (SMESG000035189.1)

HSP 1 Score: 453.751 bits (1166), Expect = 1.412e-161
Identity = 297/300 (99.00%), Postives = 298/300 (99.33%), Query Frame = 1

Query:   37 MYNAFSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKEEQLNLSGVNSLYRSFMKSNTLMKDGLEIXXXXXXXXXXXXNESESVIKDESDVKRKKIQNSSLETSENVNMEVQESGDQXXXXXXXXXXXXXXXLVNNEVSKIICEVEPXXXXXXXXXXXXXXXXXXAINTETKIEQIEVAQXXXXXXFEAKTVEITDGXXXXXXXXXXXNNLSEKQILITQDSTSMTCHLSARSGITMSGKLARIKKLHEQELLR 936
            MYNAFSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKEEQLNLSGVNSLYRSFMKSNTLMKDGLEIKAKKLKRHKRKLNESESV KDESDVKRKKIQNSSLET+ENVNMEVQESGDQKVEKTKKKKRKDSKKLVNNEVSKIICEVEPKQEKRKKKSKNIISEISEAINTETKIEQIEVAQKPKKKKFEAKTVEITDGKIKDKKKKK KNNLSEKQILITQDSTSMTCHLSARSGITMSGKLARIKKLHEQELLR
Sbjct:    1 MYNAFSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKEEQLNLSGVNSLYRSFMKSNTLMKDGLEIKAKKLKRHKRKLNESESVSKDESDVKRKKIQNSSLETNENVNMEVQESGDQKVEKTKKKKRKDSKKLVNNEVSKIICEVEPKQEKRKKKSKNIISEISEAINTETKIEQIEVAQKPKKKKFEAKTVEITDGKIKDKKKKKSKNNLSEKQILITQDSTSMTCHLSARSGITMSGKLARIKKLHEQELLR 300

[Close]

BLAST of G patch domain-containing protein 4 vs. Planmine SMEST
Match: SMESG000035189.1 (SMESG000035189.1)

HSP 1 Score: 420.624 bits (1080), Expect = 1.100e-148
Identity = 279/300 (93.00%), Postives = 282/300 (94.00%), Query Frame = 1

Query:   37 MYNAFSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKEEQLNLSGVNSLYRSFMKSNTLMKDGLEIXXXXXXXXXXXXNESESVIKDESDVKRKKIQNSSLETSENVNMEVQESGDQXXXXXXXXXXXXXXXLVNNEVSKIICEVEPXXXXXXXXXXXXXXXXXXAINTETKIEQIEVAQXXXXXXFEAKTVEITDGXXXXXXXXXXXNNLSEKQILITQDSTSMTCHLSARSGITMSGKLARIKKLHEQELLR 936
            MYNAFSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKEEQLNLSGVNSLYRSFMKSNTLMKDGLEIKAKKLKRHKRKLNESESV KDESDVKRKKIQNSSLET+ENVNMEVQESGDQKVEKTKKKKR                ++EPKQEKRKKKSKNIISEISEAINTETKIEQIEVAQKPKKKKFEAKTVEITDGKIKDKKKKK KNNLSEKQILITQDSTSMTCHLSARSGITMSGKLARIKKLHEQELLR
Sbjct:    1 MYNAFSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKEEQLNLSGVNSLYRSFMKSNTLMKDGLEIKAKKLKRHKRKLNESESVSKDESDVKRKKIQNSSLETNENVNMEVQESGDQKVEKTKKKKR---------------KDIEPKQEKRKKKSKNIISEISEAINTETKIEQIEVAQKPKKKKFEAKTVEITDGKIKDKKKKKSKNNLSEKQILITQDSTSMTCHLSARSGITMSGKLARIKKLHEQELLR 285

[Close]

BLAST of G patch domain-containing protein 4 vs. Planmine SMEST
Match: SMESG000035189.1 (SMESG000035189.1)

HSP 1 Score: 400.979 bits (1029), Expect = 3.986e-141
Identity = 270/291 (92.78%), Postives = 273/291 (93.81%), Query Frame = 1

Query:   64 MKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKEEQLNLSGVNSLYRSFMKSNTLMKDGLEIXXXXXXXXXXXXNESESVIKDESDVKRKKIQNSSLETSENVNMEVQESGDQXXXXXXXXXXXXXXXLVNNEVSKIICEVEPXXXXXXXXXXXXXXXXXXAINTETKIEQIEVAQXXXXXXFEAKTVEITDGXXXXXXXXXXXNNLSEKQILITQDSTSMTCHLSARSGITMSGKLARIKKLHEQELLR 936
            MKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKEEQLNLSGVNSLYRSFMKSNTLMKDGLEIKAKKLKRHKRKLNESESV KDESDVKRKKIQNSSLET+ENVNMEVQESGDQKVEKTKKKKR                ++EPKQEKRKKKSKNIISEISEAINTETKIEQIEVAQKPKKKKFEAKTVEITDGKIKDKKKKK KNNLSEKQILITQDSTSMTCHLSARSGITMSGKLARIKKLHEQELLR
Sbjct:    1 MKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKEEQLNLSGVNSLYRSFMKSNTLMKDGLEIKAKKLKRHKRKLNESESVSKDESDVKRKKIQNSSLETNENVNMEVQESGDQKVEKTKKKKR---------------KDIEPKQEKRKKKSKNIISEISEAINTETKIEQIEVAQKPKKKKFEAKTVEITDGKIKDKKKKKSKNNLSEKQILITQDSTSMTCHLSARSGITMSGKLARIKKLHEQELLR 276

The following BLAST results are available for this feature:

BLAST of G patch domain-containing protein 4 vs. Ensembl Human
BLAST of G patch domain-containing protein 4 vs. Ensembl Celegans
BLAST of G patch domain-containing protein 4 vs. Ensembl Fly
BLAST of G patch domain-containing protein 4 vs. Ensembl Zebrafish
BLAST of G patch domain-containing protein 4 vs. Ensembl Xenopus
BLAST of G patch domain-containing protein 4 vs. Ensembl Mouse
BLAST of G patch domain-containing protein 4 vs. UniProt/SwissProt
BLAST of G patch domain-containing protein 4 vs. TrEMBL
BLAST of G patch domain-containing protein 4 vs. Ensembl Cavefish
BLAST of G patch domain-containing protein 4 vs. Ensembl Sea Lamprey
BLAST of G patch domain-containing protein 4 vs. Ensembl Yeast
BLAST of G patch domain-containing protein 4 vs. Ensembl Nematostella
BLAST of G patch domain-containing protein 4 vs. Ensembl Medaka
BLAST of G patch domain-containing protein 4 vs. Planmine SMEST

BLAST of G patch domain-containing protein 4 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
GPATCH4	2.270e-12	33.96	G-patch domain containing 4 [Source:HGNC Symbol;Ac...	[more]
GPATCH4	2.493e-12	33.33	G-patch domain containing 4 [Source:HGNC Symbol;Ac...	[more]
GPATCH4	3.002e-12	33.96	G-patch domain containing 4 [Source:HGNC Symbol;Ac...	[more]
GPATCH4	5.374e-12	32.35	G-patch domain containing 4 [Source:HGNC Symbol;Ac...	[more]
GPATCH4	8.082e-10	33.78	G-patch domain containing 4 [Source:HGNC Symbol;Ac...	[more]

BLAST of G patch domain-containing protein 4 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of G patch domain-containing protein 4 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 1


Match Name	E-value	Identity	Description
CG15561	3.403e-12	29.13	gene:FBgn0039829 transcript:FBtr0085776	[more]

BLAST of G patch domain-containing protein 4 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 2


Match Name	E-value	Identity	Description
gpatch4	1.197e-7	27.93	G patch domain containing 4 [Source:ZFIN;Acc:ZDB-G...	[more]
gpatch4	1.545e-7	27.93	G patch domain containing 4 [Source:ZFIN;Acc:ZDB-G...	[more]

BLAST of G patch domain-containing protein 4 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 1


Match Name	E-value	Identity	Description
hsp90aa1.1	9.364e-11	31.86	heat shock protein 90kDa alpha family class A memb...	[more]

BLAST of G patch domain-containing protein 4 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 4


Match Name	E-value	Identity	Description
Gpatch4	6.378e-12	34.31	G patch domain containing 4 [Source:MGI Symbol;Acc...	[more]
Gpatch4	1.481e-11	34.31	G patch domain containing 4 [Source:MGI Symbol;Acc...	[more]
Gpatch4	1.481e-11	34.31	G patch domain containing 4 [Source:MGI Symbol;Acc...	[more]
Gpatch4	1.481e-11	34.31	G patch domain containing 4 [Source:MGI Symbol;Acc...	[more]

BLAST of G patch domain-containing protein 4 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q566R3\|GPTC4_RAT	4.150e-12	36.27	G patch domain-containing protein 4 OS=Rattus norv...	[more]
sp\|Q5T3I0\|GPTC4_HUMAN	1.445e-11	33.96	G patch domain-containing protein 4 OS=Homo sapien...	[more]
sp\|Q2KJE1\|GPTC4_BOVIN	4.809e-11	30.19	G patch domain-containing protein 4 OS=Bos taurus ...	[more]
sp\|Q3TFK5\|GPTC4_MOUSE	1.036e-10	34.31	G patch domain-containing protein 4 OS=Mus musculu...	[more]
sp\|Q6P859\|GPTC4_XENTR	5.195e-10	31.86	G patch domain-containing protein 4 OS=Xenopus tro...	[more]

BLAST of G patch domain-containing protein 4 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
E0W296	7.813e-13	35.14	G patch domain-containing protein, putative OS=Ped...	[more]
A0A1B0DAS3	2.789e-12	37.19	G-patch domain-containing protein OS=Phlebotomus p...	[more]
A0A087T732	5.097e-12	31.78	G patch domain-containing protein 4 (Fragment) OS=...	[more]
A0A0P6J915	2.277e-11	35.29	G patch domain-containing protein 4 isoform 1 OS=H...	[more]
G1PDZ8	2.307e-11	33.02	G-patch domain containing 4 OS=Myotis lucifugus OX...	[more]

BLAST of G patch domain-containing protein 4 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1


Match Name	E-value	Identity	Description
gpatch4	1.083e-8	30.36	G patch domain containing 4 [Source:ZFIN;Acc:ZDB-G...	[more]

BLAST of G patch domain-containing protein 4 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 2


Match Name	E-value	Identity	Description
gpatch4	3.408e-7	26.32	G patch domain containing 4 [Source:ZFIN;Acc:ZDB-G...	[more]
gpatch4	4.235e-7	26.32	G patch domain containing 4 [Source:ZFIN;Acc:ZDB-G...	[more]

BLAST of G patch domain-containing protein 4 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of G patch domain-containing protein 4 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of G patch domain-containing protein 4 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 2


Match Name	E-value	Identity	Description
ENSORLT00000028847.1	9.376e-9	28.24	pep primary_assembly:ASM223467v1:16:28466007:28469...	[more]
ENSORLT00000020150.2	8.810e-8	29.58	pep primary_assembly:ASM223467v1:16:28467303:28469...	[more]

BLAST of G patch domain-containing protein 4 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3


Match Name	E-value	Identity	Description
SMESG000035189.1	1.412e-161	99.00	SMESG000035189.1	[more]
SMESG000035189.1	1.100e-148	93.00	SMESG000035189.1	[more]
SMESG000035189.1	3.986e-141	92.78	SMESG000035189.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30007674 ID=SMED30007674|Name=G patch domain-containing protein 4|organism=Schmidtea mediterranea sexual|type=transcript|length=996bp
TTTTAGTTTTTTTAGGTTTTTATTCAAATTTAATAAATGTATAATGCTTT
CTCTCAATCTCTTATGAAAAAGTATGGTTGGACTCCGGGAGAAGGACTTG
GAAAAACAAATCAGGGTATTACTCAACCTATTAAAGCAACATTAAAATTC
GACTCACATGGGCTATCTTACAAAGAGATTGATGCAAACCTTGAATCAAA
ATGGTCAACAATGTTTAGTTCCAGTGCTTCAAATTTACAAATTACTAATG
ATAATATTATAACTGTTGTGAAAACAGATTCTAAAGAAGAGCAATTAAAT
TTATCTGGAGTCAATAGTTTATATAGAAGTTTTATGAAGTCAAACACGTT
AATGAAAGATGGACTGGAAATTAAAGCAAAAAAGCTGAAAAGGCATAAAC
GAAAACTGAATGAAAGCGAATCCGTTATTAAAGACGAATCAGATGTTAAA
AGGAAAAAAATACAAAATTCATCACTTGAAACTAGTGAGAATGTTAATAT
GGAAGTACAGGAATCTGGTGATCAGAAAGTTGAAAAAACCAAAAAGAAAA
AAAGGAAAGACAGTAAAAAATTAGTTAATAATGAAGTTAGTAAAATAATT
TGTGAAGTCGAACCTAAACAGGAGAAAAGAAAAAAGAAATCAAAAAATAT
TATCAGTGAAATAAGTGAAGCTATTAATACAGAAACAAAAATTGAGCAAA
TCGAAGTAGCACAGAAACCAAAAAAGAAAAAATTTGAAGCTAAAACCGTC
GAAATTACTGATGGAAAAATAAAAGATAAGAAAAAAAAGAAAAAGAAAAA
CAATTTATCAGAGAAACAAATTCTAATCACCCAGGATTCGACATCAATGA
CGTGCCATTTGTCAGCTCGGTCTGGAATCACAATGTCTGGAAAATTAGCG
AGAATTAAGAAGCTCCACGAGCAAGAACTGCTCAGAAATATTTCTATAAA
ATCTGTTAATTGAAATATAATTTTATTTTCTTTTGTAAAAAAGATC

protein sequence of SMED30007674-orf-1

>SMED30007674-orf-1 ID=SMED30007674-orf-1|Name=SMED30007674-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=309bp
MYNAFSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDA
NLESKWSTMFSSSASNLQITNDNIITVVKTDSKEEQLNLSGVNSLYRSFM
KSNTLMKDGLEIKAKKLKRHKRKLNESESVIKDESDVKRKKIQNSSLETS
ENVNMEVQESGDQKVEKTKKKKRKDSKKLVNNEVSKIICEVEPKQEKRKK
KSKNIISEISEAINTETKIEQIEVAQKPKKKKFEAKTVEITDGKIKDKKK
KKKKNNLSEKQILITQDSTSMTCHLSARSGITMSGKLARIKKLHEQELLR
NISIKSVN*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000026	gut
PLANA:0000429	neoblast
PLANA:0002032	epidermal cell
PLANA:0002109	X1 cell

Vocabulary: **INTERPRO**
Term	Definition
IPR000467	G_patch_dom

Vocabulary: **molecular function**
Term	Definition
GO:0003676	nucleic acid binding

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 107..127
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..145
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..178
None	No IPR available	PANTHER	PTHR23149:SF8	G PATCH DOMAIN-CONTAINING PROTEIN 4	coord: 3..261
None	No IPR available	PANTHER	PTHR23149	G PATCH DOMAIN CONTAINING PROTEIN	coord: 3..261
IPR000467	G-patch domain	SMART	SM00443	G-patch_5	coord: 1..46 e-value: 1.4E-10 score: 51.1
IPR000467	G-patch domain	PFAM	PF01585	G-patch	coord: 5..45 e-value: 2.9E-13 score: 49.5
IPR000467	G-patch domain	PROSITE	PS50174	G_PATCH	coord: 2..48 score: 13.844

Main menu

G patch domain-containing protein 4

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 9

Owlery

blazegraph-runner