G patch domain-containing protein 4

Overview
NameG patch domain-containing protein 4
Smed IDSMED30007674
Length (bp)996
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of G patch domain-containing protein 4 (SMED30007674) t-SNE clustered cells

Violin plots show distribution of expression levels for G patch domain-containing protein 4 (SMED30007674) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of G patch domain-containing protein 4 (SMED30007674) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for G patch domain-containing protein 4 (SMED30007674) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30007674

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 9

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30007674h1SMcG0020020 SmedASXL_009925SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
pharynxSMED30007674h1SMcG0020020 dd_Smed_v4_1355_1_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30007674h1SMcG0020020 dd_Smed_v4_1355_1_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30007674h1SMcG0020020 dd_Smed_v4_1355_1_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30007674h1SMcG0020020 dd_Smed_v4_1355_1_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30007674h1SMcG0020020 dd_Smed_v4_1355_1_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30007674h1SMcG0020020 dd_Smed_v4_1355_1_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30007674h1SMcG0020020 dd_Smed_v4_1355_1_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30007674h1SMcG0020020 dd_Smed_v4_1355_1_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of G patch domain-containing protein 4 vs. Ensembl Human
Match: GPATCH4 (G-patch domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25982])

HSP 1 Score: 68.5514 bits (166), Expect = 2.270e-12
Identity = 36/106 (33.96%), Postives = 59/106 (55.66%), Query Frame = 1
Query:   49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKE-EQLNLSGVNSLYRSFMKSNTLMKDG 363
            F++  + K+GWT G+GLG+   GITQ ++ TLK D+HG+ +          W+ +F+ +A+NL +        +++ SKE  + N    N LY+ F+K  TL   G
Sbjct:   14 FAEEQLLKHGWTQGKGLGRKENGITQALRVTLKQDTHGVGHDPAKEFTNHWWNELFNKTAANLVVETGQDGVQIRSLSKETTRYNHPKPNLLYQKFVKMATLTSGG 119          
BLAST of G patch domain-containing protein 4 vs. Ensembl Human
Match: GPATCH4 (G-patch domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25982])

HSP 1 Score: 64.3142 bits (155), Expect = 2.493e-12
Identity = 33/99 (33.33%), Postives = 57/99 (57.58%), Query Frame = 1
Query:   49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKE-EQLNLSGVNSLYRSFMKS 342
            F++  + K+GWT G+GLG+   GITQ ++ TLK D+HG+ +          W+ +F+ +A+NL +        +++ SKE  + N    N LY+ F+K+
Sbjct:   14 FAEEQLLKHGWTQGKGLGRKENGITQALRVTLKQDTHGVGHDPAKEFTNHWWNELFNKTAANLVVETGQDGVQIRSLSKETTRYNHPKPNLLYQKFVKT 112          
BLAST of G patch domain-containing protein 4 vs. Ensembl Human
Match: GPATCH4 (G-patch domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25982])

HSP 1 Score: 68.5514 bits (166), Expect = 3.002e-12
Identity = 36/106 (33.96%), Postives = 59/106 (55.66%), Query Frame = 1
Query:   49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKE-EQLNLSGVNSLYRSFMKSNTLMKDG 363
            F++  + K+GWT G+GLG+   GITQ ++ TLK D+HG+ +          W+ +F+ +A+NL +        +++ SKE  + N    N LY+ F+K  TL   G
Sbjct:   19 FAEEQLLKHGWTQGKGLGRKENGITQALRVTLKQDTHGVGHDPAKEFTNHWWNELFNKTAANLVVETGQDGVQIRSLSKETTRYNHPKPNLLYQKFVKMATLTSGG 124          
BLAST of G patch domain-containing protein 4 vs. Ensembl Human
Match: GPATCH4 (G-patch domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25982])

HSP 1 Score: 64.3142 bits (155), Expect = 5.374e-12
Identity = 33/102 (32.35%), Postives = 58/102 (56.86%), Query Frame = 1
Query:   49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKE-EQLNLSGVNSLYRSFMKSNTL 351
            F++  + K+GWT G+GLG+   GITQ ++ TLK D+HG+ +          W+ +F+ +A+NL +        +++ SKE  + N    N LY+ F+K + +
Sbjct:   14 FAEEQLLKHGWTQGKGLGRKENGITQALRVTLKQDTHGVGHDPAKEFTNHWWNELFNKTAANLVVETGQDGVQIRSLSKETTRYNHPKPNLLYQKFVKWDPV 115          
BLAST of G patch domain-containing protein 4 vs. Ensembl Human
Match: GPATCH4 (G-patch domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25982])

HSP 1 Score: 60.077 bits (144), Expect = 8.082e-10
Identity = 25/74 (33.78%), Postives = 44/74 (59.46%), Query Frame = 1
Query:   49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVV 270
            F++  + K+GWT G+GLG+   GITQ ++ TLK D+HG+ +          W+ +F+ +A+NL +    + T+ 
Sbjct:   14 FAEEQLLKHGWTQGKGLGRKENGITQALRVTLKQDTHGVGHDPAKEFTNHWWNELFNKTAANLVVETGQMATLT 87          
BLAST of G patch domain-containing protein 4 vs. Ensembl Fly
Match: CG15561 (gene:FBgn0039829 transcript:FBtr0085776)

HSP 1 Score: 67.0106 bits (162), Expect = 3.403e-12
Identity = 37/127 (29.13%), Postives = 63/127 (49.61%), Query Frame = 1
Query:   49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASN--LQITNDNIITVVKTDSKE-----------------EQLNLSGVNSLYRSFMKSNTLMKDGLEI 372
            F++ ++ KYGW  G+GLGK N GI  P+KA LKFD+ GL         +  W   F+ +ASN  +QI  D  ++  +   +E                 ++ + S   + Y +F++++ L + G E+
Sbjct:    3 FAKKILGKYGWKEGDGLGKNNTGIAVPLKAALKFDNAGLGVDRAQEFNDHWWERCFNEAASNVDVQIQQDGQVSTSRRKGEEAVEISTRGFSARKLKKAKEQHASDGKATYDNFLQTSLLTQSGGEV 129          
BLAST of G patch domain-containing protein 4 vs. Ensembl Zebrafish
Match: gpatch4 (G patch domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-041008-158])

HSP 1 Score: 52.373 bits (124), Expect = 1.197e-7
Identity = 31/111 (27.93%), Postives = 59/111 (53.15%), Query Frame = 1
Query:   49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQI-TNDNIITVVKTD--------SKEEQLNLSGVNSLYRSFMKSNTLM 354
            F++  + ++GW  G+GLG+   GI++ IK  +K D  G+ +K+ +      W  +F+ ++S L + +  N + V K+D        +K+ +      + LY  F+KS TL+
Sbjct:   14 FAEEQLLRHGWEKGKGLGRAENGISEAIKVKVKCDKGGMGHKQGEQFSFHWWDHVFNKASSGLVVESGQNGVMVKKSDDSSDGLISNKKPRKAQQAKSMLYGCFVKSATLL 124          
BLAST of G patch domain-containing protein 4 vs. Ensembl Zebrafish
Match: gpatch4 (G patch domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-041008-158])

HSP 1 Score: 53.5286 bits (127), Expect = 1.545e-7
Identity = 31/111 (27.93%), Postives = 59/111 (53.15%), Query Frame = 1
Query:   49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQI-TNDNIITVVKTD--------SKEEQLNLSGVNSLYRSFMKSNTLM 354
            F++  + ++GW  G+GLG+   GI++ IK  +K D  G+ +K+ +      W  +F+ ++S L + +  N + V K+D        +K+ +      + LY  F+KS TL+
Sbjct:   14 FAEEQLLRHGWEKGKGLGRAENGISEAIKVKVKCDKGGMGHKQGEQFSFHWWDHVFNKASSGLVVESGQNGVMVKKSDDSSDGLISNKKPRKAQQAKSMLYGCFVKSATLL 124          
BLAST of G patch domain-containing protein 4 vs. Ensembl Xenopus
Match: hsp90aa1.1 (heat shock protein 90kDa alpha family class A member 1 [Source:Xenbase;Acc:XB-GENE-495303])

HSP 1 Score: 63.5438 bits (153), Expect = 9.364e-11
Identity = 36/113 (31.86%), Postives = 61/113 (53.98%), Query Frame = 1
Query:   49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITND-NIITVVKTD-------SKEEQLNLSGVNSLYRSFMKSNTLMKDG 363
            F++  M K+GWT G+GLG+   GI++ IK  +K D  G+ +   +      W  +F+ +AS++ +  D + + V +T        +K+ +  LS  N LY  F+KS TL+  G
Sbjct:   14 FAEQQMHKHGWTEGKGLGRRENGISEAIKVKVKCDHAGVGHNSAEQFTFHWWDHVFNKTASSISVEADQDGVKVNRTKDDDAPVTNKKPRKALSNRNMLYGRFVKSATLLPGG 126          
BLAST of G patch domain-containing protein 4 vs. Ensembl Mouse
Match: Gpatch4 (G patch domain containing 4 [Source:MGI Symbol;Acc:MGI:1913864])

HSP 1 Score: 65.4698 bits (158), Expect = 6.378e-12
Identity = 35/102 (34.31%), Postives = 60/102 (58.82%), Query Frame = 1
Query:   49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKE-EQLNLSGVNSLYRSFMKSNTL 351
            F++  + K+GWT G+GLG+   GITQ +K TLK D+HG+ +       +  WS +F+ +A++L + +      ++  SKE  Q +    + LY+ F+K+ TL
Sbjct:   14 FAEEQLLKHGWTQGKGLGRRENGITQALKVTLKQDNHGVGHDPAKEFTDHWWSDLFNKTAASLVVDSGKDGVQIRRLSKETTQRSHPKPSLLYQKFVKTATL 115          
BLAST of G patch domain-containing protein 4 vs. Ensembl Mouse
Match: Gpatch4 (G patch domain containing 4 [Source:MGI Symbol;Acc:MGI:1913864])

HSP 1 Score: 65.855 bits (159), Expect = 1.481e-11
Identity = 35/102 (34.31%), Postives = 60/102 (58.82%), Query Frame = 1
Query:   49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKE-EQLNLSGVNSLYRSFMKSNTL 351
            F++  + K+GWT G+GLG+   GITQ +K TLK D+HG+ +       +  WS +F+ +A++L + +      ++  SKE  Q +    + LY+ F+K+ TL
Sbjct:   14 FAEEQLLKHGWTQGKGLGRRENGITQALKVTLKQDNHGVGHDPAKEFTDHWWSDLFNKTAASLVVDSGKDGVQIRRLSKETTQRSHPKPSLLYQKFVKTATL 115          
BLAST of G patch domain-containing protein 4 vs. Ensembl Mouse
Match: Gpatch4 (G patch domain containing 4 [Source:MGI Symbol;Acc:MGI:1913864])

HSP 1 Score: 65.855 bits (159), Expect = 1.481e-11
Identity = 35/102 (34.31%), Postives = 60/102 (58.82%), Query Frame = 1
Query:   49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKE-EQLNLSGVNSLYRSFMKSNTL 351
            F++  + K+GWT G+GLG+   GITQ +K TLK D+HG+ +       +  WS +F+ +A++L + +      ++  SKE  Q +    + LY+ F+K+ TL
Sbjct:   14 FAEEQLLKHGWTQGKGLGRRENGITQALKVTLKQDNHGVGHDPAKEFTDHWWSDLFNKTAASLVVDSGKDGVQIRRLSKETTQRSHPKPSLLYQKFVKTATL 115          
BLAST of G patch domain-containing protein 4 vs. Ensembl Mouse
Match: Gpatch4 (G patch domain containing 4 [Source:MGI Symbol;Acc:MGI:1913864])

HSP 1 Score: 65.855 bits (159), Expect = 1.481e-11
Identity = 35/102 (34.31%), Postives = 60/102 (58.82%), Query Frame = 1
Query:   49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKE-EQLNLSGVNSLYRSFMKSNTL 351
            F++  + K+GWT G+GLG+   GITQ +K TLK D+HG+ +       +  WS +F+ +A++L + +      ++  SKE  Q +    + LY+ F+K+ TL
Sbjct:   14 FAEEQLLKHGWTQGKGLGRRENGITQALKVTLKQDNHGVGHDPAKEFTDHWWSDLFNKTAASLVVDSGKDGVQIRRLSKETTQRSHPKPSLLYQKFVKTATL 115          
BLAST of G patch domain-containing protein 4 vs. UniProt/SwissProt
Match: sp|Q566R3|GPTC4_RAT (G patch domain-containing protein 4 OS=Rattus norvegicus OX=10116 GN=Gpatch4 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.150e-12
Identity = 37/102 (36.27%), Postives = 61/102 (59.80%), Query Frame = 1
Query:   49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKE-EQLNLSGVNSLYRSFMKSNTL 351
            F++  + K+GWT G+GLG+   GITQ +K TLK D+HG+ +       +  WS +F+ +A+NL + +      ++  SKE  Q + S  + LY+ F+K+ TL
Sbjct:   14 FAEEQLLKHGWTQGKGLGRKENGITQALKVTLKQDTHGVGHDPAKEFTDHWWSDLFNKTAANLVVDSGKDGVQIRRLSKETTQRSHSKPSLLYQKFVKTATL 115          
BLAST of G patch domain-containing protein 4 vs. UniProt/SwissProt
Match: sp|Q5T3I0|GPTC4_HUMAN (G patch domain-containing protein 4 OS=Homo sapiens OX=9606 GN=GPATCH4 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.445e-11
Identity = 36/106 (33.96%), Postives = 59/106 (55.66%), Query Frame = 1
Query:   49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKE-EQLNLSGVNSLYRSFMKSNTLMKDG 363
            F++  + K+GWT G+GLG+   GITQ ++ TLK D+HG+ +          W+ +F+ +A+NL +        +++ SKE  + N    N LY+ F+K  TL   G
Sbjct:   14 FAEEQLLKHGWTQGKGLGRKENGITQALRVTLKQDTHGVGHDPAKEFTNHWWNELFNKTAANLVVETGQDGVQIRSLSKETTRYNHPKPNLLYQKFVKMATLTSGG 119          
BLAST of G patch domain-containing protein 4 vs. UniProt/SwissProt
Match: sp|Q2KJE1|GPTC4_BOVIN (G patch domain-containing protein 4 OS=Bos taurus OX=9913 GN=GPATCH4 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.809e-11
Identity = 32/106 (30.19%), Postives = 61/106 (57.55%), Query Frame = 1
Query:   49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQI-TNDNIITVVKTDSKEEQLNLSGVNSLYRSFMKSNTLMKDG 363
            F++  + K+GWT G+GLG+   GITQ ++ TLK D++G+ +          W+ +F+ +A+NL + T  + + + +   +  + + +  N LY+ F+K+ TL   G
Sbjct:   14 FAEEQLLKHGWTQGKGLGRKENGITQALRVTLKQDTYGVGHDPAKEFTNHWWNDLFNKTAANLVVETRQDGVQIRRLSKETTRQDHAKPNLLYQKFVKTATLTSSG 119          
BLAST of G patch domain-containing protein 4 vs. UniProt/SwissProt
Match: sp|Q3TFK5|GPTC4_MOUSE (G patch domain-containing protein 4 OS=Mus musculus OX=10090 GN=Gpatch4 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.036e-10
Identity = 35/102 (34.31%), Postives = 60/102 (58.82%), Query Frame = 1
Query:   49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKE-EQLNLSGVNSLYRSFMKSNTL 351
            F++  + K+GWT G+GLG+   GITQ +K TLK D+HG+ +       +  WS +F+ +A++L + +      ++  SKE  Q +    + LY+ F+K+ TL
Sbjct:   14 FAEEQLLKHGWTQGKGLGRRENGITQALKVTLKQDNHGVGHDPAKEFTDHWWSDLFNKTAASLVVDSGKDGVQIRRLSKETTQRSHPKPSLLYQKFVKTATL 115          
BLAST of G patch domain-containing protein 4 vs. UniProt/SwissProt
Match: sp|Q6P859|GPTC4_XENTR (G patch domain-containing protein 4 OS=Xenopus tropicalis OX=8364 GN=gpatch4 PE=2 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 5.195e-10
Identity = 36/113 (31.86%), Postives = 61/113 (53.98%), Query Frame = 1
Query:   49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITND-NIITVVKTD-------SKEEQLNLSGVNSLYRSFMKSNTLMKDG 363
            F++  M K+GWT G+GLG+   GI++ IK  +K D  G+ +   +      W  +F+ +AS++ +  D + + V +T        +K+ +  LS  N LY  F+KS TL+  G
Sbjct:   14 FAEQQMHKHGWTEGKGLGRRENGISEAIKVKVKCDHAGVGHNSAEQFTFHWWDHVFNKTASSISVEADQDGVKVNRTKDDDAPVTNKKPRKALSNRNMLYGRFVKSATLLPGG 126          
BLAST of G patch domain-containing protein 4 vs. TrEMBL
Match: E0W296 (G patch domain-containing protein, putative OS=Pediculus humanus subsp. corporis OX=121224 GN=8232663 PE=4 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 7.813e-13
Identity = 39/111 (35.14%), Postives = 65/111 (58.56%), Query Frame = 1
Query:   49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITND-NIITVVKTDSKEE---------QLNLSGVNSLYRSFMKSNTL 351
            F++  ++KYGW  G+GLGK   GI++PIK TLKFD  G+ + + D N ++ W  ++  +A +++I  D N I  VK   K+E         +  +S  N +Y+ F+K++ L
Sbjct:    3 FAKKELEKYGWKSGDGLGKNKTGISKPIKTTLKFDKSGIGHNQFDVN-DTWWQKVYDDAAKSIEIKKDSNEIVFVKKKKKDETNDDRQKKKKAKISDKNDVYKGFIKTSEL 112          
BLAST of G patch domain-containing protein 4 vs. TrEMBL
Match: A0A1B0DAS3 (G-patch domain-containing protein OS=Phlebotomus papatasi OX=29031 PE=4 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.789e-12
Identity = 45/121 (37.19%), Postives = 72/121 (59.50%), Query Frame = 1
Query:   49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESK---WSTMFSSSASNLQI-TNDNIITVVKTDSKEEQLNLSGV----------NSLYRSFMKSNTLMKDGLE 369
            F+QS+++KYGW+ G+GLGK N GI +P+KA LKFD+ GL +   D + E K   W   ++S+ASNL + T+ + + +   D +  +++ SG           +S Y +F+K  TL  +G E
Sbjct:    3 FAQSILQKYGWSEGQGLGKHNSGIAKPLKANLKFDTSGLGH---DGSAEFKNHWWENAYNSAASNLDVKTDGDSVKMELKDGESIKISTSGYTKPNQNDDTKSSRYGNFVKCATLTSEGQE 120          
BLAST of G patch domain-containing protein 4 vs. TrEMBL
Match: A0A087T732 (G patch domain-containing protein 4 (Fragment) OS=Stegodyphus mimosarum OX=407821 GN=X975_25998 PE=4 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.097e-12
Identity = 34/107 (31.78%), Postives = 61/107 (57.01%), Query Frame = 1
Query:   43 NAFSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKEEQ----LNLSGVNSLYRSFMKSNTL 351
            N F +  ++KYGWT G+GLGK   GIT+PIK+ LKFD+HG+ +      +   W   F+ ++S +Q+  +     + +D+ + +    L +S    ++  F+K+ T+
Sbjct:    2 NEFGRKQLEKYGWTKGKGLGKEENGITKPIKSKLKFDTHGIGHDSSKVWMSRWWCDAFNEASSRIQVIKNETGVSITSDNGQLKSTPLLTISSAAGMHGKFVKAETM 108          
BLAST of G patch domain-containing protein 4 vs. TrEMBL
Match: A0A0P6J915 (G patch domain-containing protein 4 isoform 1 OS=Heterocephalus glaber OX=10181 GN=GPATCH4 PE=4 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.277e-11
Identity = 36/102 (35.29%), Postives = 60/102 (58.82%), Query Frame = 1
Query:   49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQI-TNDNIITVVKTDSKEEQLNLSGVNSLYRSFMKSNTL 351
            F++  + K+GWT G+GLG+   GITQP+K TLK D+HG+ +          W+ +F+ +A+NL + T  + + + +   +  Q N    N LY+ F+K+ TL
Sbjct:   14 FAEEQLLKHGWTQGKGLGRKENGITQPLKVTLKQDTHGVGHDPAKEFTNHWWNELFNKTAANLVVETGQDGVQIRRLSKETTQHNHPKPNLLYQKFVKTATL 115          
BLAST of G patch domain-containing protein 4 vs. TrEMBL
Match: G1PDZ8 (G-patch domain containing 4 OS=Myotis lucifugus OX=59463 GN=GPATCH4 PE=4 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.307e-11
Identity = 35/106 (33.02%), Postives = 62/106 (58.49%), Query Frame = 1
Query:   49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQI-TNDNIITVVKTDSKEEQLNLSGVNSLYRSFMKSNTLMKDG 363
            F++  + K+GWTPG+GLG+   GITQ ++ TLK D+HG+ +          W+ +F+ +A++L + T  + + + +   +  + N    N LY+ F+K+ TL  DG
Sbjct:   14 FAEEQLLKHGWTPGKGLGRKENGITQALRVTLKQDTHGVGHDPAKEFTNHWWNELFNKTAASLVVETKQDGVQIRRLPKETTRHNHPKPNMLYQKFVKTATLTSDG 119          
BLAST of G patch domain-containing protein 4 vs. Ensembl Cavefish
Match: gpatch4 (G patch domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-041008-158])

HSP 1 Score: 55.0694 bits (131), Expect = 1.083e-8
Identity = 34/112 (30.36%), Postives = 58/112 (51.79%), Query Frame = 1
Query:   46 AFSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKEEQLNLSG---------VNSLYRSFMKSNTLM 354
            +F++  M ++GW   +GLGK   GI +PIK  +K D  G+ +K+ +      W  +F+ ++S L + +     VVK  + EE+  +S           + LY  F+KS TL+
Sbjct:    9 SFAEQQMLRHGWEQ-KGLGKEGNGICEPIKVKVKCDKGGVGHKQSEQFTFHWWDHVFNKASSGLDVESGQDGVVVKKKNGEEEGMISNKKPRKAMFKKSGLYGGFVKSATLL 119          
BLAST of G patch domain-containing protein 4 vs. Ensembl Sea Lamprey
Match: gpatch4 (G patch domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-041008-158])

HSP 1 Score: 49.6766 bits (117), Expect = 3.408e-7
Identity = 30/114 (26.32%), Postives = 60/114 (52.63%), Query Frame = 1
Query:   49 FSQSLMKKYGWT--PGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVV---KTDSKEEQL--------NLSGVNSLYRSFMKSNTL 351
            F+++ M K+GWT   G+GLG+   G  + +K  +K D+ G+ +   +      W  +F+ +A+++++        V   ++D  EE +        +LS  ++LY +F+K+ TL
Sbjct:   14 FAEAQMLKHGWTREAGKGLGRFENGRAEAVKVKVKHDTAGIGHDMAEQFTFHWWDHVFNKAAASIEVEGTEEGAKVMGNRSDGAEEPISNRKPRKAHLSTTHALYGNFVKAATL 127          
BLAST of G patch domain-containing protein 4 vs. Ensembl Sea Lamprey
Match: gpatch4 (G patch domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-041008-158])

HSP 1 Score: 49.6766 bits (117), Expect = 4.235e-7
Identity = 30/114 (26.32%), Postives = 60/114 (52.63%), Query Frame = 1
Query:   49 FSQSLMKKYGWT--PGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVV---KTDSKEEQL--------NLSGVNSLYRSFMKSNTL 351
            F+++ M K+GWT   G+GLG+   G  + +K  +K D+ G+ +   +      W  +F+ +A+++++        V   ++D  EE +        +LS  ++LY +F+K+ TL
Sbjct:   15 FAEAQMLKHGWTREAGKGLGRFENGRAEAVKVKVKHDTAGIGHDMAEQFTFHWWDHVFNKAAASIEVEGTEEGAKVMGNRSDGAEEPISNRKPRKAHLSTTHALYGNFVKAATL 128          
BLAST of G patch domain-containing protein 4 vs. Ensembl Medaka
Match: ENSORLT00000028847.1 (pep primary_assembly:ASM223467v1:16:28466007:28469016:-1 gene:ENSORLG00000016102.2 transcript:ENSORLT00000028847.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 54.299 bits (129), Expect = 9.376e-9
Identity = 24/85 (28.24%), Postives = 47/85 (55.29%), Query Frame = 1
Query:   46 AFSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKEEQLN 300
            AF++  + ++GW  G+GLG+   GI++PIK  +K    G+ ++E +      W  +F+ ++S+LQ+    + + +      E LN
Sbjct:   12 AFAEQQLLRHGWEHGKGLGRAENGISEPIKVKVKCGKGGVGHREGEQFSFHWWDHVFNKASSSLQVQAHQVGSTLSHHKTAETLN 96          
BLAST of G patch domain-containing protein 4 vs. Ensembl Medaka
Match: ENSORLT00000020150.2 (pep primary_assembly:ASM223467v1:16:28467303:28469016:-1 gene:ENSORLG00000016102.2 transcript:ENSORLT00000020150.2 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 50.447 bits (119), Expect = 8.810e-8
Identity = 21/71 (29.58%), Postives = 42/71 (59.15%), Query Frame = 1
Query:   46 AFSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNI 258
            AF++  + ++GW  G+GLG+   GI++PIK  +K    G+ ++E +      W  +F+ ++S+LQ+    +
Sbjct:   12 AFAEQQLLRHGWEHGKGLGRAENGISEPIKVKVKCGKGGVGHREGEQFSFHWWDHVFNKASSSLQVQAHQV 82          
BLAST of G patch domain-containing protein 4 vs. Planmine SMEST
Match: SMESG000035189.1 (SMESG000035189.1)

HSP 1 Score: 453.751 bits (1166), Expect = 1.412e-161
Identity = 297/300 (99.00%), Postives = 298/300 (99.33%), Query Frame = 1
Query:   37 MYNAFSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKEEQLNLSGVNSLYRSFMKSNTLMKDGLEIXXXXXXXXXXXXNESESVIKDESDVKRKKIQNSSLETSENVNMEVQESGDQXXXXXXXXXXXXXXXLVNNEVSKIICEVEPXXXXXXXXXXXXXXXXXXAINTETKIEQIEVAQXXXXXXFEAKTVEITDGXXXXXXXXXXXNNLSEKQILITQDSTSMTCHLSARSGITMSGKLARIKKLHEQELLR 936
            MYNAFSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKEEQLNLSGVNSLYRSFMKSNTLMKDGLEIKAKKLKRHKRKLNESESV KDESDVKRKKIQNSSLET+ENVNMEVQESGDQKVEKTKKKKRKDSKKLVNNEVSKIICEVEPKQEKRKKKSKNIISEISEAINTETKIEQIEVAQKPKKKKFEAKTVEITDGKIKDKKKKK KNNLSEKQILITQDSTSMTCHLSARSGITMSGKLARIKKLHEQELLR
Sbjct:    1 MYNAFSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKEEQLNLSGVNSLYRSFMKSNTLMKDGLEIKAKKLKRHKRKLNESESVSKDESDVKRKKIQNSSLETNENVNMEVQESGDQKVEKTKKKKRKDSKKLVNNEVSKIICEVEPKQEKRKKKSKNIISEISEAINTETKIEQIEVAQKPKKKKFEAKTVEITDGKIKDKKKKKSKNNLSEKQILITQDSTSMTCHLSARSGITMSGKLARIKKLHEQELLR 300          
BLAST of G patch domain-containing protein 4 vs. Planmine SMEST
Match: SMESG000035189.1 (SMESG000035189.1)

HSP 1 Score: 420.624 bits (1080), Expect = 1.100e-148
Identity = 279/300 (93.00%), Postives = 282/300 (94.00%), Query Frame = 1
Query:   37 MYNAFSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKEEQLNLSGVNSLYRSFMKSNTLMKDGLEIXXXXXXXXXXXXNESESVIKDESDVKRKKIQNSSLETSENVNMEVQESGDQXXXXXXXXXXXXXXXLVNNEVSKIICEVEPXXXXXXXXXXXXXXXXXXAINTETKIEQIEVAQXXXXXXFEAKTVEITDGXXXXXXXXXXXNNLSEKQILITQDSTSMTCHLSARSGITMSGKLARIKKLHEQELLR 936
            MYNAFSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKEEQLNLSGVNSLYRSFMKSNTLMKDGLEIKAKKLKRHKRKLNESESV KDESDVKRKKIQNSSLET+ENVNMEVQESGDQKVEKTKKKKR                ++EPKQEKRKKKSKNIISEISEAINTETKIEQIEVAQKPKKKKFEAKTVEITDGKIKDKKKKK KNNLSEKQILITQDSTSMTCHLSARSGITMSGKLARIKKLHEQELLR
Sbjct:    1 MYNAFSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKEEQLNLSGVNSLYRSFMKSNTLMKDGLEIKAKKLKRHKRKLNESESVSKDESDVKRKKIQNSSLETNENVNMEVQESGDQKVEKTKKKKR---------------KDIEPKQEKRKKKSKNIISEISEAINTETKIEQIEVAQKPKKKKFEAKTVEITDGKIKDKKKKKSKNNLSEKQILITQDSTSMTCHLSARSGITMSGKLARIKKLHEQELLR 285          
BLAST of G patch domain-containing protein 4 vs. Planmine SMEST
Match: SMESG000035189.1 (SMESG000035189.1)

HSP 1 Score: 400.979 bits (1029), Expect = 3.986e-141
Identity = 270/291 (92.78%), Postives = 273/291 (93.81%), Query Frame = 1
Query:   64 MKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKEEQLNLSGVNSLYRSFMKSNTLMKDGLEIXXXXXXXXXXXXNESESVIKDESDVKRKKIQNSSLETSENVNMEVQESGDQXXXXXXXXXXXXXXXLVNNEVSKIICEVEPXXXXXXXXXXXXXXXXXXAINTETKIEQIEVAQXXXXXXFEAKTVEITDGXXXXXXXXXXXNNLSEKQILITQDSTSMTCHLSARSGITMSGKLARIKKLHEQELLR 936
            MKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKEEQLNLSGVNSLYRSFMKSNTLMKDGLEIKAKKLKRHKRKLNESESV KDESDVKRKKIQNSSLET+ENVNMEVQESGDQKVEKTKKKKR                ++EPKQEKRKKKSKNIISEISEAINTETKIEQIEVAQKPKKKKFEAKTVEITDGKIKDKKKKK KNNLSEKQILITQDSTSMTCHLSARSGITMSGKLARIKKLHEQELLR
Sbjct:    1 MKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKEEQLNLSGVNSLYRSFMKSNTLMKDGLEIKAKKLKRHKRKLNESESVSKDESDVKRKKIQNSSLETNENVNMEVQESGDQKVEKTKKKKR---------------KDIEPKQEKRKKKSKNIISEISEAINTETKIEQIEVAQKPKKKKFEAKTVEITDGKIKDKKKKKSKNNLSEKQILITQDSTSMTCHLSARSGITMSGKLARIKKLHEQELLR 276          
The following BLAST results are available for this feature:
BLAST of G patch domain-containing protein 4 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
GPATCH42.270e-1233.96G-patch domain containing 4 [Source:HGNC Symbol;Ac... [more]
GPATCH42.493e-1233.33G-patch domain containing 4 [Source:HGNC Symbol;Ac... [more]
GPATCH43.002e-1233.96G-patch domain containing 4 [Source:HGNC Symbol;Ac... [more]
GPATCH45.374e-1232.35G-patch domain containing 4 [Source:HGNC Symbol;Ac... [more]
GPATCH48.082e-1033.78G-patch domain containing 4 [Source:HGNC Symbol;Ac... [more]
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BLAST of G patch domain-containing protein 4 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G patch domain-containing protein 4 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 1
Match NameE-valueIdentityDescription
CG155613.403e-1229.13gene:FBgn0039829 transcript:FBtr0085776[more]
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BLAST of G patch domain-containing protein 4 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
gpatch41.197e-727.93G patch domain containing 4 [Source:ZFIN;Acc:ZDB-G... [more]
gpatch41.545e-727.93G patch domain containing 4 [Source:ZFIN;Acc:ZDB-G... [more]
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BLAST of G patch domain-containing protein 4 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 1
Match NameE-valueIdentityDescription
hsp90aa1.19.364e-1131.86heat shock protein 90kDa alpha family class A memb... [more]
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BLAST of G patch domain-containing protein 4 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 4
Match NameE-valueIdentityDescription
Gpatch46.378e-1234.31G patch domain containing 4 [Source:MGI Symbol;Acc... [more]
Gpatch41.481e-1134.31G patch domain containing 4 [Source:MGI Symbol;Acc... [more]
Gpatch41.481e-1134.31G patch domain containing 4 [Source:MGI Symbol;Acc... [more]
Gpatch41.481e-1134.31G patch domain containing 4 [Source:MGI Symbol;Acc... [more]
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BLAST of G patch domain-containing protein 4 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q566R3|GPTC4_RAT4.150e-1236.27G patch domain-containing protein 4 OS=Rattus norv... [more]
sp|Q5T3I0|GPTC4_HUMAN1.445e-1133.96G patch domain-containing protein 4 OS=Homo sapien... [more]
sp|Q2KJE1|GPTC4_BOVIN4.809e-1130.19G patch domain-containing protein 4 OS=Bos taurus ... [more]
sp|Q3TFK5|GPTC4_MOUSE1.036e-1034.31G patch domain-containing protein 4 OS=Mus musculu... [more]
sp|Q6P859|GPTC4_XENTR5.195e-1031.86G patch domain-containing protein 4 OS=Xenopus tro... [more]
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BLAST of G patch domain-containing protein 4 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
E0W2967.813e-1335.14G patch domain-containing protein, putative OS=Ped... [more]
A0A1B0DAS32.789e-1237.19G-patch domain-containing protein OS=Phlebotomus p... [more]
A0A087T7325.097e-1231.78G patch domain-containing protein 4 (Fragment) OS=... [more]
A0A0P6J9152.277e-1135.29G patch domain-containing protein 4 isoform 1 OS=H... [more]
G1PDZ82.307e-1133.02G-patch domain containing 4 OS=Myotis lucifugus OX... [more]
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BLAST of G patch domain-containing protein 4 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
gpatch41.083e-830.36G patch domain containing 4 [Source:ZFIN;Acc:ZDB-G... [more]
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BLAST of G patch domain-containing protein 4 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 2
Match NameE-valueIdentityDescription
gpatch43.408e-726.32G patch domain containing 4 [Source:ZFIN;Acc:ZDB-G... [more]
gpatch44.235e-726.32G patch domain containing 4 [Source:ZFIN;Acc:ZDB-G... [more]
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BLAST of G patch domain-containing protein 4 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G patch domain-containing protein 4 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G patch domain-containing protein 4 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 2
Match NameE-valueIdentityDescription
ENSORLT00000028847.19.376e-928.24pep primary_assembly:ASM223467v1:16:28466007:28469... [more]
ENSORLT00000020150.28.810e-829.58pep primary_assembly:ASM223467v1:16:28467303:28469... [more]
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BLAST of G patch domain-containing protein 4 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3
Match NameE-valueIdentityDescription
SMESG000035189.11.412e-16199.00SMESG000035189.1[more]
SMESG000035189.11.100e-14893.00SMESG000035189.1[more]
SMESG000035189.13.986e-14192.78SMESG000035189.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30007674 ID=SMED30007674|Name=G patch domain-containing protein 4|organism=Schmidtea mediterranea sexual|type=transcript|length=996bp
TTTTAGTTTTTTTAGGTTTTTATTCAAATTTAATAAATGTATAATGCTTT
CTCTCAATCTCTTATGAAAAAGTATGGTTGGACTCCGGGAGAAGGACTTG
GAAAAACAAATCAGGGTATTACTCAACCTATTAAAGCAACATTAAAATTC
GACTCACATGGGCTATCTTACAAAGAGATTGATGCAAACCTTGAATCAAA
ATGGTCAACAATGTTTAGTTCCAGTGCTTCAAATTTACAAATTACTAATG
ATAATATTATAACTGTTGTGAAAACAGATTCTAAAGAAGAGCAATTAAAT
TTATCTGGAGTCAATAGTTTATATAGAAGTTTTATGAAGTCAAACACGTT
AATGAAAGATGGACTGGAAATTAAAGCAAAAAAGCTGAAAAGGCATAAAC
GAAAACTGAATGAAAGCGAATCCGTTATTAAAGACGAATCAGATGTTAAA
AGGAAAAAAATACAAAATTCATCACTTGAAACTAGTGAGAATGTTAATAT
GGAAGTACAGGAATCTGGTGATCAGAAAGTTGAAAAAACCAAAAAGAAAA
AAAGGAAAGACAGTAAAAAATTAGTTAATAATGAAGTTAGTAAAATAATT
TGTGAAGTCGAACCTAAACAGGAGAAAAGAAAAAAGAAATCAAAAAATAT
TATCAGTGAAATAAGTGAAGCTATTAATACAGAAACAAAAATTGAGCAAA
TCGAAGTAGCACAGAAACCAAAAAAGAAAAAATTTGAAGCTAAAACCGTC
GAAATTACTGATGGAAAAATAAAAGATAAGAAAAAAAAGAAAAAGAAAAA
CAATTTATCAGAGAAACAAATTCTAATCACCCAGGATTCGACATCAATGA
CGTGCCATTTGTCAGCTCGGTCTGGAATCACAATGTCTGGAAAATTAGCG
AGAATTAAGAAGCTCCACGAGCAAGAACTGCTCAGAAATATTTCTATAAA
ATCTGTTAATTGAAATATAATTTTATTTTCTTTTGTAAAAAAGATC
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protein sequence of SMED30007674-orf-1

>SMED30007674-orf-1 ID=SMED30007674-orf-1|Name=SMED30007674-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=309bp
MYNAFSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDA
NLESKWSTMFSSSASNLQITNDNIITVVKTDSKEEQLNLSGVNSLYRSFM
KSNTLMKDGLEIKAKKLKRHKRKLNESESVIKDESDVKRKKIQNSSLETS
ENVNMEVQESGDQKVEKTKKKKRKDSKKLVNNEVSKIICEVEPKQEKRKK
KSKNIISEISEAINTETKIEQIEVAQKPKKKKFEAKTVEITDGKIKDKKK
KKKKNNLSEKQILITQDSTSMTCHLSARSGITMSGKLARIKKLHEQELLR
NISIKSVN*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000026gut
PLANA:0000429neoblast
PLANA:0002032epidermal cell
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR000467G_patch_dom
Vocabulary: molecular function
TermDefinition
GO:0003676nucleic acid binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 107..127
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 123..145
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 116..178
NoneNo IPR availablePANTHERPTHR23149:SF8G PATCH DOMAIN-CONTAINING PROTEIN 4coord: 3..261
NoneNo IPR availablePANTHERPTHR23149G PATCH DOMAIN CONTAINING PROTEINcoord: 3..261
IPR000467G-patch domainSMARTSM00443G-patch_5coord: 1..46
e-value: 1.4E-10
score: 51.1
IPR000467G-patch domainPFAMPF01585G-patchcoord: 5..45
e-value: 2.9E-13
score: 49.5
IPR000467G-patch domainPROSITEPS50174G_PATCHcoord: 2..48
score: 13.844