G patch domain-containing protein 4
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30007674 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 9
Homology
BLAST of G patch domain-containing protein 4 vs. Ensembl Human
Match: GPATCH4 (G-patch domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25982]) HSP 1 Score: 68.5514 bits (166), Expect = 2.270e-12 Identity = 36/106 (33.96%), Postives = 59/106 (55.66%), Query Frame = 1 Query: 49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKE-EQLNLSGVNSLYRSFMKSNTLMKDG 363 F++ + K+GWT G+GLG+ GITQ ++ TLK D+HG+ + W+ +F+ +A+NL + +++ SKE + N N LY+ F+K TL G Sbjct: 14 FAEEQLLKHGWTQGKGLGRKENGITQALRVTLKQDTHGVGHDPAKEFTNHWWNELFNKTAANLVVETGQDGVQIRSLSKETTRYNHPKPNLLYQKFVKMATLTSGG 119
BLAST of G patch domain-containing protein 4 vs. Ensembl Human
Match: GPATCH4 (G-patch domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25982]) HSP 1 Score: 64.3142 bits (155), Expect = 2.493e-12 Identity = 33/99 (33.33%), Postives = 57/99 (57.58%), Query Frame = 1 Query: 49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKE-EQLNLSGVNSLYRSFMKS 342 F++ + K+GWT G+GLG+ GITQ ++ TLK D+HG+ + W+ +F+ +A+NL + +++ SKE + N N LY+ F+K+ Sbjct: 14 FAEEQLLKHGWTQGKGLGRKENGITQALRVTLKQDTHGVGHDPAKEFTNHWWNELFNKTAANLVVETGQDGVQIRSLSKETTRYNHPKPNLLYQKFVKT 112
BLAST of G patch domain-containing protein 4 vs. Ensembl Human
Match: GPATCH4 (G-patch domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25982]) HSP 1 Score: 68.5514 bits (166), Expect = 3.002e-12 Identity = 36/106 (33.96%), Postives = 59/106 (55.66%), Query Frame = 1 Query: 49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKE-EQLNLSGVNSLYRSFMKSNTLMKDG 363 F++ + K+GWT G+GLG+ GITQ ++ TLK D+HG+ + W+ +F+ +A+NL + +++ SKE + N N LY+ F+K TL G Sbjct: 19 FAEEQLLKHGWTQGKGLGRKENGITQALRVTLKQDTHGVGHDPAKEFTNHWWNELFNKTAANLVVETGQDGVQIRSLSKETTRYNHPKPNLLYQKFVKMATLTSGG 124
BLAST of G patch domain-containing protein 4 vs. Ensembl Human
Match: GPATCH4 (G-patch domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25982]) HSP 1 Score: 64.3142 bits (155), Expect = 5.374e-12 Identity = 33/102 (32.35%), Postives = 58/102 (56.86%), Query Frame = 1 Query: 49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKE-EQLNLSGVNSLYRSFMKSNTL 351 F++ + K+GWT G+GLG+ GITQ ++ TLK D+HG+ + W+ +F+ +A+NL + +++ SKE + N N LY+ F+K + + Sbjct: 14 FAEEQLLKHGWTQGKGLGRKENGITQALRVTLKQDTHGVGHDPAKEFTNHWWNELFNKTAANLVVETGQDGVQIRSLSKETTRYNHPKPNLLYQKFVKWDPV 115
BLAST of G patch domain-containing protein 4 vs. Ensembl Human
Match: GPATCH4 (G-patch domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25982]) HSP 1 Score: 60.077 bits (144), Expect = 8.082e-10 Identity = 25/74 (33.78%), Postives = 44/74 (59.46%), Query Frame = 1 Query: 49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVV 270 F++ + K+GWT G+GLG+ GITQ ++ TLK D+HG+ + W+ +F+ +A+NL + + T+ Sbjct: 14 FAEEQLLKHGWTQGKGLGRKENGITQALRVTLKQDTHGVGHDPAKEFTNHWWNELFNKTAANLVVETGQMATLT 87
BLAST of G patch domain-containing protein 4 vs. Ensembl Fly
Match: CG15561 (gene:FBgn0039829 transcript:FBtr0085776) HSP 1 Score: 67.0106 bits (162), Expect = 3.403e-12 Identity = 37/127 (29.13%), Postives = 63/127 (49.61%), Query Frame = 1 Query: 49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASN--LQITNDNIITVVKTDSKE-----------------EQLNLSGVNSLYRSFMKSNTLMKDGLEI 372 F++ ++ KYGW G+GLGK N GI P+KA LKFD+ GL + W F+ +ASN +QI D ++ + +E ++ + S + Y +F++++ L + G E+ Sbjct: 3 FAKKILGKYGWKEGDGLGKNNTGIAVPLKAALKFDNAGLGVDRAQEFNDHWWERCFNEAASNVDVQIQQDGQVSTSRRKGEEAVEISTRGFSARKLKKAKEQHASDGKATYDNFLQTSLLTQSGGEV 129
BLAST of G patch domain-containing protein 4 vs. Ensembl Zebrafish
Match: gpatch4 (G patch domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-041008-158]) HSP 1 Score: 52.373 bits (124), Expect = 1.197e-7 Identity = 31/111 (27.93%), Postives = 59/111 (53.15%), Query Frame = 1 Query: 49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQI-TNDNIITVVKTD--------SKEEQLNLSGVNSLYRSFMKSNTLM 354 F++ + ++GW G+GLG+ GI++ IK +K D G+ +K+ + W +F+ ++S L + + N + V K+D +K+ + + LY F+KS TL+ Sbjct: 14 FAEEQLLRHGWEKGKGLGRAENGISEAIKVKVKCDKGGMGHKQGEQFSFHWWDHVFNKASSGLVVESGQNGVMVKKSDDSSDGLISNKKPRKAQQAKSMLYGCFVKSATLL 124
BLAST of G patch domain-containing protein 4 vs. Ensembl Zebrafish
Match: gpatch4 (G patch domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-041008-158]) HSP 1 Score: 53.5286 bits (127), Expect = 1.545e-7 Identity = 31/111 (27.93%), Postives = 59/111 (53.15%), Query Frame = 1 Query: 49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQI-TNDNIITVVKTD--------SKEEQLNLSGVNSLYRSFMKSNTLM 354 F++ + ++GW G+GLG+ GI++ IK +K D G+ +K+ + W +F+ ++S L + + N + V K+D +K+ + + LY F+KS TL+ Sbjct: 14 FAEEQLLRHGWEKGKGLGRAENGISEAIKVKVKCDKGGMGHKQGEQFSFHWWDHVFNKASSGLVVESGQNGVMVKKSDDSSDGLISNKKPRKAQQAKSMLYGCFVKSATLL 124
BLAST of G patch domain-containing protein 4 vs. Ensembl Xenopus
Match: hsp90aa1.1 (heat shock protein 90kDa alpha family class A member 1 [Source:Xenbase;Acc:XB-GENE-495303]) HSP 1 Score: 63.5438 bits (153), Expect = 9.364e-11 Identity = 36/113 (31.86%), Postives = 61/113 (53.98%), Query Frame = 1 Query: 49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITND-NIITVVKTD-------SKEEQLNLSGVNSLYRSFMKSNTLMKDG 363 F++ M K+GWT G+GLG+ GI++ IK +K D G+ + + W +F+ +AS++ + D + + V +T +K+ + LS N LY F+KS TL+ G Sbjct: 14 FAEQQMHKHGWTEGKGLGRRENGISEAIKVKVKCDHAGVGHNSAEQFTFHWWDHVFNKTASSISVEADQDGVKVNRTKDDDAPVTNKKPRKALSNRNMLYGRFVKSATLLPGG 126
BLAST of G patch domain-containing protein 4 vs. Ensembl Mouse
Match: Gpatch4 (G patch domain containing 4 [Source:MGI Symbol;Acc:MGI:1913864]) HSP 1 Score: 65.4698 bits (158), Expect = 6.378e-12 Identity = 35/102 (34.31%), Postives = 60/102 (58.82%), Query Frame = 1 Query: 49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKE-EQLNLSGVNSLYRSFMKSNTL 351 F++ + K+GWT G+GLG+ GITQ +K TLK D+HG+ + + WS +F+ +A++L + + ++ SKE Q + + LY+ F+K+ TL Sbjct: 14 FAEEQLLKHGWTQGKGLGRRENGITQALKVTLKQDNHGVGHDPAKEFTDHWWSDLFNKTAASLVVDSGKDGVQIRRLSKETTQRSHPKPSLLYQKFVKTATL 115
BLAST of G patch domain-containing protein 4 vs. Ensembl Mouse
Match: Gpatch4 (G patch domain containing 4 [Source:MGI Symbol;Acc:MGI:1913864]) HSP 1 Score: 65.855 bits (159), Expect = 1.481e-11 Identity = 35/102 (34.31%), Postives = 60/102 (58.82%), Query Frame = 1 Query: 49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKE-EQLNLSGVNSLYRSFMKSNTL 351 F++ + K+GWT G+GLG+ GITQ +K TLK D+HG+ + + WS +F+ +A++L + + ++ SKE Q + + LY+ F+K+ TL Sbjct: 14 FAEEQLLKHGWTQGKGLGRRENGITQALKVTLKQDNHGVGHDPAKEFTDHWWSDLFNKTAASLVVDSGKDGVQIRRLSKETTQRSHPKPSLLYQKFVKTATL 115
BLAST of G patch domain-containing protein 4 vs. Ensembl Mouse
Match: Gpatch4 (G patch domain containing 4 [Source:MGI Symbol;Acc:MGI:1913864]) HSP 1 Score: 65.855 bits (159), Expect = 1.481e-11 Identity = 35/102 (34.31%), Postives = 60/102 (58.82%), Query Frame = 1 Query: 49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKE-EQLNLSGVNSLYRSFMKSNTL 351 F++ + K+GWT G+GLG+ GITQ +K TLK D+HG+ + + WS +F+ +A++L + + ++ SKE Q + + LY+ F+K+ TL Sbjct: 14 FAEEQLLKHGWTQGKGLGRRENGITQALKVTLKQDNHGVGHDPAKEFTDHWWSDLFNKTAASLVVDSGKDGVQIRRLSKETTQRSHPKPSLLYQKFVKTATL 115
BLAST of G patch domain-containing protein 4 vs. Ensembl Mouse
Match: Gpatch4 (G patch domain containing 4 [Source:MGI Symbol;Acc:MGI:1913864]) HSP 1 Score: 65.855 bits (159), Expect = 1.481e-11 Identity = 35/102 (34.31%), Postives = 60/102 (58.82%), Query Frame = 1 Query: 49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKE-EQLNLSGVNSLYRSFMKSNTL 351 F++ + K+GWT G+GLG+ GITQ +K TLK D+HG+ + + WS +F+ +A++L + + ++ SKE Q + + LY+ F+K+ TL Sbjct: 14 FAEEQLLKHGWTQGKGLGRRENGITQALKVTLKQDNHGVGHDPAKEFTDHWWSDLFNKTAASLVVDSGKDGVQIRRLSKETTQRSHPKPSLLYQKFVKTATL 115
BLAST of G patch domain-containing protein 4 vs. UniProt/SwissProt
Match: sp|Q566R3|GPTC4_RAT (G patch domain-containing protein 4 OS=Rattus norvegicus OX=10116 GN=Gpatch4 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 4.150e-12 Identity = 37/102 (36.27%), Postives = 61/102 (59.80%), Query Frame = 1 Query: 49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKE-EQLNLSGVNSLYRSFMKSNTL 351 F++ + K+GWT G+GLG+ GITQ +K TLK D+HG+ + + WS +F+ +A+NL + + ++ SKE Q + S + LY+ F+K+ TL Sbjct: 14 FAEEQLLKHGWTQGKGLGRKENGITQALKVTLKQDTHGVGHDPAKEFTDHWWSDLFNKTAANLVVDSGKDGVQIRRLSKETTQRSHSKPSLLYQKFVKTATL 115
BLAST of G patch domain-containing protein 4 vs. UniProt/SwissProt
Match: sp|Q5T3I0|GPTC4_HUMAN (G patch domain-containing protein 4 OS=Homo sapiens OX=9606 GN=GPATCH4 PE=1 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 1.445e-11 Identity = 36/106 (33.96%), Postives = 59/106 (55.66%), Query Frame = 1 Query: 49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKE-EQLNLSGVNSLYRSFMKSNTLMKDG 363 F++ + K+GWT G+GLG+ GITQ ++ TLK D+HG+ + W+ +F+ +A+NL + +++ SKE + N N LY+ F+K TL G Sbjct: 14 FAEEQLLKHGWTQGKGLGRKENGITQALRVTLKQDTHGVGHDPAKEFTNHWWNELFNKTAANLVVETGQDGVQIRSLSKETTRYNHPKPNLLYQKFVKMATLTSGG 119
BLAST of G patch domain-containing protein 4 vs. UniProt/SwissProt
Match: sp|Q2KJE1|GPTC4_BOVIN (G patch domain-containing protein 4 OS=Bos taurus OX=9913 GN=GPATCH4 PE=2 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 4.809e-11 Identity = 32/106 (30.19%), Postives = 61/106 (57.55%), Query Frame = 1 Query: 49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQI-TNDNIITVVKTDSKEEQLNLSGVNSLYRSFMKSNTLMKDG 363 F++ + K+GWT G+GLG+ GITQ ++ TLK D++G+ + W+ +F+ +A+NL + T + + + + + + + + N LY+ F+K+ TL G Sbjct: 14 FAEEQLLKHGWTQGKGLGRKENGITQALRVTLKQDTYGVGHDPAKEFTNHWWNDLFNKTAANLVVETRQDGVQIRRLSKETTRQDHAKPNLLYQKFVKTATLTSSG 119
BLAST of G patch domain-containing protein 4 vs. UniProt/SwissProt
Match: sp|Q3TFK5|GPTC4_MOUSE (G patch domain-containing protein 4 OS=Mus musculus OX=10090 GN=Gpatch4 PE=1 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 1.036e-10 Identity = 35/102 (34.31%), Postives = 60/102 (58.82%), Query Frame = 1 Query: 49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKE-EQLNLSGVNSLYRSFMKSNTL 351 F++ + K+GWT G+GLG+ GITQ +K TLK D+HG+ + + WS +F+ +A++L + + ++ SKE Q + + LY+ F+K+ TL Sbjct: 14 FAEEQLLKHGWTQGKGLGRRENGITQALKVTLKQDNHGVGHDPAKEFTDHWWSDLFNKTAASLVVDSGKDGVQIRRLSKETTQRSHPKPSLLYQKFVKTATL 115
BLAST of G patch domain-containing protein 4 vs. UniProt/SwissProt
Match: sp|Q6P859|GPTC4_XENTR (G patch domain-containing protein 4 OS=Xenopus tropicalis OX=8364 GN=gpatch4 PE=2 SV=1) HSP 1 Score: 63.5438 bits (153), Expect = 5.195e-10 Identity = 36/113 (31.86%), Postives = 61/113 (53.98%), Query Frame = 1 Query: 49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITND-NIITVVKTD-------SKEEQLNLSGVNSLYRSFMKSNTLMKDG 363 F++ M K+GWT G+GLG+ GI++ IK +K D G+ + + W +F+ +AS++ + D + + V +T +K+ + LS N LY F+KS TL+ G Sbjct: 14 FAEQQMHKHGWTEGKGLGRRENGISEAIKVKVKCDHAGVGHNSAEQFTFHWWDHVFNKTASSISVEADQDGVKVNRTKDDDAPVTNKKPRKALSNRNMLYGRFVKSATLLPGG 126
BLAST of G patch domain-containing protein 4 vs. TrEMBL
Match: E0W296 (G patch domain-containing protein, putative OS=Pediculus humanus subsp. corporis OX=121224 GN=8232663 PE=4 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 7.813e-13 Identity = 39/111 (35.14%), Postives = 65/111 (58.56%), Query Frame = 1 Query: 49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITND-NIITVVKTDSKEE---------QLNLSGVNSLYRSFMKSNTL 351 F++ ++KYGW G+GLGK GI++PIK TLKFD G+ + + D N ++ W ++ +A +++I D N I VK K+E + +S N +Y+ F+K++ L Sbjct: 3 FAKKELEKYGWKSGDGLGKNKTGISKPIKTTLKFDKSGIGHNQFDVN-DTWWQKVYDDAAKSIEIKKDSNEIVFVKKKKKDETNDDRQKKKKAKISDKNDVYKGFIKTSEL 112
BLAST of G patch domain-containing protein 4 vs. TrEMBL
Match: A0A1B0DAS3 (G-patch domain-containing protein OS=Phlebotomus papatasi OX=29031 PE=4 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 2.789e-12 Identity = 45/121 (37.19%), Postives = 72/121 (59.50%), Query Frame = 1 Query: 49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESK---WSTMFSSSASNLQI-TNDNIITVVKTDSKEEQLNLSGV----------NSLYRSFMKSNTLMKDGLE 369 F+QS+++KYGW+ G+GLGK N GI +P+KA LKFD+ GL + D + E K W ++S+ASNL + T+ + + + D + +++ SG +S Y +F+K TL +G E Sbjct: 3 FAQSILQKYGWSEGQGLGKHNSGIAKPLKANLKFDTSGLGH---DGSAEFKNHWWENAYNSAASNLDVKTDGDSVKMELKDGESIKISTSGYTKPNQNDDTKSSRYGNFVKCATLTSEGQE 120
BLAST of G patch domain-containing protein 4 vs. TrEMBL
Match: A0A087T732 (G patch domain-containing protein 4 (Fragment) OS=Stegodyphus mimosarum OX=407821 GN=X975_25998 PE=4 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 5.097e-12 Identity = 34/107 (31.78%), Postives = 61/107 (57.01%), Query Frame = 1 Query: 43 NAFSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKEEQ----LNLSGVNSLYRSFMKSNTL 351 N F + ++KYGWT G+GLGK GIT+PIK+ LKFD+HG+ + + W F+ ++S +Q+ + + +D+ + + L +S ++ F+K+ T+ Sbjct: 2 NEFGRKQLEKYGWTKGKGLGKEENGITKPIKSKLKFDTHGIGHDSSKVWMSRWWCDAFNEASSRIQVIKNETGVSITSDNGQLKSTPLLTISSAAGMHGKFVKAETM 108
BLAST of G patch domain-containing protein 4 vs. TrEMBL
Match: A0A0P6J915 (G patch domain-containing protein 4 isoform 1 OS=Heterocephalus glaber OX=10181 GN=GPATCH4 PE=4 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.277e-11 Identity = 36/102 (35.29%), Postives = 60/102 (58.82%), Query Frame = 1 Query: 49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQI-TNDNIITVVKTDSKEEQLNLSGVNSLYRSFMKSNTL 351 F++ + K+GWT G+GLG+ GITQP+K TLK D+HG+ + W+ +F+ +A+NL + T + + + + + Q N N LY+ F+K+ TL Sbjct: 14 FAEEQLLKHGWTQGKGLGRKENGITQPLKVTLKQDTHGVGHDPAKEFTNHWWNELFNKTAANLVVETGQDGVQIRRLSKETTQHNHPKPNLLYQKFVKTATL 115
BLAST of G patch domain-containing protein 4 vs. TrEMBL
Match: G1PDZ8 (G-patch domain containing 4 OS=Myotis lucifugus OX=59463 GN=GPATCH4 PE=4 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.307e-11 Identity = 35/106 (33.02%), Postives = 62/106 (58.49%), Query Frame = 1 Query: 49 FSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQI-TNDNIITVVKTDSKEEQLNLSGVNSLYRSFMKSNTLMKDG 363 F++ + K+GWTPG+GLG+ GITQ ++ TLK D+HG+ + W+ +F+ +A++L + T + + + + + + N N LY+ F+K+ TL DG Sbjct: 14 FAEEQLLKHGWTPGKGLGRKENGITQALRVTLKQDTHGVGHDPAKEFTNHWWNELFNKTAASLVVETKQDGVQIRRLPKETTRHNHPKPNMLYQKFVKTATLTSDG 119
BLAST of G patch domain-containing protein 4 vs. Ensembl Cavefish
Match: gpatch4 (G patch domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-041008-158]) HSP 1 Score: 55.0694 bits (131), Expect = 1.083e-8 Identity = 34/112 (30.36%), Postives = 58/112 (51.79%), Query Frame = 1 Query: 46 AFSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKEEQLNLSG---------VNSLYRSFMKSNTLM 354 +F++ M ++GW +GLGK GI +PIK +K D G+ +K+ + W +F+ ++S L + + VVK + EE+ +S + LY F+KS TL+ Sbjct: 9 SFAEQQMLRHGWEQ-KGLGKEGNGICEPIKVKVKCDKGGVGHKQSEQFTFHWWDHVFNKASSGLDVESGQDGVVVKKKNGEEEGMISNKKPRKAMFKKSGLYGGFVKSATLL 119
BLAST of G patch domain-containing protein 4 vs. Ensembl Sea Lamprey
Match: gpatch4 (G patch domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-041008-158]) HSP 1 Score: 49.6766 bits (117), Expect = 3.408e-7 Identity = 30/114 (26.32%), Postives = 60/114 (52.63%), Query Frame = 1 Query: 49 FSQSLMKKYGWT--PGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVV---KTDSKEEQL--------NLSGVNSLYRSFMKSNTL 351 F+++ M K+GWT G+GLG+ G + +K +K D+ G+ + + W +F+ +A+++++ V ++D EE + +LS ++LY +F+K+ TL Sbjct: 14 FAEAQMLKHGWTREAGKGLGRFENGRAEAVKVKVKHDTAGIGHDMAEQFTFHWWDHVFNKAAASIEVEGTEEGAKVMGNRSDGAEEPISNRKPRKAHLSTTHALYGNFVKAATL 127
BLAST of G patch domain-containing protein 4 vs. Ensembl Sea Lamprey
Match: gpatch4 (G patch domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-041008-158]) HSP 1 Score: 49.6766 bits (117), Expect = 4.235e-7 Identity = 30/114 (26.32%), Postives = 60/114 (52.63%), Query Frame = 1 Query: 49 FSQSLMKKYGWT--PGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVV---KTDSKEEQL--------NLSGVNSLYRSFMKSNTL 351 F+++ M K+GWT G+GLG+ G + +K +K D+ G+ + + W +F+ +A+++++ V ++D EE + +LS ++LY +F+K+ TL Sbjct: 15 FAEAQMLKHGWTREAGKGLGRFENGRAEAVKVKVKHDTAGIGHDMAEQFTFHWWDHVFNKAAASIEVEGTEEGAKVMGNRSDGAEEPISNRKPRKAHLSTTHALYGNFVKAATL 128
BLAST of G patch domain-containing protein 4 vs. Ensembl Medaka
Match: ENSORLT00000028847.1 (pep primary_assembly:ASM223467v1:16:28466007:28469016:-1 gene:ENSORLG00000016102.2 transcript:ENSORLT00000028847.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 54.299 bits (129), Expect = 9.376e-9 Identity = 24/85 (28.24%), Postives = 47/85 (55.29%), Query Frame = 1 Query: 46 AFSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKEEQLN 300 AF++ + ++GW G+GLG+ GI++PIK +K G+ ++E + W +F+ ++S+LQ+ + + + E LN Sbjct: 12 AFAEQQLLRHGWEHGKGLGRAENGISEPIKVKVKCGKGGVGHREGEQFSFHWWDHVFNKASSSLQVQAHQVGSTLSHHKTAETLN 96
BLAST of G patch domain-containing protein 4 vs. Ensembl Medaka
Match: ENSORLT00000020150.2 (pep primary_assembly:ASM223467v1:16:28467303:28469016:-1 gene:ENSORLG00000016102.2 transcript:ENSORLT00000020150.2 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 50.447 bits (119), Expect = 8.810e-8 Identity = 21/71 (29.58%), Postives = 42/71 (59.15%), Query Frame = 1 Query: 46 AFSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNI 258 AF++ + ++GW G+GLG+ GI++PIK +K G+ ++E + W +F+ ++S+LQ+ + Sbjct: 12 AFAEQQLLRHGWEHGKGLGRAENGISEPIKVKVKCGKGGVGHREGEQFSFHWWDHVFNKASSSLQVQAHQV 82
BLAST of G patch domain-containing protein 4 vs. Planmine SMEST
Match: SMESG000035189.1 (SMESG000035189.1) HSP 1 Score: 453.751 bits (1166), Expect = 1.412e-161 Identity = 297/300 (99.00%), Postives = 298/300 (99.33%), Query Frame = 1 Query: 37 MYNAFSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKEEQLNLSGVNSLYRSFMKSNTLMKDGLEIXXXXXXXXXXXXNESESVIKDESDVKRKKIQNSSLETSENVNMEVQESGDQXXXXXXXXXXXXXXXLVNNEVSKIICEVEPXXXXXXXXXXXXXXXXXXAINTETKIEQIEVAQXXXXXXFEAKTVEITDGXXXXXXXXXXXNNLSEKQILITQDSTSMTCHLSARSGITMSGKLARIKKLHEQELLR 936 MYNAFSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKEEQLNLSGVNSLYRSFMKSNTLMKDGLEIKAKKLKRHKRKLNESESV KDESDVKRKKIQNSSLET+ENVNMEVQESGDQKVEKTKKKKRKDSKKLVNNEVSKIICEVEPKQEKRKKKSKNIISEISEAINTETKIEQIEVAQKPKKKKFEAKTVEITDGKIKDKKKKK KNNLSEKQILITQDSTSMTCHLSARSGITMSGKLARIKKLHEQELLR Sbjct: 1 MYNAFSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKEEQLNLSGVNSLYRSFMKSNTLMKDGLEIKAKKLKRHKRKLNESESVSKDESDVKRKKIQNSSLETNENVNMEVQESGDQKVEKTKKKKRKDSKKLVNNEVSKIICEVEPKQEKRKKKSKNIISEISEAINTETKIEQIEVAQKPKKKKFEAKTVEITDGKIKDKKKKKSKNNLSEKQILITQDSTSMTCHLSARSGITMSGKLARIKKLHEQELLR 300
BLAST of G patch domain-containing protein 4 vs. Planmine SMEST
Match: SMESG000035189.1 (SMESG000035189.1) HSP 1 Score: 420.624 bits (1080), Expect = 1.100e-148 Identity = 279/300 (93.00%), Postives = 282/300 (94.00%), Query Frame = 1 Query: 37 MYNAFSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKEEQLNLSGVNSLYRSFMKSNTLMKDGLEIXXXXXXXXXXXXNESESVIKDESDVKRKKIQNSSLETSENVNMEVQESGDQXXXXXXXXXXXXXXXLVNNEVSKIICEVEPXXXXXXXXXXXXXXXXXXAINTETKIEQIEVAQXXXXXXFEAKTVEITDGXXXXXXXXXXXNNLSEKQILITQDSTSMTCHLSARSGITMSGKLARIKKLHEQELLR 936 MYNAFSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKEEQLNLSGVNSLYRSFMKSNTLMKDGLEIKAKKLKRHKRKLNESESV KDESDVKRKKIQNSSLET+ENVNMEVQESGDQKVEKTKKKKR ++EPKQEKRKKKSKNIISEISEAINTETKIEQIEVAQKPKKKKFEAKTVEITDGKIKDKKKKK KNNLSEKQILITQDSTSMTCHLSARSGITMSGKLARIKKLHEQELLR Sbjct: 1 MYNAFSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKEEQLNLSGVNSLYRSFMKSNTLMKDGLEIKAKKLKRHKRKLNESESVSKDESDVKRKKIQNSSLETNENVNMEVQESGDQKVEKTKKKKR---------------KDIEPKQEKRKKKSKNIISEISEAINTETKIEQIEVAQKPKKKKFEAKTVEITDGKIKDKKKKKSKNNLSEKQILITQDSTSMTCHLSARSGITMSGKLARIKKLHEQELLR 285
BLAST of G patch domain-containing protein 4 vs. Planmine SMEST
Match: SMESG000035189.1 (SMESG000035189.1) HSP 1 Score: 400.979 bits (1029), Expect = 3.986e-141 Identity = 270/291 (92.78%), Postives = 273/291 (93.81%), Query Frame = 1 Query: 64 MKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKEEQLNLSGVNSLYRSFMKSNTLMKDGLEIXXXXXXXXXXXXNESESVIKDESDVKRKKIQNSSLETSENVNMEVQESGDQXXXXXXXXXXXXXXXLVNNEVSKIICEVEPXXXXXXXXXXXXXXXXXXAINTETKIEQIEVAQXXXXXXFEAKTVEITDGXXXXXXXXXXXNNLSEKQILITQDSTSMTCHLSARSGITMSGKLARIKKLHEQELLR 936 MKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKEEQLNLSGVNSLYRSFMKSNTLMKDGLEIKAKKLKRHKRKLNESESV KDESDVKRKKIQNSSLET+ENVNMEVQESGDQKVEKTKKKKR ++EPKQEKRKKKSKNIISEISEAINTETKIEQIEVAQKPKKKKFEAKTVEITDGKIKDKKKKK KNNLSEKQILITQDSTSMTCHLSARSGITMSGKLARIKKLHEQELLR Sbjct: 1 MKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDANLESKWSTMFSSSASNLQITNDNIITVVKTDSKEEQLNLSGVNSLYRSFMKSNTLMKDGLEIKAKKLKRHKRKLNESESVSKDESDVKRKKIQNSSLETNENVNMEVQESGDQKVEKTKKKKR---------------KDIEPKQEKRKKKSKNIISEISEAINTETKIEQIEVAQKPKKKKFEAKTVEITDGKIKDKKKKKSKNNLSEKQILITQDSTSMTCHLSARSGITMSGKLARIKKLHEQELLR 276 The following BLAST results are available for this feature:
BLAST of G patch domain-containing protein 4 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of G patch domain-containing protein 4 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of G patch domain-containing protein 4 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 1
BLAST of G patch domain-containing protein 4 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 2
BLAST of G patch domain-containing protein 4 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 1
BLAST of G patch domain-containing protein 4 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 4
BLAST of G patch domain-containing protein 4 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of G patch domain-containing protein 4 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of G patch domain-containing protein 4 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of G patch domain-containing protein 4 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 2
BLAST of G patch domain-containing protein 4 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of G patch domain-containing protein 4 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of G patch domain-containing protein 4 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 2
BLAST of G patch domain-containing protein 4 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 3
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30007674 ID=SMED30007674|Name=G patch domain-containing protein 4|organism=Schmidtea mediterranea sexual|type=transcript|length=996bpback to top protein sequence of SMED30007674-orf-1 >SMED30007674-orf-1 ID=SMED30007674-orf-1|Name=SMED30007674-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=309bp MYNAFSQSLMKKYGWTPGEGLGKTNQGITQPIKATLKFDSHGLSYKEIDAback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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