SMED30007588

Overview
NameSMED30007588
Smed IDSMED30007588
Length (bp)1418
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30007588 (SMED30007588) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30007588 (SMED30007588) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30007588 (SMED30007588) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30007588 (SMED30007588) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30007588

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 9

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30007588SMESG000034112.1 SmedASXL_012649SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
pharynxSMED30007588SMESG000034112.1 dd_Smed_v4_10100_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30007588SMESG000034112.1 dd_Smed_v4_10100_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30007588SMESG000034112.1 dd_Smed_v4_10100_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30007588SMESG000034112.1 dd_Smed_v4_10100_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neuronSMED30007588SMESG000034112.1 dd_Smed_v4_10100_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		whole organism asexual adult colorimetric in situ hybridization evidence
parenchymaSMED30007588SMESG000034112.1 dd_Smed_v4_10100_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30007588SMESG000034112.1 dd_Smed_v6_10100_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
epidermisSMED30007588SMESG000034112.1 dd_Smed_v4_10100_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30007588 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.005361:61796..74498 +6823
Homology
[Close]
BLAST of SMED30007588 vs. Ensembl Zebrafish
Match: spice1 (spindle and centriole associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-041212-64])

HSP 1 Score: 58.151 bits (139), Expect = 1.716e-8
Identity = 39/120 (32.50%), Postives = 66/120 (55.00%), Query Frame = 3 
Query:  171 WNDTVSDLNAYKLTPEECLQRKIDHISKNQQIHFHTSQDTPKNGETVYDRLTKVRYGNQ-IKDSEVNQ-RRKIIKGMFTTDRELFDLFEQSEKSLSAVESMFGDPLKRYKVNPSVTPAPN 524
            W  TV+DL+ +K TPEE  +R   H S+N+ +            E     LT+ R  NQ +    +++ RR II+ +F+   +L D+  +S+++L+ V+ +FGD  +R    PS+T AP+
Sbjct:   30 WVSTVNDLSVHKATPEELARRHEMHRSQNRVV---------AQWELKEKTLTRRRRKNQPLSPPGLDRARRDIIREVFSDHCQLQDVIARSDRALAVVKDLFGDAPRRRTGFPSITVAPD 140
[Close]
BLAST of SMED30007588 vs. Ensembl Xenopus
Match: elmod2 (ELMO/CED-12 domain containing 2 [Source:Xenbase;Acc:XB-GENE-998865])

HSP 1 Score: 51.6026 bits (122), Expect = 2.494e-6
Identity = 37/123 (30.08%), Postives = 61/123 (49.59%), Query Frame = 3 
Query:  171 WNDTVSDLNAYKLTPEECLQRKIDHISKNQQIHFHTSQDTPKNGET-----VYDRLTKVRYGNQIKDSEVNQRRKIIKGMFTTDRELFDLFEQSEKSLSAVESMFGDPLKRYKVNPSVTPAPN 524
            W+ TVSDL   + T EE   R+  H SKNQ +     Q+   N ++      Y  L +            N R  ++K + +    + D+ E+S+++L+ V+ +FGD  +R+   PSVT AP+
Sbjct:   56 WDSTVSDLTVLRATNEELEHRREIHRSKNQWLARWELQNKATNKKSEKENGGYSALLE------------NSRLALMKEILSDQYLMNDVLERSDRALAVVKDLFGDAPRRHTGFPSVTMAPS 166
[Close]
BLAST of SMED30007588 vs. Ensembl Xenopus
Match: elmod2 (ELMO/CED-12 domain containing 2 [Source:Xenbase;Acc:XB-GENE-998865])

HSP 1 Score: 51.2174 bits (121), Expect = 3.217e-6
Identity = 37/123 (30.08%), Postives = 61/123 (49.59%), Query Frame = 3 
Query:  171 WNDTVSDLNAYKLTPEECLQRKIDHISKNQQIHFHTSQDTPKNGET-----VYDRLTKVRYGNQIKDSEVNQRRKIIKGMFTTDRELFDLFEQSEKSLSAVESMFGDPLKRYKVNPSVTPAPN 524
            W+ TVSDL   + T EE   R+  H SKNQ +     Q+   N ++      Y  L +            N R  ++K + +    + D+ E+S+++L+ V+ +FGD  +R+   PSVT AP+
Sbjct:   32 WDSTVSDLTVLRATNEELEHRREIHRSKNQWLARWELQNKATNKKSEKENGGYSALLE------------NSRLALMKEILSDQYLMNDVLERSDRALAVVKDLFGDAPRRHTGFPSVTMAPS 142
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BLAST of SMED30007588 vs. UniProt/SwissProt
Match: sp|Q6DF94|SPICE_XENLA (Spindle and centriole-associated protein 1 OS=Xenopus laevis OX=8355 GN=spice1 PE=2 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 3.650e-6
Identity = 36/136 (26.47%), Postives = 69/136 (50.74%), Query Frame = 3 
Query:  126 KSSYKSVRKIKDKPAWNDTVSDLNAYKLTPEECLQRKIDHISKNQQIHFHTSQDTPKNGETVYDRLTKVRYGNQIKDSEV---NQRRKIIKGMFTTDRELFDLFEQSEKSLSAVESMFGDPLKRYKVNPSVTPAPN 524
            K   K+ +K++ +  W+ +V+DL  ++ T EE   R+  H SKNQ +               ++   K  Y    K++     N R  ++K + +    + D+ E+S+++L+ V+ +FGD  +R+   P+VT AP+
Sbjct:   17 KKPSKTRKKLQARKEWDSSVNDLTVFRATNEELEHRREIHRSKNQWL-------------ARWELQNKANYKQSEKENSTQFENSRLALMKEILSDQYLMNDVLERSDRALAVVKDLFGDAPRRHTGFPNVTMAPS 139
[Close]
BLAST of SMED30007588 vs. TrEMBL
Match: V9KEX3 (Spindle and centriole-associated protein 1 OS=Callorhinchus milii OX=7868 PE=2 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 2.483e-7
Identity = 40/125 (32.00%), Postives = 68/125 (54.40%), Query Frame = 3 
Query:  147 RKIKDKPAWNDTVSDLNAYKLTPEECLQRKIDHISKNQQIHFHTSQDTPKNGETVYDRLTKVRYGNQIKDSEVNQRRKIIKGMFTTDRELFDLFEQSEKSLSAVESMFGDPLKRYKVNPSVTPAP 521
            RK  DK  W+ TVSDL+ ++ TPEE  +R   H+SKN+ +      +  K       R    ++G ++ DS   Q+  I++ +     +L D+ E+S+++++ V  +FGD  +R    P+VT AP
Sbjct:   25 RKTLDK-EWDSTVSDLSVHRATPEELAKRHEKHLSKNRAL---AQWELGKRAIASKQR----KHGQKMADSLDRQKYAIMREILFDQYQLQDVLERSDQAMAVVRDLFGDAPRRQAGFPNVTMAP 141
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BLAST of SMED30007588 vs. TrEMBL
Match: A0A4W3IGP2 (Uncharacterized protein OS=Callorhinchus milii OX=7868 PE=4 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 3.457e-7
Identity = 40/125 (32.00%), Postives = 68/125 (54.40%), Query Frame = 3 
Query:  147 RKIKDKPAWNDTVSDLNAYKLTPEECLQRKIDHISKNQQIHFHTSQDTPKNGETVYDRLTKVRYGNQIKDSEVNQRRKIIKGMFTTDRELFDLFEQSEKSLSAVESMFGDPLKRYKVNPSVTPAP 521
            RK  DK  W+ TVSDL+ ++ TPEE  +R   H+SKN+ +      +  K       R    ++G ++ DS   Q+  I++ +     +L D+ E+S+++++ V  +FGD  +R    P+VT AP
Sbjct:   25 RKTLDK-EWDSTVSDLSVHRATPEELAKRHEKHLSKNRAL---AQWELGKRAIASKQR----KHGQKMADSLDRQKYAIMREILFDQYQLQDVLERSDQAMAVVRDLFGDAPRRQAGFPNVTMAP 141
[Close]
BLAST of SMED30007588 vs. TrEMBL
Match: A0A151MD58 (Spindle and centriole-associated protein 1 isoform A OS=Alligator mississippiensis OX=8496 GN=SPICE1 PE=4 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 6.259e-7
Identity = 37/119 (31.09%), Postives = 67/119 (56.30%), Query Frame = 3 
Query:  171 WNDTVSDLNAYKLTPEECLQRKIDHISKNQ-QIHFHTSQDTPKNGETVYDRLTKVRYGNQIKDSEVNQRRKIIKGMFTTDRELFDLFEQSEKSLSAVESMFGDPLKRYKVNPSVTPAPN 524
            W+ TV DL  ++ TPE+ L+R   H SKN+  +H    +  PK       ++ K R G    DS   ++  +++ + +   +L D+ EQS+++++ V+ +FGD  +R+   P+VT AP+
Sbjct:   30 WDSTVHDLTVHQATPEDILRRHEIHKSKNKVLVHLELQEKAPKR------KIKKQRQG--APDSLEKRKLALMREILSDQYQLQDVLEQSDQAMAVVKDLFGDAPRRHTGFPNVTMAPD 140
[Close]
BLAST of SMED30007588 vs. TrEMBL
Match: A0A151MD65 (Spindle and centriole-associated protein 1 isoform B OS=Alligator mississippiensis OX=8496 GN=SPICE1 PE=4 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 6.655e-7
Identity = 37/119 (31.09%), Postives = 67/119 (56.30%), Query Frame = 3 
Query:  171 WNDTVSDLNAYKLTPEECLQRKIDHISKNQ-QIHFHTSQDTPKNGETVYDRLTKVRYGNQIKDSEVNQRRKIIKGMFTTDRELFDLFEQSEKSLSAVESMFGDPLKRYKVNPSVTPAPN 524
            W+ TV DL  ++ TPE+ L+R   H SKN+  +H    +  PK       ++ K R G    DS   ++  +++ + +   +L D+ EQS+++++ V+ +FGD  +R+   P+VT AP+
Sbjct:   30 WDSTVHDLTVHQATPEDILRRHEIHKSKNKVLVHLELQEKAPKR------KIKKQRQG--APDSLEKRKLALMREILSDQYQLQDVLEQSDQAMAVVKDLFGDAPRRHTGFPNVTMAPD 140
[Close]
BLAST of SMED30007588 vs. TrEMBL
Match: A0A3S0ZSA3 (Uncharacterized protein OS=Elysia chlorotica OX=188477 GN=EGW08_006625 PE=4 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 8.838e-7
Identity = 40/123 (32.52%), Postives = 64/123 (52.03%), Query Frame = 3 
Query:  153 IKDKPAWNDTVSDLNAYKLTPEECLQRKIDHISKNQQIHFHTSQDTPKNGETVYDRLTKVRYGNQIKDSEVNQRRKIIKGMFTTDRELFDLFEQSEKSLSAVESMFGDPLKRYKVNPSVTPAP 521
            +  +P W+D+V+DL  ++ TPEE   RK  H SKN     H S           ++L K R  N++  +E  Q+  I+K +     EL  +  +S+  ++ V+ +FGD  KR+   P+VT AP
Sbjct:   16 VPKRPGWDDSVNDLTVFRATPEEVFLRKEAHKSKN-----HIS--------VKLEKLRKERQRNKLSGAEA-QQLAIMKEVLYDQHELQKVLAKSDTMMAVVKDLFGDDPKRFMGFPNVTSAP 124
[Close]
BLAST of SMED30007588 vs. Ensembl Nematostella
Match: EDO48168 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RJY6])

HSP 1 Score: 52.373 bits (124), Expect = 3.102e-7
Identity = 40/130 (30.77%), Postives = 60/130 (46.15%), Query Frame = 3 
Query:  165 PAWNDTVSDLNAYKLTPEECLQRKIDHISKNQQIHFHTSQDTPKNGETVYDRLTKVRYGNQIKDSEVNQRRKIIKGMFTTDRELF-DLFEQSEKSLSAVESMFGDPLKRYKVNPSVTPAPNFTTVNVKEN 551
            P W+ TV+DLN YK + +E  QR   H SKN        Q T K     Y           I      QR++ I       R+ F D+  +S++++S V+ +FGD  K+Y   P++T  P   + N + N
Sbjct:   41 PEWDSTVNDLNVYKASEDEVRQRHEAHKSKN--YGLPRKQATNKENSPGY-----------ITTPNSAQRKQAILQEILYGRDQFQDVLAESDRTMSVVKDLFGDDPKKYMGFPNITVPPQVLSENTERN 157
[Close]
BLAST of SMED30007588 vs. Planmine SMEST
Match: SMESG000034112.1 (SMESG000034112.1)

HSP 1 Score: 662.144 bits (1707), Expect = 0.000e+0
Identity = 348/350 (99.43%), Postives = 349/350 (99.71%), Query Frame = 3 
Query:  111 MNDTKKSSYKSVRKIKDKPAWNDTVSDLNAYKLTPEECLQRKIDHISKNQQIHFHTSQDTPKNGETVYDRLTKVRYGNQIKDSEVNQRRKIIKGMFTTDRELFDLFEQSEKSLSAVESMFGDPLKRYKVNPSVTPAPNFTTVNVKENTNNSNAGALNXXXXXXXXXXXXXXXXXXXXXNNDDLSRFRNFIENERKAEEVLENRKIKVVNERNSVKMQDSSTETAEIGESNNVLQYVCSRLLDSPCPDHLISNCNKDYSDKIINYIINVNRKQAIQIEQLNSDILRNKELIDALTLELINNNEKVKVMKNGYETFTKKVTTEISEMKSLIIKYLDQKIPSDSKPIPNYIYN 1160
            MNDTKKSSYKSVRKIKDKPAWNDTVSDLNAYKLTPEECLQRKIDHISKNQQIHFHTSQDTPKN ETVYDRLTKVRYGNQIKDSEVNQRRKIIKGMFTTDRELFDLFEQSEKSLSAVESMFGDPLKRYKVNPSVTPAPNFTTVNVKENTNNSNAGALNEFSDSELESSKSELKSTSNHSNNDDLSRFRNFIENERKAEEVLENRKIKVVNERNSVKM+DSSTETAEIGESNNVLQYVCSRLLDSPCPDHLISNCNKDYSDKIINYIINVNRKQAIQIEQLNSDILRNKELIDALTLELINNNEKVKVMKNGYETFTKKVTTEISEMKSLIIKYLDQKIPSDSKPIPNYIYN
Sbjct:    1 MNDTKKSSYKSVRKIKDKPAWNDTVSDLNAYKLTPEECLQRKIDHISKNQQIHFHTSQDTPKNDETVYDRLTKVRYGNQIKDSEVNQRRKIIKGMFTTDRELFDLFEQSEKSLSAVESMFGDPLKRYKVNPSVTPAPNFTTVNVKENTNNSNAGALNEFSDSELESSKSELKSTSNHSNNDDLSRFRNFIENERKAEEVLENRKIKVVNERNSVKMEDSSTETAEIGESNNVLQYVCSRLLDSPCPDHLISNCNKDYSDKIINYIINVNRKQAIQIEQLNSDILRNKELIDALTLELINNNEKVKVMKNGYETFTKKVTTEISEMKSLIIKYLDQKIPSDSKPIPNYIYN 350
The following BLAST results are available for this feature:
BLAST of SMED30007588 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007588 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007588 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007588 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
spice11.716e-832.50spindle and centriole associated protein 1 [Source... [more]
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BLAST of SMED30007588 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 2
Match NameE-valueIdentityDescription
elmod22.494e-630.08ELMO/CED-12 domain containing 2 [Source:Xenbase;Ac... [more]
elmod23.217e-630.08ELMO/CED-12 domain containing 2 [Source:Xenbase;Ac... [more]
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BLAST of SMED30007588 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007588 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 1
Match NameE-valueIdentityDescription
sp|Q6DF94|SPICE_XENLA3.650e-626.47Spindle and centriole-associated protein 1 OS=Xeno... [more]
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BLAST of SMED30007588 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
V9KEX32.483e-732.00Spindle and centriole-associated protein 1 OS=Call... [more]
A0A4W3IGP23.457e-732.00Uncharacterized protein OS=Callorhinchus milii OX=... [more]
A0A151MD586.259e-731.09Spindle and centriole-associated protein 1 isoform... [more]
A0A151MD656.655e-731.09Spindle and centriole-associated protein 1 isoform... [more]
A0A3S0ZSA38.838e-732.52Uncharacterized protein OS=Elysia chlorotica OX=18... [more]
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BLAST of SMED30007588 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007588 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007588 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007588 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO481683.102e-730.77Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of SMED30007588 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007588 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000034112.10.000e+099.43SMESG000034112.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30007588 ID=SMED30007588|Name=SMED30007588|organism=Schmidtea mediterranea sexual|type=transcript|length=1418bp
TTTAAAATTGCGTCTTTAGTTACTAAATTACTTTTTTATTGAAACTTATT
ATTTTGATTATTTTTCACGATATTTTTGTGAATTTGAATATTGAATTTTA
TTAATAGTAAATGAACGATACAAAAAAGTCATCATATAAATCTGTTCGAA
AAATTAAAGATAAGCCAGCATGGAATGATACGGTTTCAGATCTAAACGCT
TATAAGTTGACTCCTGAAGAATGCCTCCAAAGAAAAATTGATCATATTTC
TAAGAATCAACAAATTCATTTCCACACATCTCAAGACACACCAAAAAACG
GTGAAACTGTTTATGACAGATTAACAAAAGTCCGATATGGGAATCAAATC
AAAGATAGTGAAGTTAACCAACGTAGAAAAATTATAAAGGGAATGTTTAC
TACAGACAGGGAATTATTTGACTTATTTGAGCAATCAGAGAAATCTCTGT
CAGCCGTCGAAAGTATGTTCGGTGATCCACTTAAGAGATATAAAGTCAAT
CCAAGTGTCACTCCGGCTCCAAATTTTACCACAGTCAATGTGAAAGAAAA
TACAAACAATTCAAATGCGGGTGCTCTAAATGAATTTTCTGATTCTGAAT
TGGAATCCTCTAAATCTGAGCTAAAATCCACCAGTAATCATTCAAACAAC
GATGATTTATCCAGGTTTAGAAATTTTATTGAAAATGAAAGGAAAGCTGA
GGAAGTATTAGAAAATCGGAAAATTAAAGTTGTGAATGAAAGAAATTCAG
TAAAAATGCAGGATTCCAGTACTGAAACCGCGGAAATTGGCGAGTCTAAC
AATGTCCTTCAATACGTCTGTTCAAGATTATTAGATTCACCTTGCCCAGA
TCATCTTATCTCCAACTGCAATAAAGATTATTCTGATAAGATTATCAACT
ACATTATTAACGTCAATCGCAAGCAAGCTATCCAAATAGAGCAACTTAAC
TCGGATATTTTAAGGAATAAAGAGCTAATAGATGCATTAACATTGGAATT
GATCAATAATAATGAAAAGGTTAAAGTGATGAAGAATGGGTATGAAACCT
TTACTAAAAAGGTAACAACAGAAATATCAGAAATGAAGAGCCTTATCATA
AAATATCTCGATCAAAAAATACCTTCTGATTCAAAACCAATTCCAAATTA
TATTTACAACCCTTCGTCGCGTTCTATAACTCCACGATCAAAAGAAATAT
CTACTTTTGACAATGAATCAAATTGTTTTAACAATCAAGAAGTATTACAT
GAACAATTGAATTCTCTTCAAATCGAACATTTGAAAACGGAGAAACGATT
GAAAAGTTTGTTAAAAATTCAAGATTCAATATCCCAAGTTTCATCAAACT
GAAAATACTCAAAACGGTGCAACAATCTCAATGGAACATTTGGCCTATGT
GTGATTTGTATAGCGGGG
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protein sequence of SMED30007588-orf-1

>SMED30007588-orf-1 ID=SMED30007588-orf-1|Name=SMED30007588-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=414bp
MNDTKKSSYKSVRKIKDKPAWNDTVSDLNAYKLTPEECLQRKIDHISKNQ
QIHFHTSQDTPKNGETVYDRLTKVRYGNQIKDSEVNQRRKIIKGMFTTDR
ELFDLFEQSEKSLSAVESMFGDPLKRYKVNPSVTPAPNFTTVNVKENTNN
SNAGALNEFSDSELESSKSELKSTSNHSNNDDLSRFRNFIENERKAEEVL
ENRKIKVVNERNSVKMQDSSTETAEIGESNNVLQYVCSRLLDSPCPDHLI
SNCNKDYSDKIINYIINVNRKQAIQIEQLNSDILRNKELIDALTLELINN
NEKVKVMKNGYETFTKKVTTEISEMKSLIIKYLDQKIPSDSKPIPNYIYN
PSSRSITPRSKEISTFDNESNCFNNQEVLHEQLNSLQIEHLKTEKRLKSL
LKIQDSISQVSSN*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000034epidermis
PLANA:0000099neuron
PLANA:0000418head
Vocabulary: INTERPRO
TermDefinition
IPR031387SPICE1
Vocabulary: biological process
TermDefinition
GO:0090307mitotic spindle assembly