SMED30007579

Overview
NameSMED30007579
Smed IDSMED30007579
Length (bp)2335
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30007579 (SMED30007579) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30007579 (SMED30007579) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30007579 (SMED30007579) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30007579 (SMED30007579) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30007579

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 8

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
pharynxSMED30007579SMESG000038305.1 SMESG000038298.1 SMESG000038313.1 SMESG000035859.1 dd_Smed_v4_9798_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
protonephridiaSMED30007579SMESG000038305.1 SMESG000038298.1 SMESG000038313.1 SMESG000035859.1 dd_Smed_v4_9798_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30007579SMESG000038305.1 SMESG000038298.1 SMESG000038313.1 SMESG000035859.1 dd_Smed_v4_9798_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30007579SMESG000038305.1 SMESG000038298.1 SMESG000038313.1 SMESG000035859.1 dd_Smed_v4_9798_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30007579SMESG000038305.1 SMESG000038298.1 SMESG000038313.1 SMESG000035859.1 dd_Smed_v4_9798_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30007579SMESG000038298.1 Contig23452newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
head regionSMED30007579SMESG000038305.1 SMESG000038298.1 SMESG000038313.1 SMESG000035859.1 dd_Smed_v6_9798_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
epidermisSMED30007579SMESG000038305.1 SMESG000038298.1 SMESG000038313.1 SMESG000035859.1 dd_Smed_v4_9798_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of SMED30007579 vs. Ensembl Xenopus
Match: fdxacb1 (ferredoxin-fold anticodon binding domain containing 1 [Source:Xenbase;Acc:XB-GENE-950096])

HSP 1 Score: 65.0846 bits (157), Expect = 3.575e-10
Identity = 148/575 (25.74%), Postives = 263/575 (45.74%), Query Frame = 3 
Query:  102 ILKVFNQQQSKFSSENLSDLKGMISCLQELENERFIAHSVWETESIKYEALRNKLVHYPXXXXXXXXXXXXXXXXMNEKTIKNL----TETLEKINSNIDKHSTDLDRFNLDNEKLIPEFEQMKVKHEEIVVLLNQHLSKKADKQIELNEIRNTIRDFNENIVQLEEDVFNLKETMIKDRAVAREEKKRILSETNKTQNLLDVQNTKNSELNKIYQNLKHEATETSLAVNDKMTIYQKYIKNIG---EIVKRQ---GQLEESIENMTWSNSQIKQKIDETDKKILESTFDFKEWQAQANEEIKMLSES---VKMQQQILSELHFVXXXXXXXXXXXXXXXXXVSMHLRSLLDKLKEIDENSAA---KVSDVGQLVYEMEEMEKNIITSKENHEATVSAIKAHVSSLKKQLEKERKQRTVVQQDNSKLQDQINLFRGEHMKFMRDVNSKINDSK-------SEHSRLISLYQQLKKKIKEESDQSEKLKILISENKENLTREDTELTNSISLLNRQIF-EMEKDGSEKRIHLEENEPNLKELQIYHDKHMKDYEKVKKDLVALKSRKNGLEDSITR 1754
            I K   Q++  F  E L  L G+   L+ELE+ R     + E E+I+   LR ++ H P  IT+EIE A+  AR +N   ++ L    T  ++K+   +   S +L+  NL    L    + +   +++ V LLNQH+++KA   I +NE     +D  + +++ +    +L E MI +R +  EEK+ ++ E  +T+     Q  +NS+  +IY +L      TSL  +++  I ++     G   EI+  Q    +L E ++     +  + QKI   +  I E    + +     NE+I  L E    VK   Q L+E H    E ++   + E  +           D  K++++  AA   K+   G+L  E++ +E       EN       + A V   K+ L KE + R  +Q    +L   + L++     F   +  +I + K        E + L+   +Q   +I   +++ +K K   S+ +  L+ E  +L   ++LL+  +  E EK  S  +I+L      LKE +  H     +YE++K  +  LK+++  LE S+ R
Sbjct:   27 IEKQLRQEELGFDEEALQYLMGIADALKELEHARRATRELLEEETIRTSKLRYRIQHLPGMITKEIEEAVLSARLLNASELQQLQSELTNKMQKLEHAVRSQS-ELEEMNLF---LSQHGKTLGDAYQQAVDLLNQHMAEKASLNIIVNETHVKCKDAQDAVIEYKNRTEDLAEDMITEREIFFEEKRHLIDEIKETELNTRAQEEQNSKKKEIYVHL------TSLLFDEEEKISKEKEIIGGIKDEILLLQASHARLTEKLDVKRQESQNLAQKIYHFETCIEEMKDRYTKESKSLNEKISELGEEMDIVKKLHQTLTEQHKQLMEENQTTREREDKEYAKKQ------DTAKQLEQIRAALSEKMELYGKLKKEIKILELETQRQVENGRNRTEQLAARVEESKEVLAKETQNRKTLQVKREELSKDLELWKIAEETFTNQLKERIANGKKDIAALTKEVNHLLKTIEQWDNQIHTLTEEIDKAKEAYSDMERGLSAEIDKLQGQLNLLSENLVSETEKLAS--KINL------LKEAEEKHSMAENNYERLKNKVAELKNQQRSLEMSMKR 577
[Close]
BLAST of SMED30007579 vs. TrEMBL
Match: A0A1I8GRF7 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig023024g3 PE=4 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 1.989e-72
Identity = 214/711 (30.10%), Postives = 364/711 (51.20%), Query Frame = 3 
Query:  135 FSSENLSDLKGMISCLQELENERFIAHSVWETESIKYEALRNKLVHYPXXXXXXXXXXXXXXXXMNEKTIKNLTETLEKINSNIDKHSTDLDRFNLDNEKLIPEFEQMKVKHEEIVVLLNQHLSKKADKQIELNEIRNTIRDFNENIVQLEEDVFNLKETMIKDRAVAREEKKRILSETNKTQNLLDVQNTKNSELNKIYQNLKHEATETSLAVNDKMTIYQKYIKNIGEIVKRQGQLEESIENMTWSNSQIKQKIDETDKKILESTFDFKEWQAQANEEIKMLSESVKMQQQ--------------ILSELHFVXXXXXXXXXXXXXXXXXVSMHLRSLLDKLKEIDENSAAKVSDVGQLVYEMEEMEKNIITSKENHEATVSAIKAHVSSLKKQLEKERKQRTVVQQDNSKLQDQINLFRGEHMKFMRDVNSKINDSKSEHSRLISLYQQLKKKIKEESDQSEKLKILISENKENLTREDTELTNSISLLNRQIFEMEKDGSEKRIHLEENEPNLKELQIYHDKHMKDYEKVKKDLVALKSRKNGLEDSITRTTXXXXXXXXXXXXXXXXXXXXXXXFDLQIQDEAKDRSDIEKSIYVNGCKISTVKEEICRLQHEINKMNQKINLLRINWEQAIHVTSSIKQEINGHKVKLQESWDKDRTMENTFKDDEISVIGRLKELLKSTETRQVLIADISDKLFVEINQFDQFL 2225
            F   ++  +  +I  L ELE  R  A  + ETE+IK  A+R+KL+HYP EI  EI  A++ AR +NE TI  L   L++I   I+   T   + + + E L PE + +K+  E  V  LN+ L+ KA +QI LNE R+T+R  N NIV LEEDV  LKE M+ +RA  RE K+++  ET +T    + Q  KN E  ++   +  E  ET+   ND     QK  +    +  ++    + IE     N  ++ +ID   +     T + +   AQ  + ++  +E  + Q++              +L E   V+E+               +  +R   ++L+E   + A+K  D+G+L  E+ +ME   +   + H + V      ++ +K+QL +ER +R  VQ  N KLQD I+ F  E   F R +N  I D K E+  L   + +L  KIKE++D+  +L+  +   + +      +    I  L R +  + +D +++   LEE  P   E + + D+ + DY+ +KK +VALK+RK GLE+S  RT   + +    + +LE EK+    + + Q+++ A++R   EK IY  GCK+ TV EE  RL++ I    Q+   +R+ WE A+H     ++     + +L++ W++D  M + F++ ++ ++  L +++  TE R+  +  ++D L  E++  D FL
Sbjct:   37 FKESDVGHIDDIIDALHELELHRNKAKDILETETIKCCAVRHKLMHYPDEINREIHEAVKAARSLNEDTINGLKRQLQEIIDEIEYLETHAKQLDAETEGLGPERDVIKLVFEAEVAKLNERLADKAGEQISLNENRDTVRSANVNIVDLEEDVVRLKEQMVVERAQHRETKQKLAEETGETVKKFNAQKEKNDEKKQVLAEVSVELAETTKERNDLTKQKQKLEEKNSSLEAQEADTRQRIERQMERNKTLRDEIDRIRQLNKSMTENHQRLMAQMKKTVEDFNEKSRRQEKRRDLSIQKKEELRDVLHEALLVREQD--------------AKTVREKSEELQEARNDLASKAEDIGRLQQEIIDMENRRMELADAHRSAVLTYNKQIAEMKEQLTRERSERMTVQDTNDKLQDTIDKFNKEQNAFTRQMNKLITDLKHENVALNDEHNELVGKIKEDTDRRARLEGELERGRRDFAEVTKQKEGIIDFLERDLERLGQDRTDRSRELEELLPKFAEFEAFFDRTLADYDALKKKIVALKNRKTGLEESSKRTDSQIGQLGNEISELEREKQRKLAQAERQLEELAEERMRSEKDIYSLGCKLKTVLEENARLRNGIQGFEQRTGRMRLTWESALHAKVRQEERRRAARERLEDGWEEDDAMRSEFQEADLRLLANLADIVGETEERREALERVTDSLETELSSLDSFL 733
[Close]
BLAST of SMED30007579 vs. TrEMBL
Match: A0A267FCU5 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig023024g1 PE=4 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.035e-70
Identity = 213/711 (29.96%), Postives = 363/711 (51.05%), Query Frame = 3 
Query:  135 FSSENLSDLKGMISCLQELENERFIAHSVWETESIKYEALRNKLVHYPXXXXXXXXXXXXXXXXMNEKTIKNLTETLEKINSNIDKHSTDLDRFNLDNEKLIPEFEQMKVKHEEIVVLLNQHLSKKADKQIELNEIRNTIRDFNENIVQLEEDVFNLKETMIKDRAVAREEKKRILSETNKTQNLLDVQNTKNSELNKIYQNLKHEATETSLAVNDKMTIYQKYIKNIGEIVKRQGQLEESIENMTWSNSQIKQKIDETDKKILESTFDFKEWQAQANEEIKMLSESVKMQQQ--------------ILSELHFVXXXXXXXXXXXXXXXXXVSMHLRSLLDKLKEIDENSAAKVSDVGQLVYEMEEMEKNIITSKENHEATVSAIKAHVSSLKKQLEKERKQRTVVQQDNSKLQDQINLFRGEHMKFMRDVNSKINDSKSEHSRLISLYQQLKKKIKEESDQSEKLKILISENKENLTREDTELTNSISLLNRQIFEMEKDGSEKRIHLEENEPNLKELQIYHDKHMKDYEKVKKDLVALKSRKNGLEDSITRTTXXXXXXXXXXXXXXXXXXXXXXXFDLQIQDEAKDRSDIEKSIYVNGCKISTVKEEICRLQHEINKMNQKINLLRINWEQAIHVTSSIKQEINGHKVKLQESWDKDRTMENTFKDDEISVIGRLKELLKSTETRQVLIADISDKLFVEINQFDQFL 2225
            F   ++  +  +I  L ELE  R  A  + ETE+IK  A+R+KL+HYP EI  EI  A++ AR +NE TI  L   L+ I   I+   T   + + + E L PE + +K+  E  V  LN+ L+ KA +QI LNE R+T+R  N NIV LEEDV  LKE M+ +RA  RE K+++  ET +T    + Q  KN E  ++   +  E  ET+   ND     QK  +    +  ++    + IE     N  ++ +I+   +     T + +   AQ  + ++  +E  + Q++              +L E   V+E+               +  +R   ++L+E   + A+K  D+G+L  E+ +ME   +   + H + V      ++ +K+QL +ER +R  VQ  N KLQD I+ F  E   F R +N  I D K E+  L   + +L  KIKE++D+  +L+  +   + +      +    I  L R +  + +D +++   LEE  P   E + + D+ + DY+ +KK +VALK+RK GLE+S  RT   + +    + +LE EK+    + + Q+++ A++R   EK IY  GCK+ TV EE  RL++ I    Q+   +R+ WE A+H     ++     + +L++ W++D  M + F++ ++ ++  L +++  TE R+  +  ++D L  E++  D FL
Sbjct:   37 FKESDVGHIDDIIDALHELELHRNKAKDILETETIKCCAVRHKLMHYPDEINREIHEAVKAARSLNEDTINGLKRQLQDIIDEIEYLETHAKQLDAETEGLGPERDVIKLVFEAEVAKLNERLADKAGEQISLNENRDTVRSANVNIVDLEEDVVRLKEQMVVERAQHRETKQKLAEETGETVQKFNAQKEKNDEKKQVLAEVSVELAETTKERNDLTKQKQKLEEKNSSLEAQEADTRQRIERQMERNKTLRDEIERIRQLNKSMTENHQRLMAQMKKSVEDFNEKSRRQEKRRDLSIQKKEELSDVLHEALLVREQD--------------AKTVREKSEELQEARNDLASKAEDIGRLQQEIIDMENRRMELADAHRSAVLTYNKQIAEMKEQLTRERSERMTVQDTNDKLQDTIDKFNKEQNAFTRQMNKLITDLKHENVALNDEHNELVGKIKEDTDRRARLEGELERGRRDFAEVTKQKEGIIDFLERDLERLGQDRTDRSRELEELLPKFAEFEAFFDRTLADYDALKKKIVALKNRKTGLEESSKRTDSQIGQLGNEISELEREKQRKLAQAERQLEELAEERMRSEKDIYSLGCKLKTVLEENARLRNGIQGFEQRTGRMRLTWESALHAKVRQEERRRAARERLEDGWEEDDVMRSEFQEVDLRLLVNLADIVGETEERREALERVTDSLETELSSLDSFL 733
[Close]
BLAST of SMED30007579 vs. TrEMBL
Match: A0A267GNI1 (Uncharacterized protein (Fragment) OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig023024g2 PE=4 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 9.044e-70
Identity = 212/711 (29.82%), Postives = 363/711 (51.05%), Query Frame = 3 
Query:  135 FSSENLSDLKGMISCLQELENERFIAHSVWETESIKYEALRNKLVHYPXXXXXXXXXXXXXXXXMNEKTIKNLTETLEKINSNIDKHSTDLDRFNLDNEKLIPEFEQMKVKHEEIVVLLNQHLSKKADKQIELNEIRNTIRDFNENIVQLEEDVFNLKETMIKDRAVAREEKKRILSETNKTQNLLDVQNTKNSELNKIYQNLKHEATETSLAVNDKMTIYQKYIKNIGEIVKRQGQLEESIENMTWSNSQIKQKIDETDKKILESTFDFKEWQAQANEEIKMLSESVKMQQQ--------------ILSELHFVXXXXXXXXXXXXXXXXXVSMHLRSLLDKLKEIDENSAAKVSDVGQLVYEMEEMEKNIITSKENHEATVSAIKAHVSSLKKQLEKERKQRTVVQQDNSKLQDQINLFRGEHMKFMRDVNSKINDSKSEHSRLISLYQQLKKKIKEESDQSEKLKILISENKENLTREDTELTNSISLLNRQIFEMEKDGSEKRIHLEENEPNLKELQIYHDKHMKDYEKVKKDLVALKSRKNGLEDSITRTTXXXXXXXXXXXXXXXXXXXXXXXFDLQIQDEAKDRSDIEKSIYVNGCKISTVKEEICRLQHEINKMNQKINLLRINWEQAIHVTSSIKQEINGHKVKLQESWDKDRTMENTFKDDEISVIGRLKELLKSTETRQVLIADISDKLFVEINQFDQFL 2225
            F   ++  +  +I  L ELE  R  A  + ETE+IK  A+R+KL+HYP EI  EI  A++ AR +NE TI  L   L++I   I+   T   + + + E L PE + +K+  E  V  LN+ L+ KA +QI LNE R+T+R  N NIV LEEDV  LKE M+ +RA  RE K+++  ET +T    + Q  KN E  ++   +  E  ET+   ND     QK  +    +  ++    +  E     N  ++ +I+   +     T + +   AQ  + ++  +E  + Q++              +L E   V+E+               +  +R   ++L+E   + A+K  D+G+L  E+ +ME   +   + H + V      ++ +K+QL +ER +R  VQ  N KLQD I+ F  E   F R +N  I D K E+  L   + +L  KIKE++D+  +L+  +   + +      +    I  L R +  + +D +++   LEE  P   E + + D+ + DY+ +KK +VALK+RK GLE+S  RT   + +    + +LE EK+    + + Q+++ A++R   EK IY  GCK+ TV EE  RL++ I    Q+   +R+ WE A+H     ++     + +L++ W++D  M + F++ ++ ++  L +++  TE R+  +  ++D L  E++  D FL
Sbjct:   67 FKESDVGHIDDIIDALHELELHRNKAKDILETETIKCCAVRHKLMHYPDEINREIHEAVKAARSLNEDTINGLKRQLQEIIDEIEYLETHAKQLDAETEGLGPERDVIKLVFEAEVAKLNERLADKAGEQISLNENRDTVRSANVNIVDLEEDVVRLKEQMVVERAQHRETKQKLAEETGETVQKFNAQKEKNDEKKQVLAEVSVELAETTKERNDLTKQKQKLEEKNSSLESQEADTRQRTERQMERNKMLRDEIERIRQLNKSMTENHQRLMAQMKKTVEDFNEKSRRQEKRRDLSIQKKEELRDVLDEAVLVREQD--------------AKTVREKSEELQEARNDLASKAEDIGRLQQEIIDMENRRMELADAHRSAVLTYNKQIAEMKEQLTRERSERMTVQDTNDKLQDTIDKFNKEQNAFTRQMNKLITDLKHENVALNDEHNELVGKIKEDTDRRARLEGELERGRRDFAEVTKQKEGIIDFLERDLERLGQDRTDRSRELEELLPKFAEFEAFFDQTLADYDALKKKIVALKNRKTGLEESSKRTDSQIGQLGNEISELEREKQRKLAQAERQLEELAEERMRSEKDIYSLGCKLKTVLEENARLRNGIQGFEQRTGRMRLTWESALHAKVRQEERRRAARERLEDGWEEDDVMRSEFQEVDLRLLVNLADIVGETEERREALERVTDSLETELSSLDSFL 763
[Close]
BLAST of SMED30007579 vs. TrEMBL
Match: A0A1I8FXE2 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 9.874e-63
Identity = 205/711 (28.83%), Postives = 352/711 (49.51%), Query Frame = 3 
Query:  135 FSSENLSDLKGMISCLQELENERFIAHSVWETESIKYEALRNKLVHYPXXXXXXXXXXXXXXXXMNEKTIKNLTETLEKINSNIDKHSTDLDRFNLDNEKLIPEFEQMKVKHEEIVVLLNQHLSKKADKQIELNEIRNTIRDFNENIVQLEEDVFNLKETMIKDRAVAREEKKRILSETNKTQNLLDVQNTKNSELNKIYQNLKHEATETSLAVNDKMTIYQKYIKNIGEIVKRQGQLEESIENMTWSNSQIKQKIDETDKKILESTFDFKEWQAQANEEIKMLSESVKMQQQ--------------ILSELHFVXXXXXXXXXXXXXXXXXVSMHLRSLLDKLKEIDENSAAKVSDVGQLVYEMEEMEKNIITSKENHEATVSAIKAHVSSLKKQLEKERKQRTVVQQDNSKLQDQINLFRGEHMKFMRDVNSKINDSKSEHSRLISLYQQLKKKIKEESDQSEKLKILISENKENLTREDTELTNSISLLNRQIFEMEKDGSEKRIHLEENEPNLKELQIYHDKHMKDYEKVKKDLVALKSRKNGLEDSITRTTXXXXXXXXXXXXXXXXXXXXXXXFDLQIQDEAKDRSDIEKSIYVNGCKISTVKEEICRLQHEINKMNQKINLLRINWEQAIHVTSSIKQEINGHKVKLQESWDKDRTMENTFKDDEISVIGRLKELLKSTETRQVLIADISDKLFVEINQFDQFL 2225
            F   ++  +  +I  L ELE  R  A  + ETE+IK  A+R+KL+HYP EI  EI  A++ AR +NE TI  L   L++I   I+   T   + + + E L PE + +K+  E  V  LN+ L+ KA +QI LNE R+T+R  N NIV LEEDV  LKE M+                  +T    + Q  KN E  ++   +  E  ET+   ND     QK  +    +  ++    +  E     N  ++ +I+   +     T + +   AQ  + ++  +E  + Q++              +L E   V+E+               +  +R   ++L+E   + A+K  D+G+L  E+ +ME   +   + H + V      ++ +K+QL +ER +R  VQ  N KLQD I+ F  E   F R +N  I D K E+  L   + +L  KIKE++D+  +L+  +   + +      +    I  L R +  + +D +++   LEE  P   E + + D+ + DY+ +KK +VALK+RK GLE+S  RT   + +    + +LE EK+    + + Q+++ A++R   EK IY  GCK+ TV EE  RL++ I    Q+   +R+ WE A+H     ++     + +L++ W++D  M + F++ ++ ++  L +++  TE R+  +  ++D L  E++  D FL
Sbjct:   37 FKESDVGHIDDIIDALHELELHRNKAKDILETETIKCCAVRHKLMHYPDEINREIHEAVKAARSLNEDTINGLKRQLQEIIDEIEYLETHAKQLDAETEGLGPERDVIKLVFEAEVAKLNERLADKAGEQISLNENRDTVRSANVNIVDLEEDVVRLKEQMV-----------------GETVQKFNAQKEKNDEKKQVLAEVSVELAETTKERNDLTKQKQKLEEKNSSLESQEADTRQRTERQMERNKMLRDEIERIRQLNKSMTENHQRLMAQMKKTVEDFNEKSRRQEKRRDLSIQKKEELRDVLDEAVLVREQD--------------AKTVREKSEELQEARNDLASKAEDIGRLQQEIIDMENRRMELADAHRSAVLTYNKQIAEMKEQLTRERSERMTVQDTNDKLQDTIDKFNKEQNAFTRQMNKLITDLKHENVALNDEHNELVGKIKEDTDRRARLEGELERGRRDFAEVTKQKEGIIDFLERDLERLGQDRTDRSRELEELLPKFAEFEAFFDQTLADYDALKKKIVALKNRKTGLEESSKRTDSQIGQLGNEISELEREKQRKLAQAERQLEELAEERMRSEKDIYSLGCKLKTVLEENARLRNGIQGFEQRTGRMRLTWESALHAKVRQEERRRAARERLEDGWEEDDVMRSEFQEVDLRLLVNLADIVGETEERREALERVTDSLETELSSLDSFL 716
[Close]
BLAST of SMED30007579 vs. TrEMBL
Match: A0A1S3JUS7 (myosin-2 heavy chain OS=Lingula unguis OX=7574 GN=LOC106176295 PE=4 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 2.853e-53
Identity = 229/738 (31.03%), Postives = 378/738 (51.22%), Query Frame = 3 
Query:  135 FSSENLSDLKGMISCLQELENERFIAHSVWETESIKYEALRNKLVHYPXXXXXXXXXXXXXXXXMNEKTIKNLTETLEKINSNIDKHSTDLDRFNLDNEKLIPEFEQMKVKHEEIVVLLNQHLSKKADKQIELNEIRNTIRDFNENIVQLEEDVFNLKETMIKDRAVAREEKKR----ILSETNKTQNLLDVQNTKNSELNKIYQNLKHEATETSLAVNDKMTIYQKYIKNI-GEIVKRQGQLEESIENMTWSNSQIKQKIDETDKKILESTFDFKEWQAQANEEIKMLSESVKMQQQILSELHFVXXXXXXXXXXXXXXXXXVSMHLRSLLDKLKEIDEN--------SAAKVS------DVGQLVYEMEEMEKNIITSKENHEATVSAIKAHVSSLKKQLEKERKQRT--VVQQDNSKLQDQINLFRGEHMKFMRDVNSKINDSKSEHSRLISLYQQLKKKIKEESDQS-----EKLKILISEN----KENLTREDTELTNSISLLNRQIFEMEKDGSEKRIHLEENEPNLKELQIYHDKHMKDYEKVKKDLVALKSRKNGLEDSITRTTXXXXXXXXXXXXXXXXXXXXXXXFDLQIQDEAKDRSDIEKSIYVNGCKISTVKEEICRLQHEINKMNQKINLLRINWEQAIHVTSSIKQEINGHKVKLQESWDKDRTMENTFKDDEISVIGRLKELLKSTETRQVLIADISDKLFVEINQFDQFLNVMATISPRKN 2258
            F   ++ ++  +I  L ELE ER   H + E E+I+   LR+KL  +P +I  EIE A++ AR  N   ++ L   LEK+  NI+     L     +N KL+PE + M+ KHEEI+  LN  L++KA  QI LNE R+ +R  N+NIV LEE++  LKE MI++RA AR EKKR    +   T K +   D    K  EL+ + + L             ++ + +K I+       K +GQ E ++  M   N +IKQ  +   K+I        E + ++N + K   ES    +  L EL    ++ S++ E+ +  K  + M +   +++ ++  +N         AAK++      + G+L  E   ME+ I+  KE HE  V+ +   +   + QL KER +RT   +Q +   +Q  ++ FR E+ +FM  +N KIND+K++   L     QL+K I+ E DQ+     E+L++   +N    K +L +E T+L  S+  L ++  E EK       +LEE  P L  L+  HD   K+YE  KK++V LK++K GLE++  RT K +EK      K ++E KL +E+  +Q++  A++   +E  IY  GCK+ TV EE  + +  I K    I  L  +  +   +  ++  E+   K  L + W+ D  +E  + + + + +G + +LL  TE R+  I+ I+++L  E+     FL  +A   P+ +
Sbjct:   31 FKENDVENIDSIIEALGELEAERDKLHELLEIETIQASVLRHKLQVFPGKIKGEIEAAVKSARQSNADEVQRLQSQLEKVTKNIEFLELKLQELEEENAKLLPERDGMRKKHEEIIATLNVRLAEKATNQISLNETRDQLRATNQNIVNLEENILILKEDMIQERADARMEKKRLKKAVYDTTMKVREQRDANIVKKKELDALLEKLAES--------EGQLDMIRKSIRRYDTSRAKLEGQ-ERAL--MAQLNREIKQNQELKQKRI--------EIEEESNRQQKEFEESKAALEGKLEELEVEIQKQSKKFERLDGQKMILEMDVEDAMEQRRKDAQNVEEINGILQAAKITLAKKAEETGRLTNENVYMEEAIVKLKETHELVVATLNKQIEEYRDQLSKERAERTEMELQAERDDVQKNVDDFRQENQRFMALMNKKINDTKNQIESLNKEGIQLQKDIR-EGDQTIKRRHEELRV-AKQNYVSMKASLEKELTDLEASVEHLGKRKTEREK-------YLEEKMPVLSSLEEEHDAKQKEYEARKKEIVVLKNKKTGLEETCKRTQKNIEKLEEPTVKNQQELKLKKEESLVQLKQHAEETKVVESDIYTEGCKLKTVMEENHKFREAIEKYETDIVDLNEHKGKNEQMKQTLLDELIALKGILLKGWEADHALEKVYAEKDQTTVGEITDLLHRTEKREQKISSITEQLEGELLALHNFLENVAKRRPKPS 740
[Close]
BLAST of SMED30007579 vs. Planmine SMEST
Match: SMESG000038305.1 (SMESG000038305.1)

HSP 1 Score: 820.846 bits (2119), Expect = 0.000e+0
Identity = 477/526 (90.68%), Postives = 477/526 (90.68%), Query Frame = 3 
Query:  720 LNKIYQNLKHEATETSLAVNDKMTIYQKYIKNIGEIVKRQGQLEESIENMTWSNSQIKQKIDETDKKILESTFDFKEWQAQANEEIKMLSESVKMQQQILSELHFVXXXXXXXXXXXXXXXXXVSMHLRSLLDKLKEIDENSAAKVSDVGQLVYEMEEMEKNIITSKENHEATVSAIKAHVSSLKKQLEKERKQRTVVQQDNSKLQDQINLFRGEHMKFMRDVNSKINDSKSEHSRLISLYQQLKKKIKEESDQSEKLKILISENKENLTREDTELTNSISLLNRQIFEMEKDGSEKRIHLEENEPNLKELQIYHDKHMKDYEKVKKDLVALKSRKNGLEDSITRTTXXXXXXXXXXXXXXXXXXXXXXXFDLQIQDEAKDRSDIEKSIYVNGCKISTVKEEICRLQHEINKMNQKINLLRINWEQAIHVTSSIKQEINGHKVKLQESWDKDRTMENTFKDDEISVIGRLKELLKSTETRQVLIADISDKLFVEINQFDQFLNVMATISPRKNLELDKVKIQKSVD 2297
            L KIYQNLKHEATETSLAVNDKMTIYQKYIKNIGEIVKRQGQLEESIENMTWSNSQIKQKIDETDKKILESTFDFKEWQAQANEEIKMLSESVKMQQQILSELHFVKEEASEELEKSEKIKDEVSMHLRSLLDKLKEIDENSAAKVSDVGQLVYEMEEMEKNIITSKENHEATVSAIKAHVSSLKKQLEKERKQRTVVQQDNSKLQDQINLFRGEHMKFMRDVNSKINDSKSEHSRLISLYQQLKKKIKEESDQSEKLKILISENKENLTREDTELTNSISLLNRQIFEMEKDGSEKRIHLEENEPNLKELQIYHDKHMKDYEKVKKDLVALKSRKNGLEDSITRTTKALEKESATLKKLEEEKKLIEEKFDLQIQDEAKDRSDIEKSIYVNG                                            I    VKLQESWDKDRTMENTFKDDEISVIGRLKELLKSTETRQVLIADISDKLFVEINQFDQFLNVMATISPRKNLELDKVKIQKSVD
Sbjct:  292 LEKIYQNLKHEATETSLAVNDKMTIYQKYIKNIGEIVKRQGQLEESIENMTWSNSQIKQKIDETDKKILESTFDFKEWQAQANEEIKMLSESVKMQQQILSELHFVKEEASEELEKSEKIKDEVSMHLRSLLDKLKEIDENSAAKVSDVGQLVYEMEEMEKNIITSKENHEATVSAIKAHVSSLKKQLEKERKQRTVVQQDNSKLQDQINLFRGEHMKFMRDVNSKINDSKSEHSRLISLYQQLKKKIKEESDQSEKLKILISENKENLTREDTELTNSISLLNRQIFEMEKDGSEKRIHLEENEPNLKELQIYHDKHMKDYEKVKKDLVALKSRKNGLEDSITRTTKALEKESATLKKLEEEKKLIEEKFDLQIQDEAKDRSDIEKSIYVNGF-------------------------------------------IEFPIVKLQESWDKDRTMENTFKDDEISVIGRLKELLKSTETRQVLIADISDKLFVEINQFDQFLNVMATISPRKNLELDKVKIQKSVD 774
[Close]
BLAST of SMED30007579 vs. Planmine SMEST
Match: SMESG000038305.1 (SMESG000038305.1)

HSP 1 Score: 806.594 bits (2082), Expect = 0.000e+0
Identity = 470/523 (89.87%), Postives = 470/523 (89.87%), Query Frame = 3 
Query:  720 LNKIYQNLKHEATETSLAVNDKMTIYQKYIKNIGEIVKRQGQLEESIENMTWSNSQIKQKIDETDKKILESTFDFKEWQAQANEEIKMLSESVKMQQQILSELHFVXXXXXXXXXXXXXXXXXVSMHLRSLLDKLKEIDENSAAKVSDVGQLVYEMEEMEKNIITSKENHEATVSAIKAHVSSLKKQLEKERKQRTVVQQDNSKLQDQINLFRGEHMKFMRDVNSKINDSKSEHSRLISLYQQLKKKIKEESDQSEKLKILISENKENLTREDTELTNSISLLNRQIFEMEKDGSEKRIHLEENEPNLKELQIYHDKHMKDYEKVKKDLVALKSRKNGLEDSITRTTXXXXXXXXXXXXXXXXXXXXXXXFDLQIQDEAKDRSDIEKSIYVNGCKISTVKEEICRLQHEINKMNQKINLLRINWEQAIHVTSSIKQEINGHKVKLQESWDKDRTMENTFKDDEISVIGRLKELLKSTETRQVLIADISDKLFVEINQFDQFLNVMATISPRKNLELDKVKIQK 2288
            L KIYQNLKHEATETSLAVNDKMTIYQKYIKNIGEIVKRQGQLEESIENMTWSNSQIKQKIDETDKKILESTFDFKEWQAQANEEIKMLSESVKMQQQILSELHFVKEEASEELEKSEKIKDEVSMHLRSLLDKLKEIDENSAAKVSDVGQLVYEMEEMEKNIITSKENHEATVSAIKAHVSSLKKQLEKERKQRTVVQQDNSKLQDQINLFRGEHMKFMRDVNSKINDSKSEHSRLISLYQQLKKKIKEESDQSEKLKILISENKENLTREDTELTNSISLLNRQIFEMEKDGSEKRIHLEENEPNLKELQIYHDKHMKDYEKVKKDLVALKSRKNGLEDSITRTTKALEKESATLKKLEEEKKLIEEKFDLQIQDEAKDRSDIEKSIYVNG                                            I    VKLQESWDKDRTMENTFKDDEISVIGRLKELLKSTETRQVLIADISDKLFVEINQFDQFLNVMATISPRKNLELDK    K
Sbjct:  292 LEKIYQNLKHEATETSLAVNDKMTIYQKYIKNIGEIVKRQGQLEESIENMTWSNSQIKQKIDETDKKILESTFDFKEWQAQANEEIKMLSESVKMQQQILSELHFVKEEASEELEKSEKIKDEVSMHLRSLLDKLKEIDENSAAKVSDVGQLVYEMEEMEKNIITSKENHEATVSAIKAHVSSLKKQLEKERKQRTVVQQDNSKLQDQINLFRGEHMKFMRDVNSKINDSKSEHSRLISLYQQLKKKIKEESDQSEKLKILISENKENLTREDTELTNSISLLNRQIFEMEKDGSEKRIHLEENEPNLKELQIYHDKHMKDYEKVKKDLVALKSRKNGLEDSITRTTKALEKESATLKKLEEEKKLIEEKFDLQIQDEAKDRSDIEKSIYVNGF-------------------------------------------IEFPIVKLQESWDKDRTMENTFKDDEISVIGRLKELLKSTETRQVLIADISDKLFVEINQFDQFLNVMATISPRKNLELDKFTFNK 771
[Close]
BLAST of SMED30007579 vs. Planmine SMEST
Match: SMESG000038305.1 (SMESG000038305.1)

HSP 1 Score: 639.802 bits (1649), Expect = 0.000e+0
Identity = 346/347 (99.71%), Postives = 346/347 (99.71%), Query Frame = 3 
Query:  720 LNKIYQNLKHEATETSLAVNDKMTIYQKYIKNIGEIVKRQGQLEESIENMTWSNSQIKQKIDETDKKILESTFDFKEWQAQANEEIKMLSESVKMQQQILSELHFVXXXXXXXXXXXXXXXXXVSMHLRSLLDKLKEIDENSAAKVSDVGQLVYEMEEMEKNIITSKENHEATVSAIKAHVSSLKKQLEKERKQRTVVQQDNSKLQDQINLFRGEHMKFMRDVNSKINDSKSEHSRLISLYQQLKKKIKEESDQSEKLKILISENKENLTREDTELTNSISLLNRQIFEMEKDGSEKRIHLEENEPNLKELQIYHDKHMKDYEKVKKDLVALKSRKNGLEDSITRTT 1760
            L KIYQNLKHEATETSLAVNDKMTIYQKYIKNIGEIVKRQGQLEESIENMTWSNSQIKQKIDETDKKILESTFDFKEWQAQANEEIKMLSESVKMQQQILSELHFVKEEASEELEKSEKIKDEVSMHLRSLLDKLKEIDENSAAKVSDVGQLVYEMEEMEKNIITSKENHEATVSAIKAHVSSLKKQLEKERKQRTVVQQDNSKLQDQINLFRGEHMKFMRDVNSKINDSKSEHSRLISLYQQLKKKIKEESDQSEKLKILISENKENLTREDTELTNSISLLNRQIFEMEKDGSEKRIHLEENEPNLKELQIYHDKHMKDYEKVKKDLVALKSRKNGLEDSITRTT
Sbjct:  292 LEKIYQNLKHEATETSLAVNDKMTIYQKYIKNIGEIVKRQGQLEESIENMTWSNSQIKQKIDETDKKILESTFDFKEWQAQANEEIKMLSESVKMQQQILSELHFVKEEASEELEKSEKIKDEVSMHLRSLLDKLKEIDENSAAKVSDVGQLVYEMEEMEKNIITSKENHEATVSAIKAHVSSLKKQLEKERKQRTVVQQDNSKLQDQINLFRGEHMKFMRDVNSKINDSKSEHSRLISLYQQLKKKIKEESDQSEKLKILISENKENLTREDTELTNSISLLNRQIFEMEKDGSEKRIHLEENEPNLKELQIYHDKHMKDYEKVKKDLVALKSRKNGLEDSITRTT 638

HSP 2 Score: 164.081 bits (414), Expect = 6.352e-42
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 3 
Query: 2058 ESWDKDRTMENTFKDDEISVIGRLKELLKSTETRQVLIADISDKLFVEINQFDQFLNVMATISPRKNLELDKVKIQKSVD 2297
            ESWDKDRTMENTFKDDEISVIGRLKELLKSTETRQVLIADISDKLFVEINQFDQFLNVMATISPRKNLELDKVKIQKSVD
Sbjct:  649 ESWDKDRTMENTFKDDEISVIGRLKELLKSTETRQVLIADISDKLFVEINQFDQFLNVMATISPRKNLELDKVKIQKSVD 728
[Close]
BLAST of SMED30007579 vs. Planmine SMEST
Match: SMESG000038298.1 (SMESG000038298.1)

HSP 1 Score: 170.629 bits (431), Expect = 4.684e-50
Identity = 86/94 (91.49%), Postives = 92/94 (97.87%), Query Frame = 3 
Query:  327 MNEKTIKNLTETLEKINSNIDKHSTDLDRFNLDNEKLIPEFEQMKVKHEEIVVLLNQHLSKKADKQIELNEIRNTIRDFNENIVQLEEDVFNLK 608
            MNEKTIKNLTETLEKINSNIDKHSTDLDRFNLDNEKLIPEFEQMKVKHEEIVVLLNQHLSKKADKQIELNEIRNTIRDFNEN+ +L++ +FN+K
Sbjct:    1 MNEKTIKNLTETLEKINSNIDKHSTDLDRFNLDNEKLIPEFEQMKVKHEEIVVLLNQHLSKKADKQIELNEIRNTIRDFNENVSKLKKYLFNIK 94
The following BLAST results are available for this feature:
BLAST of SMED30007579 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007579 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007579 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007579 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007579 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 1
Match NameE-valueIdentityDescription
fdxacb13.575e-1025.74ferredoxin-fold anticodon binding domain containin... [more]
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BLAST of SMED30007579 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007579 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007579 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A1I8GRF71.989e-7230.10Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A267FCU51.035e-7029.96Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A267GNI19.044e-7029.82Uncharacterized protein (Fragment) OS=Macrostomum ... [more]
A0A1I8FXE29.874e-6328.83Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A1S3JUS72.853e-5331.03myosin-2 heavy chain OS=Lingula unguis OX=7574 GN=... [more]
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BLAST of SMED30007579 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007579 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007579 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007579 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007579 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007579 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 4
Match NameE-valueIdentityDescription
SMESG000038305.10.000e+090.68SMESG000038305.1[more]
SMESG000038305.10.000e+089.87SMESG000038305.1[more]
SMESG000038305.16.352e-4299.71SMESG000038305.1[more]
SMESG000038298.14.684e-5091.49SMESG000038298.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30007579 ID=SMED30007579|Name=SMED30007579|organism=Schmidtea mediterranea sexual|type=transcript|length=2335bp
CATGGTGATAGATATCTGAACAATTTAAAATGATAGAAAATTCAATATTA
ATATCTGATAAAAAGTTATGGATTAAAAAAATTAATGAAAATCTAAATGG
TATTTTGAAAGTTTTTAATCAACAACAAAGTAAATTTTCGTCTGAAAATT
TGAGTGATCTTAAAGGAATGATAAGTTGTTTACAGGAACTTGAAAATGAA
CGCTTTATTGCTCATAGTGTTTGGGAAACAGAATCAATAAAATATGAAGC
TTTGAGAAATAAATTAGTTCATTATCCTATTGAAATAACCGAAGAAATTG
AAAGAGCCATTAGAGGAGCCAGAGGAATGAATGAAAAAACGATCAAAAAT
TTAACTGAAACACTCGAAAAAATAAATTCTAATATCGACAAACATTCAAC
CGATTTGGATAGATTCAATTTGGACAATGAAAAATTAATTCCAGAATTCG
AGCAAATGAAGGTGAAACACGAAGAAATTGTGGTTTTACTTAATCAACAT
TTGTCAAAGAAGGCTGATAAACAAATAGAACTCAATGAAATAAGGAACAC
TATAAGAGATTTCAATGAAAATATTGTACAGTTGGAAGAAGATGTATTTA
ATTTAAAAGAAACAATGATCAAAGACCGAGCAGTCGCGAGAGAGGAAAAG
AAAAGGATTTTATCAGAAACTAATAAAACTCAAAATCTTTTGGATGTTCA
AAATACAAAAAACTCCGAGTTGAACAAAATTTATCAAAATTTGAAACACG
AAGCTACTGAAACTTCGTTAGCTGTAAATGATAAAATGACTATTTATCAG
AAATATATTAAAAATATTGGGGAAATTGTCAAACGACAAGGCCAGCTTGA
GGAGTCGATTGAAAACATGACCTGGTCAAATTCGCAAATCAAACAAAAAA
TAGATGAAACGGATAAAAAAATTCTTGAATCCACTTTTGATTTTAAAGAA
TGGCAAGCACAAGCTAATGAAGAAATAAAGATGTTATCGGAAAGTGTAAA
AATGCAGCAACAAATACTCTCTGAATTGCACTTTGTTAAAGAAGAAGCTT
CTGAAGAGTTGGAAAAGAGCGAAAAAATTAAAGATGAAGTTTCAATGCAT
TTACGATCATTACTTGACAAGTTGAAAGAAATTGATGAAAATAGTGCAGC
CAAAGTCTCTGATGTTGGTCAATTGGTTTACGAAATGGAAGAAATGGAAA
AAAACATTATAACGTCTAAAGAAAATCACGAAGCTACTGTTTCCGCTATC
AAAGCGCATGTGAGTAGTTTGAAGAAGCAGCTAGAAAAAGAAAGAAAACA
AAGAACGGTTGTTCAACAAGACAATAGTAAACTTCAGGATCAAATAAATT
TATTTCGAGGAGAGCACATGAAATTTATGCGAGATGTAAATTCAAAAATA
AATGACAGCAAATCTGAACATTCTCGGTTAATATCATTGTATCAACAATT
GAAGAAAAAAATTAAGGAGGAATCGGATCAATCGGAAAAGTTAAAAATTT
TAATTTCTGAAAATAAAGAAAATTTAACAAGAGAAGACACTGAATTAACA
AATAGTATCAGTCTATTAAATAGACAAATATTTGAAATGGAAAAGGATGG
GAGTGAAAAACGTATACATTTAGAAGAAAATGAGCCAAATCTGAAAGAAT
TACAAATTTATCATGATAAACACATGAAAGATTACGAAAAAGTAAAAAAA
GATTTAGTAGCTTTGAAAAGTAGAAAAAATGGACTTGAAGATTCTATTAC
ACGTACAACAAAAGCTCTTGAAAAAGAAAGTGCTACTCTTAAAAAGTTAG
AAGAGGAAAAAAAACTGATAGAAGAAAAATTTGATCTTCAAATTCAAGAC
GAAGCAAAAGATAGAAGTGATATTGAAAAAAGTATATATGTAAACGGATG
TAAGATCTCGACTGTTAAAGAAGAGATTTGCAGACTGCAGCATGAAATAA
ATAAAATGAATCAAAAAATCAACTTACTTCGAATAAATTGGGAACAAGCT
ATACATGTAACTAGCAGTATCAAGCAAGAAATAAATGGCCATAAAGTAAA
ATTACAGGAAAGTTGGGATAAAGACCGCACAATGGAAAATACATTCAAAG
ATGACGAGATTTCCGTTATAGGACGCTTGAAAGAATTGTTAAAAAGTACT
GAAACTCGTCAGGTTTTGATAGCCGACATATCTGACAAGTTATTTGTTGA
AATCAATCAATTTGATCAATTTCTGAACGTCATGGCAACGATTTCTCCAA
GAAAAAATTTGGAATTAGATAAAGTTAAAATACAGAAATCGGTCGATTAA
TTATAATGATTTTTTAATTTATTAGAAAATATATT
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protein sequence of SMED30007579-orf-1

>SMED30007579-orf-1 ID=SMED30007579-orf-1|Name=SMED30007579-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=757bp
MIENSILISDKKLWIKKINENLNGILKVFNQQQSKFSSENLSDLKGMISC
LQELENERFIAHSVWETESIKYEALRNKLVHYPIEITEEIERAIRGARGM
NEKTIKNLTETLEKINSNIDKHSTDLDRFNLDNEKLIPEFEQMKVKHEEI
VVLLNQHLSKKADKQIELNEIRNTIRDFNENIVQLEEDVFNLKETMIKDR
AVAREEKKRILSETNKTQNLLDVQNTKNSELNKIYQNLKHEATETSLAVN
DKMTIYQKYIKNIGEIVKRQGQLEESIENMTWSNSQIKQKIDETDKKILE
STFDFKEWQAQANEEIKMLSESVKMQQQILSELHFVKEEASEELEKSEKI
KDEVSMHLRSLLDKLKEIDENSAAKVSDVGQLVYEMEEMEKNIITSKENH
EATVSAIKAHVSSLKKQLEKERKQRTVVQQDNSKLQDQINLFRGEHMKFM
RDVNSKINDSKSEHSRLISLYQQLKKKIKEESDQSEKLKILISENKENLT
REDTELTNSISLLNRQIFEMEKDGSEKRIHLEENEPNLKELQIYHDKHMK
DYEKVKKDLVALKSRKNGLEDSITRTTKALEKESATLKKLEEEKKLIEEK
FDLQIQDEAKDRSDIEKSIYVNGCKISTVKEEICRLQHEINKMNQKINLL
RINWEQAIHVTSSIKQEINGHKVKLQESWDKDRTMENTFKDDEISVIGRL
KELLKSTETRQVLIADISDKLFVEINQFDQFLNVMATISPRKNLELDKVK
IQKSVD*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000020protonephridia
PLANA:0000034epidermis
PLANA:0000099neuron
PLANA:0000418head
PLANA:0002032epidermal cell
Vocabulary: INTERPRO
TermDefinition
IPR038834CCDC175
Vocabulary: molecular function
TermDefinition
GO:0000166nucleotide binding
GO:0003677DNA binding
GO:0005524ATP binding
Vocabulary: cellular component
TermDefinition
GO:0005694chromosome
GO:0005737cytoplasm
Vocabulary: biological process
TermDefinition
GO:0007062sister chromatid cohesion
GO:0030261chromosome condensation
GO:0051276chromosome organization
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 404..438
NoneNo IPR availableCOILSCoilCoilcoord: 337..357
NoneNo IPR availableCOILSCoilCoilcoord: 154..195
NoneNo IPR availableCOILSCoilCoilcoord: 552..607
NoneNo IPR availableCOILSCoilCoilcoord: 464..491
NoneNo IPR availableCOILSCoilCoilcoord: 221..241
NoneNo IPR availableCOILSCoilCoilcoord: 105..125
IPR038834Coiled-coil domain-containing protein 175PANTHERPTHR35347FAMILY NOT NAMEDcoord: 22..743