Ribosomal RNA processing 1-like protein

Overview
NameRibosomal RNA processing 1-like protein
Smed IDSMED30007399
Length (bp)1251
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Ribosomal RNA processing 1-like protein (SMED30007399) t-SNE clustered cells

Violin plots show distribution of expression levels for Ribosomal RNA processing 1-like protein (SMED30007399) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Ribosomal RNA processing 1-like protein (SMED30007399) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Ribosomal RNA processing 1-like protein (SMED30007399) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30007399

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 4

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30007399h1SMcG0020660 SmedASXL_013925SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30007399h1SMcG0020660 SmedASXL_013925SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
neoblastSMED30007399h1SMcG0020660 dd_Smed_v4_5604_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
zeta neoblastSMED30007399h1SMcG0020660 dd_Smed_v4_5604_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Ribosomal RNA processing 1-like protein vs. Ensembl Human
Match: RRP1B (ribosomal RNA processing 1B [Source:HGNC Symbol;Acc:HGNC:23818])

HSP 1 Score: 118.242 bits (295), Expect = 5.860e-28
Identity = 66/213 (30.99%), Postives = 115/213 (53.99%), Query Frame = 3 
Query:   54 VKFVKLFASSEYKIRNKAYKTIKFLLKSEFGTEKKQLSENDIIAMWKGLYVWLYMQDKPIYHEEIVEKIANLFPTIVSETTALQFMKAFFLTMIREWCKIDIYRLDKYYMMVREVLNACLKWLEAKNW--AHLTEWCAILKETVLTPSEAKGIGMKLHFVDIILDELVKAGVR---SDAVTKLTIEMILSMSSVNQQHIYVSKMNKRVIDRLV 677
            ++F +  ASSE  IR++A K ++  +  +   E    S+ +++ +WKGL+  +++QD+P+  EE+   IA L   + +      F++ F+ TM REW  ID  RLDKYYM++R VL    + L+   W  + +  +  +L + VL P      G++ HF+DI LDEL K G +   +D   K  I+    +++  + H  V  + + V + +V
Sbjct:   10 IQFAQRLASSEKGIRDRAVKKLRQYISVKTQRETGGFSQEELLKIWKGLFYCMWVQDEPLLQEELANTIAQLVHAVNNSAAQHLFIQTFWQTMNREWKGIDRLRLDKYYMLIRLVLRQSFEVLKRNGWEESRIKVFLDVLMKEVLCPESQSPNGVRFHFIDIYLDELSKVGGKELLADQNLKF-IDPFCKIAAKTKDHTLVQTIARGVFEAIV 221
[Close]
BLAST of Ribosomal RNA processing 1-like protein vs. Ensembl Human
Match: RRP1 (ribosomal RNA processing 1 [Source:HGNC Symbol;Acc:HGNC:18785])

HSP 1 Score: 102.834 bits (255), Expect = 3.225e-23
Identity = 53/173 (30.64%), Postives = 91/173 (52.60%), Query Frame = 3 
Query:   51 KVKFVKLFASSEYKIRNKAYKTIKFLLKSEFGTEKKQLSENDIIAMWKGLYVWLYMQDKPIYHEEIVEKIANLFPTIVSETTALQFMKAFFLTMIREWCKIDIYRLDKYYMMVREVLNACLKWLEAKNWAHLTEWCAILKETVLT--PSEAKGIGMKLHFVDIILDELVKAGV 563
            +++  +  A +E   R++A + ++  + +         + ++++ +WKGL+  ++MQDKP+  EE+   I+ L     +      F++AF+ TM REW  ID  RLDK+YM++R VLN  LK L+ + W        +         PS     G+K HF++I L+EL K G 
Sbjct:   10 EIQLAQRLAGNEQVTRDRAVRKLRKYIVARTQRAAGGFTHDELLKVWKGLFYCMWMQDKPLLQEELGRTISQLVHAFQTTEAQHLFLQAFWQTMNREWTGIDRLRLDKFYMLMRMVLNESLKVLKMQGWEERQIEELLELLMTEILHPSSQAPNGVKSHFIEIFLEELTKVGA 182
[Close]
BLAST of Ribosomal RNA processing 1-like protein vs. Ensembl Celegans
Match: rrp-1 (Ribosomal RNA processing protein 1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q18674])

HSP 1 Score: 96.2857 bits (238), Expect = 1.191e-21
Identity = 52/171 (30.41%), Postives = 90/171 (52.63%), Query Frame = 3 
Query:   54 VKFVKLFASSEYKIRNKAYKTIKFLLKSEFGTEKKQLSENDIIAMWKGLYVWLYMQDKPIYHEEIVEKIANLFPTIVSETTALQFMKAFFLTMIREWCKIDIYRLDKYYMMVREVLNACLKWLEAKNWAH--LTEWCAILKETVLTPSEAKGIGMKLHFVDIILDELVKAG 560
            V F +  A  E   R +A + +   ++ +  + KK   + D++ + KGL+  ++MQDK I  EE+ ++I  L     SE   ++F+  F  ++ +EW  ID +R+DK+ M VR ++ AC   L    W      E+  + +ET ++  ++    +K HF  I+LDEL  AG
Sbjct:   10 VVFAQKLACGEPATRQRALRVLHDWIRDQ--SAKKHFDDADLMRLCKGLHYVMWMQDKMILQEELADRIGGLINIFTSEEEKVRFVACFLKSLSKEWPHIDRWRMDKFLMEVRRMVRACFTHLAELKWKKDIRDEYWKVFQETTISTDKSFNEALKFHFASILLDELDAAG 178
[Close]
BLAST of Ribosomal RNA processing 1-like protein vs. Ensembl Fly
Match: Nnp-1 (gene:FBgn0022069 transcript:FBtr0080473)

HSP 1 Score: 103.219 bits (256), Expect = 2.234e-23
Identity = 55/189 (29.10%), Postives = 107/189 (56.61%), Query Frame = 3 
Query:   48 QKVKFVKLFASSEYKIRNKAYKTIKFLLKSEFGTEKKQLSENDIIAMWKGLYVWLYMQDKPIYHEEIVEKIANLFPTIVSETT-ALQFMKAFFLTMIREWCKIDIYRLDKYYMMVREVLNACLKWLEAKNWAH--LTEWCAILKETVLTPSEAKGIGMKLHFVDIILDELVKAGVRSDAVTKLTIEMIL 605
            Q+VK ++  A ++   RN+  + ++   K+  G+     +E+D + +WKGLY  ++M DKP+  EE+ EK+A +  +    T  +L +  AF  TM +E+  ID +R+DK+ M+ R ++   L++L+  NW    +  + + ++ +V++  + K  GM +H++D+  +EL KA   +  +T   + M L
Sbjct:   39 QEVKIIRALACNDVVERNRQIRILRKWFKARAGSSFP-FNEDDFMRIWKGLYYTMWMSDKPLVQEELAEKLAQMVDSFGGNTACSLAYFSAFMRTMCQEYFGIDQWRMDKFLMLTRRMVRYLLRFLKQNNWNADLIAAFNSSMQLSVMS-EQPKSRGMTMHYLDVFFEELAKAA--NGEITAAQVNMFL 223
[Close]
BLAST of Ribosomal RNA processing 1-like protein vs. Ensembl Zebrafish
Match: rrp1 (ribosomal RNA processing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9837])

HSP 1 Score: 95.9005 bits (237), Expect = 7.849e-21
Identity = 53/179 (29.61%), Postives = 93/179 (51.96%), Query Frame = 3 
Query:   33 MSNKFQKVKFVKLFASSEYKIRNKAYKTIKFLLKSEFGTEKKQLSENDIIAMWKGLYVWLYMQDKPIYHEEIVEKIANLFPTIVSETTALQFMKAFFLTMIREWCKIDIYRLDKYYMMVREVLNACLKWLEAKNWAH--LTEWCAILKETVLTPSEAKGIGMKLHFVDIILDELVKAGV 563
            M+ +  +V F +  A++E  +R+KA   ++  ++          SE +++ +WKGL+  L+MQD P+  EE+  KI+ L  +  +  +   F K F  TM REW  ID  RLDK+Y +VR +     + L+ + W    L E+  +  + +L  S A   G+ +H +++ + EL   G 
Sbjct:    1 MATQAAEVIFAQKLAANEKSVRSKALLKLRKYIRIRSERAPGGFSEEELLKIWKGLFYCLWMQDLPLLQEELSTKISALLFSFRTVDSQFLFFKTFLQTMKREWNGIDRLRLDKFYQLVRFIFRQMFEMLKKQEWEPSVLQEFLQLFSDQLLQSSSAAPSGLIMHIMELYMTELAAVGA 179
[Close]
BLAST of Ribosomal RNA processing 1-like protein vs. Ensembl Xenopus
Match: sgca (sarcoglycan alpha [Source:Xenbase;Acc:XB-GENE-6258370])

HSP 1 Score: 109.383 bits (272), Expect = 3.012e-26
Identity = 59/195 (30.26%), Postives = 111/195 (56.92%), Query Frame = 3 
Query:   33 MSNKFQKVKFVKLFASSEYKIRNKAYKTIKFLLKSEFGTEKKQLSENDIIAMWKGLYVWLYMQDKPIYHEEIVEKIANLFPTIVSETTALQFMKAFFLTMIREWCKIDIYRLDKYYMMVREVLNACLKWLEAKNW--AHLTEWCAILKETVLTPSEAKGIGMKLHFVDIILDELVKAGVRSDAVTKLTIEMILSM 611
            M+++   V   +  A ++ K R++A + ++  L+    ++    +E + I +WKGL+  ++MQDKP+  E + + ++ L  T+ ++ +   F++ F+ T+ REW  ID  RLDK+Y ++R VL   ++ L+   W  + + E+ A+L E VL   +   +G++LH +DI L+E+ K G       +LT EM L +
Sbjct:    4 MASQDAAVLLAQRLAGNDKKTRDRALRKLRNYLRVRSASDSGGFTEEEFIKIWKGLFYCMWMQDKPLLQEALAQSMSQLVHTLHTQESQNLFLRTFWQTLSREWNGIDRLRLDKFYTLMRMVLRESVELLKKAEWEESSVQEFLALLNEEVL---KGATLGVQLHLIDIYLEEVAKVG-----AAELTAEMNLKL 190
[Close]
BLAST of Ribosomal RNA processing 1-like protein vs. Ensembl Xenopus
Match: sgca (sarcoglycan alpha [Source:Xenbase;Acc:XB-GENE-6258370])

HSP 1 Score: 107.842 bits (268), Expect = 7.195e-26
Identity = 58/188 (30.85%), Postives = 107/188 (56.91%), Query Frame = 3 
Query:   54 VKFVKLFASSEYKIRNKAYKTIKFLLKSEFGTEKKQLSENDIIAMWKGLYVWLYMQDKPIYHEEIVEKIANLFPTIVSETTALQFMKAFFLTMIREWCKIDIYRLDKYYMMVREVLNACLKWLEAKNW--AHLTEWCAILKETVLTPSEAKGIGMKLHFVDIILDELVKAGVRSDAVTKLTIEMILSM 611
            V   +  A ++ K R++A + ++  L+    ++    +E + I +WKGL+  ++MQDKP+  E + + ++ L  T+ ++ +   F++ F+ T+ REW  ID  RLDK+Y ++R VL   ++ L+   W  + + E+ A+L E VL   +   +G++LH +DI L+E+ K G       +LT EM L +
Sbjct:    7 VLLAQRLAGNDKKTRDRALRKLRNYLRVRSASDSGGFTEEEFIKIWKGLFYCMWMQDKPLLQEALAQSMSQLVHTLHTQESQNLFLRTFWQTLSREWNGIDRLRLDKFYTLMRMVLRESVELLKKAEWEESSVQEFLALLNEEVL---KGATLGVQLHLIDIYLEEVAKVG-----AAELTAEMNLKL 186
[Close]
BLAST of Ribosomal RNA processing 1-like protein vs. Ensembl Xenopus
Match: sgca (sarcoglycan alpha [Source:Xenbase;Acc:XB-GENE-6258370])

HSP 1 Score: 110.538 bits (275), Expect = 1.421e-25
Identity = 59/195 (30.26%), Postives = 111/195 (56.92%), Query Frame = 3 
Query:   33 MSNKFQKVKFVKLFASSEYKIRNKAYKTIKFLLKSEFGTEKKQLSENDIIAMWKGLYVWLYMQDKPIYHEEIVEKIANLFPTIVSETTALQFMKAFFLTMIREWCKIDIYRLDKYYMMVREVLNACLKWLEAKNW--AHLTEWCAILKETVLTPSEAKGIGMKLHFVDIILDELVKAGVRSDAVTKLTIEMILSM 611
            M+++   V   +  A ++ K R++A + ++  L+    ++    +E + I +WKGL+  ++MQDKP+  E + + ++ L  T+ ++ +   F++ F+ T+ REW  ID  RLDK+Y ++R VL   ++ L+   W  + + E+ A+L E VL   +   +G++LH +DI L+E+ K G       +LT EM L +
Sbjct:    1 MASQDAAVLLAQRLAGNDKKTRDRALRKLRNYLRVRSASDSGGFTEEEFIKIWKGLFYCMWMQDKPLLQEALAQSMSQLVHTLHTQESQNLFLRTFWQTLSREWNGIDRLRLDKFYTLMRMVLRESVELLKKAEWEESSVQEFLALLNEEVL---KGATLGVQLHLIDIYLEEVAKVG-----AAELTAEMNLKL 187
[Close]
BLAST of Ribosomal RNA processing 1-like protein vs. Ensembl Mouse
Match: Rrp1 (ribosomal RNA processing 1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1203500])

HSP 1 Score: 112.464 bits (280), Expect = 1.396e-26
Identity = 57/172 (33.14%), Postives = 98/172 (56.98%), Query Frame = 3 
Query:   54 VKFVKLFASSEYKIRNKAYKTIKFLLKSEFGTEKKQLSENDIIAMWKGLYVWLYMQDKPIYHEEIVEKIANLFPTIVSETTALQFMKAFFLTMIREWCKIDIYRLDKYYMMVREVLNACLKWLEAKNW--AHLTEWCAILKETVLTPSEAKGIGMKLHFVDIILDELVKAGV 563
            ++  +  A +E   R++A + ++  +++         + ++++ +WKGL+  ++MQDKP+  EE+   IA L     +     QF+KAF+ TMIREW  ID  RLDK+YM++R VL+  LK ++A+ W    + +   +L   +L P      G+K HF++I L+EL K G 
Sbjct:   11 IQLAQRLAGNEQVTRDRALRKLRKYIEARSQRATGGFTPDELLKVWKGLFYCMWMQDKPLQQEELGRTIAQLVHAFHTTEAQHQFLKAFWQTMIREWVGIDRLRLDKFYMLMRMVLSESLKAVKARGWDERQIEQLLELLTTEILNPDSQAPSGVKSHFLEIFLEELAKVGA 182
[Close]
BLAST of Ribosomal RNA processing 1-like protein vs. Ensembl Mouse
Match: Rrp1b (ribosomal RNA processing 1 homolog B (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1919712])

HSP 1 Score: 109.768 bits (273), Expect = 2.628e-25
Identity = 64/221 (28.96%), Postives = 121/221 (54.75%), Query Frame = 3 
Query:   30 LMSNKFQKVKFVKLFASSEYKIRNKAYKTIKFLLKSEFGTEKKQLSENDIIAMWKGLYVWLYMQDKPIYHEEIVEKIANLFPTIVSETTALQFMKAFFLTMIREWCKIDIYRLDKYYMMVREVLNACLKWLEAKNW--AHLTEWCAILKETVLTPSEAKGIGMKLHFVDIILDELVKAG---VRSDAVTKLTIEMILSMSSVNQQHIYVSKMNKRVIDRLV 677
            + S++FQ   F +  ASSE  +R++A + ++  L +   ++    S+ +++ +WKGL+  +++QD+P+  EE+   I+ L   + S      F++ F+ TM REW  ID  +LDKYYM++R VL    + L+   W  + +T +  IL + +L+P      G++ H +D+ L+EL   G   + +D   KL I+    +++  + H  V  + + V + +V
Sbjct:    5 MQSSEFQ---FAQRLASSEKGVRDRAVRKLRQYLSARTQSDTGSFSQEELLKIWKGLFYCMWVQDEPLLQEELANIISQLIHVVNSLEAQYLFIQTFWQTMNREWQGIDKLQLDKYYMLIRLVLRQSFEVLKRNAWEESQITLFLDILMKEILSPESQSPNGVRTHLIDVYLEELTTVGGAELLADQNLKL-IDPFCRIAAKTKDHTLVQTVARGVFEVIV 221
[Close]
BLAST of Ribosomal RNA processing 1-like protein vs. Ensembl Mouse
Match: Rrp1b (ribosomal RNA processing 1 homolog B (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1919712])

HSP 1 Score: 49.2914 bits (116), Expect = 5.025e-7
Identity = 25/72 (34.72%), Postives = 41/72 (56.94%), Query Frame = 3 
Query:  351 IDIYRLDKYYMMVREVLNACLKWLEAKNW--AHLTEWCAILKETVLTPSEAKGIGMKLHFVDIILDELVKAG 560
            ID  +LDKYYM++R VL    + L+   W  + +T +  IL + +L+P      G++ H +D+ L+EL   G
Sbjct:    2 IDKLQLDKYYMLIRLVLRQSFEVLKRNAWEESQITLFLDILMKEILSPESQSPNGVRTHLIDVYLEELTTVG 73
[Close]
BLAST of Ribosomal RNA processing 1-like protein vs. Ensembl Mouse
Match: Rrp1b (ribosomal RNA processing 1 homolog B (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1919712])

HSP 1 Score: 45.8246 bits (107), Expect = 7.515e-6
Identity = 19/68 (27.94%), Postives = 43/68 (63.24%), Query Frame = 3 
Query:   30 LMSNKFQKVKFVKLFASSEYKIRNKAYKTIKFLLKSEFGTEKKQLSENDIIAMWKGLYVWLYMQDKPI 233
            + S++FQ   F +  ASSE  +R++A + ++  L +   ++    S+ +++ +WKGL+  +++QD+P+
Sbjct:    5 MQSSEFQ---FAQRLASSEKGVRDRAVRKLRQYLSARTQSDTGSFSQEELLKIWKGLFYCMWVQDEPL 69
[Close]
BLAST of Ribosomal RNA processing 1-like protein vs. Ensembl Mouse
Match: Rrp1b (ribosomal RNA processing 1 homolog B (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1919712])

HSP 1 Score: 45.8246 bits (107), Expect = 7.515e-6
Identity = 19/68 (27.94%), Postives = 43/68 (63.24%), Query Frame = 3 
Query:   30 LMSNKFQKVKFVKLFASSEYKIRNKAYKTIKFLLKSEFGTEKKQLSENDIIAMWKGLYVWLYMQDKPI 233
            + S++FQ   F +  ASSE  +R++A + ++  L +   ++    S+ +++ +WKGL+  +++QD+P+
Sbjct:    5 MQSSEFQ---FAQRLASSEKGVRDRAVRKLRQYLSARTQSDTGSFSQEELLKIWKGLFYCMWVQDEPL 69
[Close]
BLAST of Ribosomal RNA processing 1-like protein vs. UniProt/SwissProt
Match: sp|Q14684|RRP1B_HUMAN (Ribosomal RNA processing protein 1 homolog B OS=Homo sapiens OX=9606 GN=RRP1B PE=1 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 2.814e-27
Identity = 66/213 (30.99%), Postives = 115/213 (53.99%), Query Frame = 3 
Query:   54 VKFVKLFASSEYKIRNKAYKTIKFLLKSEFGTEKKQLSENDIIAMWKGLYVWLYMQDKPIYHEEIVEKIANLFPTIVSETTALQFMKAFFLTMIREWCKIDIYRLDKYYMMVREVLNACLKWLEAKNW--AHLTEWCAILKETVLTPSEAKGIGMKLHFVDIILDELVKAGVR---SDAVTKLTIEMILSMSSVNQQHIYVSKMNKRVIDRLV 677
            ++F +  ASSE  IR++A K ++  +  +   E    S+ +++ +WKGL+  +++QD+P+  EE+   IA L   + +      F++ F+ TM REW  ID  RLDKYYM++R VL    + L+   W  + +  +  +L + VL P      G++ HF+DI LDEL K G +   +D   K  I+    +++  + H  V  + + V + +V
Sbjct:   10 IQFAQRLASSEKGIRDRAVKKLRQYISVKTQRETGGFSQEELLKIWKGLFYCMWVQDEPLLQEELANTIAQLVHAVNNSAAQHLFIQTFWQTMNREWKGIDRLRLDKYYMLIRLVLRQSFEVLKRNGWEESRIKVFLDVLMKEVLCPESQSPNGVRFHFIDIYLDELSKVGGKELLADQNLKF-IDPFCKIAAKTKDHTLVQTIARGVFEAIV 221
[Close]
BLAST of Ribosomal RNA processing 1-like protein vs. UniProt/SwissProt
Match: sp|P56183|RRP1_MOUSE (Ribosomal RNA processing protein 1 homolog A OS=Mus musculus OX=10090 GN=Rrp1 PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 9.763e-26
Identity = 57/172 (33.14%), Postives = 98/172 (56.98%), Query Frame = 3 
Query:   54 VKFVKLFASSEYKIRNKAYKTIKFLLKSEFGTEKKQLSENDIIAMWKGLYVWLYMQDKPIYHEEIVEKIANLFPTIVSETTALQFMKAFFLTMIREWCKIDIYRLDKYYMMVREVLNACLKWLEAKNW--AHLTEWCAILKETVLTPSEAKGIGMKLHFVDIILDELVKAGV 563
            ++  +  A +E   R++A + ++  +++         + ++++ +WKGL+  ++MQDKP+  EE+   IA L     +     QF+KAF+ TMIREW  ID  RLDK+YM++R VL+  LK ++A+ W    + +   +L   +L P      G+K HF++I L+EL K G 
Sbjct:   11 IQLAQRLAGNEQVTRDRALRKLRKYIEARSQRATGGFTPDELLKVWKGLFYCMWMQDKPLQQEELGRTIAQLVHAFHTTEAQHQFLKAFWQTMIREWVGIDRLRLDKFYMLMRMVLSESLKAVKARGWDERQIEQLLELLTTEILNPDSQAPSGVKSHFLEIFLEELAKVGA 182
[Close]
BLAST of Ribosomal RNA processing 1-like protein vs. UniProt/SwissProt
Match: sp|Q91YK2|RRP1B_MOUSE (Ribosomal RNA processing protein 1 homolog B OS=Mus musculus OX=10090 GN=Rrp1b PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.838e-24
Identity = 64/221 (28.96%), Postives = 121/221 (54.75%), Query Frame = 3 
Query:   30 LMSNKFQKVKFVKLFASSEYKIRNKAYKTIKFLLKSEFGTEKKQLSENDIIAMWKGLYVWLYMQDKPIYHEEIVEKIANLFPTIVSETTALQFMKAFFLTMIREWCKIDIYRLDKYYMMVREVLNACLKWLEAKNW--AHLTEWCAILKETVLTPSEAKGIGMKLHFVDIILDELVKAG---VRSDAVTKLTIEMILSMSSVNQQHIYVSKMNKRVIDRLV 677
            + S++FQ   F +  ASSE  +R++A + ++  L +   ++    S+ +++ +WKGL+  +++QD+P+  EE+   I+ L   + S      F++ F+ TM REW  ID  +LDKYYM++R VL    + L+   W  + +T +  IL + +L+P      G++ H +D+ L+EL   G   + +D   KL I+    +++  + H  V  + + V + +V
Sbjct:    5 MQSSEFQ---FAQRLASSEKGVRDRAVRKLRQYLSARTQSDTGSFSQEELLKIWKGLFYCMWVQDEPLLQEELANIISQLIHVVNSLEAQYLFIQTFWQTMNREWQGIDKLQLDKYYMLIRLVLRQSFEVLKRNAWEESQITLFLDILMKEILSPESQSPNGVRTHLIDVYLEELTTVGGAELLADQNLKL-IDPFCRIAAKTKDHTLVQTVARGVFEVIV 221
[Close]
BLAST of Ribosomal RNA processing 1-like protein vs. UniProt/SwissProt
Match: sp|P56182|RRP1_HUMAN (Ribosomal RNA processing protein 1 homolog A OS=Homo sapiens OX=9606 GN=RRP1 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.549e-22
Identity = 53/173 (30.64%), Postives = 91/173 (52.60%), Query Frame = 3 
Query:   51 KVKFVKLFASSEYKIRNKAYKTIKFLLKSEFGTEKKQLSENDIIAMWKGLYVWLYMQDKPIYHEEIVEKIANLFPTIVSETTALQFMKAFFLTMIREWCKIDIYRLDKYYMMVREVLNACLKWLEAKNWAHLTEWCAILKETVLT--PSEAKGIGMKLHFVDIILDELVKAGV 563
            +++  +  A +E   R++A + ++  + +         + ++++ +WKGL+  ++MQDKP+  EE+   I+ L     +      F++AF+ TM REW  ID  RLDK+YM++R VLN  LK L+ + W        +         PS     G+K HF++I L+EL K G 
Sbjct:   10 EIQLAQRLAGNEQVTRDRAVRKLRKYIVARTQRAAGGFTHDELLKVWKGLFYCMWMQDKPLLQEELGRTISQLVHAFQTTEAQHLFLQAFWQTMNREWTGIDRLRLDKFYMLMRMVLNESLKVLKMQGWEERQIEELLELLMTEILHPSSQAPNGVKSHFIEIFLEELTKVGA 182
[Close]
BLAST of Ribosomal RNA processing 1-like protein vs. UniProt/SwissProt
Match: sp|Q9VJZ7|RRP1L_DROME (Ribosomal RNA processing protein 1 homolog OS=Drosophila melanogaster OX=7227 GN=Nnp-1 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.239e-22
Identity = 55/189 (29.10%), Postives = 107/189 (56.61%), Query Frame = 3 
Query:   48 QKVKFVKLFASSEYKIRNKAYKTIKFLLKSEFGTEKKQLSENDIIAMWKGLYVWLYMQDKPIYHEEIVEKIANLFPTIVSETT-ALQFMKAFFLTMIREWCKIDIYRLDKYYMMVREVLNACLKWLEAKNWAH--LTEWCAILKETVLTPSEAKGIGMKLHFVDIILDELVKAGVRSDAVTKLTIEMIL 605
            Q+VK ++  A ++   RN+  + ++   K+  G+     +E+D + +WKGLY  ++M DKP+  EE+ EK+A +  +    T  +L +  AF  TM +E+  ID +R+DK+ M+ R ++   L++L+  NW    +  + + ++ +V++  + K  GM +H++D+  +EL KA   +  +T   + M L
Sbjct:   39 QEVKIIRALACNDVVERNRQIRILRKWFKARAGSSFP-FNEDDFMRIWKGLYYTMWMSDKPLVQEELAEKLAQMVDSFGGNTACSLAYFSAFMRTMCQEYFGIDQWRMDKFLMLTRRMVRYLLRFLKQNNWNADLIAAFNSSMQLSVMS-EQPKSRGMTMHYLDVFFEELAKAA--NGEITAAQVNMFL 223
[Close]
BLAST of Ribosomal RNA processing 1-like protein vs. TrEMBL
Match: V4B3P0 (Uncharacterized protein OS=Lottia gigantea OX=225164 GN=LOTGIDRAFT_157138 PE=4 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.034e-31
Identity = 91/287 (31.71%), Postives = 151/287 (52.61%), Query Frame = 3 
Query:   60 FVKLFASSEYKIRNKAYKTIKFLLKSEFGTEKKQLSENDIIAMWKGLYVWLYMQDKPIYHEEIVEKIANLFPTIVSETTALQFMKAFFLTMIREWCKIDIYRLDKYYMMVREVLNACLKWLEAKNW--AHLTEWCAILKETVLTPSEAK-GIGMKLHFVDIILDELVKAGVRSDAVTKLT--IEMILSMSSVNQQHIYVSKMNKRVIDRLV--------SMERLQIDLNAVGETVWQAAANGNLQMKGK--MRKLLYKLAQRLKSIKSNVESEEPMDTDEAVASEEP 875
            FV+  AS+E +IR+KA K I+  L       KK+ S  D + +WKGL+  L+MQDKP+  EE+V+KI +L  ++ +      FMK F +T  REW  +D +RLDK+ M++R  L   L++++ +NW  + +   CA+LKETVL PS+ K   G + +F  I L+EL   G++  +  KL   +E   +    + Q   V  + K++++ +V        +++  Q+   AV E + +   N    +K     R+L Y   +R++           +DT  A+   EP
Sbjct:   10 FVQRLASNERRIRDKAIKKIRKYLHVR-SKSKKEFSAEDFLKIWKGLHFCLWMQDKPLIQEELVDKITSLILSLSTPDQVFLFMKVFLVTESREWLTLDKWRLDKFMMLIRRNLREMLRYVQNRNWNKSSIDNLCAVLKETVLNPSDVKVPFGFRAYFNLIFLEELFLTGLKKVSSLKLCEILEPFFNFLYQSTQKEVVLDIIKKIVNPIVINAKKLFCTVQSSQLQAIAVCEIIEEKLFNFGKDVKCNSWQRRLFYDQVKRIRDF---------IDTTVALKIPEP 286
[Close]
BLAST of Ribosomal RNA processing 1-like protein vs. TrEMBL
Match: A0A3R7MR06 (Putative ribosomal RNA processing protein 1-like OS=Penaeus vannamei OX=6689 GN=C7M84_023173 PE=4 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.831e-29
Identity = 74/218 (33.94%), Postives = 124/218 (56.88%), Query Frame = 3 
Query:   48 QKVKFVKLFASSEYKIRNKAYKTIKFLLKSEFGTEKKQLSENDIIAMWKGLYVWLYMQDKPIYHEEIVEKIANLFPTIVSETTALQFMKAFFLTMIREWCKIDIYRLDKYYMMVREVLNACLKWLEAKNW--AHLTEWCAILKETVLTPSEAKGI---GMKLHFVDIILDELVKAGVRSDAVTKLTIEMI---LSMSSVNQQHIYVSKMNKRVIDRLV 677
            Q+  F +  A +E K R++A KT++    ++   +K+  S ++++ +WKGL+  +YM DKP+  E++ E I+ L     +      F K  FLT+ REW  IDI+R+DK+ M VR +L   L  L   NW    ++E   I++ T+L P + K I   G+KLH  DIIL+EL K G R D   K  +E++   L + ++ +   Y  ++++R+I +L+
Sbjct:    2 QETLFAQKLADNEKKNRDRAIKTLRKYFAAKSTAKKRGFSHDEMMKIWKGLFYCMYMADKPLIQEDLAESISALIHRFGNVEDRQNFAKCAFLTLAREWNNIDIFRMDKFMMFVRRILRQILVQLNLCNWNINRVSEIANIIETTILVPDDHKHITPLGLKLHLSDIILEELAKIG-REDIRNKALLEILKPFLKVLALTKDKRYFERVSERIIRQLM 218
[Close]
BLAST of Ribosomal RNA processing 1-like protein vs. TrEMBL
Match: A0A2V1EG41 (Uncharacterized protein OS=Periconia macrospinosa OX=97972 GN=DM02DRAFT_722711 PE=4 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.470e-29
Identity = 62/177 (35.03%), Postives = 108/177 (61.02%), Query Frame = 3 
Query:   33 MSNKFQKVKFVKLFASSEYKIRNKAYKTIKFLLKSEFGTEKKQLSENDIIAMWKGLYVWLYMQDKPIYHEEIVEKIANLFPTIVSETTALQFMKAFFLTMIREWCKIDIYRLDKYYMMVREVLNACLKWLEAKNWAH--LTEWCAILKETVLTPSEAK-GIGMKLHFVDIILDELVK 554
            M+ + Q   F+K  ASS+ + R++A  +++  L ++      Q+SE D++ +WKGL+  L+MQDKP     +   +A+L P+ +  T  L F++AF++T+ REW  I+  R+DKY  ++R+ +NA  KWL +  W    + +W  +++ET L P + K   G++ H +D++LDEL K
Sbjct:    1 MATEAQNSPFIKNLASSDKRTRDQALNSLRAYLSAQ-----TQISELDLLKLWKGLFYCLWMQDKPHLQNRLSTDLASL-PSTLRPTVVLPFLRAFYITIAREWVNIEALRMDKYLFLIRQYVNASFKWLASTKWDQDLVRQWNHMVEETPLHPKDMKVPNGLRYHVLDVLLDELEK 171
[Close]
BLAST of Ribosomal RNA processing 1-like protein vs. TrEMBL
Match: A0A1S3HVX1 (ribosomal RNA processing protein 1 homolog A isoform X4 OS=Lingula unguis OX=7574 GN=LOC106158661 PE=4 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.823e-29
Identity = 84/317 (26.50%), Postives = 154/317 (48.58%), Query Frame = 3 
Query:   54 VKFVKLFASSEYKIRNKAYKTIKFLLKSEFGTEKKQLSENDIIAMWKGLYVWLYMQDKPIYHEEIVEKIANLFPTIVSETTALQFMKAFFLTMIREWCKIDIYRLDKYYMMVREVLNACLKWLEAKNW--AHLTEWCAILKETVLTPSEAKGI-GMKLHFVDIILDELVKAGVRS--DAVTKLTIEMILSMSSVNQQHIYVSKMNKRVIDRLVSME--------------------------RLQIDLNAVGETVWQAAANGNLQMKGKMRKLLYKLAQRLKSIKSNVESEEPMDTDEAVAS---EEPAVDTTVEMA 902
            V F +  A++E KIR++A K ++  +     ++    SE+D++ +WKGL+  ++M DKP+  E++ + +ANL     +   A  F++AFF T  REW  ID  RLDK+ M++R V++ CL  L+ K W    + ++ +IL++ V++  ++ G  G+K H  DI LDEL   G+ S    + ++ +E   +M +  Q    VS +  R+   ++                             +LQ D  A+ + ++  A   N   +   R  +Y L +R K + + +       +D+ + S   ++P  +    MA
Sbjct:   12 VYFAQKLAANENKIRDRAVKKLRKYISVR--SQSVGFSEDDMLKIWKGLHYCMWMCDKPLVQEDLADTLANLLQCFDNNAQAFLFIEAFFQTQCREWFGIDRLRLDKFMMLIRRVIHQCLLMLKIKKWKVTLVKQFLSILEKYVISDGDSAGPDGLKFHLADIYLDELSSVGIDSLKPDILQIFLEPYCTMMTRCQNKHLVSHVVNRIFKNIIDQSDVGKDEEEDDSEDEDEEENQDADKAPKLQFDYTAIADKLFDLAKGNNCLSRN--RPAIYDLVKRFKDLAAGI-----FPSDDIIGSSDEDDPISNADFNMA 319
[Close]
BLAST of Ribosomal RNA processing 1-like protein vs. TrEMBL
Match: A0A1S3HXA5 (ribosomal RNA processing protein 1 homolog A isoform X3 OS=Lingula unguis OX=7574 GN=LOC106158661 PE=4 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 8.402e-29
Identity = 85/317 (26.81%), Postives = 153/317 (48.26%), Query Frame = 3 
Query:   54 VKFVKLFASSEYKIRNKAYKTIKFLLKSEFGTEKKQLSENDIIAMWKGLYVWLYMQDKPIYHEEIVEKIANLFPTIVSETTALQFMKAFFLTMIREWCKIDIYRLDKYYMMVREVLNACLKWLEAKNW--AHLTEWCAILKETVLTPSEAKGI-GMKLHFVDIILDELVKAGVRS--DAVTKLTIEMILSMSSVNQQHIYVSKMNKRVIDRLVSME--------------------------RLQIDLNAVGETVWQAAANGNLQMKGKMRKLLYKLAQRLKSIKSNVESEEPMDTDEAVAS---EEPAVDTTVEMA 902
            V F +  A++E KIR++A K ++  +     ++    SE+D++ +WKGL+  ++M DKP+  E++ + ++NL     +   A  F+ AFF T  REW  ID  RLDK+ M++R V++ CL  L+ K W    + ++ +IL++ V++ S+  G  G+K H  DI LDEL   G+ S    V ++ +E   +M +  Q    VS +  R+   ++                             +LQ D  A+ + ++  A   N   +   R  +Y L +R K + + +       +D+ + S   ++P  +    MA
Sbjct:   12 VYFAQKLAANEKKIRDRAVKKLRKYISVR--SQSVGFSEDDMLKIWKGLHYCMWMCDKPLVQEDLADTLSNLLQCFDNNAQAFLFIDAFFQTQCREWFGIDRLRLDKFMMLIRRVIHQCLLMLKIKKWKVTLVKQFLSILEKYVISDSDNAGPDGLKFHLADIYLDELSSVGIDSLKPDVLQIFLEPYCTMMTRCQNKHLVSHVVNRIFKNIIDQSDVGKDEEEDVSEDEGEEENQDTDKAPKLQFDYTAIADKLFDLAKGNNCLSRN--RPAIYDLVKRFKDLAAGI-----FPSDDIIGSSDEDDPISNADFNMA 319
[Close]
BLAST of Ribosomal RNA processing 1-like protein vs. Ensembl Cavefish
Match: ENSAMXT00000046750.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02002032.1:95930:119230:-1 gene:ENSAMXG00000043138.1 transcript:ENSAMXT00000046750.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 80.8777 bits (198), Expect = 4.908e-16
Identity = 47/142 (33.10%), Postives = 76/142 (53.52%), Query Frame = 3 
Query:   51 KVKFVKLFASSEYKIRNKAYKTIK--FLLKSEFGTEKKQLSENDIIAMWKGLYVWLYMQDKPIYHEEIVEKIANLFPTIVSETTALQFMKAFFLTMIREWCKIDIYRLDKYYMMVREVLNACLKWLEAKNWAH-LTEWCAIL 467
            +V   +  AS+E  +R +A KT+K    L+S+ G        +D++ +WKGL+  L+MQDKP   EE+ ++++ L  +  +    L + + F  TM REW  ID  R+DK++ +VR V     + L+ K  A  L   C  L
Sbjct:    7 EVAVAQRLASNERPVRTRALKTLKKYINLRSQTGG----FCRDDLLKIWKGLFYSLWMQDKPDLQEELSDRVSLLIHSFHTFNNQLLYFETFLQTMKREWNGIDRLRMDKFFQLVRFVFRQVFEVLKRKAHASVLFSLCCFL 144
[Close]
BLAST of Ribosomal RNA processing 1-like protein vs. Ensembl Yeast
Match: RRP1 (Essential evolutionarily conserved nucleolar protein; necessary for biogenesis of 60S ribosomal subunits and for processing of pre-rRNAs to mature rRNA; associated with several distinct 66S pre-ribosomal particles [Source:SGD;Acc:S000002494])

HSP 1 Score: 82.4185 bits (202), Expect = 3.335e-18
Identity = 56/178 (31.46%), Postives = 92/178 (51.69%), Query Frame = 3 
Query:   60 FVKLFASSEYKIRNKAYKTIKFLLKSEFGTEKKQLSENDIIAMWKGLYVWLYMQDKPIYHEEIVEKIANLFP--------TIVSETTA-----LQFMKAFFLTMIREWCKIDIYRLDKYYMMVREVLNACLKWLEAKNWAH--LTEWC-AILKETVLTPSEAKGIGMKLHFVDIILDE 545
            FVK  +S+  K R  A + +K  L ++   E KQ+  N    +WKGLY  ++  D+P   + +  ++  L          +   E T      ++F + F+  M  EW  ID YRLDKY +++R VL + LK+L+++NW    + E+   +L+   L+ S     G+ +H VDI+LDE
Sbjct:    6 FVKQLSSNNRKTRVNALEALKKYLTAKQFKENKQIEFN---KLWKGLYYAMWFSDRPRPQQRLANELGELHGLYFDPKDNSTADELTTNDKAFIKFSRGFWKVMCFEWFNIDRYRLDKYLLLIRRVLFSQLKYLQSRNWDKKLVDEYIKKVLRWLPLSGSPKVYTGIPIHIVDILLDE 180
[Close]
BLAST of Ribosomal RNA processing 1-like protein vs. Ensembl Nematostella
Match: EDO46082 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RR02])

HSP 1 Score: 115.161 bits (287), Expect = 8.165e-28
Identity = 80/291 (27.49%), Postives = 146/291 (50.17%), Query Frame = 3 
Query:   60 FVKLFASSEYKIRNKAYKTIKFLLKSEFGTEKKQ----LSENDIIAMWKGLYVWLYMQDKPIYHEEIVEKIANLFPTIVSETTALQFMKAFFLTMIREWCKIDIYRLDKYYMMVREVLNACLKWLEAKNW--AHLTEWCAILKETVLTPSEAK-GIGMKLHFVDIILDELVKAGVRSDAVTKLTIEMI---LSMSSVNQQHIYVSKMNKRVIDRLVSMER-----------------LQIDLNAVGETVWQAAANGNLQMKGKMRKLLYKLAQRLKSIKSNVESEEPMDTD 851
            F K  A ++ +IR++  + ++  + S     +KQ      E D++ +WKGL+   +M DKP+  EE+   I++L  +  ++ +AL F+  FF TM REW  ID  R+DK+YM+VR ++      +    W  +     CA LKE  L P+  K  +GM+LH   I LDEL K         K+T++++   L++++  +  +  S +   V+D + S ++                 L+ID  A+ + ++  A+  + ++  + R +LY   +R K +KS    +  ++ D
Sbjct:   10 FAKKLAHNDKRIRDRTVRRLQAWIAS-----RKQDGVGFKERDLLKIWKGLFYCFWMSDKPLVQEELASSISSLIHSFRNKDSALLFLVTFFKTMHREWHGIDRLRMDKFYMLVRMMVKQMFVMMIKNKWEPSLCDRVCANLKEGPLHPTAEKVPVGMRLHLASIYLDEL-KNTSECQVPEKMTLKLLEPFLNLAAFTKNQVIFSAVKTGVLDSIYSSQQNIKTNTENNNDEAEEKDLEIDCLALADKLFAVAS--DREVLSRNRHVLYSFVKRFKKLKSGHTGQPNLNVD 292
[Close]
BLAST of Ribosomal RNA processing 1-like protein vs. Ensembl Medaka
Match: ENSORLT00000034609.1 (ribosomal RNA processing protein 1 homolog A [Source:NCBI gene;Acc:101171651])

HSP 1 Score: 98.9821 bits (245), Expect = 6.885e-22
Identity = 51/179 (28.49%), Postives = 95/179 (53.07%), Query Frame = 3 
Query:   30 LMSNKFQKVKFVKLFASSEYKIRNKAYKTIKFLLKSEFGTEKKQLSENDIIAMWKGLYVWLYMQDKPIYHEEIVEKIANLFPTIVSETTALQFMKAFFLTMIREWCKIDIYRLDKYYMMVREVLNACLKWLEAKNWAH--LTEWCAILKETVLTPSEAKGIGMKLHFVDIILDELVKAG 560
            + S++  +V+  +  AS+E  +R +A + +K  + +  G      S  +++ +WKGL+  L+MQDKP+  EE+  +I+NL  +       L F ++F  TM REW  ID  R+DK++ ++R +     + L+  +W    +T +  +L   +L        G++LH +++ L EL   G
Sbjct:    3 MASSQQPEVQLAQRLASNEKPVRTRALRKLKKYISAREGAAGG-FSAEELLKLWKGLFYCLWMQDKPLLQEELSSQISNLVHSFPHTDKQLLFFQSFLQTMKREWTGIDRLRMDKFFQLIRFMFRQTFEVLKRNSWDSRAVTGFLELLGSQLLQSDSETPAGLQLHILELYLTELAAVG 180
[Close]
BLAST of Ribosomal RNA processing 1-like protein vs. Ensembl Medaka
Match: ENSORLT00000025812.2 (ribosomal RNA processing protein 1 homolog A [Source:NCBI gene;Acc:101171651])

HSP 1 Score: 97.4413 bits (241), Expect = 8.494e-22
Identity = 51/179 (28.49%), Postives = 95/179 (53.07%), Query Frame = 3 
Query:   30 LMSNKFQKVKFVKLFASSEYKIRNKAYKTIKFLLKSEFGTEKKQLSENDIIAMWKGLYVWLYMQDKPIYHEEIVEKIANLFPTIVSETTALQFMKAFFLTMIREWCKIDIYRLDKYYMMVREVLNACLKWLEAKNWAH--LTEWCAILKETVLTPSEAKGIGMKLHFVDIILDELVKAG 560
            + S++  +V+  +  AS+E  +R +A + +K  + +  G      S  +++ +WKGL+  L+MQDKP+  EE+  +I+NL  +       L F ++F  TM REW  ID  R+DK++ ++R +     + L+  +W    +T +  +L   +L        G++LH +++ L EL   G
Sbjct:    2 MASSQQPEVQLAQRLASNEKPVRTRALRKLKKYISAREGAAGG-FSAEELLKLWKGLFYCLWMQDKPLLQEELSSQISNLVHSFPHTDKQLLFFQSFLQTMKREWTGIDRLRMDKFFQLIRFMFRQTFEVLKRNSWDSRAVTGFLELLGSQLLQSDSETPAGLQLHILELYLTELAAVG 179
[Close]
BLAST of Ribosomal RNA processing 1-like protein vs. Planmine SMEST
Match: SMESG000019865.1 (SMESG000019865.1)

HSP 1 Score: 654.825 bits (1688), Expect = 0.000e+0
Identity = 390/395 (98.73%), Postives = 393/395 (99.49%), Query Frame = 3 
Query:   33 MSNKFQKVKFVKLFASSEYKIRNKAYKTIKFLLKSEFGTEKKQLSENDIIAMWKGLYVWLYMQDKPIYHEEIVEKIANLFPTIVSETTALQFMKAFFLTMIREWCKIDIYRLDKYYMMVREVLNACLKWLEAKNWAHLTEWCAILKETVLTPSEAKGIGMKLHFVDIILDELVKAGVRSDAVTKLTIEMILSMSSVNQQHIYVSKMNKRVIDRLVSMERLQIDLNAVGETVWQAAANGNLQMKGKMRKLLYKLAQRLKSIKSNVESEEPMDTDEAVASEEPAVDTTVEMATADVPAEVLMXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLPEIXXXXXXXXXXXXXXXXXXXENDEKRVXXXXXXXXXXXXXXXSVNVSLGTVKQHQLKSILKRP 1217
            MSNKFQKVKFVKLFASSEYKIRNKAYKTIKFLLKSEFGTEKKQLSENDIIAMWKGLYVWLYMQDKPIYHEEIVEKIANLFPTIVSETTALQFMKAFFLTMIREWCKIDIYRLDKYYMMVREVLNACLKWLEAKNWAHLTEWCAILKETVLTPSEAKGIGMKLHFVDIILDELVKAGVRSDAVTKLTIEMILSMSSVNQQHIYVSKMNKRVIDRLVSMERLQIDLNAVGET+WQAAANGNL MKGKMRKLLYKLAQRLKSIKSNVE+EEPMDTDEAVASEEPAVDTTVEMATADVPAEVLMTEPAAEPEEES ETPPQTEPTQPEEEPAKLPEIVSKKKSKKPVKTKPKN+SSENDEKRVTFGKKYTKKFTKTTTSVNVSLGTVKQHQLKSILKRP
Sbjct:    1 MSNKFQKVKFVKLFASSEYKIRNKAYKTIKFLLKSEFGTEKKQLSENDIIAMWKGLYVWLYMQDKPIYHEEIVEKIANLFPTIVSETTALQFMKAFFLTMIREWCKIDIYRLDKYYMMVREVLNACLKWLEAKNWAHLTEWCAILKETVLTPSEAKGIGMKLHFVDIILDELVKAGVRSDAVTKLTIEMILSMSSVNQQHIYVSKMNKRVIDRLVSMERLQIDLNAVGETLWQAAANGNLPMKGKMRKLLYKLAQRLKSIKSNVENEEPMDTDEAVASEEPAVDTTVEMATADVPAEVLMTEPAAEPEEESTETPPQTEPTQPEEEPAKLPEIVSKKKSKKPVKTKPKNASSENDEKRVTFGKKYTKKFTKTTTSVNVSLGTVKQHQLKSILKRP 395
The following BLAST results are available for this feature:
BLAST of Ribosomal RNA processing 1-like protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 2
Match NameE-valueIdentityDescription
RRP1B5.860e-2830.99ribosomal RNA processing 1B [Source:HGNC Symbol;Ac... [more]
RRP13.225e-2330.64ribosomal RNA processing 1 [Source:HGNC Symbol;Acc... [more]
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BLAST of Ribosomal RNA processing 1-like protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rrp-11.191e-2130.41Ribosomal RNA processing protein 1 homolog [Sourc... [more]
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BLAST of Ribosomal RNA processing 1-like protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 1
Match NameE-valueIdentityDescription
Nnp-12.234e-2329.10gene:FBgn0022069 transcript:FBtr0080473[more]
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BLAST of Ribosomal RNA processing 1-like protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rrp17.849e-2129.61ribosomal RNA processing 1 [Source:ZFIN;Acc:ZDB-GE... [more]
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BLAST of Ribosomal RNA processing 1-like protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 3
Match NameE-valueIdentityDescription
sgca3.012e-2630.26sarcoglycan alpha [Source:Xenbase;Acc:XB-GENE-6258... [more]
sgca7.195e-2630.85sarcoglycan alpha [Source:Xenbase;Acc:XB-GENE-6258... [more]
sgca1.421e-2530.26sarcoglycan alpha [Source:Xenbase;Acc:XB-GENE-6258... [more]
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BLAST of Ribosomal RNA processing 1-like protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Rrp11.396e-2633.14ribosomal RNA processing 1 homolog (S. cerevisiae)... [more]
Rrp1b2.628e-2528.96ribosomal RNA processing 1 homolog B (S. cerevisia... [more]
Rrp1b5.025e-734.72ribosomal RNA processing 1 homolog B (S. cerevisia... [more]
Rrp1b7.515e-627.94ribosomal RNA processing 1 homolog B (S. cerevisia... [more]
Rrp1b7.515e-627.94ribosomal RNA processing 1 homolog B (S. cerevisia... [more]
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BLAST of Ribosomal RNA processing 1-like protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q14684|RRP1B_HUMAN2.814e-2730.99Ribosomal RNA processing protein 1 homolog B OS=Ho... [more]
sp|P56183|RRP1_MOUSE9.763e-2633.14Ribosomal RNA processing protein 1 homolog A OS=Mu... [more]
sp|Q91YK2|RRP1B_MOUSE1.838e-2428.96Ribosomal RNA processing protein 1 homolog B OS=Mu... [more]
sp|P56182|RRP1_HUMAN1.549e-2230.64Ribosomal RNA processing protein 1 homolog A OS=Ho... [more]
sp|Q9VJZ7|RRP1L_DROME2.239e-2229.10Ribosomal RNA processing protein 1 homolog OS=Dros... [more]
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BLAST of Ribosomal RNA processing 1-like protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
V4B3P01.034e-3131.71Uncharacterized protein OS=Lottia gigantea OX=2251... [more]
A0A3R7MR061.831e-2933.94Putative ribosomal RNA processing protein 1-like O... [more]
A0A2V1EG413.470e-2935.03Uncharacterized protein OS=Periconia macrospinosa ... [more]
A0A1S3HVX14.823e-2926.50ribosomal RNA processing protein 1 homolog A isofo... [more]
A0A1S3HXA58.402e-2926.81ribosomal RNA processing protein 1 homolog A isofo... [more]
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BLAST of Ribosomal RNA processing 1-like protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
ENSAMXT00000046750.14.908e-1633.10pep primary_assembly:Astyanax_mexicanus-2.0:APWO02... [more]
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BLAST of Ribosomal RNA processing 1-like protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Ribosomal RNA processing 1-like protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1
Match NameE-valueIdentityDescription
RRP13.335e-1831.46Essential evolutionarily conserved nucleolar prote... [more]
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BLAST of Ribosomal RNA processing 1-like protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO460828.165e-2827.49Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of Ribosomal RNA processing 1-like protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 2
Match NameE-valueIdentityDescription
ENSORLT00000034609.16.885e-2228.49ribosomal RNA processing protein 1 homolog A [Sour... [more]
ENSORLT00000025812.28.494e-2228.49ribosomal RNA processing protein 1 homolog A [Sour... [more]
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BLAST of Ribosomal RNA processing 1-like protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000019865.10.000e+098.73SMESG000019865.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30007399 ID=SMED30007399|Name=Ribosomal RNA processing 1-like protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1251bp
GCACTAAAAACTTTTGATTTTACCAAATACTCATGTCAAATAAATTTCAG
AAAGTAAAATTTGTGAAACTCTTTGCATCGAGTGAATACAAAATTCGTAA
TAAAGCTTATAAAACAATAAAATTTTTACTTAAATCAGAATTTGGAACAG
AAAAAAAACAACTGTCTGAAAATGATATAATCGCCATGTGGAAGGGTTTA
TATGTATGGCTATATATGCAGGACAAGCCGATTTATCACGAAGAGATTGT
AGAAAAAATTGCCAATCTTTTCCCTACAATAGTTTCAGAAACAACTGCAT
TACAATTCATGAAAGCATTTTTTCTCACAATGATTCGCGAGTGGTGTAAA
ATCGATATTTATCGCTTGGATAAATATTACATGATGGTGAGAGAGGTATT
AAATGCGTGTCTCAAGTGGCTGGAAGCAAAAAATTGGGCGCATCTCACTG
AATGGTGTGCGATTCTGAAAGAAACGGTTTTAACGCCCTCTGAAGCAAAA
GGAATCGGAATGAAGTTGCATTTCGTTGACATAATATTGGACGAGCTGGT
CAAGGCGGGCGTCAGATCGGACGCGGTGACGAAACTGACGATTGAAATGA
TCCTATCGATGAGCAGCGTGAATCAGCAGCACATTTACGTGAGCAAGATG
AACAAGCGAGTAATCGATCGATTGGTTAGCATGGAGCGTTTGCAGATCGA
CCTTAACGCGGTCGGGGAAACTGTATGGCAAGCTGCTGCCAATGGCAACC
TGCAAATGAAGGGCAAAATGCGCAAATTGCTCTACAAACTGGCACAAAGG
CTGAAATCGATCAAATCAAACGTGGAGAGCGAGGAGCCGATGGACACGGA
TGAGGCGGTAGCGAGTGAGGAGCCAGCAGTCGATACGACGGTTGAAATGG
CAACCGCTGATGTTCCTGCTGAGGTGCTGATGACAGAGCCAGCTGCTGAG
CCGGAGGAGGAATCGGCAGAAACGCCACCGCAAACTGAGCCAACGCAACC
AGAGGAGGAGCCGGCGAAATTGCCTGAAATCGTCAGCAAGAAAAAGAGCA
AAAAGCCTGTAAAAACCAAACCAAAGAATTCCAGCAGCGAGAACGACGAG
AAGCGAGTGACATTCGGCAAGAAGTACACAAAAAAATTCACCAAGACGAC
CACCTCAGTCAACGTCAGCCTCGGCACCGTCAAGCAGCACCAGCTCAAAT
CCATTCTCAAGCGGCCCTGAACAAATCACTCGAGCGCGGATTTTATCATG
C
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protein sequence of SMED30007399-orf-1

>SMED30007399-orf-1 ID=SMED30007399-orf-1|Name=SMED30007399-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=396bp
MSNKFQKVKFVKLFASSEYKIRNKAYKTIKFLLKSEFGTEKKQLSENDII
AMWKGLYVWLYMQDKPIYHEEIVEKIANLFPTIVSETTALQFMKAFFLTM
IREWCKIDIYRLDKYYMMVREVLNACLKWLEAKNWAHLTEWCAILKETVL
TPSEAKGIGMKLHFVDIILDELVKAGVRSDAVTKLTIEMILSMSSVNQQH
IYVSKMNKRVIDRLVSMERLQIDLNAVGETVWQAAANGNLQMKGKMRKLL
YKLAQRLKSIKSNVESEEPMDTDEAVASEEPAVDTTVEMATADVPAEVLM
TEPAAEPEEESAETPPQTEPTQPEEEPAKLPEIVSKKKSKKPVKTKPKNS
SSENDEKRVTFGKKYTKKFTKTTTSVNVSLGTVKQHQLKSILKRP*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000014zeta neoblast
PLANA:0000429neoblast
PLANA:0002109X1 cell
PLANA:0002111X2 cell
Vocabulary: INTERPRO
TermDefinition
IPR010301Nop52
Vocabulary: biological process
TermDefinition
GO:0006364rRNA processing
GO:0010923negative regulation of phosphatase activity
Vocabulary: cellular component
TermDefinition
GO:0030688preribosome, small subunit precursor
GO:0000791euchromatin
GO:0000792heterochromatin
GO:0005634nucleus
GO:0005730nucleolus
GO:0005829cytosol
GO:0030687preribosome, large subunit precursor
Vocabulary: molecular function
TermDefinition
GO:0003723RNA binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010301Nucleolar, Nop52PFAMPF05997Nop52coord: 9..183
e-value: 4.3E-44
score: 150.9
IPR010301Nucleolar, Nop52PANTHERPTHR13026NNP-1 PROTEIN NOVEL NUCLEAR PROTEIN 1 NOP52coord: 9..269
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 346..363
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 304..376
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 262..284
NoneNo IPR availablePANTHERPTHR13026:SF0RIBOSOMAL RNA-PROCESSING 1coord: 9..269