GCR103
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30007383 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 9
Homology
BLAST of GCR103 vs. TrEMBL
Match: A0A1I8HY28 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 3.036e-40 Identity = 109/327 (33.33%), Postives = 165/327 (50.46%), Query Frame = 3 Query: 294 YRFFVSWFVPLLIMFGEIGTLLCLIVLLKRRTGNAETRMWFIALSIADMYSLLVGLSIFYSSRIHFIFPTLFREDEAI-QFDMRQRSAFNCYFLNGLVYFGLLVSTWIQVGIXXXXXXXXXXXXPNPHSRKTKKYAI---ALGVCVTSCVIITCILIGVNIEY--------TFPKPCPLHKVCRLSIVKSRYFFYSSLTIKVLLPTIFLLACSILIINHLKKFKXXXXXXXXXXXXXXXXXXXXXXKQKYISYTLLGMNFTFFLLTLPFEVYKIHFFYRTDAIN---TKNVALIRTVDKLLNIVLYTNNATNWLFYFMLGQRFRQSM 1229 Y++ +W VPLL + G GT++C+ VLL+R + E R WFIALS+ D+ L VGL I Y + + I + +D R +A CY L L Y+GL+ S+W+QVGIS+ R LS R+ YA AL V + +++ + +++Y VC KS Y+FYS+L ++V P + L S I+ L +FK R +Q+ IS L+GMN TF L LP+E+Y I+ R + + A ++ +++ +++YTNNATNW+FYF+LG RFRQ + Sbjct: 132 YKYLFAWLVPLLYVSGCAGTIVCVTVLLRRGSTQKEARPWFIALSLTDLCVLSVGLPIMYLNIVRAIVKAELSPTATVGSYDPRSWNAPACYGLTILQYYGLIASSWVQVGISLTRCLSAVMPLA---CRRRLNYAASKRALAVTLAVPIVLAVAAVTSSVKYYERSEANNGTGGGGGSGGVCAQKW-KSPYYFYSTLVLRVFFPAVCLAVSSAGIMYSLHRFK----------RTFPTDQARLSQQQRRISIALIGMNSTFLLFALPYELYLIYATERRADLQRGGPAHAAALKIAERVFAVLMYTNNATNWIFYFVLGHRFRQEL 444
BLAST of GCR103 vs. TrEMBL
Match: A0A193KUC5 (GCR103 OS=Schmidtea mediterranea OX=79327 GN=gcr103 PE=2 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 1.149e-29 Identity = 109/330 (33.03%), Postives = 179/330 (54.24%), Query Frame = 3 Query: 285 INFYRFFVSWFVPLLIMFGEIGTLLCLIVLLKRRTGNAETRMWFIALSIADMYSLLVGLSIFYSSRIHFIFPTLFREDEAIQFDMRQRSAFNCYFLNGLVYFGLLVSTWIQVGIXXXXXXXXX--XXXPNPHSRKTKKYAIALGVCVTSCVIITCILIGVNIEYTFPKPCPLHK--VCRLSIVKSRYFFYSSLTIKVLLPTIFLLACSILIINHL------KKFKXXXXXXXXXXXXXXXXXXXXXXK-QKYISYTLLGMNFTFFLLTLPFEVYKIHFFYRTDAINT-------KNVALIRTVDKLLNIVLYTNNATNWLFYFMLGQRFR 1220 I FY + VSW VP++++FG GT +C++VL+K A+ WF+ LS D+ SL++GL+ Y ++++ I +I D R + F C+FL+ +YF L +S+W+QVGISV+R +S+ + + A+ + + +T ++ + IL+ + Y + C+LS F++ SL KV++PT+ L+ SI+I +L + F S + N+ +S +R+ + +S TLLGMN TF L LPFE++K+ R IN ++ +R +DK NI +Y N ATNW+FYF+LG+ FR Sbjct: 21 IYFYHYVVSWLVPVILLFGCSGTSICIVVLVKTAKRRAKIWSWFLVLSTNDIISLILGLTSLYLNKLYLI----TNRASSISEDFRSSNIFVCHFLSTGLYFTLFLSSWMQVGISVIRTISISCPLFIKTRFTASVARKALVIHISIT--LLFSIILVNSTLIYDEVYSGNFSRGFRCKLSNKYDDLFYFVSLVFKVIIPTLILILSSIIIWRNLSSQYDSRDFNNTDSIKFTNSDTPQHSEHSRRISINRNLSLTLLGMNLTFLLSNLPFEIFKV--INRNFNINKIKLPKDFEDFLTMRILDKSFNISVYFNQATNWMFYFLLGKSFR 342
BLAST of GCR103 vs. TrEMBL
Match: K1P9R6 (G_PROTEIN_RECEP_F1_2 domain-containing protein OS=Crassostrea gigas OX=29159 GN=CGI_10005970 PE=4 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 2.676e-9 Identity = 79/327 (24.16%), Postives = 145/327 (44.34%), Query Frame = 3 Query: 321 PLLIMFGEIGTLLCLIVLLKRRTGNAETRMWFIALSIADMYSLLVGLSIFYSSRIHFIFPTLFREDEAIQFDMRQRSAFNCYFLNGLVYFGLLVSTWIQVGIXXXXXXXXXXXXPNPHSRKTK----KYAIALGVCVTSCVIITCILI-GVNIEYTFPKPCPLHKVCRLSIVKSRYFF-----YSSLTIKVLLPTIFLLACSILIINHLKKFKXXXXXXXXXXXXXXXXXXXXXXKQKYISYTLLGMNFTFFLLTLPFEVYKIHFFYRTDAINTKNVALIRTVDKLLNIVLYTNNATNWLFYFMLGQRFRQSMVHLICQKYSISCTS 1271 P++I G +G + C++ LL++ T ++ +ALS+ D+ L GL H+I ++ D+R S +C +VY L S WI V +++ RV V PH+ K + A LGV + S ++I LI G+ + K C + FF + L +P + +L +++II + K + ++ ++ K ++ TL+ +N F L T P VY + ++ + +A + ++N+++Y+NN N+L Y + G FR+ + HL C++Y + T Sbjct: 26 PIMIALGTVGNIFCIVTLLRKNLRQQTTVIYLVALSLNDLLVLYSGL------LRHWII-------KSFDVDVRLLSELSCKLHLWVVYMSLDTSGWILVAVTIERVALVWF----PHASKARCNRTVAACILGVLIGSTMLINSHLIYGIGDVTNIENNETVVKHCYYESDSYKRFFIDIWPWIDLAKFNAIPFLLILIGNVIIITSVVK-----NHQKLRRTVVPQGTRKRMKKVNSMTATLIVLNTAFLLSTTPISVYLAFYEEWSENASHHTIARLTLSWAVVNLLMYSNNTLNFLLYCVSGGNFRKEIRHL-CKRYPAAHTE 329
BLAST of GCR103 vs. TrEMBL
Match: A0A210QZM9 (Orexin receptor type 2 OS=Mizuhopecten yessoensis OX=6573 GN=KP79_PYT15225 PE=4 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 4.156e-9 Identity = 79/313 (25.24%), Postives = 131/313 (41.85%), Query Frame = 3 Query: 321 PLLIMFGEIGTLLCLIVLLKRRTGNAETRMWFIALSIADMYSLLVGLSIFYSSRIHFIFPTLFREDEAIQFDMRQRSAFNCYFLNGLVYFGLLVSTWIQVGIXXXXXXXXXXXXPNPHSRKTKKYAIALGVCVTSCVIITCILIGVNIEYTFPKPCPLHK-----VCRLSIVKSRYFF-----YSSLTIKVLLPTIFLLACSILIINHLKKFKXXXXXXXXXXXXXXXXXXXXXXKQKYISYTLLGMNFTFFLLTLPFEVYKIHFFYRTDAINTKNVALIRTVDKLLNIVLYTNNATNWLFYFMLGQRFRQSM 1229 P +I+FG G +L + +L ++ + ++ + L+ +D+ L GL + S Q D+R ++ C LVY L S WI V ++ RV V PH K K + +T + + +LI +I Y + + +C RYFF + LTI LP FL+A ++LII K + V + + +R + +S L+ +N F L T P +Y I + + + A + L+N+++Y NN N+L Y M G RFR + Sbjct: 17 PFMIVFGTFGNILSIFILTRKNIRQSTCTVYLVVLACSDLVVLYTGLLRTWIS-------------ATFQNDIRTHTSGLCKVHTWLVYVSLDFSAWILVAVTAERVALVWF----PHKAKAKCTKKSAAFVITP-IFVCLMLINSHILYGMDRVVKVDGNSTSILCDFVTENYRYFFDELWPWVDLTIFCGLPFCFLVAGNVLIIT---KVFASQRAARRQVVPHDPNSRAQRSQMSSMSIMLICLNCVFMLCTTPVSIYLIGYIHWYRGASESIKATLSLFWTLVNVLMYANNTFNFLLYCMSGSRFRAEV 308
BLAST of GCR103 vs. Planmine SMEST
Match: SMESG000061776.1 (SMESG000061776.1) HSP 1 Score: 792.727 bits (2046), Expect = 0.000e+0 Identity = 440/441 (99.77%), Postives = 440/441 (99.77%), Query Frame = 3 Query: 156 MDNGLPQTFEIFGNNSAKYVNAVLVYCSKQMDLVNEGNNFQIYINFYRFFVSWFVPLLIMFGEIGTLLCLIVLLKRRTGNAETRMWFIALSIADMYSLLVGLSIFYSSRIHFIFPTLFREDEAIQFDMRQRSAFNCYFLNGLVYFGLLVSTWIQVGIXXXXXXXXXXXXPNPHSRKTKKYAIALGVCVTSCVIITCILIGVNIEYTFPKPCPLHKVCRLSIVKSRYFFYSSLTIKVLLPTIFLLACSILIINHLKKFKXXXXXXXXXXXXXXXXXXXXXXKQKYISYTLLGMNFTFFLLTLPFEVYKIHFFYRTDAINTKNVALIRTVDKLLNIVLYTNNATNWLFYFMLGQRFRQSMVHLICQKYSISCTSFVSTFXXXXXXXXXXXXXKSTPVGCTAGKQTNRLLKPTESPEEMFTLVASQPKFHCTFPAAQNTFPKFY 1478 MDNGLPQTFEIFGNNSAKYVNAVLVYCSKQMDLVNEGNNFQIYINFYRFFVSWFVPLLIMFGEIGTLLCLIVLLKRRTGNAETRMWFIALSIADMYSLLVGLSIFYSSRIHFIFPTLFREDEAIQFDMRQRSAFNCYFLNGLVYFGLLVSTWIQVGISVLRVLSVKSKSPNPHSRKTKKYAIALGVCVTSCVIITCILIGVNIEYTFPKPCPLHKVCRLSIVKSRYFFYSSLTIKVLLPTIFLLACSILIINHLKKFKRRFSSRENNNVNNINSVIRKRVKQKYISYTLLGMNFTFFLLTLPFEVYKIHFFYRTDAINTKNVALIRTVDKLLNIVLYTNNATNWLFYFMLGQRFRQSMVHLICQKYSISCTSFVSTFRRLNTSLRSNRRTKSTPV CTAGKQTNRLLKPTESPEEMFTLVASQPKFHCTFPAAQNTFPKFY Sbjct: 1 MDNGLPQTFEIFGNNSAKYVNAVLVYCSKQMDLVNEGNNFQIYINFYRFFVSWFVPLLIMFGEIGTLLCLIVLLKRRTGNAETRMWFIALSIADMYSLLVGLSIFYSSRIHFIFPTLFREDEAIQFDMRQRSAFNCYFLNGLVYFGLLVSTWIQVGISVLRVLSVKSKSPNPHSRKTKKYAIALGVCVTSCVIITCILIGVNIEYTFPKPCPLHKVCRLSIVKSRYFFYSSLTIKVLLPTIFLLACSILIINHLKKFKRRFSSRENNNVNNINSVIRKRVKQKYISYTLLGMNFTFFLLTLPFEVYKIHFFYRTDAINTKNVALIRTVDKLLNIVLYTNNATNWLFYFMLGQRFRQSMVHLICQKYSISCTSFVSTFRRLNTSLRSNRRTKSTPVVCTAGKQTNRLLKPTESPEEMFTLVASQPKFHCTFPAAQNTFPKFY 441
BLAST of GCR103 vs. Planmine SMEST
Match: SMESG000064805.1 (SMESG000064805.1) HSP 1 Score: 267.314 bits (682), Expect = 4.774e-85 Identity = 160/359 (44.57%), Postives = 222/359 (61.84%), Query Frame = 3 Query: 222 VLVYCSKQMDLVNEGNNFQIYINFYRFFVSWFVPLLIMFGEIGTLLCLIVLLKRRTGNAETRMWFIALSIADMYSLLVGLSIFYSSRIHFIFPTLFREDEAIQFDMRQRSAFNCYFLNGLVYFGLLVSTWIQVGIXXXXXXXXXX-XXPNPHSRKTKKYAIALGVCVTSCVIITCILIGVNIEYTFPKPCPLHKVCRLSIVKSRYFFYSSLTIKVLLPTIFLLACSILIINHLKKFKXXXXXXXXXXXXXXXXXXXXXXKQKYISYTLLGMNFTFFLLTLPFEVYK-IHFFYRTDAINTKNV--------ALIRTVDKLLNIVLYTNNATNWLFYFMLGQRFRQSMVHLICQKYSISCT 1268 VL C Q L++ +++ I NFY+FFVSW+ P L++FG GT++CLIV+ K R+G E R WFIALS+ D+YSL VGLSI Y SRI FIFP Q ++ + ++C+ +N +VY GLL+S W+QVGIS+ R +++K P +S + + AL C+ C+ I +LI ++EY CP+ K+C++ K R FFY SLT+KV++P I LL+ S +I LK + + R N + N K+++Q++IS TLLGMN T L LPFEVYK IHF++ D TK R DKLLNI+LYTNNATNWLFYFMLG+RFR+ + H + K + CT Sbjct: 14 VLAICHNQTKLLDNNDSWLILTNFYKFFVSWYTPCLLIFGVSGTVICLIVINKHRSGQHELRAWFIALSVVDIYSLCVGLSILYISRISFIFPFSQNSTNIFQDGIKNSNKYSCFIINYMVYVGLLLSVWVQVGISMSRAVALKWPNIPRNNSIRLRNSYYALIFCIFMCLSIAFVLIFDSLEYRGTDRCPIFKICKVKSSKFRKFFYFSLTVKVIVPIILLLSSSYVITQKLK--QSVDNYRRNFDRYNYYFSRLKKMQQRHISLTLLGMNSTLLLFVLPFEVYKIIHFYHYEDIKETKPDLKAGQSPHVTARLFDKLLNIILYTNNATNWLFYFMLGKRFRREVSHFLSMKTFLKCT 370
BLAST of GCR103 vs. Planmine SMEST
Match: SMESG000078225.1 (SMESG000078225.1) HSP 1 Score: 163.31 bits (412), Expect = 4.284e-45 Identity = 118/343 (34.40%), Postives = 181/343 (52.77%), Query Frame = 3 Query: 291 FYRFFVSWFVPLLIMFGEIGTLLCLIVLLKRRTGNAETRMWFIALSIADMYSLLVGLSIFYSSRIHFIFPTLFREDEAIQFDMRQRSAFNCYFLNGLVYFGLLVSTWIQVGIXXXXXXXXXXXXPNPHSRKTKKYAIALGVCVTSCVIITCILIGVNIEY--TFPKPCPLHKVCRLSIVKSRYFFYSSLTIKVLLPTIFLLACSILIINHLKKFKXXXXXXXXXXXXXXXXXXXX-----------XXKQKYISYTLLGMNFTFFLLTLPFEVYKIHFF-YRTDAINTKNVA----LIRTVDKLLNIVLYTNNATNWLFYFMLGQRFRQSMVHLI-CQKYSIS 1262 FY++FVSWFVP++I FG GT++ +IVLL RRT E R WF+ALS D++ L+ GLS Y S+++ I FD++ F CYF + ++F LL+S+W+Q GIS LR +S T I L + + + +I++ +++ + +EY + + CRL FF SL ++V++P + LL S +I L + + +++++ + IS LL MN F L LPFE++KI + Y +I TKN L R DK NI++Y N +TNWLFYFMLG+ FR+ +V L C+K++ S Sbjct: 15 FYKYFVSWFVPVVICFGSSGTIVSIIVLLLRRTTQPEIRCWFLALSANDLFGLIFGLSTLYLSKLNLIL-----SKPMWNFDIKSSQEFVCYFNSNCIFFSLLLSSWLQAGISALRAVSTSQPLKLRTKITTSSARIYLILLIGTALILSLLIVNITVEYKEEYLRNRTQGHRCRLKKKFINTFFVFSLIVRVIIPILLLLLSSFMIWKSLNRQQHERRQSCLLGNHDLSASRNSPSPRGKRIHSPHSNHRNISCMLLWMNLAFLLANLPFEIFKIIYKNYDVLSIKTKNEMYLYILSRIFDKFFNILVYLNQSTNWLFYFMLGKNFRKDLVILFRCKKHNWS 352
BLAST of GCR103 vs. Planmine SMEST
Match: SMESG000075889.1 (SMESG000075889.1) HSP 1 Score: 68.1662 bits (165), Expect = 5.675e-13 Identity = 57/205 (27.80%), Postives = 103/205 (50.24%), Query Frame = 3 Query: 285 INFYRFFVSWFVPLLIMFGEIGTLLCLIVLLKRRTGNAETRMWFIALSIADMYSLLVGLSIFYSSRIHFIFPTLFREDEAIQFDMRQRSAFNCYFLNGLVYFGLLVSTWIQVGIXXXXXXXXX--XXXPNPHSRKTKKYAIALGVCVTSCVIITCILIGVNIEYTFPKPCPLHK--VCRLSIVKSRYFFYSSLTIKVLLPTIFLL 887 I FY + VSW VP++++FG GT +C++VL+K T ++W L+ Y ++++ I +I D R + F C+FL+ +YF L +S+W+QVGISV+R +S+ + + A+ + + +T ++ + IL+ + Y + C+LS F++ SL KV++PT+ L+ Sbjct: 21 IYFYHYVVSWLVPVILLFGCSGTSICIVVLVK--TAKRRAKIW--------------SLTSLYLNKLYLI----TNRASSISEDFRSSNIFVCHFLSTGLYFTLFLSSWMQVGISVIRTISISCPLFIKTRFTASVARKALVIHISIT--LLFSIILVNSTLIYDEVYSGNFSRGFRCKLSNKYDDLFYFVSLVFKVIIPTLILI 203
BLAST of GCR103 vs. Planmine SMEST
Match: SMESG000061235.1 (SMESG000061235.1) HSP 1 Score: 53.1434 bits (126), Expect = 2.881e-7 Identity = 81/338 (23.96%), Postives = 151/338 (44.67%), Query Frame = 3 Query: 291 FYRFFVSWFVPLLIMFGEIGTLLCLIVLLKRRTGNAETRMWFIALSIADMYSLLVGLSIFYSSRIHFIFPTLFREDEAIQFDMRQRSAFNCYFLNGLVYFGLLVSTWIQVGIXXXXXXXXXXXXPNPHSRKTKKYAIALGVCVTSCVIITCIL-------IGVNIEYTFPKPCPLHKVCRLSIVKSRYFFYSSLTI-----KVLLPTIFLLACSILIINHLKKFKXXXXXXXXX-XXXXXXXXXXXXXKQKYISYTLLGMNFTFFLLTLPFEVYKIHFFYRTDAINTKNVALIRTVDKLLNIVLYTNNATNWLFYFMLGQRFRQSMVH-LICQKYSIS 1262 Y F + P++++ G IG +L IVL + ++ + I D L+ GL Y I +IF E+E++ F C + LVS W+ V + + P + T+K IA V ++S +I + ++ + ++ F K +H + ++FY TI L+P L++ ++LI+ + + K S NN N S+ + ++S TL+ ++F F + T P V+K+ +R D + +I+ +D + +++YTN++ N+L Y G RFRQ ++ L+C+ S++ Sbjct: 66 LYHIFWTVIPPIILLIGSIGNVLACIVLCCYLIDKCSSYIYLAVMVIVDEMILVTGLLRRY---IGYIFIKHI-ENESVLF---------CRLTQFIGVSSSLVSVWLIV--VMTIERVIIIYLPLRAKQITQK-KIARAV-ISSTIICSSLVASHFFFTVDTHVTKQFNKTNLIH-FGECTAKPQFHYFYRVWTILDASLYSLIPFCVLISLNVLIVREILRSKNNRSILMNNFNQACSKSIKKVSTDTHHLSVTLIAVSFIFLITTTPLVVHKLLIHFR-DKDEVYHSGIIQFLDVIFEMLMYTNHSINFLLYCATGNRFRQHVLSLLLCRTLSLN 384 The following BLAST results are available for this feature:
BLAST of GCR103 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of GCR103 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of GCR103 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of GCR103 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of GCR103 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of GCR103 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of GCR103 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of GCR103 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 4
BLAST of GCR103 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of GCR103 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of GCR103 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of GCR103 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of GCR103 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of GCR103 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30007383 ID=SMED30007383|Name=GCR103|organism=Schmidtea mediterranea sexual|type=transcript|length=1497bpback to top protein sequence of SMED30007383-orf-1 >SMED30007383-orf-1 ID=SMED30007383-orf-1|Name=SMED30007383-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=442bp MDNGLPQTFEIFGNNSAKYVNAVLVYCSKQMDLVNEGNNFQIYINFYRFFback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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