SMED30007276

Overview
NameSMED30007276
Smed IDSMED30007276
Length (bp)5324
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30007276 (SMED30007276) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30007276 (SMED30007276) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30007276 (SMED30007276) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30007276 (SMED30007276) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30007276

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 5

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
central nervous systemSMED30007276SMESG000014766.1 dd_Smed_v4_10073_0_1dd_Smed_v4PMID:27063937
Scimone et al., 2016
whole organism asexual adult colorimetric in situ hybridization evidence
headSMED30007276SMESG000014766.1 dd_Smed_v4_10073_0_1dd_Smed_v4PMID:27063937
Scimone et al., 2016
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neuronSMED30007276SMESG000014766.1 dd_Smed_v4_10073_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult single-cell RNA-sequencing evidence
neuronSMED30007276SMESG000014766.1 dd_Smed_v4_10073_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult colorimetric in situ hybridization evidence
muscle cellSMED30007276SMESG000014766.1 dd_Smed_v4_10073_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30007276 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.002645:5986..19233 -24756
Homology
BLAST of SMED30007276 vs. TrEMBL
Match: A0A0R3X1F0 (Uncharacterized protein OS=Hydatigena taeniaeformis OX=6205 GN=TTAC_LOCUS7010 PE=4 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 2.984e-6
Identity = 24/46 (52.17%), Postives = 31/46 (67.39%), Query Frame = 1
Query: 2614 VIPPELWLDPRGQPVDTEDFINFLMFRDTPYLDKSLKWFGVPPHKR 2751
             +PP LW D +G PVDT DF++FL F  TP L + L WF  PP++R
Sbjct:  246 ALPPALWQDSQGLPVDTHDFVDFLCFYGTPCLPEKLAWFADPPNRR 291          
BLAST of SMED30007276 vs. Planmine SMEST
Match: SMESG000014766.1 (SMESG000014766.1)

HSP 1 Score: 861.677 bits (2225), Expect = 0.000e+0
Identity = 530/530 (100.00%), Postives = 530/530 (100.00%), Query Frame = 1
Query: 1594 MSTRPRRSSLKQKDASVDMLGLSRQEERMLQRAMYDSLRQKSQKCIVKPNLIKNRKISMTTRSKSLRKTLRPPVSGDKRNISLDNISIASPSCSLAIANKPQPEEPKLKRGTRYSPMRRLPLSEMLKSLEDRKNQFNADKKYSNLSHKITHIIPMKRHYPIVKKELLPTKQLKVNTEEAIVXXXXXXXXXXTDQTESLSQSKEIILPSRILEKSFIPKNKRVPRTASLVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQFKSKGKIIKPKSEKLLQKPKKFIYNKRALSQSQRISRVLLATATQRFXXXXXXXXXXXXSGRITSKIKSAKTLQESNSKAVIPPELWLDPRGQPVDTEDFINFLMFRDTPYLDKSLKWFGVPPHKRKQRLYKIIPMENARFNETIVYNEKKDGGGREIVVQCQPPKLNDDGSEXXXXXXXXXXXXXXKIRCPASVNSSCVTQAAIDEEISPSIRLVNGDHAEXXXXXXXXXXXXXXGTETDKPKPNXXXXXXXXXXXXXIHIMEIRKRKT 3183
            MSTRPRRSSLKQKDASVDMLGLSRQEERMLQRAMYDSLRQKSQKCIVKPNLIKNRKISMTTRSKSLRKTLRPPVSGDKRNISLDNISIASPSCSLAIANKPQPEEPKLKRGTRYSPMRRLPLSEMLKSLEDRKNQFNADKKYSNLSHKITHIIPMKRHYPIVKKELLPTKQLKVNTEEAIVRRPGRPRIIRTDQTESLSQSKEIILPSRILEKSFIPKNKRVPRTASLVARSSWISQNSSPSSPTRSSIRVSSIVSEPNQFKSKGKIIKPKSEKLLQKPKKFIYNKRALSQSQRISRVLLATATQRFKKAKIGDKIAKKSGRITSKIKSAKTLQESNSKAVIPPELWLDPRGQPVDTEDFINFLMFRDTPYLDKSLKWFGVPPHKRKQRLYKIIPMENARFNETIVYNEKKDGGGREIVVQCQPPKLNDDGSELVSLDSDQTSLDDSKIRCPASVNSSCVTQAAIDEEISPSIRLVNGDHAENDSNDCSSSINNKNGTETDKPKPNKAAKSAVKSDSKSIHIMEIRKRKT
Sbjct:    1 MSTRPRRSSLKQKDASVDMLGLSRQEERMLQRAMYDSLRQKSQKCIVKPNLIKNRKISMTTRSKSLRKTLRPPVSGDKRNISLDNISIASPSCSLAIANKPQPEEPKLKRGTRYSPMRRLPLSEMLKSLEDRKNQFNADKKYSNLSHKITHIIPMKRHYPIVKKELLPTKQLKVNTEEAIVRRPGRPRIIRTDQTESLSQSKEIILPSRILEKSFIPKNKRVPRTASLVARSSWISQNSSPSSPTRSSIRVSSIVSEPNQFKSKGKIIKPKSEKLLQKPKKFIYNKRALSQSQRISRVLLATATQRFKKAKIGDKIAKKSGRITSKIKSAKTLQESNSKAVIPPELWLDPRGQPVDTEDFINFLMFRDTPYLDKSLKWFGVPPHKRKQRLYKIIPMENARFNETIVYNEKKDGGGREIVVQCQPPKLNDDGSELVSLDSDQTSLDDSKIRCPASVNSSCVTQAAIDEEISPSIRLVNGDHAENDSNDCSSSINNKNGTETDKPKPNKAAKSAVKSDSKSIHIMEIRKRKT 530          
BLAST of SMED30007276 vs. Planmine SMEST
Match: SMESG000014766.1 (SMESG000014766.1)

HSP 1 Score: 855.514 bits (2209), Expect = 0.000e+0
Identity = 530/534 (99.25%), Postives = 530/534 (99.25%), Query Frame = 1
Query: 1594 MSTRPRRSSLKQKDASVDMLGLSRQEERMLQRAMYDSLRQKSQKCIVKPNLIKNRKISMTTRSKSLRKTLRPPVSGDKRNISLDNISIASPSCSLAIANKPQPEEPKLKRGTRYSPMRRLPLSEMLKSLEDRKNQFNADKKYSNLSHKITHIIPMKRHYPIVKKELLPTKQLKVNTEEAIVXXXXXXXXXXTDQTESLSQSKEIILPSRILEKSFIPKNKRVPRTASLVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQFKSKGKIIKPKSEKLLQKPKKFIYNKRALSQSQRISRVLLATATQRFXXXXXXXXXXXXSGRITSKIKSAKTLQESNSKAVIPPELWLDPRGQPVDTEDFINFLMFRDTPYLDKSLKWFGVPPHKRKQRLYKIIPMENARFNETIVYNEKKDGGGREIVVQCQPPKLNDDGSEXXXXXXXX----XXXXXXKIRCPASVNSSCVTQAAIDEEISPSIRLVNGDHAEXXXXXXXXXXXXXXGTETDKPKPNXXXXXXXXXXXXXIHIMEIRKRKT 3183
            MSTRPRRSSLKQKDASVDMLGLSRQEERMLQRAMYDSLRQKSQKCIVKPNLIKNRKISMTTRSKSLRKTLRPPVSGDKRNISLDNISIASPSCSLAIANKPQPEEPKLKRGTRYSPMRRLPLSEMLKSLEDRKNQFNADKKYSNLSHKITHIIPMKRHYPIVKKELLPTKQLKVNTEEAIVRRPGRPRIIRTDQTESLSQSKEIILPSRILEKSFIPKNKRVPRTASLVARSSWISQNSSPSSPTRSSIRVSSIVSEPNQFKSKGKIIKPKSEKLLQKPKKFIYNKRALSQSQRISRVLLATATQRFKKAKIGDKIAKKSGRITSKIKSAKTLQESNSKAVIPPELWLDPRGQPVDTEDFINFLMFRDTPYLDKSLKWFGVPPHKRKQRLYKIIPMENARFNETIVYNEKKDGGGREIVVQCQPPKLNDDGSELVSLDSDQ    TSLDDSKIRCPASVNSSCVTQAAIDEEISPSIRLVNGDHAENDSNDCSSSINNKNGTETDKPKPNKAAKSAVKSDSKSIHIMEIRKRKT
Sbjct:    1 MSTRPRRSSLKQKDASVDMLGLSRQEERMLQRAMYDSLRQKSQKCIVKPNLIKNRKISMTTRSKSLRKTLRPPVSGDKRNISLDNISIASPSCSLAIANKPQPEEPKLKRGTRYSPMRRLPLSEMLKSLEDRKNQFNADKKYSNLSHKITHIIPMKRHYPIVKKELLPTKQLKVNTEEAIVRRPGRPRIIRTDQTESLSQSKEIILPSRILEKSFIPKNKRVPRTASLVARSSWISQNSSPSSPTRSSIRVSSIVSEPNQFKSKGKIIKPKSEKLLQKPKKFIYNKRALSQSQRISRVLLATATQRFKKAKIGDKIAKKSGRITSKIKSAKTLQESNSKAVIPPELWLDPRGQPVDTEDFINFLMFRDTPYLDKSLKWFGVPPHKRKQRLYKIIPMENARFNETIVYNEKKDGGGREIVVQCQPPKLNDDGSELVSLDSDQVVVCTSLDDSKIRCPASVNSSCVTQAAIDEEISPSIRLVNGDHAENDSNDCSSSINNKNGTETDKPKPNKAAKSAVKSDSKSIHIMEIRKRKT 534          
BLAST of SMED30007276 vs. Planmine SMEST
Match: SMESG000014766.1 (SMESG000014766.1)

HSP 1 Score: 837.795 bits (2163), Expect = 0.000e+0
Identity = 525/534 (98.31%), Postives = 525/534 (98.31%), Query Frame = 1
Query: 1594 MSTRPRRSSLKQKDASVDMLGLSRQEERMLQRAMYDSLRQKSQKCIVKPNLIKNRKISMTTRSKSLRKTLRPPVSGDKRNISLDNISIASPSCSLAIANKPQPEEPKLKRGTRYSPMRRLPLSEMLKSLEDRKNQFNADKKYSNLSHKITHIIPMKRHYPIVKKELLPTKQLKVNTEEAIVXXXXXXXXXXTDQTESLSQSKEIILPSRILEKSFIPKNKRVPRTASLVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQFKSKGKIIKPKSEKLLQKPKKFIYNKRALSQSQRISRVLLATATQRFXXXXXXXXXXXXSGRITSKIKSAKTLQESNSKAVIPPELWLDPRGQPVDTEDFINFLMFRDTPYLDKSLKWFGVPPHKRKQRLYKIIPMENARFNETIVYNEKKDGGGREIVVQCQPPKLNDDGSEXXXXXXXX----XXXXXXKIRCPASVNSSCVTQAAIDEEISPSIRLVNGDHAEXXXXXXXXXXXXXXGTETDKPKPNXXXXXXXXXXXXXIHIMEIRKRKT 3183
            MSTRPRRSSLKQKDASVDMLGLSRQEERMLQRAMYDSLRQKSQKCIVKPNLIKNRKISMTTRSKSLRKTLRPPVSGDKRNISLDNISIASPSCSLAIANKPQPEEPKLKRGTRYSPMRRLPLSEMLKSLEDRKNQFNADKKYSNLSHKITHIIPMKRHYPIVKKELLPTKQLKVNTEEAIVRRPGRPRIIRTDQTESLSQSKEIILPSRILEKSFIPKNKRVPRTASLVARSSWISQNSSPSSPTRSSIRVSSIVSEPNQFKSKGKIIKPKSEKLLQKPKKFIYNKRALSQSQRISRVLLATATQRFKKAKIGDKIAKKSGRITSKIKSAKTLQESNSKAVIPPELWLDPRGQPVDTEDFINFLMFR     DKSLKWFGVPPHKRKQRLYKIIPMENARFNETIVYNEKKDGGGREIVVQCQPPKLNDDGSELVSLDSDQ    TSLDDSKIRCPASVNSSCVTQAAIDEEISPSIRLVNGDHAENDSNDCSSSINNKNGTETDKPKPNKAAKSAVKSDSKSIHIMEIRKRKT
Sbjct:    1 MSTRPRRSSLKQKDASVDMLGLSRQEERMLQRAMYDSLRQKSQKCIVKPNLIKNRKISMTTRSKSLRKTLRPPVSGDKRNISLDNISIASPSCSLAIANKPQPEEPKLKRGTRYSPMRRLPLSEMLKSLEDRKNQFNADKKYSNLSHKITHIIPMKRHYPIVKKELLPTKQLKVNTEEAIVRRPGRPRIIRTDQTESLSQSKEIILPSRILEKSFIPKNKRVPRTASLVARSSWISQNSSPSSPTRSSIRVSSIVSEPNQFKSKGKIIKPKSEKLLQKPKKFIYNKRALSQSQRISRVLLATATQRFKKAKIGDKIAKKSGRITSKIKSAKTLQESNSKAVIPPELWLDPRGQPVDTEDFINFLMFR-----DKSLKWFGVPPHKRKQRLYKIIPMENARFNETIVYNEKKDGGGREIVVQCQPPKLNDDGSELVSLDSDQVVVCTSLDDSKIRCPASVNSSCVTQAAIDEEISPSIRLVNGDHAENDSNDCSSSINNKNGTETDKPKPNKAAKSAVKSDSKSIHIMEIRKRKT 529          
BLAST of SMED30007276 vs. Planmine SMEST
Match: SMESG000014766.1 (SMESG000014766.1)

HSP 1 Score: 798.505 bits (2061), Expect = 0.000e+0
Identity = 468/480 (97.50%), Postives = 470/480 (97.92%), Query Frame = 1
Query: 1594 MSTRPRRSSLKQKDASVDMLGLSRQEERMLQRAMYDSLRQKSQKCIVKPNLIKNRKISMTTRSKSLRKTLRPPVSGDKRNISLDNISIASPSCSLAIANKPQPEEPKLKRGTRYSPMRRLPLSEMLKSLEDRKNQFNADKKYSNLSHKITHIIPMKRHYPIVKKELLPTKQLKVNTEEAIVXXXXXXXXXXTDQTESLSQSKEIILPSRILEKSFIPKNKRVPRTASLVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQFKSKGKIIKPKSEKLLQKPKKFIYNKRALSQSQRISRVLLATATQRFXXXXXXXXXXXXSGRITSKIKSAKTLQESNSKAVIPPELWLDPRGQPVDTEDFINFLMFRDTPYLDKSLKWFGVPPHKRKQRLYKIIPMENARFNETIVYNEKKDGGGREIVVQCQPPKLNDDGSEXXX----XXXXXXXXXXXKIRCPASVNSSCVTQAAIDEEISPSIRLV 3021
            MSTRPRRSSLKQKDASVDMLGLSRQEERMLQRAMYDSLRQKSQKCIVKPNLIKNRKISMTTRSKSLRKTLRPPVSGDKRNISLDNISIASPSCSLAIANKPQPEEPKLKRGTRYSPMRRLPLSEMLKSLEDRKNQFNADKKYSNLSHKITHIIPMKRHYPIVKKELLPTKQLKVNTEEAIVRRPGRPRIIRTDQTESLSQSKEIILPSRILEKSFIPKNKRVPRTASLVARSSWISQNSSPSSPTRSSIRVSSIVSEPNQFKSKGKIIKPKSEKLLQKPKKFIYNKRALSQSQRISRVLLATATQRFKKAKIGDKIAKKSGRITSKIKSAKTLQESNSKAVIPPELWLDPRGQPVDTEDFINFLMFRDTPYLDKSLKWFGVPPHKRKQRLYKIIPMENARFNETIVYNEKKDGGGREIVVQCQPPKLNDDGSELVS         TSLDDSKIRCPASVNSSCVTQAAIDEEISPSI+ +
Sbjct:    1 MSTRPRRSSLKQKDASVDMLGLSRQEERMLQRAMYDSLRQKSQKCIVKPNLIKNRKISMTTRSKSLRKTLRPPVSGDKRNISLDNISIASPSCSLAIANKPQPEEPKLKRGTRYSPMRRLPLSEMLKSLEDRKNQFNADKKYSNLSHKITHIIPMKRHYPIVKKELLPTKQLKVNTEEAIVRRPGRPRIIRTDQTESLSQSKEIILPSRILEKSFIPKNKRVPRTASLVARSSWISQNSSPSSPTRSSIRVSSIVSEPNQFKSKGKIIKPKSEKLLQKPKKFIYNKRALSQSQRISRVLLATATQRFKKAKIGDKIAKKSGRITSKIKSAKTLQESNSKAVIPPELWLDPRGQPVDTEDFINFLMFRDTPYLDKSLKWFGVPPHKRKQRLYKIIPMENARFNETIVYNEKKDGGGREIVVQCQPPKLNDDGSELVSLDSDQVVVCTSLDDSKIRCPASVNSSCVTQAAIDEEISPSIKFL 480          
The following BLAST results are available for this feature:
BLAST of SMED30007276 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007276 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007276 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007276 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007276 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007276 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007276 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007276 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0R3X1F02.984e-652.17Uncharacterized protein OS=Hydatigena taeniaeformi... [more]
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BLAST of SMED30007276 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007276 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007276 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007276 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007276 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007276 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 4
Match NameE-valueIdentityDescription
SMESG000014766.10.000e+0100.00SMESG000014766.1[more]
SMESG000014766.10.000e+099.25SMESG000014766.1[more]
SMESG000014766.10.000e+098.31SMESG000014766.1[more]
SMESG000014766.10.000e+097.50SMESG000014766.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30007276 ID=SMED30007276|Name=SMED30007276|organism=Schmidtea mediterranea sexual|type=transcript|length=5324bp
AGTTTGCTTATAATTATAATGGGGAAAAATCAATAATTATTGAATATTTT
ATAAATTATAATCTATGTAATGCTTACAACAATTCATATTTTTCTATTAA
TTTTTTTTAAAACCGATGAAATTTCATGTTGGACATTTAATGATGGATTG
GATATGAAAATTCCGTTTAAATCTCAACTGAGTCCGAAATTTCCGAAATT
AGTAAGAAGAGAAATTAAATTAAATCCAGTAAAAAATCAAATAGAAACTC
GCTATTCCGTTCATAAGATGACAATTACTTTTACAAACTGCTCAAAAAAT
TACGAATGGGGAAGTAAAGAAAAAATTATAATAGTGGCTGATAAAAACCA
TCCAGCGGCAGTTTTTGTGCTTTATAATTTAAACATGAATAAGATAAATA
AATGCTTGTTGTCTAACTATCTGAAAGTATCATACAATCTCCATGGGTAT
CCGTTGATGGTTATTTATGAAAACAACCATAAGCAAATTATTGAGGCATC
CTATCCCATTCATTTCCAATTCGGTGACCTTCAGCTGGGGCTTGATAAGT
TGTATTATAAAACCTTGGATGAAATCAAAATACGTTGCGCTCTTTTGACG
CCGTGGAAATACTTATTTACCGGCCAATTAAAGATTATTCCATCGAATTC
TAATTTGACAATTTACTCGGAAAAGTACTTAAATCACGGTTTCGTGTTGG
AATTAATCGGTAAAATCACTCCACAGATTTATCTTTTGAATGTCACCTGT
CGGTTTTCGGATATTTTCGTCGTAAAAACCGTCCCGATCGTTGGGCATCA
CGGATATCAATACATCGTAATAATCAACTATTCGGCTTTAACCATCTGTT
TGGGGTTCTTTTTGATTGGATTAGTTCTGTGGGGAATTTACACGTTGATT
ATCGGTCAAAAACGTCGTCTCGCTTATGATTTGGTTGCGTTCCATACAGA
ATGCGTCGAAGACCGAACTATTCGATTTTGGGATCCGATTCTTAACAATC
TCACCTCGCCCGTTCGGAAATACGCGGTTCCCGGGTCTTTGACTGTGTTT
CTGTTGCGTAGGAATATCAATCGATTGTTTTCCAAGCTGTTTTCTATTTA
TCCAAAACCGAAATTACAGACGCTCCACGGTGACACGGCGCTTGTTGAAA
TCGAACGGGAAAGGGCGAGAATTACCGAAAAATACAATCCATTACTCACG
AGTCCACTTGGGAGACGGGTAATTCAAGCTCTAGGTCCACAGCCCGTTAA
GAAACCCATTTATCTGACCCCACCGTTCCCAGACTTGCCACGAATTACGA
CAAATTTACCCCCAGAACAGTCCGAATATCCCGTAGTCGAGAGTCATGTG
CCACTAGAACGACAAACGGTCAGCGGGTTGCCTTATGTTACCGTTGAGCA
AAAGAAGAATTCACCTTGCTGGTCCGCTAAAGATGCGACAATTCCAATTC
AATACGGCGTCACTTACAATGACATTTCGTGAATATTTTCCATTTTTCTT
TTATTATTTATGAAAATGAAATAAAATTGTTTTCTACAATTTATTAATGA
TAGTTTATTGTGCTTATAAAATCGGTATCATTTTCAGGCTGAAATGTCAA
CAAGACCACGCAGATCTTCATTAAAACAAAAAGATGCGTCTGTTGATATG
CTCGGATTGTCACGCCAAGAAGAACGAATGCTTCAAAGAGCTATGTATGA
TTCATTACGGCAAAAGTCACAGAAATGTATAGTTAAGCCAAATTTGATAA
AGAACAGAAAGATATCCATGACAACTCGCAGTAAATCTCTTAGAAAAACA
TTACGTCCACCAGTTTCTGGTGACAAGAGAAATATAAGCTTGGATAATAT
TTCCATAGCTTCTCCGTCATGTTCATTAGCAATAGCTAACAAACCTCAAC
CTGAAGAACCGAAACTCAAAAGAGGGACTCGATATTCTCCAATGCGTAGA
TTACCACTCAGTGAGATGCTCAAGTCCTTGGAAGACAGAAAAAATCAGTT
CAACGCAGACAAAAAATACTCAAACTTGTCTCATAAAATCACGCATATCA
TACCAATGAAACGCCACTATCCGATAGTTAAAAAAGAATTACTTCCAACG
AAGCAACTAAAAGTAAACACTGAAGAGGCTATTGTAAGAAGACCTGGTCG
TCCAAGAATTATCAGAACAGACCAAACTGAATCTCTATCCCAGTCCAAAG
AAATTATACTTCCTTCTAGAATTTTAGAAAAATCTTTCATTCCTAAAAAT
AAACGAGTTCCACGAACTGCATCATTGGTTGCCAGATCATCTTGGATCAG
TCAAAATTCTAGTCCTTCGAGTCCTACTCGATCATCAATTAGAGTTTCCT
CTATTGTTTCTGAGCCCAATCAATTCAAATCAAAAGGAAAAATTATAAAA
CCGAAATCAGAAAAATTACTACAGAAACCGAAGAAATTTATCTATAATAA
AAGAGCTTTGTCACAATCTCAGAGAATTTCAAGAGTTCTCTTGGCAACGG
CAACCCAAAGATTTAAGAAAGCGAAAATCGGTGATAAAATTGCAAAGAAG
TCAGGGAGAATTACATCGAAAATCAAATCGGCAAAAACACTTCAGGAATC
GAATAGTAAAGCGGTGATTCCTCCAGAGTTGTGGCTCGATCCTCGGGGGC
AGCCTGTTGACACGGAAGATTTTATCAACTTTTTGATGTTTCGAGACACG
CCATATTTAGACAAATCTCTCAAATGGTTCGGAGTGCCTCCGCATAAAAG
AAAACAGAGATTATACAAAATTATCCCAATGGAAAATGCGAGATTCAATG
AAACAATAGTGTACAATGAAAAGAAAGATGGTGGAGGCCGAGAAATAGTA
GTCCAGTGTCAACCTCCCAAATTGAATGATGACGGCAGTGAGCTGGTTTC
ATTGGATTCTGACCAGACCAGCCTCGACGACAGTAAGATCAGATGCCCTG
CTTCTGTCAACTCCAGTTGTGTTACCCAAGCAGCAATTGATGAAGAAATT
TCTCCTTCTATCAGATTGGTCAATGGTGACCATGCCGAGAATGATAGTAA
TGATTGTAGTAGTAGTATTAATAATAAAAATGGCACCGAAACGGACAAAC
CGAAACCCAACAAAGCCGCCAAGTCGGCCGTCAAATCAGATTCGAAATCA
ATTCATATTATGGAAATACGCAAGCGGAAAACTTGAGATTATTTTTACGT
ATTTAGAAAATTTAGTTTAGTTTCCTTTTCCAATGATTTTGTTCGATCTT
GAATTTTTGCTGTGAATATAAATGCATTTTCGTGCAATTCAATAAATTCT
CGTGATTCCAATCAATAATTCTTATTATTGATTTTTTCTCCAAATATAGA
TTTTTTCTGGTAAATATATCGAGCTGCACTGTTTTTTTTAAATTCAATTT
TCTACTTAAATTATTATTGTCGTTCAGAATTTTTATGCTTCATTTATCCT
CCAATGAAATTGTAGCCCTGTTCTAAATGAGTTCTGATTCGTTAATCGTT
GTTGACGCGTACATTTTTGTGATTTATTGATTGGTGTAATGTTCAGTGAT
CTCGAGTGAATTTATCATTTAATTGGCATGGATTTGTGTTTGTTTTAATA
CGCTGTCAAATATTTTATACATTTTCATTGTCAAGGTTATTGAATCGGGA
AATGTATAATAAATTGTTTCATTTTTATCTCCAGAGATTTAATATGAAAA
ATTGATGGTTTTTGAATAACTGGCTTCCGAATTTTTGTCAAAAAAAAGAA
TAAGGAAAAATATTTTATTTAATTTTATAAAATAACAAAAGATGAAATCA
ATACCAAAGTCAAAATATAAAAAATCTAAGGATTACATATTACTTACATA
AAATAACGAAAACAAAAATTTCAATAATATTTAATTCGCTGATTTGTCAT
TGCTCTGTCAGGATTGGTTATCAGCCTTGTTTCCCTCACCCATTACCTTA
ATTTTATTAAACTTTATCCATTGTCCCTTATGGCAACTTTAAATATAATT
TGTACTTGTAACTTTGTGAAGGAGTTCCAATTTAACTTTTAGACTCGCAG
TGAGAAGGACAGTAAGAAATTTTATTTCCACCAATTTAAAGAAAGGAATG
TAATTGATTAATTTTGAAAGTAATTCTAAGTTCGGTCTTTTGAGAATTAT
GTTGTAATTTTGTGTCATGGAATGAAAATATTTAATAATTAGACTTAGAT
ATCAAGGACAATGCAGTATTTAGGGTTCCGGTGCAGTTGGGTTATACAAA
ATTTAGGCGGAAACAGAGTTGTGTGTGGGATAATCAACGTGAAAATTCAA
CATAAAAATAAAGTTGTATGCAAAAAGTTTGAGAAAATTAATATATTTGG
TGAGACAGGAATGAGCGGATGGCAAATGGTGAAAAGAACGCGAATGAAGT
AATATAAAGAAATATTTTAAAAATGCGTATATATTAAGTAGGCATTCCAG
AGTTCGACAGACCAAATATCAGCCGCTCAAGTCAATTAAATTTATCATTT
CACGCCTAGAGGAATCATTGGTAATGAAAGGGTTAAAGTGAAACAATACC
TCAATAATAAAATAAATAATTATTGAAATGTATCAAATGATTGGTGTGAG
ATGGATAAAAGTCAAACATGTGCGTCCTTAATTAATAAGTACAAATTAAA
AGAAAACAAACTATAAAATGGAAATATTTTATCTCTACAGCTTGGTCAAG
AATAAAAAAAGTAAATGAAAAGAAAATTTAAATGATCTCAAGTGCCAGCA
AATAACAATTTATACAAAGCAGACACAAATGAAGAAATCAGAAGGAACAC
TGAAGCGAGACTTAAGAGAAAAATAATTATAGAAAACAACAAAGAGAAAA
CAAAGTTATTGGTGATAAAGGGATTATCGGAGTTACGAAATTATTAAGCT
TATTTATCGTAACTTTCAAGTATTTTCAAGTTTAAGAAAAGAGAGTAGAC
AAATCAATTCGACCGATTGTCGAAACCAGAAGTATTAACCAGGTGGTTAG
AAATAGTGTTATTCTTCCCGACGGATTGTAATAAGCTCTTGATAATCTTT
GTTTTAGTAATGAATCAGTTTGTGACATTGCAAGTTGGCTATCAATTGTG
TAGACGTATAAAAGTTTCTATTGTTCGGAATTTGTTATTATTGTCATGAA
TCAATAGTCGTTGTTAATTTGGCATTTCATCGGCAACCTCAACAAATGAG
ACTTTTGAAGTTAAATTAATAAATTTGTTATTCAAAGTATTTTAATATAT
GTATATAAATCTCTAGGAAACTAAGTTTGTATTTTATCTTCCCAGGGAAT
TATTTATTATCCCTAAAATATAAT
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protein sequence of SMED30007276-orf-1

>SMED30007276-orf-1 ID=SMED30007276-orf-1|Name=SMED30007276-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=531bp
MSTRPRRSSLKQKDASVDMLGLSRQEERMLQRAMYDSLRQKSQKCIVKPN
LIKNRKISMTTRSKSLRKTLRPPVSGDKRNISLDNISIASPSCSLAIANK
PQPEEPKLKRGTRYSPMRRLPLSEMLKSLEDRKNQFNADKKYSNLSHKIT
HIIPMKRHYPIVKKELLPTKQLKVNTEEAIVRRPGRPRIIRTDQTESLSQ
SKEIILPSRILEKSFIPKNKRVPRTASLVARSSWISQNSSPSSPTRSSIR
VSSIVSEPNQFKSKGKIIKPKSEKLLQKPKKFIYNKRALSQSQRISRVLL
ATATQRFKKAKIGDKIAKKSGRITSKIKSAKTLQESNSKAVIPPELWLDP
RGQPVDTEDFINFLMFRDTPYLDKSLKWFGVPPHKRKQRLYKIIPMENAR
FNETIVYNEKKDGGGREIVVQCQPPKLNDDGSELVSLDSDQTSLDDSKIR
CPASVNSSCVTQAAIDEEISPSIRLVNGDHAENDSNDCSSSINNKNGTET
DKPKPNKAAKSAVKSDSKSIHIMEIRKRKT*
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protein sequence of SMED30007276-orf-2

>SMED30007276-orf-2 ID=SMED30007276-orf-2|Name=SMED30007276-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=471bp
MLTTIHIFLLIFFKTDEISCWTFNDGLDMKIPFKSQLSPKFPKLVRREIK
LNPVKNQIETRYSVHKMTITFTNCSKNYEWGSKEKIIIVADKNHPAAVFV
LYNLNMNKINKCLLSNYLKVSYNLHGYPLMVIYENNHKQIIEASYPIHFQ
FGDLQLGLDKLYYKTLDEIKIRCALLTPWKYLFTGQLKIIPSNSNLTIYS
EKYLNHGFVLELIGKITPQIYLLNVTCRFSDIFVVKTVPIVGHHGYQYIV
IINYSALTICLGFFLIGLVLWGIYTLIIGQKRRLAYDLVAFHTECVEDRT
IRFWDPILNNLTSPVRKYAVPGSLTVFLLRRNINRLFSKLFSIYPKPKLQ
TLHGDTALVEIERERARITEKYNPLLTSPLGRRVIQALGPQPVKKPIYLT
PPFPDLPRITTNLPPEQSEYPVVESHVPLERQTVSGLPYVTVEQKKNSPC
WSAKDATIPIQYGVTYNDIS*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
PLANA:0000101muscle cell
PLANA:0000103central nervous system
PLANA:0000418head
Vocabulary: INTERPRO
TermDefinition
IPR011528NERD
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 475..530
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 482..499