SMED30007162

Overview
NameSMED30007162
Smed IDSMED30007162
Length (bp)1278
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30007162 (SMED30007162) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30007162 (SMED30007162) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30007162 (SMED30007162) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30007162 (SMED30007162) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30007162

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 7

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30007162h1SMcG0021735 SmedASXL_001542SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
nervous systemSMED30007162h1SMcG0021735 dd_Smed_v4_12844_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30007162h1SMcG0021735 dd_Smed_v4_12844_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymaSMED30007162h1SMcG0021735 dd_Smed_v4_12844_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30007162h1SMcG0021735 dd_Smed_v6_12844_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
epidermisSMED30007162h1SMcG0021735 dd_Smed_v4_12844_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
dorsal region of the epidermisSMED30007162h1SMcG0021735 dd_Smed_v4_12844_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30007162 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.002986:3495..15052 -6264
Homology
[Close]
BLAST of SMED30007162 vs. TrEMBL
Match: A0A1S3I2F2 (uncharacterized protein LOC106160400 OS=Lingula unguis OX=7574 GN=LOC106160400 PE=4 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.033e-15
Identity = 89/322 (27.64%), Postives = 137/322 (42.55%), Query Frame = 3 
Query:  156 RHNPHPLYVRHVKGFLGQPTQIVETDEDNVILSQGTVEGFIQDSVKRGVWN----YMDSKSFVR---------------KTRDLDEILSLQYFTGLQNFSFKENYLPYLGYREYFSSWRKNLRNLS-INSYQFIKDKTKTKNENKFTRVENSNEWNKTNSDIFRRKSMYSS-SGRLSVYQDRDRKSSFRERIRSQQRISTGISYKSNEKDEDPDFNNFDASVFVLIANLLQTTSPHVVQNWLSQSTDREKAIMISMIXXXXXXXXXXXXXXGDMQTEKETQTSKCNM----TA-----ESALRDIKNNSKNGKSAEDKCDIL 1031
            RHNPHP  VRH+KG L  P   V  D            GF         +N    Y D+KS  R                   ++ I  LQ+FTGL ++ F+E  +P +G      +WR  L+ L+ +  Y   +D+ + K E K  +VE          ++ R K+ YSS +GRL     R   +  R+  R  +R      Y+    + D      +  VF ++A +LQT  P+ VQ WL  S +REKA+++ MI+  + ++       G+ Q   E       M    TA     ++A+  I   ++ G S E    I+
Sbjct:   55 RHNPHPRRVRHLKGLLDMPICSVNDD------------GFFASPRYSLFYNSPNSYNDAKSMQRGLGVTLPVNAINVNSTLHPINTITGLQHFTGLNSYPFREKAVPKVGMVPQTEAWRDELKMLTELAQYNPSEDR-RLKPEEK--KVE----------EMTRPKTQYSSETGRLIPPPSR---AMTRQGSRQNKRQQFFSQYEHIAPEPD-----METMVFQMLAQILQTDDPNAVQAWLVSSGEREKALVLDMIRAAITSREEYYNKAGNPQEYVEPSRVGTAMDRIATASVERVQTAMLGITEATQTGASLEGSAQII 343
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BLAST of SMED30007162 vs. TrEMBL
Match: A0A1I8JKL9 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.252e-13
Identity = 70/252 (27.78%), Postives = 109/252 (43.25%), Query Frame = 3 
Query:  156 RHNPHPLYVRHVKGFLGQPTQIVETDEDNVILSQGTVEGFIQDS------VKRGVWNYMDSKSFVRKTRDLDEILSLQYFTGLQNFSFKENYLPYLGYREYFSSWRKNLRNLSINSYQFIKDKTKTKNENKFTRVENSNEWNKTNSDIFRR---------KSMYS-SSGRLSVYQDRDRKSSFRERIRSQQRISTGISYKSNEKDEDPDFNNFDASVFVLIANLLQTTSPHVVQNWLSQSTDREKAIMISMI 863
            RHNPHP    H+KG LG P  +V  D D+   S  T   F  +         + +   +++         LD +  LQYFT L+N+SFKE  +P LG      SWR+ LR+L+  +  F  ++          R + +     T  D  R+         + MYS  +GRL     R          R         +Y+      D      +++VF ++  +LQT   + VQ WL  ++DREKA+++ +I
Sbjct:   41 RHNPHPHRCVHIKGLLGLPIPVVVDDCDDS--SYETHLCFPPNGHNDEKLASQRLLLPVNAIHLNSHKHPLDTVNGLQYFTNLRNYSFKEKAVPRLGLVPVTESWREQLRSLTDQT--FHPEQPVAPAPAADGRGDMNLRREATYPDPARQQQPEQSQTARPMYSRQTGRLIPPPSRAMSRRPLRSSRRSTPAHVLSNYEHISAAPD-----LESAVFSMLCQILQTEDFNAVQAWLVSASDREKALVMDVI 283
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BLAST of SMED30007162 vs. TrEMBL
Match: A0A1I8H186 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.489e-13
Identity = 70/252 (27.78%), Postives = 109/252 (43.25%), Query Frame = 3 
Query:  156 RHNPHPLYVRHVKGFLGQPTQIVETDEDNVILSQGTVEGFIQDS------VKRGVWNYMDSKSFVRKTRDLDEILSLQYFTGLQNFSFKENYLPYLGYREYFSSWRKNLRNLSINSYQFIKDKTKTKNENKFTRVENSNEWNKTNSDIFRR---------KSMYS-SSGRLSVYQDRDRKSSFRERIRSQQRISTGISYKSNEKDEDPDFNNFDASVFVLIANLLQTTSPHVVQNWLSQSTDREKAIMISMI 863
            RHNPHP    H+KG LG P  +V  D D+   S  T   F  +         + +   +++         LD +  LQYFT L+N+SFKE  +P LG      SWR+ LR+L+  +  F  ++          R + +     T  D  R+         + MYS  +GRL     R          R         +Y+      D      +++VF ++  +LQT   + VQ WL  ++DREKA+++ +I
Sbjct:   41 RHNPHPHRCVHIKGLLGLPIPVVVDDCDDS--SYETHLCFPPNGHNDEKLASQRLLLPVNAIHLNSHKHPLDTVNGLQYFTNLRNYSFKEKAVPRLGLVPVTESWREQLRSLTDQT--FHPEQPVAPAPAADGRGDMNLRREATYPDPARQQQPEQSQTARPMYSRQTGRLIPPPSRAMSRRPLRSSRRSTPAHVLSNYEHISAAPD-----LESAVFSMLCQILQTEDFNAVQAWLVSASDREKALVMDVI 283
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BLAST of SMED30007162 vs. TrEMBL
Match: A0A267H1S7 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig006934g1 PE=4 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.383e-13
Identity = 70/252 (27.78%), Postives = 109/252 (43.25%), Query Frame = 3 
Query:  156 RHNPHPLYVRHVKGFLGQPTQIVETDEDNVILSQGTVEGFIQDS------VKRGVWNYMDSKSFVRKTRDLDEILSLQYFTGLQNFSFKENYLPYLGYREYFSSWRKNLRNLSINSYQFIKDKTKTKNENKFTRVENSNEWNKTNSDIFRR---------KSMYS-SSGRLSVYQDRDRKSSFRERIRSQQRISTGISYKSNEKDEDPDFNNFDASVFVLIANLLQTTSPHVVQNWLSQSTDREKAIMISMI 863
            RHNPHP    H+KG LG P  +V  D D+   S  T   F  +         + +   +++         LD +  LQYFT L+N+SFKE  +P LG      SWR+ LR+L+  +  F  ++          R + +     T  D  R+         + MYS  +GRL     R          R         +Y+      D      +++VF ++  +LQT   + VQ WL  ++DREKA+++ +I
Sbjct:   41 RHNPHPHRCVHIKGLLGLPIPVVVDDCDDS--SYETHLCFPPNGHNDEKLASQRLLLPVNAIHLNSHKHPLDTVNGLQYFTNLRNYSFKEKAVPRLGLVPVTESWREQLRSLTDQT--FHPEQPVAPAPAADGRGDMNLRREATYPDPARQQQPEQSQTARPMYSRQTGRLIPPPSRAMSRRPLRSSRRSTPAHVLSNYEHISVAPD-----LESAVFSMLCQILQTEDFNAVQAWLVSASDREKALVMDVI 283
[Close]
BLAST of SMED30007162 vs. TrEMBL
Match: K1R2A0 (Protein SPATIAL OS=Crassostrea gigas OX=29159 GN=CGI_10026923 PE=4 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.440e-12
Identity = 61/243 (25.10%), Postives = 98/243 (40.33%), Query Frame = 3 
Query:  156 RHNPHPLYVRHVKGFLGQPTQIVETDEDNVILSQGTVEGFIQDSVKRGVWNYMDSKSFV------RKTRDLDEILSLQYFTGLQNFSFKENYLPYLGYREYFSSWRKNLRNLSINSYQFIKDKTKTKNENKFTRVENS-NEWNKTNSDIFRRKSMYSSSGRLSVYQDRDRKSSFRERIRSQQRISTGISYKSNEKDEDPDFNNFDASVFVLIANLLQTTSPHVVQNWLSQSTDREKAIMISMI 863
            RHNPHP  VRH+KG L  P  I   ++D    S      F  ++      N    +  V       +   ++ +  LQYFTGL ++ F+E  +P +G       WR  L+ L+  +  F  D+   +        E    ++++T   I    S   S G+    Q RDR     + I                   +PD       V  ++  +LQT   + VQ WL  + +REK +++ +I
Sbjct:   61 RHNPHPSRVRHIKGLLDVP--ICAVNDDGYFASPKYSLQFPPNAFNNKQMNKWKGQVPVNAINVNSRLHPINTVTGLQYFTGLNSYPFREKAVPRVGMVPVTEQWRDELQQLT-KAIGFGTDELAPQKPQAPGVPERPKTQYSETTGRIIPPPSRAMSRGKTGSRQGRDRYFGTLQHIAP-----------------EPDMETM---VLQMLCQILQTEDINAVQAWLCSAGEREKTVVMDLI 280
[Close]
BLAST of SMED30007162 vs. Planmine SMEST
Match: SMESG000081805.1 (SMESG000081805.1)

HSP 1 Score: 303.908 bits (777), Expect = 1.753e-103
Identity = 143/146 (97.95%), Postives = 145/146 (99.32%), Query Frame = 3 
Query:   63 MTAYQNSFFQNKSLEEEFPYRAIIKRDLPQLRHNPHPLYVRHVKGFLGQPTQIVETDEDNVILSQGTVEGFIQDSVKRGVWNYMDSKSFVRKTRDLDEILSLQYFTGLQNFSFKENYLPYLGYREYFSSWRKNLRNLSINSYQFIK 500
            MTAYQNSFFQNKSLEEEFPYRAIIKRDLPQLRHNPHPLYVRHVKGFLGQPTQIVET+EDNVILSQGTVEGFIQD VKRGVWNY+DSKSFVRKTRDLDEILSLQYFTGLQNFSFKENYLPYLGYREYFSSWRKNLRNLSINSYQFIK
Sbjct:    1 MTAYQNSFFQNKSLEEEFPYRAIIKRDLPQLRHNPHPLYVRHVKGFLGQPTQIVETEEDNVILSQGTVEGFIQDCVKRGVWNYIDSKSFVRKTRDLDEILSLQYFTGLQNFSFKENYLPYLGYREYFSSWRKNLRNLSINSYQFIK 146
[Close]
BLAST of SMED30007162 vs. Planmine SMEST
Match: SMESG000081806.1 (SMESG000081806.1)

HSP 1 Score: 154.066 bits (388), Expect = 8.688e-46
Identity = 92/93 (98.92%), Postives = 92/93 (98.92%), Query Frame = 3 
Query:  912 MQTEKETQTSKCNMTAESALRDIKNNSKNGKSAEDKCDILVIDRKLTGESVEDNPNDFRPPTSSTFRPVXXXXXXXXXXXXXXXXATMWSQGE 1190
            MQTEKETQTSKCNMTAESALRDIKNNSKNGKSAEDKCDILVIDRKLTGESVED PNDFRPPTSSTFRPVKTSDRSSSKASKLSSKATMWSQGE
Sbjct:    1 MQTEKETQTSKCNMTAESALRDIKNNSKNGKSAEDKCDILVIDRKLTGESVEDKPNDFRPPTSSTFRPVKTSDRSSSKASKLSSKATMWSQGE 93
[Close]
BLAST of SMED30007162 vs. Planmine SMEST
Match: SMESG000053617.1 (SMESG000053617.1)

HSP 1 Score: 109.768 bits (273), Expect = 1.888e-26
Identity = 103/331 (31.12%), Postives = 158/331 (47.73%), Query Frame = 3 
Query:  153 LRHNPHPLYVRHVKGFLGQPTQIVETDEDN------VILSQGTVEGFIQDSVKRGVWNYMDSKSFVRKTRDLDEILSLQYFTGLQNFSFKENYLPYLGYREYFSSWRKNLRNLSINSY-QFIKDKTKTKNENKFTRVENSNEWNKTNSDIFRRKSMYSSSGRLSVYQDRDRKSSFRERIRSQQRISTGISYKSNEKDEDPDFNNFDASVFVLIANLLQTTSPHVVQNWLSQSTDREKAIMISMIXXXXXXXXXXXXXXGDMQTEKETQ---TSKCNMTAESALRDIKNNSKNGKSAEDKCDILVIDRKLTGESVEDNPNDFRPPTSSTFRP 1115
            ++H+PHP  VRH+K   G P  +V++++ N      +       +     + K  + +  DS +FV     LD I SL YFTGLQ+ SF+      +   +    W K L+N++ ++   F+K+K  +  EN+ T +E   +     S     K MYSSSGR+       R  +  E+ R   R+++  S+ S     D    N D  VF L+  +LQT    V++ WL  +T+REKA+M+ +++  L+++   N+   D     E Q   T   N +  S L  I  NS +     +K D LVI         E  P   RPPTSSTFRP
Sbjct:   25 VQHSPHPNRVRHIKTLFGNPVCVVDSEDGNTNRKYSLHFPPNNYDDVKLKTTKLNLHSNSDSNAFVSARPTLDTINSLNYFTGLQSMSFRNRPNFNMSRVKSLEGWEKQLKNITDSALDPFLKNKCLS--ENQLTMIETGRD-----SISSPMKRMYSSSGRILPIIGISRPLTSPEK-RPNSRLNSSKSFMSEGGSND---INIDLQVFHLLGGILQTNENEVIKTWLLTATEREKALMVDIVRCALVDKEELNIFVRDSIPNGENQIIYTPAKNFS--SKLPVISENSNS-----EKIDQLVIHSD-PQPKFEVPPT--RPPTSSTFRP 334
The following BLAST results are available for this feature:
BLAST of SMED30007162 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007162 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007162 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007162 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007162 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007162 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007162 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007162 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A1S3I2F21.033e-1527.64uncharacterized protein LOC106160400 OS=Lingula un... [more]
A0A1I8JKL91.252e-1327.78Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A1I8H1861.489e-1327.78Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A267H1S72.383e-1327.78Uncharacterized protein OS=Macrostomum lignano OX=... [more]
K1R2A02.440e-1225.10Protein SPATIAL OS=Crassostrea gigas OX=29159 GN=C... [more]
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BLAST of SMED30007162 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007162 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007162 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007162 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007162 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007162 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3
Match NameE-valueIdentityDescription
SMESG000081805.11.753e-10397.95SMESG000081805.1[more]
SMESG000081806.18.688e-4698.92SMESG000081806.1[more]
SMESG000053617.11.888e-2631.12SMESG000053617.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30007162 ID=SMED30007162|Name=SMED30007162|organism=Schmidtea mediterranea sexual|type=transcript|length=1278bp
ATTACTATAAAATTGCTTGTAAATTTTCTGATATTGAATTACTAGAATAG
AATTTTTTTAAGATGACTGCATATCAAAATAGTTTTTTTCAAAATAAGTC
ACTTGAAGAAGAATTTCCTTATAGAGCTATCATCAAGCGAGATTTACCCC
AGCTTCGACATAATCCTCATCCTTTATATGTCAGACATGTGAAGGGTTTT
CTTGGTCAGCCTACACAGATAGTTGAAACTGACGAAGATAATGTTATTCT
TTCGCAAGGAACTGTTGAAGGTTTTATTCAGGACAGTGTAAAAAGAGGAG
TGTGGAACTATATGGATTCCAAAAGCTTTGTAAGAAAAACACGAGATCTC
GATGAAATACTGTCATTACAATATTTTACTGGATTGCAAAATTTTTCTTT
TAAAGAAAATTATCTTCCATATTTAGGATATAGAGAATATTTTAGCAGTT
GGAGAAAAAATTTGAGAAACTTATCAATAAATTCTTACCAGTTTATTAAA
GATAAAACAAAAACCAAAAACGAAAATAAATTTACTCGTGTAGAAAACTC
TAATGAATGGAATAAAACAAATTCAGATATTTTTCGAAGAAAATCAATGT
ACTCATCATCAGGACGCCTATCTGTATATCAAGATCGGGATAGAAAGTCA
TCCTTTCGCGAAAGAATCCGATCTCAACAAAGAATTTCAACTGGAATATC
TTATAAATCAAATGAAAAGGATGAAGATCCAGACTTTAATAATTTTGATG
CATCAGTATTTGTTTTAATTGCAAATCTATTGCAAACTACGTCACCGCAC
GTTGTACAAAATTGGCTTAGTCAGTCTACTGACAGAGAAAAAGCTATAAT
GATATCGATGATACAAAATGTTTTGTTAAATCAAAATTCAAATAATTTGT
CAAACGGCGATATGCAAACAGAAAAAGAAACTCAGACATCAAAATGTAAC
ATGACTGCAGAATCAGCACTGCGAGATATCAAGAATAATAGTAAAAATGG
AAAAAGTGCTGAAGATAAATGCGATATTTTAGTAATTGATAGAAAATTAA
CAGGTGAAAGTGTTGAGGATAACCCTAATGATTTTAGGCCCCCAACTTCA
TCTACATTTAGGCCAGTCAAAACTAGTGACAGGTCAAGCTCAAAAGCTTC
TAAATTAAGTTCTAAAGCAACTATGTGGTCTCAAGGCGAATCTCTAAATT
CATTAAATTAATAATTTCAAAATAACTTCTGATTTGCATGCAGTGATTAT
TTATTTGGTATTTAAAAATGAAGCAGCT
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protein sequence of SMED30007162-orf-1

>SMED30007162-orf-1 ID=SMED30007162-orf-1|Name=SMED30007162-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=383bp
MTAYQNSFFQNKSLEEEFPYRAIIKRDLPQLRHNPHPLYVRHVKGFLGQP
TQIVETDEDNVILSQGTVEGFIQDSVKRGVWNYMDSKSFVRKTRDLDEIL
SLQYFTGLQNFSFKENYLPYLGYREYFSSWRKNLRNLSINSYQFIKDKTK
TKNENKFTRVENSNEWNKTNSDIFRRKSMYSSSGRLSVYQDRDRKSSFRE
RIRSQQRISTGISYKSNEKDEDPDFNNFDASVFVLIANLLQTTSPHVVQN
WLSQSTDREKAIMISMIQNVLLNQNSNNLSNGDMQTEKETQTSKCNMTAE
SALRDIKNNSKNGKSAEDKCDILVIDRKLTGESVEDNPNDFRPPTSSTFR
PVKTSDRSSSKASKLSSKATMWSQGESLNSLN*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000034epidermis
PLANA:0000054dorsal region of the epidermis
PLANA:0000099neuron
PLANA:0000418head
PLANA:0002032epidermal cell