RING-type domain-containing protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30007147 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 8
Homology
BLAST of RING-type domain-containing protein vs. Ensembl Human
Match: RNF41 (ring finger protein 41 [Source:HGNC Symbol;Acc:HGNC:18401]) HSP 1 Score: 66.6254 bits (161), Expect = 9.723e-13 Identity = 31/101 (30.69%), Postives = 51/101 (50.50%), Query Frame = 3 Query: 123 ISEHLICQICQDVFNDP-WCLSCGHTFCRTCVTTWLASNKSCPTDRTKVTLCCKN---FALADIIGDLEISCSWRPYGCGYIGRYYIVKDHIVKCKFNPNK 413 + E LIC IC V +P C H FC C+T W + ++CP DR+ VT+ + +++ L+I+C +GC + R + H+ C+ NP + Sbjct: 12 VDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTVAHLRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKR 112
BLAST of RING-type domain-containing protein vs. Ensembl Human
Match: RNF41 (ring finger protein 41 [Source:HGNC Symbol;Acc:HGNC:18401]) HSP 1 Score: 65.855 bits (159), Expect = 1.211e-12 Identity = 31/101 (30.69%), Postives = 51/101 (50.50%), Query Frame = 3 Query: 123 ISEHLICQICQDVFNDP-WCLSCGHTFCRTCVTTWLASNKSCPTDRTKVTLCCKN---FALADIIGDLEISCSWRPYGCGYIGRYYIVKDHIVKCKFNPNK 413 + E LIC IC V +P C H FC C+T W + ++CP DR+ VT+ + +++ L+I+C +GC + R + H+ C+ NP + Sbjct: 12 VDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTVAHLRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKR 112
BLAST of RING-type domain-containing protein vs. Ensembl Human
Match: PDZRN4 (PDZ domain containing ring finger 4 [Source:HGNC Symbol;Acc:HGNC:30552]) HSP 1 Score: 67.781 bits (164), Expect = 2.255e-12 Identity = 31/102 (30.39%), Postives = 47/102 (46.08%), Query Frame = 3 Query: 135 LICQICQDVFNDPWCLSCGHTFCRTCVTTWLASNKSCPTDRTKVTLCCKNFA---------LADIIGDLEISCSWRPYGCGYIGRYYIVKDHIVKCKFNPNK 413 L C++C V +P C CGH FC +C+ W + CP L C+ A L +I L + C +R GCG+ R + ++ H+ C F P + Sbjct: 16 LECKLCGQVLEEPLCTPCGHVFCASCLLPWAVRRRRCP-------LQCQPLAPGELYRVLPLRSLIQKLRVQCDYRARGCGHSVRLHELEAHVEHCDFGPAR 110
BLAST of RING-type domain-containing protein vs. Ensembl Human
Match: RNF41 (ring finger protein 41 [Source:HGNC Symbol;Acc:HGNC:18401]) HSP 1 Score: 66.2402 bits (160), Expect = 3.580e-12 Identity = 31/101 (30.69%), Postives = 51/101 (50.50%), Query Frame = 3 Query: 123 ISEHLICQICQDVFNDP-WCLSCGHTFCRTCVTTWLASNKSCPTDRTKVTLCCKN---FALADIIGDLEISCSWRPYGCGYIGRYYIVKDHIVKCKFNPNK 413 + E LIC IC V +P C H FC C+T W + ++CP DR+ VT+ + +++ L+I+C +GC + R + H+ C+ NP + Sbjct: 12 VDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTVAHLRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKR 112
BLAST of RING-type domain-containing protein vs. Ensembl Human
Match: RNF41 (ring finger protein 41 [Source:HGNC Symbol;Acc:HGNC:18401]) HSP 1 Score: 66.2402 bits (160), Expect = 3.580e-12 Identity = 31/101 (30.69%), Postives = 51/101 (50.50%), Query Frame = 3 Query: 123 ISEHLICQICQDVFNDP-WCLSCGHTFCRTCVTTWLASNKSCPTDRTKVTLCCKN---FALADIIGDLEISCSWRPYGCGYIGRYYIVKDHIVKCKFNPNK 413 + E LIC IC V +P C H FC C+T W + ++CP DR+ VT+ + +++ L+I+C +GC + R + H+ C+ NP + Sbjct: 12 VDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTVAHLRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKR 112
BLAST of RING-type domain-containing protein vs. Ensembl Fly
Match: elgi (gene:FBgn0283649 transcript:FBtr0075510) HSP 1 Score: 68.9366 bits (167), Expect = 2.133e-13 Identity = 35/105 (33.33%), Postives = 50/105 (47.62%), Query Frame = 3 Query: 120 KISEHLICQICQDVFNDPW-CLSCGHTFCRTCVTTWLASNKSCPTDRTKVT---LCCKNFALADIIGDLEISCSWRPYGCGYIGRYYIVKDHIVKCKFNPNKMDP 422 ++ E L C IC V DP + C H FCR C+ WL +CP DR +T L L +++ L I+C PYGC + + H+ +C NP + P Sbjct: 11 EVDEELTCPICSGVLEDPLQAVMCEHAFCRGCINEWLTRQPTCPVDRNSLTTANLRAVPRILRNLLSRLSITCDNAPYGCTAVLKLDAYNSHLDECIHNPKRPFP 115
BLAST of RING-type domain-containing protein vs. Ensembl Fly
Match: elgi (gene:FBgn0283649 transcript:FBtr0333573) HSP 1 Score: 68.9366 bits (167), Expect = 2.133e-13 Identity = 35/105 (33.33%), Postives = 50/105 (47.62%), Query Frame = 3 Query: 120 KISEHLICQICQDVFNDPW-CLSCGHTFCRTCVTTWLASNKSCPTDRTKVT---LCCKNFALADIIGDLEISCSWRPYGCGYIGRYYIVKDHIVKCKFNPNKMDP 422 ++ E L C IC V DP + C H FCR C+ WL +CP DR +T L L +++ L I+C PYGC + + H+ +C NP + P Sbjct: 11 EVDEELTCPICSGVLEDPLQAVMCEHAFCRGCINEWLTRQPTCPVDRNSLTTANLRAVPRILRNLLSRLSITCDNAPYGCTAVLKLDAYNSHLDECIHNPKRPFP 115
BLAST of RING-type domain-containing protein vs. Ensembl Fly
Match: CG9014 (gene:FBgn0028847 transcript:FBtr0343664) HSP 1 Score: 65.855 bits (159), Expect = 3.114e-12 Identity = 45/164 (27.44%), Postives = 75/164 (45.73%), Query Frame = 3 Query: 123 ISEHLICQICQDVFNDPWCLS-CGHTFCRTCVTTWLASNKSCPTDRTKVT---LCCKNFALADIIGDLEISCSWRPYGCGYIGRYYIVKDHIVKCKFNPNKMDPVMQEKMRHINVDTPPAKKTKQSSSGALDELMSQLDDSIVEDDLTSLPQLEEPSLAARLYM 602 + E LIC IC DV +P S C H FCR C+ W+ + CP DR+ + L + + +++ L+I C++ GC + + H+ C+ NP V+ E + + P + ++ + L EL+ +L V D +EE S + R M Sbjct: 12 VDEELICPICTDVLEEPVQSSECEHAFCRACIDKWMIQKQICPVDRSGLLTSHLVPVSRLMRNMLSRLKIKCTFSQSGCAQMLALEEFRTHVAACEHNPK----VVVECSKGCGMKVPKDEMSRHNCVFELRELVEKLAKE-VSDLKQKQSDMEEQSSSQRREM 170
BLAST of RING-type domain-containing protein vs. Ensembl Fly
Match: CG9014 (gene:FBgn0028847 transcript:FBtr0080579) HSP 1 Score: 65.855 bits (159), Expect = 3.114e-12 Identity = 45/164 (27.44%), Postives = 75/164 (45.73%), Query Frame = 3 Query: 123 ISEHLICQICQDVFNDPWCLS-CGHTFCRTCVTTWLASNKSCPTDRTKVT---LCCKNFALADIIGDLEISCSWRPYGCGYIGRYYIVKDHIVKCKFNPNKMDPVMQEKMRHINVDTPPAKKTKQSSSGALDELMSQLDDSIVEDDLTSLPQLEEPSLAARLYM 602 + E LIC IC DV +P S C H FCR C+ W+ + CP DR+ + L + + +++ L+I C++ GC + + H+ C+ NP V+ E + + P + ++ + L EL+ +L V D +EE S + R M Sbjct: 12 VDEELICPICTDVLEEPVQSSECEHAFCRACIDKWMIQKQICPVDRSGLLTSHLVPVSRLMRNMLSRLKIKCTFSQSGCAQMLALEEFRTHVAACEHNPK----VVVECSKGCGMKVPKDEMSRHNCVFELRELVEKLAKE-VSDLKQKQSDMEEQSSSQRREM 170
BLAST of RING-type domain-containing protein vs. Ensembl Fly
Match: CG13605 (gene:FBgn0039150 transcript:FBtr0300705) HSP 1 Score: 56.225 bits (134), Expect = 8.530e-9 Identity = 22/44 (50.00%), Postives = 26/44 (59.09%), Query Frame = 3 Query: 138 ICQICQDVFNDPWCLSCGHTFCRTCVTTWLASNKSCPTDRTKVT 269 +C IC D FN P L CGH FC CV TW ++CP R KV+ Sbjct: 609 LCPICHDAFNTPTVLECGHIFCDECVQTWFKREQTCPMCRAKVS 652
BLAST of RING-type domain-containing protein vs. Ensembl Zebrafish
Match: traf7 (TNF receptor-associated factor 7 [Source:ZFIN;Acc:ZDB-GENE-070112-2212]) HSP 1 Score: 75.485 bits (184), Expect = 3.634e-15 Identity = 45/129 (34.88%), Postives = 63/129 (48.84%), Query Frame = 3 Query: 66 FQSKSEKFEDKIYFKDPKKISEHLICQICQDVFNDPWCLSCGHTFCRTCVTTWLASNKSCPTDRTKVTLCCKNFALADIIGDLEISCSW--RPYGCGYIGRYYI-------------VKDHIVKCKFNP 407 + E E +++ + P S L CQ+C VF DP +CGHTFCR C T ++ CP D +K+T+ N A+A+ IG+L I C + RP G G Y + KDH V C + P Sbjct: 78 LHEEEEDTEPQVFAEQP---SVKLCCQLCCSVFKDPVITTCGHTFCRRCALT----SEKCPVDNSKLTVVVNNIAVAEQIGELFIHCKYGCRPAASGKSGAYEVDPLGCPFTIKLSTRKDHEVSCDYRP 199
BLAST of RING-type domain-containing protein vs. Ensembl Zebrafish
Match: traf7 (TNF receptor-associated factor 7 [Source:ZFIN;Acc:ZDB-GENE-070112-2212]) HSP 1 Score: 75.485 bits (184), Expect = 3.634e-15 Identity = 45/129 (34.88%), Postives = 63/129 (48.84%), Query Frame = 3 Query: 66 FQSKSEKFEDKIYFKDPKKISEHLICQICQDVFNDPWCLSCGHTFCRTCVTTWLASNKSCPTDRTKVTLCCKNFALADIIGDLEISCSW--RPYGCGYIGRYYI-------------VKDHIVKCKFNP 407 + E E +++ + P S L CQ+C VF DP +CGHTFCR C T ++ CP D +K+T+ N A+A+ IG+L I C + RP G G Y + KDH V C + P Sbjct: 78 LHEEEEDTEPQVFAEQP---SVKLCCQLCCSVFKDPVITTCGHTFCRRCALT----SEKCPVDNSKLTVVVNNIAVAEQIGELFIHCKYGCRPAASGKSGAYEVDPLGCPFTIKLSTRKDHEVSCDYRP 199
BLAST of RING-type domain-containing protein vs. Ensembl Zebrafish
Match: traf7 (TNF receptor-associated factor 7 [Source:ZFIN;Acc:ZDB-GENE-070112-2212]) HSP 1 Score: 75.485 bits (184), Expect = 3.897e-15 Identity = 45/129 (34.88%), Postives = 63/129 (48.84%), Query Frame = 3 Query: 66 FQSKSEKFEDKIYFKDPKKISEHLICQICQDVFNDPWCLSCGHTFCRTCVTTWLASNKSCPTDRTKVTLCCKNFALADIIGDLEISCSW--RPYGCGYIGRYYI-------------VKDHIVKCKFNP 407 + E E +++ + P S L CQ+C VF DP +CGHTFCR C T ++ CP D +K+T+ N A+A+ IG+L I C + RP G G Y + KDH V C + P Sbjct: 104 LHEEEEDTEPQVFAEQP---SVKLCCQLCCSVFKDPVITTCGHTFCRRCALT----SEKCPVDNSKLTVVVNNIAVAEQIGELFIHCKYGCRPAASGKSGAYEVDPLGCPFTIKLSTRKDHEVSCDYRP 225
BLAST of RING-type domain-containing protein vs. Ensembl Zebrafish
Match: rnf41 (ring finger protein 41 [Source:NCBI gene;Acc:406837]) HSP 1 Score: 68.1662 bits (165), Expect = 5.516e-13 Identity = 34/102 (33.33%), Postives = 51/102 (50.00%), Query Frame = 3 Query: 120 KISEHLICQICQDVFNDP-WCLSCGHTFCRTCVTTWLASNKSCPTDRTKVTLCCKN---FALADIIGDLEISCSWRPYGCGYIGRYYIVKDHIVKCKFNPNK 413 ++ E L+C IC V +P C H FC C+T W A + CP DRT VTL + +++ L+ISC +GC R ++ H+ C+ NP + Sbjct: 11 EVDEDLLCPICSGVLEEPVQAPHCEHAFCNACITQWFAQQQICPVDRTVVTLAHLRPVPRIMRNMLSKLQISCDNAGFGCTATLRLDQLQSHLKDCEHNPKR 112
BLAST of RING-type domain-containing protein vs. Ensembl Zebrafish
Match: rnf41 (ring finger protein 41 [Source:NCBI gene;Acc:406837]) HSP 1 Score: 68.1662 bits (165), Expect = 5.516e-13 Identity = 34/102 (33.33%), Postives = 51/102 (50.00%), Query Frame = 3 Query: 120 KISEHLICQICQDVFNDP-WCLSCGHTFCRTCVTTWLASNKSCPTDRTKVTLCCKN---FALADIIGDLEISCSWRPYGCGYIGRYYIVKDHIVKCKFNPNK 413 ++ E L+C IC V +P C H FC C+T W A + CP DRT VTL + +++ L+ISC +GC R ++ H+ C+ NP + Sbjct: 11 EVDEDLLCPICSGVLEEPVQAPHCEHAFCNACITQWFAQQQICPVDRTVVTLAHLRPVPRIMRNMLSKLQISCDNAGFGCTATLRLDQLQSHLKDCEHNPKR 112
BLAST of RING-type domain-containing protein vs. Ensembl Xenopus
Match: traf7 (TNF receptor associated factor 7 [Source:NCBI gene;Acc:100216042]) HSP 1 Score: 69.3218 bits (168), Expect = 5.139e-13 Identity = 41/126 (32.54%), Postives = 59/126 (46.83%), Query Frame = 3 Query: 75 KSEKFEDKIYFKDPKKISEHLICQICQDVFNDPWCLSCGHTFCRTCVTTWLASNKSCPTDRTKVTLCCKNFALADIIGDLEISCSWR---------------PYGCGYIGRYYIVKDHIVKCKFNP 407 + E+ D + F + + L CQ+C VF DP +CGHTFCR C T ++ CP D K+T+ N A+A+ IG+L I C + P GC + + KDH C + P Sbjct: 107 EEEEEPDPLVFAEQPSVK--LCCQLCCSVFKDPVITTCGHTFCRRCALT----SEKCPVDNAKLTVVVNNIAVAEQIGELFIHCKYGCHPSSNGKPVTFEVDPRGCPFTIKLSARKDHEGSCDYRP 226
BLAST of RING-type domain-containing protein vs. Ensembl Xenopus
Match: traf7 (TNF receptor associated factor 7 [Source:NCBI gene;Acc:100216042]) HSP 1 Score: 69.3218 bits (168), Expect = 5.323e-13 Identity = 41/126 (32.54%), Postives = 59/126 (46.83%), Query Frame = 3 Query: 75 KSEKFEDKIYFKDPKKISEHLICQICQDVFNDPWCLSCGHTFCRTCVTTWLASNKSCPTDRTKVTLCCKNFALADIIGDLEISCSWR---------------PYGCGYIGRYYIVKDHIVKCKFNP 407 + E+ D + F + + L CQ+C VF DP +CGHTFCR C T ++ CP D K+T+ N A+A+ IG+L I C + P GC + + KDH C + P Sbjct: 123 EEEEEPDPLVFAEQPSVK--LCCQLCCSVFKDPVITTCGHTFCRRCALT----SEKCPVDNAKLTVVVNNIAVAEQIGELFIHCKYGCHPSSNGKPVTFEVDPRGCPFTIKLSARKDHEGSCDYRP 242
BLAST of RING-type domain-containing protein vs. Ensembl Xenopus
Match: traf7 (TNF receptor associated factor 7 [Source:NCBI gene;Acc:100216042]) HSP 1 Score: 69.3218 bits (168), Expect = 5.967e-13 Identity = 41/126 (32.54%), Postives = 59/126 (46.83%), Query Frame = 3 Query: 75 KSEKFEDKIYFKDPKKISEHLICQICQDVFNDPWCLSCGHTFCRTCVTTWLASNKSCPTDRTKVTLCCKNFALADIIGDLEISCSWR---------------PYGCGYIGRYYIVKDHIVKCKFNP 407 + E+ D + F + + L CQ+C VF DP +CGHTFCR C T ++ CP D K+T+ N A+A+ IG+L I C + P GC + + KDH C + P Sbjct: 107 EEEEEPDPLVFAEQPSVK--LCCQLCCSVFKDPVITTCGHTFCRRCALT----SEKCPVDNAKLTVVVNNIAVAEQIGELFIHCKYGCHPSSNGKPVTFEVDPRGCPFTIKLSARKDHEGSCDYRP 226
BLAST of RING-type domain-containing protein vs. Ensembl Xenopus
Match: traf7 (TNF receptor associated factor 7 [Source:NCBI gene;Acc:100216042]) HSP 1 Score: 68.9366 bits (167), Expect = 7.109e-13 Identity = 41/126 (32.54%), Postives = 59/126 (46.83%), Query Frame = 3 Query: 75 KSEKFEDKIYFKDPKKISEHLICQICQDVFNDPWCLSCGHTFCRTCVTTWLASNKSCPTDRTKVTLCCKNFALADIIGDLEISCSWR---------------PYGCGYIGRYYIVKDHIVKCKFNP 407 + E+ D + F + + L CQ+C VF DP +CGHTFCR C T ++ CP D K+T+ N A+A+ IG+L I C + P GC + + KDH C + P Sbjct: 101 EEEEEPDPLVFAEQPSVK--LCCQLCCSVFKDPVITTCGHTFCRRCALT----SEKCPVDNAKLTVVVNNIAVAEQIGELFIHCKYGCHPSSNGKPVTFEVDPRGCPFTIKLSARKDHEGSCDYRP 220
BLAST of RING-type domain-containing protein vs. Ensembl Xenopus
Match: traf7 (TNF receptor associated factor 7 [Source:NCBI gene;Acc:100216042]) HSP 1 Score: 68.9366 bits (167), Expect = 7.238e-13 Identity = 41/126 (32.54%), Postives = 59/126 (46.83%), Query Frame = 3 Query: 75 KSEKFEDKIYFKDPKKISEHLICQICQDVFNDPWCLSCGHTFCRTCVTTWLASNKSCPTDRTKVTLCCKNFALADIIGDLEISCSWR---------------PYGCGYIGRYYIVKDHIVKCKFNP 407 + E+ D + F + + L CQ+C VF DP +CGHTFCR C T ++ CP D K+T+ N A+A+ IG+L I C + P GC + + KDH C + P Sbjct: 48 EEEEEPDPLVFAEQPSVK--LCCQLCCSVFKDPVITTCGHTFCRRCALT----SEKCPVDNAKLTVVVNNIAVAEQIGELFIHCKYGCHPSSNGKPVTFEVDPRGCPFTIKLSARKDHEGSCDYRP 167
BLAST of RING-type domain-containing protein vs. Ensembl Mouse
Match: Traf7 (TNF receptor-associated factor 7 [Source:MGI Symbol;Acc:MGI:3042141]) HSP 1 Score: 69.707 bits (169), Expect = 1.145e-13 Identity = 48/148 (32.43%), Postives = 67/148 (45.27%), Query Frame = 3 Query: 21 ATIKKNRKKQVSSDLF----QSKSEKFEDKIYFKDPKKISEHLICQICQDVFNDPWCLSCGHTFCRTCVTTWLASNKSCPTDRTKVTLCCKNFALADIIGDLEISCSWR---------------PYGCGYIGRYYIVKDHIVKCKFNP 407 T K++R+ SS + + + E ++ + P S L CQ+C VF DP +CGHTFCR C L S K CP D K+T+ N A+A+ IG+L I C P GC + + KDH C + P Sbjct: 50 GTYKQHRRTPSSSSTLAYSPRDEEDGMEPLVFAEQP---SVKLCCQLCCSVFKDPVITTCGHTFCRRCA---LKSEK-CPVDNAKLTVVVNNIAVAEQIGELFIHCRHGCHAAGTGKPGVFEVDPRGCPFTIKLSARKDHESSCDYRP 190
BLAST of RING-type domain-containing protein vs. Ensembl Mouse
Match: Traf7 (TNF receptor-associated factor 7 [Source:MGI Symbol;Acc:MGI:3042141]) HSP 1 Score: 68.9366 bits (167), Expect = 5.555e-13 Identity = 48/148 (32.43%), Postives = 67/148 (45.27%), Query Frame = 3 Query: 21 ATIKKNRKKQVSSDLF----QSKSEKFEDKIYFKDPKKISEHLICQICQDVFNDPWCLSCGHTFCRTCVTTWLASNKSCPTDRTKVTLCCKNFALADIIGDLEISCSWR---------------PYGCGYIGRYYIVKDHIVKCKFNP 407 T K++R+ SS + + + E ++ + P S L CQ+C VF DP +CGHTFCR C L S K CP D K+T+ N A+A+ IG+L I C P GC + + KDH C + P Sbjct: 51 GTYKQHRRTPSSSSTLAYSPRDEEDGMEPLVFAEQP---SVKLCCQLCCSVFKDPVITTCGHTFCRRCA---LKSEK-CPVDNAKLTVVVNNIAVAEQIGELFIHCRHGCHAAGTGKPGVFEVDPRGCPFTIKLSARKDHESSCDYRP 191
BLAST of RING-type domain-containing protein vs. Ensembl Mouse
Match: Traf7 (TNF receptor-associated factor 7 [Source:MGI Symbol;Acc:MGI:3042141]) HSP 1 Score: 68.9366 bits (167), Expect = 5.555e-13 Identity = 48/148 (32.43%), Postives = 67/148 (45.27%), Query Frame = 3 Query: 21 ATIKKNRKKQVSSDLF----QSKSEKFEDKIYFKDPKKISEHLICQICQDVFNDPWCLSCGHTFCRTCVTTWLASNKSCPTDRTKVTLCCKNFALADIIGDLEISCSWR---------------PYGCGYIGRYYIVKDHIVKCKFNP 407 T K++R+ SS + + + E ++ + P S L CQ+C VF DP +CGHTFCR C L S K CP D K+T+ N A+A+ IG+L I C P GC + + KDH C + P Sbjct: 51 GTYKQHRRTPSSSSTLAYSPRDEEDGMEPLVFAEQP---SVKLCCQLCCSVFKDPVITTCGHTFCRRCA---LKSEK-CPVDNAKLTVVVNNIAVAEQIGELFIHCRHGCHAAGTGKPGVFEVDPRGCPFTIKLSARKDHESSCDYRP 191
BLAST of RING-type domain-containing protein vs. Ensembl Mouse
Match: Rnf41 (ring finger protein 41 [Source:MGI Symbol;Acc:MGI:1914838]) HSP 1 Score: 66.2402 bits (160), Expect = 2.758e-12 Identity = 31/101 (30.69%), Postives = 51/101 (50.50%), Query Frame = 3 Query: 123 ISEHLICQICQDVFNDP-WCLSCGHTFCRTCVTTWLASNKSCPTDRTKVTLCCKN---FALADIIGDLEISCSWRPYGCGYIGRYYIVKDHIVKCKFNPNK 413 + E LIC IC V +P C H FC C+T W + ++CP DR+ VT+ + +++ L+I+C +GC + R + H+ C+ NP + Sbjct: 12 VDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTVAHLRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKR 112
BLAST of RING-type domain-containing protein vs. Ensembl Mouse
Match: Rnf41 (ring finger protein 41 [Source:MGI Symbol;Acc:MGI:1914838]) HSP 1 Score: 66.2402 bits (160), Expect = 2.758e-12 Identity = 31/101 (30.69%), Postives = 51/101 (50.50%), Query Frame = 3 Query: 123 ISEHLICQICQDVFNDP-WCLSCGHTFCRTCVTTWLASNKSCPTDRTKVTLCCKN---FALADIIGDLEISCSWRPYGCGYIGRYYIVKDHIVKCKFNPNK 413 + E LIC IC V +P C H FC C+T W + ++CP DR+ VT+ + +++ L+I+C +GC + R + H+ C+ NP + Sbjct: 12 VDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTVAHLRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKR 112
BLAST of RING-type domain-containing protein vs. UniProt/SwissProt
Match: sp|Q7ZW16|RNF41_DANRE (E3 ubiquitin-protein ligase NRDP1 OS=Danio rerio OX=7955 GN=rnf41 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 5.148e-12 Identity = 34/102 (33.33%), Postives = 51/102 (50.00%), Query Frame = 3 Query: 120 KISEHLICQICQDVFNDP-WCLSCGHTFCRTCVTTWLASNKSCPTDRTKVTLCCKN---FALADIIGDLEISCSWRPYGCGYIGRYYIVKDHIVKCKFNPNK 413 ++ E L+C IC V +P C H FC C+T W A + CP DRT VTL + +++ L+ISC +GC R ++ H+ C+ NP + Sbjct: 11 EVDEDLLCPICSGVLEEPVRAPHCEHAFCNACITQWFAQQQICPVDRTVVTLAHLRPVPRIMRNMLSKLQISCDNAGFGCTATLRLDQLQSHLKDCEHNPKR 112
BLAST of RING-type domain-containing protein vs. UniProt/SwissProt
Match: sp|Q6ZMN7|PZRN4_HUMAN (PDZ domain-containing RING finger protein 4 OS=Homo sapiens OX=9606 GN=PDZRN4 PE=2 SV=3) HSP 1 Score: 67.781 bits (164), Expect = 1.083e-11 Identity = 31/102 (30.39%), Postives = 47/102 (46.08%), Query Frame = 3 Query: 135 LICQICQDVFNDPWCLSCGHTFCRTCVTTWLASNKSCPTDRTKVTLCCKNFA---------LADIIGDLEISCSWRPYGCGYIGRYYIVKDHIVKCKFNPNK 413 L C++C V +P C CGH FC +C+ W + CP L C+ A L +I L + C +R GCG+ R + ++ H+ C F P + Sbjct: 16 LECKLCGQVLEEPLCTPCGHVFCASCLLPWAVRRRRCP-------LQCQPLAPGELYRVLPLRSLIQKLRVQCDYRARGCGHSVRLHELEAHVEHCDFGPAR 110
BLAST of RING-type domain-containing protein vs. UniProt/SwissProt
Match: sp|Q5R7T5|RNF41_PONAB (E3 ubiquitin-protein ligase NRDP1 OS=Pongo abelii OX=9601 GN=RNF41 PE=2 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 1.719e-11 Identity = 31/101 (30.69%), Postives = 51/101 (50.50%), Query Frame = 3 Query: 123 ISEHLICQICQDVFNDP-WCLSCGHTFCRTCVTTWLASNKSCPTDRTKVTLCCKN---FALADIIGDLEISCSWRPYGCGYIGRYYIVKDHIVKCKFNPNK 413 + E LIC IC V +P C H FC C+T W + ++CP DR+ VT+ + +++ L+I+C +GC + R + H+ C+ NP + Sbjct: 12 VDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTVAHLRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKR 112
BLAST of RING-type domain-containing protein vs. UniProt/SwissProt
Match: sp|Q9H4P4|RNF41_HUMAN (E3 ubiquitin-protein ligase NRDP1 OS=Homo sapiens OX=9606 GN=RNF41 PE=1 SV=2) HSP 1 Score: 66.2402 bits (160), Expect = 1.719e-11 Identity = 31/101 (30.69%), Postives = 51/101 (50.50%), Query Frame = 3 Query: 123 ISEHLICQICQDVFNDP-WCLSCGHTFCRTCVTTWLASNKSCPTDRTKVTLCCKN---FALADIIGDLEISCSWRPYGCGYIGRYYIVKDHIVKCKFNPNK 413 + E LIC IC V +P C H FC C+T W + ++CP DR+ VT+ + +++ L+I+C +GC + R + H+ C+ NP + Sbjct: 12 VDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTVAHLRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKR 112
BLAST of RING-type domain-containing protein vs. UniProt/SwissProt
Match: sp|Q8BH75|RNF41_MOUSE (E3 ubiquitin-protein ligase NRDP1 OS=Mus musculus OX=10090 GN=Rnf41 PE=1 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 1.929e-11 Identity = 31/101 (30.69%), Postives = 51/101 (50.50%), Query Frame = 3 Query: 123 ISEHLICQICQDVFNDP-WCLSCGHTFCRTCVTTWLASNKSCPTDRTKVTLCCKN---FALADIIGDLEISCSWRPYGCGYIGRYYIVKDHIVKCKFNPNK 413 + E LIC IC V +P C H FC C+T W + ++CP DR+ VT+ + +++ L+I+C +GC + R + H+ C+ NP + Sbjct: 12 VDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTVAHLRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKR 112
BLAST of RING-type domain-containing protein vs. TrEMBL
Match: A0A2G8LB09 (RING-type domain-containing protein OS=Stichopus japonicus OX=307972 GN=BSL78_05687 PE=4 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 2.564e-29 Identity = 65/191 (34.03%), Postives = 99/191 (51.83%), Query Frame = 3 Query: 33 KNRKKQVSSDLFQSKSEKFEDKIYFKDPKKISEHLICQICQDVFNDPWCLSCGHTFCRTCVTTWLASNKSCPTDRTKVTL--CCKNFALADIIGDLEISCSWRPYGCGYIGRYYIVKDHIVKCKFNPNKMDPVMQEKMRHINVDTPPAKKTKQSSSGALDELMSQLDDSIVEDDLTSLPQLEEPSLAARLY 599 + R K+ D +K + E+ YF +P +S HL C +CQ+VF DP CGH+FCR C+ WL +K+CP DR V + +F +A+IIGD ++CS+R GC +IG+ ++K H C FNP + + H P++ S S ++S ++ D LP +PSL RL+ Sbjct: 6 RRRTKRSRDDSTSTKVIEDEEDRYFLNPDSVSRHLFCSVCQEVFKDPQRAPCGHSFCRMCILRWLKQSKTCPEDRRPVRVQDLHTDFIVANIIGDQMVACSFRGKGCEFIGKLELLKCHTKNCDFNPANLPEFLANDDNH---QIQPSRDKSFSES-----VLSPINAPTCSSDPDKLPTPAKPSLKMRLF 188
BLAST of RING-type domain-containing protein vs. TrEMBL
Match: C3YTN8 (RING-type domain-containing protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_118249 PE=4 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 9.449e-29 Identity = 68/208 (32.69%), Postives = 111/208 (53.37%), Query Frame = 3 Query: 45 KQVSSDLFQSKSEKFEDKIYFKDPKKISEHLICQICQDVFNDPWCLSCGHTFCRTCVTTWLASNKSCPTDRTKVTL--CCKNFALADIIGDLEISCSWRPYGCGYIGRYYIVKDHIVKCKFNPNKMDPVMQEKMRHINVDTPPAKKTKQSSSGALDELMSQLDDSIVEDDLTSLPQLEEPSLAARLYMINETKDTLVRFLSEKISFPK 662 K+ D + S + E++ YF +P+ +SEHL C ICQDVF +P CGH++C+ C+ WL ++K+CP DR V +F LA+IIGD ++C +R GC +IG+ ++ H C FNP + + E+ P + +++ ++D S L DD LP +PSL RL+ ++ L++ + +K + PK Sbjct: 4 KRKRGDEGFADSNEGEEERYFLNPESVSEHLYCSICQDVFKEPQRAPCGHSYCKQCIMAWLRTSKTCPEDRRPVREKDLHYDFILANIIGDHMVACPFRKLGCEFIGKLELLTSHRKSCCFNPANLPEFLLEE--------PQSSTAAAATASSVDTSSSFL---CTSDDENKLPSPPKPSLKMRLFKNGASQRDLLKNMFDKENRPK 200
BLAST of RING-type domain-containing protein vs. TrEMBL
Match: A0A2G8JHQ6 (RING-type domain-containing protein OS=Stichopus japonicus OX=307972 GN=BSL78_27924 PE=4 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 1.128e-28 Identity = 62/172 (36.05%), Postives = 91/172 (52.91%), Query Frame = 3 Query: 90 EDKIYFKDPKKISEHLICQICQDVFNDPWCLSCGHTFCRTCVTTWLASNKSCPTDRTKVTL--CCKNFALADIIGDLEISCSWRPYGCGYIGRYYIVKDHIVKCKFNPNKMDPVMQEKMRHINVDTPPAKKTKQSSSGALDELMSQLDDSIVEDDLTSLPQLEEPSLAARLY 599 E+ YF +P +S HL C +CQ+VF DP CGH+FCR C+ WL +K+CP DR V + +F +A+IIGD ++CS+R GC +IG+ ++K H C FNP + + H P+K S S ++S ++ D LP +PSL RL+ Sbjct: 25 EEDRYFLNPDSVSRHLFCSVCQEVFKDPQRAPCGHSFCRMCILRWLKQSKTCPEDRRPVRVQDLHTDFIVANIIGDQMVACSFRGKGCEFIGKLELLKCHTKNCDFNPANLPEFLANDDNH---QIQPSKDKSFSES-----VLSPINAPTCSSDPDKLPTPAKPSLKMRLF 188
BLAST of RING-type domain-containing protein vs. TrEMBL
Match: A0A0R3SBF4 (RING-type domain-containing protein OS=Hymenolepis diminuta OX=6216 GN=HDID_LOCUS1800 PE=4 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 2.858e-28 Identity = 72/229 (31.44%), Postives = 110/229 (48.03%), Query Frame = 3 Query: 36 NRKKQVSSDLFQSKSEKFEDKIYFKDPKKISEHLICQICQDVFNDPWCLSCGHTFCRTCVTTWLASNKSCPTDRTKVTL--CCKNFALADIIGDLEISCSWRPYGCGYIGRYYIVKDHIVKCKFNPNKMDPVMQEKMRHINVDTPPAKKTKQSSSGA-------------------LDELMSQLDDSIVEDDLTSLPQLEEPSLAARLYM-INE-TKDTLVRFLSEKIS 653 +R++ + S S +++ F P KIS HL C IC +VF +P+ CGH++C C+T W+ + K CP DR ++L +F L IIGD ++C WR GC Y+G + H C NP+ + V++ + + + KQ +SG L E + LDD+I +D+ LP PSL RL+ NE ++D L FL +S Sbjct: 14 SRREAGNCQDHSSNSSTEQEERRFARPDKISPHLFCVICSEVFKNPYRAPCGHSYCYMCITKWMETAKICPVDRKCISLKQMHHDFILESIIGDYTVACPWRASGCSYVGPLCQLDSHKKVCVMNPDLLPEVLRAREK---------ESIKQRNSGGSMPSTSSSFPPPVSISSHDLSESLDGLDDTINDDEEGHLPPAPPPSLVMRLFQNANESSRDLLCNFLGGSLS 233
BLAST of RING-type domain-containing protein vs. TrEMBL
Match: A0A210PF94 (E3 ubiquitin-protein ligase PDZRN3 OS=Mizuhopecten yessoensis OX=6573 GN=KP79_PYT05403 PE=4 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 2.065e-27 Identity = 58/182 (31.87%), Postives = 95/182 (52.20%), Query Frame = 3 Query: 90 EDKIYFKDPKKISEHLICQICQDVFNDPWCLSCGHTFCRTCVTTWLASNKSCPTDRTKVTL--CCKNFALADIIGDLEISCSWRPYGCGYIGRYYIVKDHIVKCKFNPNKMDPVMQEKMRHINVDTPPAKKTKQSSSGALDELMSQLDDSIVEDDLTSLPQLEEPSLAARLYMINETKDTLV 629 E++ YF +P +S HL C ICQDVF+DP CGH+FC+ C+ WL ++K+CP DR + + +F L +IIGD ++C +R GC ++G+ + H +C FNP + +++ + P + T+ SG + DL +P +PSL RL+ + + L+ Sbjct: 18 EEERYFLNPDSVSTHLYCSICQDVFSDPQRAPCGHSFCKKCILPWLKNSKTCPEDRKTLHIGHLHHDFILENIIGDQMVACPFRRLGCEFVGQLQSLNSHKKRCDFNPENLPEFIKK--------STPVENTRGQHSG-------------ITTDLEVVPSPGKPSLMMRLFRAGDDQKKLL 178
BLAST of RING-type domain-containing protein vs. Ensembl Cavefish
Match: traf7 (TNF receptor associated factor 7 [Source:NCBI gene;Acc:103038327]) HSP 1 Score: 71.633 bits (174), Expect = 5.247e-14 Identity = 41/129 (31.78%), Postives = 61/129 (47.29%), Query Frame = 3 Query: 66 FQSKSEKFEDKIYFKDPKKISEHLICQICQDVFNDPWCLSCGHTFCRTCVTTWLASNKSCPTDRTKVTLCCKNFALADIIGDLEISCSWR---------------PYGCGYIGRYYIVKDHIVKCKFNP 407 + E E +++ + P S L CQ+C VF DP +CGHTFCR C T ++ CP D +K+T+ N A+A+ IG+L + C + P GC + + KDH C + P Sbjct: 127 LHEEEEDTEPQVFAEQP---SVKLCCQLCCSVFKDPVITTCGHTFCRRCALT----SEKCPVDNSKLTVVVNNIAVAEQIGELFVHCKYGCRPSASGKPGAFEVDPLGCPFTIKLSTRKDHEGSCDYRP 248
BLAST of RING-type domain-containing protein vs. Ensembl Cavefish
Match: traf7 (TNF receptor associated factor 7 [Source:NCBI gene;Acc:103038327]) HSP 1 Score: 71.633 bits (174), Expect = 6.308e-14 Identity = 41/129 (31.78%), Postives = 61/129 (47.29%), Query Frame = 3 Query: 66 FQSKSEKFEDKIYFKDPKKISEHLICQICQDVFNDPWCLSCGHTFCRTCVTTWLASNKSCPTDRTKVTLCCKNFALADIIGDLEISCSWR---------------PYGCGYIGRYYIVKDHIVKCKFNP 407 + E E +++ + P S L CQ+C VF DP +CGHTFCR C T ++ CP D +K+T+ N A+A+ IG+L + C + P GC + + KDH C + P Sbjct: 33 LHEEEEDTEPQVFAEQP---SVKLCCQLCCSVFKDPVITTCGHTFCRRCALT----SEKCPVDNSKLTVVVNNIAVAEQIGELFVHCKYGCRPSASGKPGAFEVDPLGCPFTIKLSTRKDHEGSCDYRP 154
BLAST of RING-type domain-containing protein vs. Ensembl Cavefish
Match: traf7 (TNF receptor associated factor 7 [Source:NCBI gene;Acc:103038327]) HSP 1 Score: 71.633 bits (174), Expect = 6.352e-14 Identity = 41/129 (31.78%), Postives = 61/129 (47.29%), Query Frame = 3 Query: 66 FQSKSEKFEDKIYFKDPKKISEHLICQICQDVFNDPWCLSCGHTFCRTCVTTWLASNKSCPTDRTKVTLCCKNFALADIIGDLEISCSWR---------------PYGCGYIGRYYIVKDHIVKCKFNP 407 + E E +++ + P S L CQ+C VF DP +CGHTFCR C T ++ CP D +K+T+ N A+A+ IG+L + C + P GC + + KDH C + P Sbjct: 77 LHEEEEDTEPQVFAEQP---SVKLCCQLCCSVFKDPVITTCGHTFCRRCALT----SEKCPVDNSKLTVVVNNIAVAEQIGELFVHCKYGCRPSASGKPGAFEVDPLGCPFTIKLSTRKDHEGSCDYRP 198
BLAST of RING-type domain-containing protein vs. Ensembl Cavefish
Match: traf7 (TNF receptor associated factor 7 [Source:NCBI gene;Acc:103038327]) HSP 1 Score: 70.8626 bits (172), Expect = 1.095e-13 Identity = 40/124 (32.26%), Postives = 60/124 (48.39%), Query Frame = 3 Query: 81 EKFEDKIYFKDPKKISEHLICQICQDVFNDPWCLSCGHTFCRTCVTTWLASNKSCPTDRTKVTLCCKNFALADIIGDLEISCSWR---------------PYGCGYIGRYYIVKDHIVKCKFNP 407 + E +++ + P S L CQ+C VF DP +CGHTFCR C T ++ CP D +K+T+ N A+A+ IG+L + C + P GC + + KDH C + P Sbjct: 50 DGMEPQVFAEQP---SVKLCCQLCCSVFKDPVITTCGHTFCRRCALT----SEKCPVDNSKLTVVVNNIAVAEQIGELFVHCKYGCRPSASGKPGAFEVDPLGCPFTIKLSTRKDHEGSCDYRP 166
BLAST of RING-type domain-containing protein vs. Ensembl Cavefish
Match: rnf41 (ring finger protein 41 [Source:NCBI gene;Acc:103035049]) HSP 1 Score: 68.1662 bits (165), Expect = 1.145e-13 Identity = 34/102 (33.33%), Postives = 51/102 (50.00%), Query Frame = 3 Query: 120 KISEHLICQICQDVFNDP-WCLSCGHTFCRTCVTTWLASNKSCPTDRTKVTLCCKN---FALADIIGDLEISCSWRPYGCGYIGRYYIVKDHIVKCKFNPNK 413 ++ E L+C IC V +P C H FC C+T W A + CP DRT VTL + +++ L+ISC +GC R ++ H+ C+ NP + Sbjct: 11 EVDEDLLCPICSGVLEEPVQAPHCEHAFCNACITQWFAQQQICPVDRTVVTLAHLRPVPRIMRNMLSKLQISCDNAGFGCTATLRLDQLQSHLKDCEHNPKR 112
BLAST of RING-type domain-containing protein vs. Ensembl Sea Lamprey
Match: rnf41l (ring finger protein 41, like [Source:ZFIN;Acc:ZDB-GENE-030131-9441]) HSP 1 Score: 55.4546 bits (132), Expect = 2.891e-10 Identity = 28/100 (28.00%), Postives = 46/100 (46.00%), Query Frame = 3 Query: 120 KISEHLICQICQDVFNDPWCLSCGHTFCRTCVTTWLASNKSCPTDRTKV---TLCCKNFALADIIGDLEISCSWRPYGCGYIGRYYIVKDHIVKCKFNPN 410 ++ + L+C +C+DV DP C H FC C+ WL N +CP DR + L + + + L + C+ R GC + + H +C + P Sbjct: 11 RVKDGLLCCVCRDVLEDPLQAPCEHAFCSACIHGWLVHNHTCPEDRQPLDASELRPLFRYMRNDLNALRLHCTHRARGCEGVCALETIAIHEQQCPYTPT 110
BLAST of RING-type domain-containing protein vs. Ensembl Sea Lamprey
Match: rnf41 (ring finger protein 41 [Source:NCBI gene;Acc:406837]) HSP 1 Score: 50.0618 bits (118), Expect = 1.520e-7 Identity = 33/102 (32.35%), Postives = 46/102 (45.10%), Query Frame = 3 Query: 123 ISEHLICQICQDVFNDPWCLSCGHT-FCRTCVTT-WLASNKSCPTDRTKVT---LCCKNFALADIIGDLEISCSWRPYGCGYIGRYYIVKDHIVKCKFNPNK 413 + E LIC IC V +P L H C CV T WL ++CP DR+ VT L + +++ L I C P GC + R ++ H V+ K Sbjct: 12 VDEELICPICSGVLEEP--LQAPHMDHCTACVITQWLLRQQTCPVDRSVVTPAHLKPVPRIMRNMLSKLTIRCENAPSGCTAMLRLDLLASHAVRSSRAAGK 111
BLAST of RING-type domain-containing protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000008283.1 (pep scaffold:Pmarinus_7.0:GL492550:1249:4726:-1 gene:ENSPMAG00000007497.1 transcript:ENSPMAT00000008283.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 48.521 bits (114), Expect = 6.025e-7 Identity = 27/82 (32.93%), Postives = 39/82 (47.56%), Query Frame = 3 Query: 69 QSKSEKFEDKIYFKDPKKISEHLICQICQDVFNDPWCLSCGHTFCRTCVTTWLASNKSCPTDRTKVTLCCKNFALADIIGDL 314 Q K+EK + F++ + L C IC ++F LSC HTFCR C+ WL + CP R T + L + I + Sbjct: 325 QEKTEKKQVICSFEN--VMENELQCIICSELFIQATTLSCAHTFCRNCIEEWLKQKELCPICRASPTSSTPSLVLDNCIARM 404
BLAST of RING-type domain-containing protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000008284.1 (pep scaffold:Pmarinus_7.0:GL492550:1249:4726:-1 gene:ENSPMAG00000007497.1 transcript:ENSPMAT00000008284.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 48.521 bits (114), Expect = 6.186e-7 Identity = 27/82 (32.93%), Postives = 39/82 (47.56%), Query Frame = 3 Query: 69 QSKSEKFEDKIYFKDPKKISEHLICQICQDVFNDPWCLSCGHTFCRTCVTTWLASNKSCPTDRTKVTLCCKNFALADIIGDL 314 Q K+EK + F++ + L C IC ++F LSC HTFCR C+ WL + CP R T + L + I + Sbjct: 324 QEKTEKKQVICSFEN--VMENELQCIICSELFIQATTLSCAHTFCRNCIEEWLKQKELCPICRASPTSSTPSLVLDNCIARM 403
BLAST of RING-type domain-containing protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000001651.1 (pep scaffold:Pmarinus_7.0:GL478037:21275:40632:1 gene:ENSPMAG00000001486.1 transcript:ENSPMAT00000001651.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 47.3654 bits (111), Expect = 1.342e-6 Identity = 26/77 (33.77%), Postives = 38/77 (49.35%), Query Frame = 3 Query: 117 KKISEHLICQICQDVFNDPWCLSCGHTFCRTCVTT-WLASNK-----SCPTDRTKVT---LCCKNFALADIIGDLEI 320 K++ E L C +C + F +P L CGH FC+ C+ W A SCP R + L KN LA+++ L + Sbjct: 6 KQLGEELTCVVCMEEFAEPVTLGCGHNFCQGCIERCWEAEEGAGAPPSCPQCRRRFAARPLLQKNTVLANVVKQLSL 82
BLAST of RING-type domain-containing protein vs. Ensembl Yeast
Match: PSH1 (E3 ubiquitin ligase targeting centromere-binding protein Cse4p; mediates polyubiquitination and degradation of histone H3 variant Cse4p, preventing its mislocalization to euchromatin independent of Slx5p; ubiquitination of Cse4p may be antagonized by Scm3p [Source:SGD;Acc:S000005415]) HSP 1 Score: 48.521 bits (114), Expect = 3.107e-7 Identity = 23/54 (42.59%), Postives = 29/54 (53.70%), Query Frame = 3 Query: 120 KISEHLICQICQDVFNDPWCLSCGHTFCRTCVTTWLASNK----SCPTDRTKVT 269 KI E L+C IC D P CGH +C C+ TW ASN +CP R+ +T Sbjct: 23 KIIESLVCSICHDYMFVPMMTPCGHNYCYGCLNTWFASNTQKELACPQCRSDIT 76
BLAST of RING-type domain-containing protein vs. Ensembl Nematostella
Match: EDO48004 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RKK9]) HSP 1 Score: 65.0846 bits (157), Expect = 3.205e-12 Identity = 42/111 (37.84%), Postives = 56/111 (50.45%), Query Frame = 3 Query: 81 EKFEDKIYFKDPKKISEHLICQICQDVFNDPWCLSCGHTFCRTCVTTWLASNKSCPTDRTKVTLCCKNFALADIIGDLEISCSWRPYGCGYIGRYYIVKDHIVKCKFNPNK 413 E+ E+ I F D K S L C +C+ VF DP SCGHTFC+ C+ + CP D K+++ N A+A+ IG+L I C YGC V +H V P K Sbjct: 115 EEEEEIILFVD--KPSPKLFCPLCRRVFKDPVITSCGHTFCQACIMA--RGVEKCPLDDNKLSIVVANLAVAEQIGELYIHC---KYGCRIRANGGGVVEHEVDSSGCPMK 218
BLAST of RING-type domain-containing protein vs. Ensembl Nematostella
Match: EDO49523 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RGH1]) HSP 1 Score: 63.929 bits (154), Expect = 4.568e-12 Identity = 34/102 (33.33%), Postives = 50/102 (49.02%), Query Frame = 3 Query: 120 KISEHLICQICQDVFNDPW-CLSCGHTFCRTCVTTWLASNKSCPTDRTKVT-LCCKNFA--LADIIGDLEISCSWRPYGCGYIGRYYIVKDHIVKCKFNPNK 413 ++ E L+C IC V DP C H FC C+ WL +CP DR +T L K L +++ L ISC +GC + R ++ H+ +C NP + Sbjct: 11 EVDEELVCSICGGVLEDPLQAPVCEHAFCAGCIHEWLNHQNNCPIDRRTLTPLQLKQVPRILKNLLSKLVISCDNVTFGCEVMVRLDGLQSHLAQCDHNPKR 112
BLAST of RING-type domain-containing protein vs. Ensembl Nematostella
Match: EDO34728 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SNG3]) HSP 1 Score: 61.2326 bits (147), Expect = 7.384e-12 Identity = 34/100 (34.00%), Postives = 49/100 (49.00%), Query Frame = 3 Query: 123 ISEHLICQICQDVFNDPWCLSCGHTFCRTCVTTWLASNKSCPTDRTKVTLCCKNFA-----LADIIGDLEISCSWRPYGCGYIGRYYIVKDHIVKCKFNP 407 +S L+C IC V DP C H FC C++ WL +N +CPT R++V KN + +II L+I C ++ GC I ++ H C P Sbjct: 11 VSPELVCCICTGVLEDPVESPCRHVFCSECISKWLQNNSNCPTCRSQVRA--KNLKPVLPLVRNIISKLKIHCDFKTQGCKAIVSLESLRRHATICVMAP 108
BLAST of RING-type domain-containing protein vs. Ensembl Nematostella
Match: EDO48236 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RKF3]) HSP 1 Score: 58.5362 bits (140), Expect = 3.612e-10 Identity = 35/108 (32.41%), Postives = 48/108 (44.44%), Query Frame = 3 Query: 105 FKDPKKISEHLICQICQDVFNDPWCLSCGHTFCRTCVTTWLASNKSCPTDRTKVTLCCKNFALAD---------IIGDLEISCSWRPYGCGYIGRYYIVKDHIVKCKF 401 F DP + + C IC V DP +CGH FC C+ W+A N +CP L C+ A+ D +I L I C GC I R ++ H KC++ Sbjct: 8 FLDP--VEDDFKCGICFGVLEDPLVTTCGHVFCSQCLVHWIAENGTCP-------LTCEQLAIDDLKKIPPLTRLISLLNIRCCNFQRGCPAILRIESIQTHQRKCQY 106
BLAST of RING-type domain-containing protein vs. Ensembl Nematostella
Match: EDO46837 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RP22]) HSP 1 Score: 51.9878 bits (123), Expect = 1.152e-8 Identity = 30/99 (30.30%), Postives = 49/99 (49.49%), Query Frame = 3 Query: 120 KISEHLICQICQDVFNDPWCLSCGHTFCRTCVTTWLA--SNKSCPTDRTKVTL--CCKNFALADIIGDLEISCSWRPYGCGYIGRYYIVKDHIVKCKFN 404 KI ++L+C IC V + CGH+FC +C+ TWL+ +SCP+ R+ V A+ ++ L + C GC + R +K H+ C + Sbjct: 11 KIDQNLLCNICVGVLENAITTICGHSFCESCLETWLSRPEVQSCPSCRSHVLSLDLIPVHAIRGLVDGLLVHCENADNGCDIVTRMDNMKSHLESCPYG 109
BLAST of RING-type domain-containing protein vs. Ensembl Medaka
Match: rnf41 (ring finger protein 41 [Source:NCBI gene;Acc:101155196]) HSP 1 Score: 68.1662 bits (165), Expect = 4.260e-13 Identity = 34/102 (33.33%), Postives = 51/102 (50.00%), Query Frame = 3 Query: 120 KISEHLICQICQDVFNDP-WCLSCGHTFCRTCVTTWLASNKSCPTDRTKVTLCCKN---FALADIIGDLEISCSWRPYGCGYIGRYYIVKDHIVKCKFNPNK 413 ++ E L+C IC V +P C H FC C+T W A + CP DRT VTL + +++ L+I+C YGC R ++ H+ C+ NP + Sbjct: 11 EVDEDLLCPICSGVLEEPVQAPHCEHAFCNACITQWFAQQQICPVDRTVVTLAHLRPVPRIMRNMLSKLQINCDNASYGCTATLRLDQLQSHLKDCEHNPKR 112
BLAST of RING-type domain-containing protein vs. Ensembl Medaka
Match: traf7 (TNF receptor associated factor 7 [Source:NCBI gene;Acc:101168715]) HSP 1 Score: 66.6254 bits (161), Expect = 2.646e-12 Identity = 38/94 (40.43%), Postives = 52/94 (55.32%), Query Frame = 3 Query: 66 FQSKSEKFEDKIYFKDPKKISEHLICQICQDVFNDPWCLSCGHTFCRTCVTTWLASNKSCPTDRTKVTLCCKNFALADIIGDLEISCSWRPYGC 347 + E E +++ + P S L CQ+C VF DP +CGHTFCR C L S+K CP D K+T+ N A+A+ IG+L + C YGC Sbjct: 80 LHEEEEDAEPQVFAEQP---SVKLCCQLCCSVFKDPVITTCGHTFCRRCA---LTSDK-CPVDAAKLTVVVNNIAVAEQIGELFVHCK---YGC 163
BLAST of RING-type domain-containing protein vs. Ensembl Medaka
Match: traf7 (TNF receptor associated factor 7 [Source:NCBI gene;Acc:101168715]) HSP 1 Score: 66.6254 bits (161), Expect = 2.647e-12 Identity = 38/94 (40.43%), Postives = 52/94 (55.32%), Query Frame = 3 Query: 66 FQSKSEKFEDKIYFKDPKKISEHLICQICQDVFNDPWCLSCGHTFCRTCVTTWLASNKSCPTDRTKVTLCCKNFALADIIGDLEISCSWRPYGC 347 + E E +++ + P S L CQ+C VF DP +CGHTFCR C L S+K CP D K+T+ N A+A+ IG+L + C YGC Sbjct: 80 LHEEEEDAEPQVFAEQP---SVKLCCQLCCSVFKDPVITTCGHTFCRRCA---LTSDK-CPVDAAKLTVVVNNIAVAEQIGELFVHCK---YGC 163
BLAST of RING-type domain-containing protein vs. Ensembl Medaka
Match: traf7 (TNF receptor associated factor 7 [Source:NCBI gene;Acc:101168715]) HSP 1 Score: 66.6254 bits (161), Expect = 3.194e-12 Identity = 38/94 (40.43%), Postives = 52/94 (55.32%), Query Frame = 3 Query: 66 FQSKSEKFEDKIYFKDPKKISEHLICQICQDVFNDPWCLSCGHTFCRTCVTTWLASNKSCPTDRTKVTLCCKNFALADIIGDLEISCSWRPYGC 347 + E E +++ + P S L CQ+C VF DP +CGHTFCR C L S+K CP D K+T+ N A+A+ IG+L + C YGC Sbjct: 78 LHEEEEDAEPQVFAEQP---SVKLCCQLCCSVFKDPVITTCGHTFCRRCA---LTSDK-CPVDAAKLTVVVNNIAVAEQIGELFVHCK---YGC 161
BLAST of RING-type domain-containing protein vs. Ensembl Medaka
Match: pdzrn3b (PDZ domain containing ring finger 3 [Source:NCBI gene;Acc:101166295]) HSP 1 Score: 61.2326 bits (147), Expect = 1.910e-10 Identity = 30/93 (32.26%), Postives = 42/93 (45.16%), Query Frame = 3 Query: 141 CQICQDVFNDPWCLSCGHTFCRTCVTTWLASNKSCPTDRTKVTLCCKN--FALADIIGDLEISCSWRPYGCGYIGRYYIVKDHIVKCKFNPNK 413 C +C V +P CGH FC CV W+ SCP +V+ N L ++I LEI C GC + + + +H C F+P K Sbjct: 18 CNLCNKVLEEPLTTPCGHVFCSGCVLPWVVQQSSCPVKCQRVSARELNHVLPLKNLILKLEIKCDNHARGCDAVVKLQHLAEHAETCDFSPAK 110
BLAST of RING-type domain-containing protein vs. Planmine SMEST
Match: SMESG000075014.1 (SMESG000075014.1) HSP 1 Score: 431.795 bits (1109), Expect = 9.321e-156 Identity = 210/216 (97.22%), Postives = 212/216 (98.15%), Query Frame = 3 Query: 18 MATIKKNRKKQVSSDLFQSKSEKFEDKIYFKDPKKISEHLICQICQDVFNDPWCLSCGHTFCRTCVTTWLASNKSCPTDRTKVTLCCKNFALADIIGDLEISCSWRPYGCGYIGRYYIVKDHIVKCKFNPNKMDPVMQEKMRHINVDTP--PAKKTKQSSSGALDELMSQLDDSIVEDDLTSLPQLEEPSLAARLYMINETKDTLVRFLSEKISFP 659 MATIKKNRKKQVSSDLFQSKSEKFEDKIYFKDPKKISEHLICQICQDVFNDPWCLSCGHTFCRTCVTTWLASNKSCPTDRTKVTLCCKNFALA+IIGDLEISCSWRPYGCGYIGRYYIVKDHIVKCKFNPNKMDPVMQEKMRHINVDTP PAKKTKQSSSGALDELMSQLDDSIVEDDLTSLPQLEEPSLAARLYMINETKDTLVRFLS+K FP Sbjct: 1 MATIKKNRKKQVSSDLFQSKSEKFEDKIYFKDPKKISEHLICQICQDVFNDPWCLSCGHTFCRTCVTTWLASNKSCPTDRTKVTLCCKNFALANIIGDLEISCSWRPYGCGYIGRYYIVKDHIVKCKFNPNKMDPVMQEKMRHINVDTPPTPAKKTKQSSSGALDELMSQLDDSIVEDDLTSLPQLEEPSLAARLYMINETKDTLVRFLSDKPVFP 216
BLAST of RING-type domain-containing protein vs. Planmine SMEST
Match: SMESG000075024.1 (SMESG000075024.1) HSP 1 Score: 410.223 bits (1053), Expect = 2.431e-147 Identity = 199/217 (91.71%), Postives = 203/217 (93.55%), Query Frame = 3 Query: 18 MATIKKNRKKQVSSDLFQSKSEKFEDKIYFKDPKKISEHLICQICQDVFNDPWCLSCGHTFCRTCVTTWLASNKSCPTDRTKVTLCCKNFALADIIGDLEISCSWRPYGCGYIGRYYIVKDHIVKCKFNPNKMDPVMQEKMRHINVDTP--PAKKTKQSSSGALDELMSQLDDSIVEDDLTSLPQLEEPSLAARLYMINETKDTLVRFLSEKISFPK 662 M T KKN KK+VSSDLFQSKSEKFEDKIYFKDPKKISEHLICQICQDVFNDPWCLSCGHTFCRTC+T W+ SN SCP DRTKVTLCCKNF LA+IIGDLEISCSWRPYGC YIGRYYIVKDH VKCKFNPNKMDP MQEKMR INVDTP PAKKTKQSSSGALDELMSQLDDSIVEDDLTSLPQLEEPSLAARLYMINETKDTLVRFLSEKISFPK Sbjct: 1 MVTKKKNTKKRVSSDLFQSKSEKFEDKIYFKDPKKISEHLICQICQDVFNDPWCLSCGHTFCRTCITQWIVSNNSCPADRTKVTLCCKNFTLANIIGDLEISCSWRPYGCNYIGRYYIVKDHNVKCKFNPNKMDPAMQEKMRLINVDTPPTPAKKTKQSSSGALDELMSQLDDSIVEDDLTSLPQLEEPSLAARLYMINETKDTLVRFLSEKISFPK 217
BLAST of RING-type domain-containing protein vs. Planmine SMEST
Match: SMESG000068479.1 (SMESG000068479.1) HSP 1 Score: 69.3218 bits (168), Expect = 1.355e-13 Identity = 37/107 (34.58%), Postives = 61/107 (57.01%), Query Frame = 3 Query: 120 KISEHLICQICQDVFNDPWCLS-CGHTFCRTCVTTWLASNKSCPTDR---TKVTLCCKNFALADIIGDLEISCSWRPYGCGYIGRYYIVKDHIVKCKFNPNKMDPVM 428 ++ E L C IC++V ++P S C HTFC +C+T WL + SCP DR TK L + +++ L + C ++ GC I + + H+ +C++NP+K P+M Sbjct: 11 EVDEELFCSICKNVLDNPVQASKCEHTFCSSCITEWLKFDSSCPIDRKILTKYELKPVPRIIKNLLNKLTLFCDYKIDGCPKILKLEYLMSHVKECEYNPSK--PIM 115
BLAST of RING-type domain-containing protein vs. Planmine SMEST
Match: SMESG000018435.1 (SMESG000018435.1) HSP 1 Score: 51.2174 bits (121), Expect = 2.388e-7 Identity = 34/114 (29.82%), Postives = 57/114 (50.00%), Query Frame = 3 Query: 66 FQSKSEKFEDKIYFKDPKKISEHLICQICQDVFNDPWCLSCGHTFCRTCVTTWLASNKS-CPTDRTKV-TLCCKNFALADIIGDLEISCSWRPYGCGYIGRYYIVKDHIVKCKF 401 F ++E F I + P+ +C C ++ DP CG FC +C+ AS ++ CP +T++ K+ A+ I +LEI C GC +IG++ + DH+ CK+ Sbjct: 14 FDKRTEYFIKNIRLECPR-----FVCSKCHEILIDPSQTQCGCRFCYSCINKHFASCENICPNCQTEIPNEIIKDRAIDREISNLEIRCLLN--GCDHIGQFKYLDDHLRMCKW 120
BLAST of RING-type domain-containing protein vs. Planmine SMEST
Match: SMESG000018409.1 (SMESG000018409.1) HSP 1 Score: 51.2174 bits (121), Expect = 2.637e-7 Identity = 37/135 (27.41%), Postives = 65/135 (48.15%), Query Frame = 3 Query: 66 FQSKSEKFEDKIYFKDPKKISEHLICQICQDVFNDPWCLSCGHTFCRTCVTTWLAS-NKSCPTDRTKV-TLCCKNFALADIIGDLEISCSWRPYGCGYIGRYYIVKDHIVKCKFNPNKMDPVMQ---EKMRHINV 455 ++++E F I + P+ +C C ++ DP CG FC +C+ AS CP +T++ K+ A+ I +LEI C GC +IG++ + DH+ CK+ D Q ++M+ I++ Sbjct: 12 LETRTEYFIKNIRLECPR-----FVCSKCHEILIDPSQTQCGCRFCYSCINKHFASCGNICPNCQTEIPNEIIKDRAIDREISNLEIRCLLN--GCDHIGQFKYLDDHLKMCKWRLENCDKCHQTYPKQMKEIHL 139 The following BLAST results are available for this feature:
BLAST of RING-type domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of RING-type domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of RING-type domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 5
BLAST of RING-type domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of RING-type domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of RING-type domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of RING-type domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of RING-type domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of RING-type domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of RING-type domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 5
BLAST of RING-type domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 1
BLAST of RING-type domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 5
BLAST of RING-type domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of RING-type domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30007147 ID=SMED30007147|Name=RING-type domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=742bpback to top protein sequence of SMED30007147-orf-1 >SMED30007147-orf-1 ID=SMED30007147-orf-1|Name=SMED30007147-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=216bp MATIKKNRKKQVSSDLFQSKSEKFEDKIYFKDPKKISEHLICQICQDVFNback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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