SMED30007111

Overview
NameSMED30007111
Smed IDSMED30007111
Length (bp)2082
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30007111 (SMED30007111) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30007111 (SMED30007111) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30007111 (SMED30007111) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30007111 (SMED30007111) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30007111

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 14

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
epidermisSMED30007111h1SMcG0003242 dd_Smed_v4_14341_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30007111h1SMcG0003242 dd_Smed_v4_14341_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
tail regionSMED30007111h1SMcG0003242 dd_Smed_v6_14341_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
reproductive organSMED30007111h1SMcG0003242 Contig52479newmark_estsPMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30007111h1SMcG0003242 Contig52479uc_Smed_v2PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30007111h1SMcG0003242 Contig29562newmark_estsPMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30007111h1SMcG0003242 Contig29562uc_Smed_v2PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30007111h1SMcG0003242 Contig30603newmark_estsPMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30007111h1SMcG0003242 Contig30603uc_Smed_v2PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30007111h1SMcG0003242 Contig43485newmark_estsPMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30007111h1SMcG0003242 Contig43485uc_Smed_v2PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
epidermisSMED30007111h1SMcG0003242 dd_Smed_v4_14341_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
dorsal region of the whole animalSMED30007111h1SMcG0003242 dd_Smed_v4_14341_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult colorimetric in situ hybridization evidence
dorsal region of the epidermisSMED30007111h1SMcG0003242 dd_Smed_v4_14341_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30007111 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.011176:3516..17196 -10160
Homology
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BLAST of SMED30007111 vs. TrEMBL
Match: A0A504YHQ6 (Uncharacterized protein OS=Fasciola gigantica OX=46835 GN=FGIG_00202 PE=4 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.591e-14
Identity = 42/117 (35.90%), Postives = 66/117 (56.41%), Query Frame = 1 
Query: 1672 QVDHSEHAEPRKYLTMKQLMHCRMTSRPCCIPVHEWSKVAIAGTRRNLRPELFCSYHKNSHCAYQVLAHKYLHRHGISIAKHLERYEILEIINKSVQENAYIRIQNSLLKCLMRVLE 2022
            + D +EH E          MH R + RP  +P  +W  + ++   + L+ + F    K  HC + +L  K  H+ G+SIA HL R E++E INKS+Q+ AY RIQ S+ +CL +V++
Sbjct: 2185 KADAAEHEE---------WMHTRGSPRPSGVPPGQWRLLGMSKGLKKLQTDNFHQIFKGVHCRHALLVQKGFHKQGLSIAAHLARMELVECINKSIQQRAYRRIQTSMKECLKKVIQ 2292
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BLAST of SMED30007111 vs. TrEMBL
Match: G7YSZ3 (Uncharacterized protein OS=Clonorchis sinensis OX=79923 GN=CLF_109827 PE=4 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.512e-13
Identity = 59/189 (31.22%), Postives = 94/189 (49.74%), Query Frame = 1 
Query: 1459 KNTTLLPFIGKSKSLVGNVLDQGLRALHFNLGPGTLVK--AIMENQKIXXXXXXXXXXXXXXXXGSKKITEVMQVDHSEHAEPRKYLTMKQLMHCRMTSRPCCIPVHEWSKVAIAGTRRNLRPELFCSYHKNSHCAYQVLAHKYLHRHGISIAKHLERYEILEIINKSVQENAYIRIQNSLLKCLMRVL 2019
            + +T LP I   + L  N LD   R L   + PG L +  A + ++K +  + ++ +S          + E  Q   +  A+        QL   R++SRP  IP+ +W  + I         ++F S  +  HC Y  LA K  H+  +SIA HL R E++  INK++QE AY RIQ+S+ +CL +V+
Sbjct: 2089 RKSTDLPTITSVEKLTAN-LDTVTRYLKSVMPPGNLTRLLAQLRSEKTSAEAVAELESA---------LIEATQKARTSEAD-------AQLDFVRLSSRPSKIPLSQWKVLDIPQKIERSPSDMFQSETQGVHCRYAQLARKGFHKQDLSIAAHLMRMELVNCINKAIQERAYQRIQSSMRECLKKVI 2260
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BLAST of SMED30007111 vs. TrEMBL
Match: A0A4S2L931 (Uncharacterized protein OS=Opisthorchis felineus OX=147828 GN=CRM22_009011 PE=4 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.540e-13
Identity = 39/99 (39.39%), Postives = 59/99 (59.60%), Query Frame = 1 
Query: 1723 QLMHCRMTSRPCCIPVHEWSKVAIAGTRRNLRPELFCSYHKNSHCAYQVLAHKYLHRHGISIAKHLERYEILEIINKSVQENAYIRIQNSLLKCLMRVL 2019
            Q    R++SRP  IP+ +W  + I         ++F S  +  HC Y  LA K  H+  +SIA HL R E++  INK++QE AY RIQ+S+++CL +V+
Sbjct: 2115 QTEFVRLSSRPSKIPLSQWYVLDIPQKIERSPSDMFQSETQGVHCRYAQLARKGFHKQDLSIAAHLTRMELMNCINKAIQERAYRRIQSSMMECLKKVI 2213
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BLAST of SMED30007111 vs. TrEMBL
Match: A0A1S8WUT2 (Uncharacterized protein OS=Opisthorchis viverrini OX=6198 GN=X801_05859 PE=4 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.501e-8
Identity = 52/171 (30.41%), Postives = 79/171 (46.20%), Query Frame = 1 
Query: 1459 KNTTLLPFIGKSKSLVGNVLDQGLRALHFNLGPGTLVK--AIMENQKIXXXXXXXXXXXXXXXXGSKKITEVMQVDHSEHAEPRKYLTMKQLMHCRMTSRPCCIPVHEWSKVAIAGTRRNLRPELFCSYHKNSHCAYQVLAHKYLHRHGISIAKHLERYEILEIINKSVQE 1965
            K +T LP I   + L  N LD   R L   + PG L +  A + N+K +  + ++               E   +D ++ A  R      QL   R++SRP  IP+ +W  + I         ++F S  +  HC Y  LA K  H+  +SIA HL R E++  INK++QE
Sbjct: 1236 KKSTDLPTITSVEELTAN-LDTVTRYLKSVMPPGNLTRLLAQLRNEKTSAEAVAEL--------------EGALIDAAQKA--RNSEADAQLDFVRLSSRPSKIPLSQWKVLDIPQKIERGPSDMFQSETQGVHCRYAQLARKGFHKQDLSIAAHLTRMELVNCINKAIQE 1389
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BLAST of SMED30007111 vs. TrEMBL
Match: A0A075ABZ3 (Uncharacterized protein OS=Opisthorchis viverrini OX=6198 GN=T265_12614 PE=4 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.811e-8
Identity = 53/176 (30.11%), Postives = 80/176 (45.45%), Query Frame = 1 
Query: 1459 KNTTLLPFIGKSKSLVGNVLDQGLRALHFNLGPGTLVK--AIMENQKIXXXXXXXXXXXXXXXXGSKKITEVMQVDHSEHAEPRKYLTMKQLMHCRMTSRPCCIPVHEWSKVAIAGTRRNLRPELFCSYHKNSHCAYQVLAHKYLHRHGISIAKHLERYEILEIINKSVQENAYIR 1980
            K +T LP I   + L  N LD   R L   + PG L +  A + N+K +  + ++               E   +D ++ A  R      QL   R++SRP  IP+ +W  + I         ++F S  +  HC Y  LA K  H+  +SIA HL R E++  INK++QE    R
Sbjct: 2188 KKSTDLPTITSVEELTAN-LDTVTRYLKSVMPPGNLTRLLAQLRNEKTSAEAVAEL--------------EGALIDAAQKA--RNSEADAQLDFVRLSSRPSKIPLSQWKVLDIPQKIERGPSDMFQSETQGVHCRYAQLARKGFHKQDLSIAAHLTRMELVNCINKAIQERVSRR 2346
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BLAST of SMED30007111 vs. Planmine SMEST
Match: SMESG000018075.1 (SMESG000018075.1)

HSP 1 Score: 528.865 bits (1361), Expect = 0.000e+0
Identity = 276/277 (99.64%), Postives = 276/277 (99.64%), Query Frame = 1 
Query:  877 MNPLMDFSGYPSVVSKSKPESLVSYVSRPGSPSIKLSKNSVLPPIGKSKRKLNDMILQNAHRPDYFHKIEMLEDHDKAKQREEKRASRARKLSQLKKIAKNLKYKVSTEMKVHAKVERRLTNYGQPDIAELIAKKTEYYGSIDALRTKIKDEISKEYSNFVKRIDFDASDSQQESNMMSEPALIQTKKFQKFYGKNTTLLPFIGKSKSLVGNVLDQGLRALHFNLGPGTLVKAIMENQKIXXXXXXXXXXXXXXXXGSKKITEVMQVDHSEHAEPRK 1707
            MNPLMDFSGYPSVVSKSKPESLVSYVSRPGSPSIKLSKNSVLPPIGKSKRKLNDMILQNAHRPDYFHKIEMLEDHDKAKQREEKRASRARKLSQLKKIAKNLKYKVSTEMKVHAKVERRLTNYGQPDIAELIAKKTEYYGSIDALRTKIKDEISKEYSNFVKRIDFDASDSQQESNMMSEPALIQTKKFQKFYGKNTTLLPFIGKSKSLVGNVLDQGLRALHFNLGPGTLVKAIMENQKI TSSDSKYDSDDWWTDGSKKITEVMQVDHSEHAEPRK
Sbjct:    1 MNPLMDFSGYPSVVSKSKPESLVSYVSRPGSPSIKLSKNSVLPPIGKSKRKLNDMILQNAHRPDYFHKIEMLEDHDKAKQREEKRASRARKLSQLKKIAKNLKYKVSTEMKVHAKVERRLTNYGQPDIAELIAKKTEYYGSIDALRTKIKDEISKEYSNFVKRIDFDASDSQQESNMMSEPALIQTKKFQKFYGKNTTLLPFIGKSKSLVGNVLDQGLRALHFNLGPGTLVKAIMENQKIATSSDSKYDSDDWWTDGSKKITEVMQVDHSEHAEPRK 277
[Close]
BLAST of SMED30007111 vs. Planmine SMEST
Match: SMESG000018075.1 (SMESG000018075.1)

HSP 1 Score: 519.62 bits (1337), Expect = 0.000e+0
Identity = 272/273 (99.63%), Postives = 272/273 (99.63%), Query Frame = 1 
Query:  889 MDFSGYPSVVSKSKPESLVSYVSRPGSPSIKLSKNSVLPPIGKSKRKLNDMILQNAHRPDYFHKIEMLEDHDKAKQREEKRASRARKLSQLKKIAKNLKYKVSTEMKVHAKVERRLTNYGQPDIAELIAKKTEYYGSIDALRTKIKDEISKEYSNFVKRIDFDASDSQQESNMMSEPALIQTKKFQKFYGKNTTLLPFIGKSKSLVGNVLDQGLRALHFNLGPGTLVKAIMENQKIXXXXXXXXXXXXXXXXGSKKITEVMQVDHSEHAEPRK 1707
            MDFSGYPSVVSKSKPESLVSYVSRPGSPSIKLSKNSVLPPIGKSKRKLNDMILQNAHRPDYFHKIEMLEDHDKAKQREEKRASRARKLSQLKKIAKNLKYKVSTEMKVHAKVERRLTNYGQPDIAELIAKKTEYYGSIDALRTKIKDEISKEYSNFVKRIDFDASDSQQESNMMSEPALIQTKKFQKFYGKNTTLLPFIGKSKSLVGNVLDQGLRALHFNLGPGTLVKAIMENQKI TSSDSKYDSDDWWTDGSKKITEVMQVDHSEHAEPRK
Sbjct:    1 MDFSGYPSVVSKSKPESLVSYVSRPGSPSIKLSKNSVLPPIGKSKRKLNDMILQNAHRPDYFHKIEMLEDHDKAKQREEKRASRARKLSQLKKIAKNLKYKVSTEMKVHAKVERRLTNYGQPDIAELIAKKTEYYGSIDALRTKIKDEISKEYSNFVKRIDFDASDSQQESNMMSEPALIQTKKFQKFYGKNTTLLPFIGKSKSLVGNVLDQGLRALHFNLGPGTLVKAIMENQKIATSSDSKYDSDDWWTDGSKKITEVMQVDHSEHAEPRK 273
[Close]
BLAST of SMED30007111 vs. Planmine SMEST
Match: SMESG000027823.1 (SMESG000027823.1)

HSP 1 Score: 307.76 bits (787), Expect = 2.465e-100
Identity = 202/206 (98.06%), Postives = 203/206 (98.54%), Query Frame = 1 
Query:  148 DPLVDNEEIMEMIASNSFSNLITDMQNILSQSLKQYDIPISLDRSTTNXXXXXXXXXXXXXXFKDEIQTFSPLYPDEVDFSKNPLSQLTIGEHXXXXXXXXXXXXXXXXFLRNVNTLKPMDQEKGYEMGLMIRHSKSDDDNLAITSVGSSKKLASPIYPTMFNVTKAQSKKLNADYSXXXXXXXXXXXXXNVIKMHERKIDMMIHT 765
            DPLVDNEEIMEMIASNSFSNLITDMQNILSQSLKQYDIPISLDRSTTNLLLLLDIGVEDLDDFKDEIQTFSPLYPDEVDFSKNPLSQLTIGEHKLKISKNDIIIDDKLNFLRNVNTLKPMDQEKGYEMGLMIRHSKSDD NLAITSVGSSKKLASPIYPTMFNVTKAQSKKLNADYSKKEELKLKITEIENVIKMHERKIDM+  T
Sbjct:   27 DPLVDNEEIMEMIASNSFSNLITDMQNILSQSLKQYDIPISLDRSTTNLLLLLDIGVEDLDDFKDEIQTFSPLYPDEVDFSKNPLSQLTIGEHKLKISKNDIIIDDKLNFLRNVNTLKPMDQEKGYEMGLMIRHSKSDDGNLAITSVGSSKKLASPIYPTMFNVTKAQSKKLNADYSKKEELKLKITEIENVIKMHERKIDMVSFT 232
[Close]
BLAST of SMED30007111 vs. Planmine SMEST
Match: SMESG000027823.1 (SMESG000027823.1)

HSP 1 Score: 290.426 bits (742), Expect = 3.441e-94
Identity = 193/197 (97.97%), Postives = 194/197 (98.48%), Query Frame = 1 
Query:  175 MEMIASNSFSNLITDMQNILSQSLKQYDIPISLDRSTTNXXXXXXXXXXXXXXFKDEIQTFSPLYPDEVDFSKNPLSQLTIGEHXXXXXXXXXXXXXXXXFLRNVNTLKPMDQEKGYEMGLMIRHSKSDDDNLAITSVGSSKKLASPIYPTMFNVTKAQSKKLNADYSXXXXXXXXXXXXXNVIKMHERKIDMMIHT 765
            MEMIASNSFSNLITDMQNILSQSLKQYDIPISLDRSTTNLLLLLDIGVEDLDDFKDEIQTFSPLYPDEVDFSKNPLSQLTIGEHKLKISKNDIIIDDKLNFLRNVNTLKPMDQEKGYEMGLMIRHSKSDD NLAITSVGSSKKLASPIYPTMFNVTKAQSKKLNADYSKKEELKLKITEIENVIKMHERKIDM+  T
Sbjct:    1 MEMIASNSFSNLITDMQNILSQSLKQYDIPISLDRSTTNLLLLLDIGVEDLDDFKDEIQTFSPLYPDEVDFSKNPLSQLTIGEHKLKISKNDIIIDDKLNFLRNVNTLKPMDQEKGYEMGLMIRHSKSDDGNLAITSVGSSKKLASPIYPTMFNVTKAQSKKLNADYSKKEELKLKITEIENVIKMHERKIDMVSFT 197
The following BLAST results are available for this feature:
BLAST of SMED30007111 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007111 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007111 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007111 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007111 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007111 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007111 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007111 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A504YHQ63.591e-1435.90Uncharacterized protein OS=Fasciola gigantica OX=4... [more]
G7YSZ34.512e-1331.22Uncharacterized protein OS=Clonorchis sinensis OX=... [more]
A0A4S2L9319.540e-1339.39Uncharacterized protein OS=Opisthorchis felineus O... [more]
A0A1S8WUT22.501e-830.41Uncharacterized protein OS=Opisthorchis viverrini ... [more]
A0A075ABZ33.811e-830.11Uncharacterized protein OS=Opisthorchis viverrini ... [more]
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BLAST of SMED30007111 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007111 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007111 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007111 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007111 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007111 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 4
Match NameE-valueIdentityDescription
SMESG000018075.10.000e+099.64SMESG000018075.1[more]
SMESG000018075.10.000e+099.63SMESG000018075.1[more]
SMESG000027823.12.465e-10098.06SMESG000027823.1[more]
SMESG000027823.13.441e-9497.97SMESG000027823.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30007111 ID=SMED30007111|Name=SMED30007111|organism=Schmidtea mediterranea sexual|type=transcript|length=2082bp
GTCCTGACTAGTAAAATTATCTACGATTTAGATCTCTATTTAACAATTTT
ACAATATGGGCTGCAGTTTATGAGTGCACAAAATTTTTATTTTTGCACTG
AGGCCAAATCTGCTTAGACGACACTTTCTATTTGTATAAGATTAATAGAT
CCTTTAGTGGATAATGAAGAGATAATGGAAATGATAGCTTCAAATTCCTT
TTCTAATCTTATAACGGACATGCAAAATATATTAAGTCAATCATTAAAAC
AATATGACATTCCCATCAGTTTGGACAGAAGTACGACAAATTTATTGCTT
CTTTTAGATATCGGAGTTGAAGACCTCGACGATTTCAAAGATGAAATTCA
AACGTTTAGTCCTCTTTATCCCGACGAAGTTGACTTTTCAAAAAATCCTT
TATCTCAGTTGACAATTGGAGAACATAAGTTGAAAATTTCCAAAAACGAT
ATCATCATTGATGACAAACTTAATTTTCTTCGAAATGTAAACACATTGAA
ACCAATGGACCAAGAGAAAGGATATGAGATGGGCTTAATGATAAGGCATT
CCAAGAGCGATGACGATAATTTAGCGATAACATCAGTTGGATCTTCAAAA
AAGTTGGCAAGTCCAATATATCCAACTATGTTTAATGTGACAAAAGCTCA
GTCAAAAAAGTTAAATGCAGACTATTCTAAAAAAGAGGAGCTTAAACTTA
AAATAACAGAAATCGAAAATGTAATTAAAATGCACGAGAGAAAAATAGAT
ATGATGATCCATACAAGAGATAGTTTAGATTCTCTAGTTGAAATGGCTCG
GGATCAAAAACCTGGATCAAAAACAAGACTAATGAATTTAATATGTAAAT
CTCCAGCCTTAAAAGCTCTTGCAACAATGAATCCACTAATGGATTTTTCA
GGATATCCTAGTGTAGTATCAAAATCAAAACCAGAATCTTTAGTAAGTTA
CGTGTCACGTCCAGGATCACCATCAATCAAATTAAGTAAAAACTCAGTTT
TACCGCCTATTGGAAAATCTAAAAGAAAATTAAATGATATGATTTTGCAA
AATGCTCACCGTCCTGACTATTTTCACAAAATTGAAATGTTAGAAGATCA
CGACAAAGCCAAGCAAAGGGAAGAGAAGCGAGCCAGTCGAGCACGGAAGT
TATCCCAATTAAAGAAAATTGCAAAGAATTTGAAATATAAAGTTTCTACC
GAAATGAAAGTTCATGCAAAAGTAGAGAGAAGGTTGACTAATTATGGTCA
ACCTGATATTGCTGAATTGATTGCAAAAAAAACAGAATATTATGGTAGCA
TAGATGCATTAAGAACAAAGATTAAAGATGAAATTTCTAAAGAATATTCA
AATTTTGTGAAAAGAATAGATTTCGATGCTTCAGATAGTCAACAGGAATC
TAATATGATGTCTGAACCAGCATTAATTCAGACAAAAAAATTTCAAAAGT
TCTATGGAAAGAATACAACTCTTCTACCTTTTATCGGAAAATCAAAGTCA
CTTGTGGGAAATGTATTAGACCAAGGTCTTCGTGCATTACATTTCAATCT
GGGTCCTGGAACATTAGTCAAGGCAATAATGGAAAACCAAAAAATAACTA
CAAGCTCTGATTCAAAATATGATTCAGACGATTGGTGGACTGACGGATCT
AAAAAGATTACTGAAGTAATGCAAGTAGATCATAGTGAACATGCTGAACC
AAGAAAGTACCTTACAATGAAACAACTCATGCATTGTCGAATGACATCGA
GACCGTGTTGTATCCCAGTTCATGAATGGTCAAAAGTTGCGATAGCGGGA
ACTCGTCGAAATTTAAGACCTGAATTGTTTTGTTCATATCACAAGAATAG
TCATTGTGCTTATCAAGTTTTAGCTCATAAATACTTGCATAGGCATGGAA
TTTCCATAGCTAAACACTTGGAACGGTACGAGATTTTGGAAATCATTAAC
AAATCAGTCCAGGAAAATGCATATATCAGAATACAAAATTCTTTGTTAAA
ATGTTTAATGCGAGTATTAGAGGAAAAATGATCTTACTGATAATTAATAA
GTATATTTTAAGGCTTGAAAAATGTTTCAGCG
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protein sequence of SMED30007111-orf-1

>SMED30007111-orf-1 ID=SMED30007111-orf-1|Name=SMED30007111-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=619bp
MEMIASNSFSNLITDMQNILSQSLKQYDIPISLDRSTTNLLLLLDIGVED
LDDFKDEIQTFSPLYPDEVDFSKNPLSQLTIGEHKLKISKNDIIIDDKLN
FLRNVNTLKPMDQEKGYEMGLMIRHSKSDDDNLAITSVGSSKKLASPIYP
TMFNVTKAQSKKLNADYSKKEELKLKITEIENVIKMHERKIDMMIHTRDS
LDSLVEMARDQKPGSKTRLMNLICKSPALKALATMNPLMDFSGYPSVVSK
SKPESLVSYVSRPGSPSIKLSKNSVLPPIGKSKRKLNDMILQNAHRPDYF
HKIEMLEDHDKAKQREEKRASRARKLSQLKKIAKNLKYKVSTEMKVHAKV
ERRLTNYGQPDIAELIAKKTEYYGSIDALRTKIKDEISKEYSNFVKRIDF
DASDSQQESNMMSEPALIQTKKFQKFYGKNTTLLPFIGKSKSLVGNVLDQ
GLRALHFNLGPGTLVKAIMENQKITTSSDSKYDSDDWWTDGSKKITEVMQ
VDHSEHAEPRKYLTMKQLMHCRMTSRPCCIPVHEWSKVAIAGTRRNLRPE
LFCSYHKNSHCAYQVLAHKYLHRHGISIAKHLERYEILEIINKSVQENAY
IRIQNSLLKCLMRVLEEK*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000034epidermis
PLANA:0000054dorsal region of the epidermis
PLANA:0000141dorsal region of the whole animal
PLANA:0000421tail
PLANA:0002032epidermal cell
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 306..326
NoneNo IPR availableCOILSCoilCoilcoord: 170..190