SMED30007106

Overview
NameSMED30007106
Smed IDSMED30007106
Length (bp)1789
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30007106 (SMED30007106) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30007106 (SMED30007106) in cells (dots) of each of the 12 neoblast clusters.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30007106

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 4

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
intestinal phagocyteSMED30007106SMESG000068028.1 Contig2424GPL15192PMID:23079596
Forsthoefel et al., 2012
FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30007106SMESG000011835.1 Contig2424GPL15192PMID:23079596
Forsthoefel et al., 2012
FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
gutSMED30007106SMESG000011835.1 dd_Smed_v4_3825_1_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30007106SMESG000011835.1 dd_Smed_v4_3825_1_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30007106 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.003323:4933..31257 -8264
Homology
BLAST of SMED30007106 vs. Planmine SMEST
Match: SMESG000011835.1 (SMESG000011835.1)

HSP 1 Score: 413.69 bits (1062), Expect = 3.321e-137
Identity = 227/242 (93.80%), Postives = 229/242 (94.63%), Query Frame = 3
Query:  435 KKKHPENSSKSKINNNTQTINPKNPNKAQAEHPKSSSKTKKNENAPTNSENSDKSQTKDQKTTGNIKPHKKTESTNSSHHDKSLTTKQIETTIHETVLNPEESKKVDPFKMKTTGSEKSQDSR-----------VDNKLKKDEIKNSEDTNHLKRQKSQNLGETNDNSSSHFMIFIFFGLLFTIVAYVAFQKRKKIMAYVIEXXXXXXXXXXXXXXKDSKVSYKPLDSEDQEAGKNSYKYVY 1127
            ++KHPENSSKSKINNNTQTINPKNPNKAQAEHPKSSSKTKKNENAPTNSENSDKSQTKDQKTTGNIKPHKKTESTNSSHHDKSLTTKQIETTIHETVLNPEESKKVDPFKMKTTGSEKSQDS            VDNKLKKDEIKNSEDTNHLKRQKSQNLGETNDNSSSHFMIFIFFGLLFTIVAYVAFQKRKKIMAYVIEGRRRTSRSRRTSGGKDSKV YKPLDSEDQEAGKNSYKYVY
Sbjct:  390 RRKHPENSSKSKINNNTQTINPKNPNKAQAEHPKSSSKTKKNENAPTNSENSDKSQTKDQKTTGNIKPHKKTESTNSSHHDKSLTTKQIETTIHETVLNPEESKKVDPFKMKTTGSEKSQDSSLIDLAKPDENIVDNKLKKDEIKNSEDTNHLKRQKSQNLGETNDNSSSHFMIFIFFGLLFTIVAYVAFQKRKKIMAYVIEGRRRTSRSRRTSGGKDSKVLYKPLDSEDQEAGKNSYKYVY 631          

HSP 2 Score: 227.254 bits (578), Expect = 5.516e-66
Identity = 144/166 (86.75%), Postives = 150/166 (90.36%), Query Frame = 3
Query:   51 VCYLTISIKSAEINSNVESDESPRKNDSNTNRNDQKMPSQFSPNTAITVILNISTILPQKTSNSVSLNSFTSTNTRKETLLVNTTYTTLKTKSKNPMKIHLXXXXXXXXXXXXXXXXXXHPIDVENSNKK-KHPENSSKSKINNNTQTINPKNPNKAQAEHPKSSS 545
            VCYLTISIKSAEINSNVESDESPRKNDSNTNRNDQKMPSQFSPNTAITVILNISTILPQKTSNSVSLNSFTSTNTRKETLLVNTTYTTLKTKSKNPMKI+LTKTENPENPEKPKTNNNTHPIDVENSNKK ++PEN  K K NNNT  I+ +N NK +    K  S
Sbjct:    8 VCYLTISIKSAEINSNVESDESPRKNDSNTNRNDQKMPSQFSPNTAITVILNISTILPQKTSNSVSLNSFTSTNTRKETLLVNTTYTTLKTKSKNPMKIYLTKTENPENPEKPKTNNNTHPIDVENSNKKTENPENPEKPKTNNNTHPIDVENSNKKKEIFCKGGS 173          
BLAST of SMED30007106 vs. Planmine SMEST
Match: SMESG000011835.1 (SMESG000011835.1)

HSP 1 Score: 413.69 bits (1062), Expect = 3.413e-137
Identity = 227/242 (93.80%), Postives = 229/242 (94.63%), Query Frame = 3
Query:  435 KKKHPENSSKSKINNNTQTINPKNPNKAQAEHPKSSSKTKKNENAPTNSENSDKSQTKDQKTTGNIKPHKKTESTNSSHHDKSLTTKQIETTIHETVLNPEESKKVDPFKMKTTGSEKSQDSR-----------VDNKLKKDEIKNSEDTNHLKRQKSQNLGETNDNSSSHFMIFIFFGLLFTIVAYVAFQKRKKIMAYVIEXXXXXXXXXXXXXXKDSKVSYKPLDSEDQEAGKNSYKYVY 1127
            ++KHPENSSKSKINNNTQTINPKNPNKAQAEHPKSSSKTKKNENAPTNSENSDKSQTKDQKTTGNIKPHKKTESTNSSHHDKSLTTKQIETTIHETVLNPEESKKVDPFKMKTTGSEKSQDS            VDNKLKKDEIKNSEDTNHLKRQKSQNLGETNDNSSSHFMIFIFFGLLFTIVAYVAFQKRKKIMAYVIEGRRRTSRSRRTSGGKDSKV YKPLDSEDQEAGKNSYKYVY
Sbjct:  392 RRKHPENSSKSKINNNTQTINPKNPNKAQAEHPKSSSKTKKNENAPTNSENSDKSQTKDQKTTGNIKPHKKTESTNSSHHDKSLTTKQIETTIHETVLNPEESKKVDPFKMKTTGSEKSQDSSLIDLAKPDENIVDNKLKKDEIKNSEDTNHLKRQKSQNLGETNDNSSSHFMIFIFFGLLFTIVAYVAFQKRKKIMAYVIEGRRRTSRSRRTSGGKDSKVLYKPLDSEDQEAGKNSYKYVY 633          

HSP 2 Score: 227.254 bits (578), Expect = 5.970e-66
Identity = 144/166 (86.75%), Postives = 150/166 (90.36%), Query Frame = 3
Query:   51 VCYLTISIKSAEINSNVESDESPRKNDSNTNRNDQKMPSQFSPNTAITVILNISTILPQKTSNSVSLNSFTSTNTRKETLLVNTTYTTLKTKSKNPMKIHLXXXXXXXXXXXXXXXXXXHPIDVENSNKK-KHPENSSKSKINNNTQTINPKNPNKAQAEHPKSSS 545
            VCYLTISIKSAEINSNVESDESPRKNDSNTNRNDQKMPSQFSPNTAITVILNISTILPQKTSNSVSLNSFTSTNTRKETLLVNTTYTTLKTKSKNPMKI+LTKTENPENPEKPKTNNNTHPIDVENSNKK ++PEN  K K NNNT  I+ +N NK +    K  S
Sbjct:   10 VCYLTISIKSAEINSNVESDESPRKNDSNTNRNDQKMPSQFSPNTAITVILNISTILPQKTSNSVSLNSFTSTNTRKETLLVNTTYTTLKTKSKNPMKIYLTKTENPENPEKPKTNNNTHPIDVENSNKKTENPENPEKPKTNNNTHPIDVENSNKKKEIFCKGGS 175          
BLAST of SMED30007106 vs. Planmine SMEST
Match: SMESG000011835.1 (SMESG000011835.1)

HSP 1 Score: 413.69 bits (1062), Expect = 5.559e-137
Identity = 228/249 (91.57%), Postives = 232/249 (93.17%), Query Frame = 3
Query:  414 IDVENSNKKKHPENSSKSKINNNTQTINPKNPNKAQAEHPKSSSKTKKNENAPTNSENSDKSQTKDQKTTGNIKPHKKTESTNSSHHDKSLTTKQIETTIHETVLNPEESKKVDPFKMKTTGSEKSQDSR-----------VDNKLKKDEIKNSEDTNHLKRQKSQNLGETNDNSSSHFMIFIFFGLLFTIVAYVAFQKRKKIMAYVIEXXXXXXXXXXXXXXKDSKVSYKPLDSEDQEAGKNSYKYVY 1127
            + V+   ++KHPENSSKSKINNNTQTINPKNPNKAQAEHPKSSSKTKKNENAPTNSENSDKSQTKDQKTTGNIKPHKKTESTNSSHHDKSLTTKQIETTIHETVLNPEESKKVDPFKMKTTGSEKSQDS            VDNKLKKDEIKNSEDTNHLKRQKSQNLGETNDNSSSHFMIFIFFGLLFTIVAYVAFQKRKKIMAYVIEGRRRTSRSRRTSGGKDSKV YKPLDSEDQEAGKNSYKYVY
Sbjct:  396 VMVDRFFRRKHPENSSKSKINNNTQTINPKNPNKAQAEHPKSSSKTKKNENAPTNSENSDKSQTKDQKTTGNIKPHKKTESTNSSHHDKSLTTKQIETTIHETVLNPEESKKVDPFKMKTTGSEKSQDSSLIDLAKPDENIVDNKLKKDEIKNSEDTNHLKRQKSQNLGETNDNSSSHFMIFIFFGLLFTIVAYVAFQKRKKIMAYVIEGRRRTSRSRRTSGGKDSKVLYKPLDSEDQEAGKNSYKYVY 644          

HSP 2 Score: 228.024 bits (580), Expect = 3.653e-66
Identity = 144/166 (86.75%), Postives = 150/166 (90.36%), Query Frame = 3
Query:   51 VCYLTISIKSAEINSNVESDESPRKNDSNTNRNDQKMPSQFSPNTAITVILNISTILPQKTSNSVSLNSFTSTNTRKETLLVNTTYTTLKTKSKNPMKIHLXXXXXXXXXXXXXXXXXXHPIDVENSNKK-KHPENSSKSKINNNTQTINPKNPNKAQAEHPKSSS 545
            VCYLTISIKSAEINSNVESDESPRKNDSNTNRNDQKMPSQFSPNTAITVILNISTILPQKTSNSVSLNSFTSTNTRKETLLVNTTYTTLKTKSKNPMKI+LTKTENPENPEKPKTNNNTHPIDVENSNKK ++PEN  K K NNNT  I+ +N NK +    K  S
Sbjct:    8 VCYLTISIKSAEINSNVESDESPRKNDSNTNRNDQKMPSQFSPNTAITVILNISTILPQKTSNSVSLNSFTSTNTRKETLLVNTTYTTLKTKSKNPMKIYLTKTENPENPEKPKTNNNTHPIDVENSNKKTENPENPEKPKTNNNTHPIDVENSNKKKEIFCKGGS 173          
BLAST of SMED30007106 vs. Planmine SMEST
Match: SMESG000011835.1 (SMESG000011835.1)

HSP 1 Score: 413.69 bits (1062), Expect = 5.710e-137
Identity = 228/249 (91.57%), Postives = 232/249 (93.17%), Query Frame = 3
Query:  414 IDVENSNKKKHPENSSKSKINNNTQTINPKNPNKAQAEHPKSSSKTKKNENAPTNSENSDKSQTKDQKTTGNIKPHKKTESTNSSHHDKSLTTKQIETTIHETVLNPEESKKVDPFKMKTTGSEKSQDSR-----------VDNKLKKDEIKNSEDTNHLKRQKSQNLGETNDNSSSHFMIFIFFGLLFTIVAYVAFQKRKKIMAYVIEXXXXXXXXXXXXXXKDSKVSYKPLDSEDQEAGKNSYKYVY 1127
            + V+   ++KHPENSSKSKINNNTQTINPKNPNKAQAEHPKSSSKTKKNENAPTNSENSDKSQTKDQKTTGNIKPHKKTESTNSSHHDKSLTTKQIETTIHETVLNPEESKKVDPFKMKTTGSEKSQDS            VDNKLKKDEIKNSEDTNHLKRQKSQNLGETNDNSSSHFMIFIFFGLLFTIVAYVAFQKRKKIMAYVIEGRRRTSRSRRTSGGKDSKV YKPLDSEDQEAGKNSYKYVY
Sbjct:  398 VMVDRFFRRKHPENSSKSKINNNTQTINPKNPNKAQAEHPKSSSKTKKNENAPTNSENSDKSQTKDQKTTGNIKPHKKTESTNSSHHDKSLTTKQIETTIHETVLNPEESKKVDPFKMKTTGSEKSQDSSLIDLAKPDENIVDNKLKKDEIKNSEDTNHLKRQKSQNLGETNDNSSSHFMIFIFFGLLFTIVAYVAFQKRKKIMAYVIEGRRRTSRSRRTSGGKDSKVLYKPLDSEDQEAGKNSYKYVY 646          

HSP 2 Score: 228.024 bits (580), Expect = 4.074e-66
Identity = 144/166 (86.75%), Postives = 150/166 (90.36%), Query Frame = 3
Query:   51 VCYLTISIKSAEINSNVESDESPRKNDSNTNRNDQKMPSQFSPNTAITVILNISTILPQKTSNSVSLNSFTSTNTRKETLLVNTTYTTLKTKSKNPMKIHLXXXXXXXXXXXXXXXXXXHPIDVENSNKK-KHPENSSKSKINNNTQTINPKNPNKAQAEHPKSSS 545
            VCYLTISIKSAEINSNVESDESPRKNDSNTNRNDQKMPSQFSPNTAITVILNISTILPQKTSNSVSLNSFTSTNTRKETLLVNTTYTTLKTKSKNPMKI+LTKTENPENPEKPKTNNNTHPIDVENSNKK ++PEN  K K NNNT  I+ +N NK +    K  S
Sbjct:   10 VCYLTISIKSAEINSNVESDESPRKNDSNTNRNDQKMPSQFSPNTAITVILNISTILPQKTSNSVSLNSFTSTNTRKETLLVNTTYTTLKTKSKNPMKIYLTKTENPENPEKPKTNNNTHPIDVENSNKKTENPENPEKPKTNNNTHPIDVENSNKKKEIFCKGGS 175          
BLAST of SMED30007106 vs. Planmine SMEST
Match: SMESG000011835.1 (SMESG000011835.1)

HSP 1 Score: 413.69 bits (1062), Expect = 1.613e-136
Identity = 227/242 (93.80%), Postives = 229/242 (94.63%), Query Frame = 3
Query:  435 KKKHPENSSKSKINNNTQTINPKNPNKAQAEHPKSSSKTKKNENAPTNSENSDKSQTKDQKTTGNIKPHKKTESTNSSHHDKSLTTKQIETTIHETVLNPEESKKVDPFKMKTTGSEKSQDSR-----------VDNKLKKDEIKNSEDTNHLKRQKSQNLGETNDNSSSHFMIFIFFGLLFTIVAYVAFQKRKKIMAYVIEXXXXXXXXXXXXXXKDSKVSYKPLDSEDQEAGKNSYKYVY 1127
            ++KHPENSSKSKINNNTQTINPKNPNKAQAEHPKSSSKTKKNENAPTNSENSDKSQTKDQKTTGNIKPHKKTESTNSSHHDKSLTTKQIETTIHETVLNPEESKKVDPFKMKTTGSEKSQDS            VDNKLKKDEIKNSEDTNHLKRQKSQNLGETNDNSSSHFMIFIFFGLLFTIVAYVAFQKRKKIMAYVIEGRRRTSRSRRTSGGKDSKV YKPLDSEDQEAGKNSYKYVY
Sbjct:  438 RRKHPENSSKSKINNNTQTINPKNPNKAQAEHPKSSSKTKKNENAPTNSENSDKSQTKDQKTTGNIKPHKKTESTNSSHHDKSLTTKQIETTIHETVLNPEESKKVDPFKMKTTGSEKSQDSSLIDLAKPDENIVDNKLKKDEIKNSEDTNHLKRQKSQNLGETNDNSSSHFMIFIFFGLLFTIVAYVAFQKRKKIMAYVIEGRRRTSRSRRTSGGKDSKVLYKPLDSEDQEAGKNSYKYVY 679          

HSP 2 Score: 227.254 bits (578), Expect = 1.417e-65
Identity = 144/166 (86.75%), Postives = 150/166 (90.36%), Query Frame = 3
Query:   51 VCYLTISIKSAEINSNVESDESPRKNDSNTNRNDQKMPSQFSPNTAITVILNISTILPQKTSNSVSLNSFTSTNTRKETLLVNTTYTTLKTKSKNPMKIHLXXXXXXXXXXXXXXXXXXHPIDVENSNKK-KHPENSSKSKINNNTQTINPKNPNKAQAEHPKSSS 545
            VCYLTISIKSAEINSNVESDESPRKNDSNTNRNDQKMPSQFSPNTAITVILNISTILPQKTSNSVSLNSFTSTNTRKETLLVNTTYTTLKTKSKNPMKI+LTKTENPENPEKPKTNNNTHPIDVENSNKK ++PEN  K K NNNT  I+ +N NK +    K  S
Sbjct:   10 VCYLTISIKSAEINSNVESDESPRKNDSNTNRNDQKMPSQFSPNTAITVILNISTILPQKTSNSVSLNSFTSTNTRKETLLVNTTYTTLKTKSKNPMKIYLTKTENPENPEKPKTNNNTHPIDVENSNKKTENPENPEKPKTNNNTHPIDVENSNKKKEIFCKGGS 175          
The following BLAST results are available for this feature:
BLAST of SMED30007106 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007106 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007106 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007106 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007106 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007106 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007106 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007106 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007106 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007106 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007106 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007106 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007106 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007106 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000011835.13.321e-13793.80SMESG000011835.1[more]
SMESG000011835.13.413e-13793.80SMESG000011835.1[more]
SMESG000011835.15.559e-13791.57SMESG000011835.1[more]
SMESG000011835.15.710e-13791.57SMESG000011835.1[more]
SMESG000011835.11.613e-13693.80SMESG000011835.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30007106 ID=SMED30007106|Name=SMED30007106|organism=Schmidtea mediterranea sexual|type=transcript|length=1789bp
CTTAGATATTTTAAATTTTCAAAATGTTTATGAAAATTAATTTTATTTTT
GTATGCTATTTAACAATCTCAATAAAGTCTGCAGAAATCAATTCAAATGT
TGAGTCAGATGAATCTCCGAGGAAAAACGATTCGAATACCAACAGAAATG
ACCAAAAAATGCCTTCTCAATTTAGTCCAAACACAGCTATAACTGTTATT
TTAAATATATCCACAATCTTGCCACAAAAAACTTCAAATTCTGTGAGTTT
AAATTCTTTTACCTCGACTAATACGAGAAAAGAAACTTTGCTTGTTAACA
CGACTTATACAACATTAAAAACAAAGTCAAAGAATCCTATGAAAATTCAT
TTAACGAAAACTGAAAATCCTGAAAATCCAGAAAAACCAAAAACTAATAA
TAACACCCATCCGATAGATGTGGAAAATTCGAATAAAAAAAAACATCCAG
AAAATTCATCGAAATCAAAAATTAATAATAACACGCAAACAATAAATCCT
AAAAACCCAAATAAAGCACAAGCGGAACATCCCAAAAGTTCAAGCAAAAC
GAAAAAAAATGAAAATGCCCCGACAAATTCCGAAAACTCAGATAAATCTC
AAACGAAAGATCAGAAAACTACAGGTAATATAAAACCCCATAAGAAAACT
GAATCAACGAATTCGAGTCATCACGATAAATCATTGACCACAAAACAAAT
AGAAACCACAATCCATGAAACTGTATTGAATCCCGAAGAATCTAAAAAAG
TAGATCCCTTTAAAATGAAAACGACTGGATCTGAAAAATCACAGGACTCA
AGAGTTGACAATAAACTTAAAAAAGATGAAATCAAAAATTCAGAAGACAC
AAATCACTTAAAAAGACAAAAAAGTCAAAATTTAGGTGAAACGAACGATA
ACAGTAGTTCTCATTTTATGATCTTCATTTTTTTTGGATTGCTTTTCACA
ATTGTCGCTTATGTAGCCTTCCAGAAGCGTAAAAAGATTATGGCATATGT
TATCGAAGGCCGAAGACGAACGTCAAGAAGCCGTCGGACTTCCGGTGGAA
AGGATTCGAAAGTTTCATATAAACCTTTAGACTCTGAAGATCAAGAAGCT
GGAAAAAACAGCTATAAATATGTCTATTAATTGATAAGAATTTACCATTA
TTTGTAAAATGTTCTTCATGTGTTACATTGGCCTTTAATGTAATTATTTA
TACATATTTATCAATTTTAATATATGTAATTTGTTTGGTCAATGAGGAAA
TATTTCTGAAATGTTTGAAAACTTTCCATGTGATTATTTTATAAAGTTCA
GTGCTATAGGAGAATTGCGTATACGATATATTTGAATTTAGAATAATTAA
ATGACTACTTTATTGTTTTATTAGTATTAACTCTAGGTCAGTAAAAATGA
TGCCTTTTAATTAGACGAGAATTGAGTCTGCTGACTGCCTCGTGTTTTAT
CGTGTCAGAATTTGCATGATACAAACTATTTTTCATTATTATTCAACATT
CTGATGTAATATTACATATATCGTGATGTTTATTGGCGATATTTTTATTT
TCATTAAAATAATTATTGTCATTATAAATCAGGGGTGGGCACAGTTGTGT
GTCTTGGGTGCCACATTCATATGAAATCAATTTATTTTATCAAAACAGTG
TGCTTGGATTATGGTGCAATTTAAGTATATTGTTGAAATAAAGTCAAATA
CTTATTATTTACTATATTGATTTAACTTAAAAACATTATTTATTGAGAAT
TCCCAAATCAGAATAAATCAATCAAAACATTTAACAGAG
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protein sequence of SMED30007106-orf-1

>SMED30007106-orf-1 ID=SMED30007106-orf-1|Name=SMED30007106-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=369bp
MFMKINFIFVCYLTISIKSAEINSNVESDESPRKNDSNTNRNDQKMPSQF
SPNTAITVILNISTILPQKTSNSVSLNSFTSTNTRKETLLVNTTYTTLKT
KSKNPMKIHLTKTENPENPEKPKTNNNTHPIDVENSNKKKHPENSSKSKI
NNNTQTINPKNPNKAQAEHPKSSSKTKKNENAPTNSENSDKSQTKDQKTT
GNIKPHKKTESTNSSHHDKSLTTKQIETTIHETVLNPEESKKVDPFKMKT
TGSEKSQDSRVDNKLKKDEIKNSEDTNHLKRQKSQNLGETNDNSSSHFMI
FIFFGLLFTIVAYVAFQKRKKIMAYVIEGRRRTSRSRRTSGGKDSKVSYK
PLDSEDQEAGKNSYKYVY*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000026gut
PLANA:0000070intestinal phagocyte
PLANA:0003116parenchymal cell
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 147..169
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..52
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 106..290
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 331..360
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 234..282
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 331..368
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 200..225
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 177..199
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..19
score: 0.553
NoneNo IPR availableTMHMMTMhelixcoord: 297..316