LIM zinc-binding domain-containing protein

Overview
NameLIM zinc-binding domain-containing protein
Smed IDSMED30007060
Length (bp)1422
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of LIM zinc-binding domain-containing protein (SMED30007060) t-SNE clustered cells

Violin plots show distribution of expression levels for LIM zinc-binding domain-containing protein (SMED30007060) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of LIM zinc-binding domain-containing protein (SMED30007060) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for LIM zinc-binding domain-containing protein (SMED30007060) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30007060

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 10

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
intestinal phagocyteSMED30007060SMESG000025120.1 Contig4720GPL15192PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30007060SMESG000040062.1 Contig4720GPL15192PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
pharynxSMED30007060SMESG000040062.1 dd_Smed_v4_1625_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30007060SMESG000040062.1 dd_Smed_v4_1625_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30007060SMESG000040062.1 dd_Smed_v4_1625_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30007060SMESG000040062.1 dd_Smed_v4_1625_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30007060SMESG000040062.1 dd_Smed_v4_1625_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30007060SMESG000040062.1 Contig49346uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30007060SMESG000040062.1 Contig49346newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
epidermisSMED30007060SMESG000040062.1 dd_Smed_v4_1625_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Human
Match: LIMA1 (LIM domain and actin binding 1 [Source:HGNC Symbol;Acc:HGNC:24636])

HSP 1 Score: 72.0182 bits (175), Expect = 6.659e-13
Identity = 28/75 (37.33%), Postives = 45/75 (60.00%), Query Frame = 1 
Query:  568 LKDQSNSDSKCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDD 792
            +K Q+ +   C  CQKTVYPME++  + +++H +CFRC  C   LS          ++CKPH+ + F+ +G YD+
Sbjct:   77 MKFQAPARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDE 151
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Human
Match: LIMA1 (LIM domain and actin binding 1 [Source:HGNC Symbol;Acc:HGNC:24636])

HSP 1 Score: 72.4034 bits (176), Expect = 7.336e-13
Identity = 28/75 (37.33%), Postives = 45/75 (60.00%), Query Frame = 1 
Query:  568 LKDQSNSDSKCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDD 792
            +K Q+ +   C  CQKTVYPME++  + +++H +CFRC  C   LS          ++CKPH+ + F+ +G YD+
Sbjct:  219 MKFQAPARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDE 293
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Human
Match: LIMA1 (LIM domain and actin binding 1 [Source:HGNC Symbol;Acc:HGNC:24636])

HSP 1 Score: 70.8626 bits (172), Expect = 1.685e-12
Identity = 27/72 (37.50%), Postives = 43/72 (59.72%), Query Frame = 1 
Query:  577 QSNSDSKCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDD 792
            Q+ +   C  CQKTVYPME++  + +++H +CFRC  C   LS          ++CKPH+ + F+ +G YD+
Sbjct:   81 QAPARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDE 152
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Human
Match: LIMA1 (LIM domain and actin binding 1 [Source:HGNC Symbol;Acc:HGNC:24636])

HSP 1 Score: 71.2478 bits (173), Expect = 1.743e-12
Identity = 27/72 (37.50%), Postives = 43/72 (59.72%), Query Frame = 1 
Query:  577 QSNSDSKCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDD 792
            Q+ +   C  CQKTVYPME++  + +++H +CFRC  C   LS          ++CKPH+ + F+ +G YD+
Sbjct:  224 QAPARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDE 295
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Human
Match: LIMA1 (LIM domain and actin binding 1 [Source:HGNC Symbol;Acc:HGNC:24636])

HSP 1 Score: 71.2478 bits (173), Expect = 1.819e-12
Identity = 27/72 (37.50%), Postives = 43/72 (59.72%), Query Frame = 1 
Query:  577 QSNSDSKCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDD 792
            Q+ +   C  CQKTVYPME++  + +++H +CFRC  C   LS          ++CKPH+ + F+ +G YD+
Sbjct:  223 QAPARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDE 294
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Celegans
Match: mlp-1 (MLP/CRP family (Muscle LIM Protein/Cysteine-rich Protein) [Source:UniProtKB/TrEMBL;Acc:Q9GP96])

HSP 1 Score: 51.6026 bits (122), Expect = 2.774e-8
Identity = 26/77 (33.77%), Postives = 39/77 (50.65%), Query Frame = 1 
Query:  595 KCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDDIGIATPASDSA 825
            KC  C K+VY  E++S     +HK CF+C +C K+L    V   +  L+CK  +  KF  +G    +G     +DS 
Sbjct:   10 KCPKCGKSVYAAEEMSAGGYKWHKFCFKCNMCNKLLDSCTVAPHEAELYCKQCHGRKFGPKGVGFGLGAGCLTTDSG 86
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Celegans
Match: mlp-1 (MLP/CRP family (Muscle LIM Protein/Cysteine-rich Protein) [Source:UniProtKB/TrEMBL;Acc:Q9GP96])

HSP 1 Score: 51.6026 bits (122), Expect = 2.774e-8
Identity = 26/77 (33.77%), Postives = 39/77 (50.65%), Query Frame = 1 
Query:  595 KCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDDIGIATPASDSA 825
            KC  C K+VY  E++S     +HK CF+C +C K+L    V   +  L+CK  +  KF  +G    +G     +DS 
Sbjct:   10 KCPKCGKSVYAAEEMSAGGYKWHKFCFKCNMCNKLLDSCTVAPHEAELYCKQCHGRKFGPKGVGFGLGAGCLTTDSG 86
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Celegans
Match: mlp-1 (MLP/CRP family (Muscle LIM Protein/Cysteine-rich Protein) [Source:UniProtKB/TrEMBL;Acc:Q9GP96])

HSP 1 Score: 51.2174 bits (121), Expect = 4.795e-8
Identity = 26/77 (33.77%), Postives = 39/77 (50.65%), Query Frame = 1 
Query:  595 KCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDDIGIATPASDSA 825
            KC  C K+VY  E++S     +HK CF+C +C K+L    V   +  L+CK  +  KF  +G    +G     +DS 
Sbjct:   10 KCPKCGKSVYAAEEMSAGGYKWHKFCFKCNMCNKLLDSCTVAPHEAELYCKQCHGRKFGPKGVGFGLGAGCLTTDSG 86
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Celegans
Match: mlp-1 (MLP/CRP family (Muscle LIM Protein/Cysteine-rich Protein) [Source:UniProtKB/TrEMBL;Acc:Q9GP96])

HSP 1 Score: 51.2174 bits (121), Expect = 5.533e-8
Identity = 26/77 (33.77%), Postives = 39/77 (50.65%), Query Frame = 1 
Query:  595 KCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDDIGIATPASDSA 825
            KC  C K+VY  E++S     +HK CF+C +C K+L    V   +  L+CK  +  KF  +G    +G     +DS 
Sbjct:   10 KCPKCGKSVYAAEEMSAGGYKWHKFCFKCNMCNKLLDSCTVAPHEAELYCKQCHGRKFGPKGVGFGLGAGCLTTDSG 86
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Celegans
Match: mlp-1 (MLP/CRP family (Muscle LIM Protein/Cysteine-rich Protein) [Source:UniProtKB/TrEMBL;Acc:Q9GP96])

HSP 1 Score: 51.2174 bits (121), Expect = 5.602e-8
Identity = 25/82 (30.49%), Postives = 41/82 (50.00%), Query Frame = 1 
Query:  595 KCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDDIGIATPASDSAVTYQN 840
            KC  C K+VY  E++S     +HK CF+C +C K+L      + +  LFCK  +  ++  +G    IG  +   D+   + N
Sbjct:   10 KCPKCGKSVYAAEEMSAGGYKWHKFCFKCSMCNKLLDSMSCCEHQAQLFCKQCHCRRYGPKGIGFGIGAGSLTMDTGEQFGN 91
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Fly
Match: Mlp84B (gene:FBgn0014863 transcript:FBtr0346967)

HSP 1 Score: 51.6026 bits (122), Expect = 1.232e-6
Identity = 27/80 (33.75%), Postives = 41/80 (51.25%), Query Frame = 1 
Query:  595 KCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDDIGIATPASDSAVTY 834
            KC  C K+VY  E+      ++HKNCF+C +C K L  T  T+ +  L+CK  +  KF  +G     G  T + D+   +
Sbjct:   11 KCPRCGKSVYAAEERLAGGYVFHKNCFKCGMCNKSLDSTNCTEHERELYCKTCHGRKFGPKGYGFGTGAGTLSMDNGSQF 90
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Fly
Match: Mlp84B (gene:FBgn0014863 transcript:FBtr0081617)

HSP 1 Score: 51.6026 bits (122), Expect = 1.232e-6
Identity = 27/80 (33.75%), Postives = 41/80 (51.25%), Query Frame = 1 
Query:  595 KCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDDIGIATPASDSAVTY 834
            KC  C K+VY  E+      ++HKNCF+C +C K L  T  T+ +  L+CK  +  KF  +G     G  T + D+   +
Sbjct:   11 KCPRCGKSVYAAEERLAGGYVFHKNCFKCGMCNKSLDSTNCTEHERELYCKTCHGRKFGPKGYGFGTGAGTLSMDNGSQF 90
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Fly
Match: Mlp84B (gene:FBgn0014863 transcript:FBtr0081616)

HSP 1 Score: 51.6026 bits (122), Expect = 1.232e-6
Identity = 27/80 (33.75%), Postives = 41/80 (51.25%), Query Frame = 1 
Query:  595 KCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDDIGIATPASDSAVTY 834
            KC  C K+VY  E+      ++HKNCF+C +C K L  T  T+ +  L+CK  +  KF  +G     G  T + D+   +
Sbjct:   11 KCPRCGKSVYAAEERLAGGYVFHKNCFKCGMCNKSLDSTNCTEHERELYCKTCHGRKFGPKGYGFGTGAGTLSMDNGSQF 90
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Fly
Match: Mlp60A (gene:FBgn0259209 transcript:FBtr0344996)

HSP 1 Score: 46.9802 bits (110), Expect = 1.605e-6
Identity = 22/58 (37.93%), Postives = 31/58 (53.45%), Query Frame = 1 
Query:  595 KCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKF 768
            KC  C K+VY  E+       +HK CF+C +C K L  T  T+ +  LFCK  +  K+
Sbjct:   10 KCPACGKSVYAAEERVAGGYKFHKTCFKCSMCNKALDSTNCTEHEKELFCKNCHGRKY 67
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Fly
Match: Mlp60A (gene:FBgn0259209 transcript:FBtr0299696)

HSP 1 Score: 46.9802 bits (110), Expect = 1.605e-6
Identity = 22/58 (37.93%), Postives = 31/58 (53.45%), Query Frame = 1 
Query:  595 KCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKF 768
            KC  C K+VY  E+       +HK CF+C +C K L  T  T+ +  LFCK  +  K+
Sbjct:   10 KCPACGKSVYAAEERVAGGYKFHKTCFKCSMCNKALDSTNCTEHEKELFCKNCHGRKY 67
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Zebrafish
Match: xirp2a (xin actin binding repeat containing 2a [Source:ZFIN;Acc:ZDB-GENE-040108-7])

HSP 1 Score: 74.7146 bits (182), Expect = 9.434e-14
Identity = 28/65 (43.08%), Postives = 38/65 (58.46%), Query Frame = 1 
Query:  598 CDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDD 792
            C VC+K VYPME +  D + +HK CFRC  C   LS          ++CKPHY + F+ +G YD+
Sbjct:  266 CQVCRKRVYPMESLIADKQNFHKTCFRCAHCNSQLSLGTYASLHGRMYCKPHYKQLFKSKGNYDE 330
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Zebrafish
Match: lima1a (LIM domain and actin binding 1a [Source:ZFIN;Acc:ZDB-GENE-001120-1])

HSP 1 Score: 74.3294 bits (181), Expect = 9.588e-14
Identity = 28/65 (43.08%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:  598 CDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDD 792
            C  C KTVYP+EK+  + ++YH  CFRC  C   LS        +N++CKPHY + F+ +G YD+
Sbjct:  246 CVTCLKTVYPLEKLVANQQIYHNTCFRCAYCNTKLSLVNYASLHNNVYCKPHYCQLFKAKGNYDE 310
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Zebrafish
Match: limd2 (LIM domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-120906-1])

HSP 1 Score: 60.4622 bits (145), Expect = 6.553e-11
Identity = 24/65 (36.92%), Postives = 38/65 (58.46%), Query Frame = 1 
Query:  598 CDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDD 792
            C  C+KTVYPME++  ++ ++H  CF C  C   LS       +   +CKPH+ + F+ +G YD+
Sbjct:   27 CASCEKTVYPMERLVANNLIFHAACFCCKHCNTKLSLGSYAALQGEFYCKPHFQQLFKSKGNYDE 91
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Zebrafish
Match: xirp2b (xin actin binding repeat containing 2b [Source:ZFIN;Acc:ZDB-GENE-030521-26])

HSP 1 Score: 63.5438 bits (153), Expect = 6.882e-11
Identity = 27/65 (41.54%), Postives = 39/65 (60.00%), Query Frame = 1 
Query:  598 CDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDD 792
            C VC+K VYPME +  D K +HK+CF C  C+  LS         +L+C+PHY + F+ +G  +D
Sbjct:  137 CAVCKKRVYPMEGLIADKKKFHKSCFFCEHCKNKLSLGNFVSLHGHLYCQPHYKQLFKSKGNLED 201
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Zebrafish
Match: csrp1a (cysteine and glycine-rich protein 1a [Source:ZFIN;Acc:ZDB-GENE-030909-4])

HSP 1 Score: 57.7658 bits (138), Expect = 4.871e-10
Identity = 24/59 (40.68%), Postives = 38/59 (64.41%), Query Frame = 1 
Query:  592 SKCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKF 768
            +KC  CQKTVY  E+V  + + +H++CF C VC+K L  T V   ++ ++CK  Y +K+
Sbjct:    7 NKCGCCQKTVYFAEEVQCEGRSFHRSCFLCMVCRKNLDSTTVAVHENEIYCKACYGKKY 65
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Xenopus
Match: lima1 (LIM domain and actin binding 1 [Source:NCBI gene;Acc:779798])

HSP 1 Score: 71.633 bits (174), Expect = 1.277e-12
Identity = 27/65 (41.54%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:  598 CDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDD 792
            C  CQKTVYPME++  ++++YH  CFRC  C   LS          ++CKPH+ + F+ +G YD+
Sbjct:  356 CFSCQKTVYPMERLFANNQVYHNGCFRCSHCSTKLSLGTFASLHGTVYCKPHFNQLFKSKGNYDE 420
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Xenopus
Match: limd2 (uncharacterized loc100145002 [Source:Xenbase;Acc:XB-GENE-5749128])

HSP 1 Score: 64.6994 bits (156), Expect = 1.134e-11
Identity = 26/65 (40.00%), Postives = 37/65 (56.92%), Query Frame = 1 
Query:  598 CDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDD 792
            C  CQKTVYPME++  D  ++H +CF C  C   LS           +CKPH+ + F+ +G YD+
Sbjct:   88 CSSCQKTVYPMERLVADKHIFHNSCFCCKHCSAKLSLGTYAALHGEFYCKPHFQQLFKSKGNYDE 152
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Xenopus
Match: ENSXETT00000049904.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:9:64558417:64561350:-1 gene:ENSXETG00000020789.1 transcript:ENSXETT00000049904.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 59.3066 bits (142), Expect = 4.356e-10
Identity = 25/65 (38.46%), Postives = 38/65 (58.46%), Query Frame = 1 
Query:  598 CDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDD 792
            C +CQK VYPME +  D +++H +CFRC  C   LS          ++CK H+ + F+ +G YD+
Sbjct:   10 CIICQKKVYPMECLVADKQIFHNSCFRCSHCSNKLSLGNYASLHGQIYCKAHFKQLFKSKGNYDE 74
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Xenopus
Match: csrp1 (cysteine and glycine rich protein 1 [Source:NCBI gene;Acc:448688])

HSP 1 Score: 57.3806 bits (137), Expect = 5.674e-9
Identity = 29/79 (36.71%), Postives = 42/79 (53.16%), Query Frame = 1 
Query:  583 NSDSKCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDDIGIATPASD 819
                KC VCQK+VY  E+V  +   +HK+CF C VC+K L  T V    + ++CK  Y +K+  +G     G  T + D
Sbjct:    5 GGGKKCTVCQKSVYFAEEVQCEGGSFHKSCFLCMVCKKNLDSTTVAIHGEEIYCKSCYGKKYGPKGYGFGQGAGTLSMD 83

HSP 2 Score: 48.1358 bits (113), Expect = 6.463e-6
Identity = 23/57 (40.35%), Postives = 29/57 (50.88%), Query Frame = 1 
Query:  598 CDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKF 768
            C  C K+VY  EKV      +H+ CFRC  C K L  T V     ++FCK  Y + F
Sbjct:  119 CPRCSKSVYAAEKVIGAGNSWHRTCFRCSKCGKGLESTTVADRDGDIFCKACYAKNF 175
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Xenopus
Match: pde9a (phosphodiesterase 9A [Source:Xenbase;Acc:XB-GENE-5917012])

HSP 1 Score: 56.225 bits (134), Expect = 1.429e-8
Identity = 26/81 (32.10%), Postives = 41/81 (50.62%), Query Frame = 1 
Query:  583 NSDSKCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDDIGIATPASDSA 825
               +KC  C KTVY  E++  + + +HK CF C VC+K L  T V   +  ++CK  Y  K+  +G     G    ++D+ 
Sbjct:    5 GGGAKCGACDKTVYHAEEIQCNGRSFHKPCFICMVCRKALDSTTVAAHESEIYCKSCYGRKYGPKGYGYGQGAGCLSTDTG 85

HSP 2 Score: 56.225 bits (134), Expect = 1.498e-8
Identity = 26/66 (39.39%), Postives = 36/66 (54.55%), Query Frame = 1 
Query:  583 NSDSKCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRG 780
             +  KC  CQK+VY  E+V    + +HK CFRC  C K L  T VT+    ++CK  Y + F  +G
Sbjct:  115 GATEKCPRCQKSVYAAERVMGGGQPWHKTCFRCAFCGKSLDSTTVTEKDGEIYCKVCYAKSFGPKG 180
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Mouse
Match: Lima1 (LIM domain and actin binding 1 [Source:MGI Symbol;Acc:MGI:1920992])

HSP 1 Score: 71.633 bits (174), Expect = 7.978e-13
Identity = 27/72 (37.50%), Postives = 43/72 (59.72%), Query Frame = 1 
Query:  577 QSNSDSKCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDD 792
            Q+ +   C  CQKTVYPME++  + +++H +CFRC  C   LS          ++CKPH+ + F+ +G YD+
Sbjct:  221 QAPAKESCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDE 292
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Mouse
Match: Lima1 (LIM domain and actin binding 1 [Source:MGI Symbol;Acc:MGI:1920992])

HSP 1 Score: 71.633 bits (174), Expect = 8.645e-13
Identity = 27/72 (37.50%), Postives = 43/72 (59.72%), Query Frame = 1 
Query:  577 QSNSDSKCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDD 792
            Q+ +   C  CQKTVYPME++  + +++H +CFRC  C   LS          ++CKPH+ + F+ +G YD+
Sbjct:  381 QAPAKESCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDE 452
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Mouse
Match: Xirp2 (xin actin-binding repeat containing 2 [Source:MGI Symbol;Acc:MGI:2685198])

HSP 1 Score: 69.707 bits (169), Expect = 5.123e-12
Identity = 28/65 (43.08%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:  598 CDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDD 792
            C +CQKTVYPME +  D + +HK+CFRC  C   LS          ++CKPH+ + F+ +G YD+
Sbjct: 3257 CIICQKTVYPMECLIADKQNFHKSCFRCHHCSSKLSLGNYASLHGRIYCKPHFKQLFKSKGNYDE 3321
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Mouse
Match: Xirp2 (xin actin-binding repeat containing 2 [Source:MGI Symbol;Acc:MGI:2685198])

HSP 1 Score: 69.3218 bits (168), Expect = 5.184e-12
Identity = 28/65 (43.08%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:  598 CDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDD 792
            C +CQKTVYPME +  D + +HK+CFRC  C   LS          ++CKPH+ + F+ +G YD+
Sbjct:  174 CIICQKTVYPMECLIADKQNFHKSCFRCHHCSSKLSLGNYASLHGRIYCKPHFKQLFKSKGNYDE 238
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Mouse
Match: Xirp2 (xin actin-binding repeat containing 2 [Source:MGI Symbol;Acc:MGI:2685198])

HSP 1 Score: 69.3218 bits (168), Expect = 6.244e-12
Identity = 28/65 (43.08%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:  598 CDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDD 792
            C +CQKTVYPME +  D + +HK+CFRC  C   LS          ++CKPH+ + F+ +G YD+
Sbjct:  403 CIICQKTVYPMECLIADKQNFHKSCFRCHHCSSKLSLGNYASLHGRIYCKPHFKQLFKSKGNYDE 467
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. UniProt/SwissProt
Match: sp|P29675|SF3_HELAN (Pollen-specific protein SF3 OS=Helianthus annuus OX=4232 GN=SF3 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.482e-12
Identity = 29/77 (37.66%), Postives = 45/77 (58.44%), Query Frame = 1 
Query:  595 KCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDDI----GIATPA 813
            KC+ C K VYP+E+V +D   YH+ CF+CC     +SP+     +  L+CK H+I+ F+ +G Y  +     +A PA
Sbjct:  109 KCNACAKIVYPIERVKVDGTAYHRACFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLFKKKGNYSQLEVEETVAAPA 185

HSP 2 Score: 57.7658 bits (138), Expect = 3.215e-8
Identity = 26/81 (32.10%), Postives = 44/81 (54.32%), Query Frame = 1 
Query:  568 LKDQSNSDSKCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDDIGIATP 810
            +K  + +  KC VC+KTVY ++K+  + ++YHK CFRC  C   L  +    F   ++C+ H+ + F+  G  +     TP
Sbjct:    1 MKSFTGTTQKCTVCEKTVYLVDKLVANQRVYHKACFRCHHCNSTLKLSNFNSFDGVVYCRHHFDQLFKRTGSLEKSFDGTP 81
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. UniProt/SwissProt
Match: sp|Q9ERG0|LIMA1_MOUSE (LIM domain and actin-binding protein 1 OS=Mus musculus OX=10090 GN=Lima1 PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 6.047e-12
Identity = 27/72 (37.50%), Postives = 43/72 (59.72%), Query Frame = 1 
Query:  577 QSNSDSKCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDD 792
            Q+ +   C  CQKTVYPME++  + +++H +CFRC  C   LS          ++CKPH+ + F+ +G YD+
Sbjct:  381 QAPAKESCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDE 452
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. UniProt/SwissProt
Match: sp|F1LR10|LIMA1_RAT (LIM domain and actin-binding protein 1 OS=Rattus norvegicus OX=10116 GN=Lima1 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 7.877e-12
Identity = 28/74 (37.84%), Postives = 44/74 (59.46%), Query Frame = 1 
Query:  571 KDQSNSDSKCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDD 792
            K Q+ +   C  CQKTVYPME++  + +++H +CFRC  C   LS          ++CKPH+ + F+ +G YD+
Sbjct:  379 KFQAPARESCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDE 452
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. UniProt/SwissProt
Match: sp|Q9UHB6|LIMA1_HUMAN (LIM domain and actin-binding protein 1 OS=Homo sapiens OX=9606 GN=LIMA1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.249e-12
Identity = 27/72 (37.50%), Postives = 43/72 (59.72%), Query Frame = 1 
Query:  577 QSNSDSKCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDD 792
            Q+ +   C  CQKTVYPME++  + +++H +CFRC  C   LS          ++CKPH+ + F+ +G YD+
Sbjct:  383 QAPARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDE 454
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. UniProt/SwissProt
Match: sp|B0KYV5|LIMA1_PIG (LIM domain and actin-binding protein 1 OS=Sus scrofa OX=9823 GN=LIMA1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.090e-11
Identity = 28/74 (37.84%), Postives = 44/74 (59.46%), Query Frame = 1 
Query:  571 KDQSNSDSKCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDD 792
            K Q+ +   C  CQKTVYPME++  + +++H +CFRC  C   LS          ++CKPH+ + F+ +G YD+
Sbjct:  377 KFQAPARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDE 450
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. TrEMBL
Match: A0A2G8L1L3 (Putative enolase-phosphatase E1 isoform X5 OS=Stichopus japonicus OX=307972 GN=BSL78_09023 PE=4 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.571e-15
Identity = 49/137 (35.77%), Postives = 76/137 (55.47%), Query Frame = 1 
Query:  391 ESEKSNGGNITQEAEQTPFVI--KEIEKCPKQNDTDNFIVKQSDSEHXXXXXXXXXXXXXXLKDQSNSDS--KCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYD 789
            ES KS GG+ T   + + F +  K+ E         NF +K++D   +S+            + QS++DS  KC VC+K VYPM+K++ D + YHK CFRC  C+K+L+     +     FCKPH+ ++F++ G YD
Sbjct:  142 ESPKSGGGS-TNRLDMSKFALFQKKSEDSTDSPPKKNFTIKKADPAKKSRFGN---------QGQSSTDSSNKCHVCEKRVYPMDKIAADGRSYHKTCFRCAECKKVLNLGTFAQLNSVTFCKPHFKQRFKLHGNYD 268
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. TrEMBL
Match: G7YPY5 (LIM domain and actin-binding protein 1 OS=Clonorchis sinensis OX=79923 GN=CLF_106432 PE=4 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.921e-14
Identity = 50/156 (32.05%), Postives = 82/156 (52.56%), Query Frame = 1 
Query:  568 LKDQSNSDSKCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDDIGIATPASDSAVTYQNDYKPVIQQTTYQFXXXXXXXXXXXXKKTDYPSSKFVGTKDLASRFQESPDDHSEDNIGRKQPIDI 1035
            +  Q+N   +C  CQK VYP+E + +  +++HK+CFRC  CQ++LS         + +C+PHY+E FR RG++   G+   A D AV   +DY  ++ QT  Q       SS+      D P  +   T+ L ++FQ+  +     +  R +P+ I
Sbjct:  161 ISSQANEKPRCSACQKVVYPLEGLHVMDRVFHKSCFRCRKCQRILSVRTFNVGNGHPYCEPHYVELFRARGRF---GVT--ARDKAVEEDDDY--LLHQTAIQ-------SSTPAETAKDRPPPRV--TQTLVAKFQQMSNVSKSSHDVRGEPLTI 300
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. TrEMBL
Match: A0A5N6PGP2 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_08243 PE=4 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.390e-14
Identity = 35/84 (41.67%), Postives = 51/84 (60.71%), Query Frame = 1 
Query:  580 SNSDSKCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDDIGIATPASDSAVT 831
            S +  KC VC+KTVYP+EKV+++ + YHK CFRC      L+P+     + NLFCKPH+ + F+ +G Y  +  A     +A T
Sbjct:   86 SGTQDKCAVCKKTVYPLEKVTVEGEFYHKGCFRCTQGGCFLTPSNYAALEGNLFCKPHFSQLFKEKGSYAHLKQAATLKKTAAT 169

HSP 2 Score: 65.855 bits (159), Expect = 1.179e-8
Identity = 27/62 (43.55%), Postives = 39/62 (62.90%), Query Frame = 1 
Query:  595 KCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRG 780
            KC VC+KTVY +E ++ D   YH  CF+C  C   L+ +  +  +  LFCKPH+ +KF+ RG
Sbjct:    9 KCKVCEKTVYFLEMITADGVTYHNTCFKCSQCNGKLTISTYSSLEGVLFCKPHFEQKFKERG 70
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. TrEMBL
Match: A0A0D2WXB8 (LIMD2 protein OS=Capsaspora owczarzaki (strain ATCC 30864) OX=595528 GN=CAOG_007267 PE=4 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.709e-14
Identity = 31/64 (48.44%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:  598 CDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYD 789
            C++C KTVYPME++S D  +YHK CFRC  C+K+LS    +     +FCKPH+ + F+ +G YD
Sbjct:   21 CEICDKTVYPMEQISADGHIYHKTCFRCQECKKILSLGAYSAVAGQVFCKPHFTQIFKTKGNYD 84
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. TrEMBL
Match: A0A5N6PFJ9 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_08215 PE=4 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.546e-14
Identity = 35/84 (41.67%), Postives = 51/84 (60.71%), Query Frame = 1 
Query:  580 SNSDSKCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDDIGIATPASDSAVT 831
            S +  KC VC+KTVYP+EKV+++ + YHK CFRC      L+P+     + NLFCKPH+ + F+ +G Y  +  A     +A T
Sbjct:  157 SGTQDKCAVCKKTVYPLEKVTVEGEFYHKGCFRCTQGGCFLTPSNYAALEGNLFCKPHFSQLFKEKGSYAHLKQAATLKKTAAT 240
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Cavefish
Match: lima1a (LIM domain and actin binding 1a [Source:ZFIN;Acc:ZDB-GENE-001120-1])

HSP 1 Score: 69.707 bits (169), Expect = 2.631e-12
Identity = 25/65 (38.46%), Postives = 39/65 (60.00%), Query Frame = 1 
Query:  598 CDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDD 792
            C +C KTVYP+E++  + ++YH  CFRC  C   LS          ++CKPH+ + F+ +G YD+
Sbjct:  313 CVMCLKTVYPLERLVANQQIYHNTCFRCAHCNTKLSLVNYASLHSTVYCKPHFCQLFKAKGNYDE 377
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Cavefish
Match: limd2 (LIM domain containing 2 [Source:NCBI gene;Acc:103034267])

HSP 1 Score: 63.929 bits (154), Expect = 3.040e-12
Identity = 26/65 (40.00%), Postives = 38/65 (58.46%), Query Frame = 1 
Query:  598 CDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDD 792
            C  CQKTVYPME++  ++ ++H  CF C  C   LS       +   +CKPHY + F+ +G YD+
Sbjct:   27 CAACQKTVYPMERLVANNLIFHTVCFCCKHCNAKLSLGTYAALQGEFYCKPHYQQLFKSKGNYDE 91
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Cavefish
Match: csrp3 (cysteine and glycine-rich protein 3 (cardiac LIM protein) [Source:ZFIN;Acc:ZDB-GENE-041010-119])

HSP 1 Score: 58.151 bits (139), Expect = 1.105e-9
Identity = 28/74 (37.84%), Postives = 39/74 (52.70%), Query Frame = 1 
Query:  583 NSDSKCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGK-YDDIGI 801
             S  +C  C K VY  EK+    K +HK CFRC +C K L  T VT     L+CK  Y + F  +G+   ++G+
Sbjct:   89 GSTDRCPRCSKAVYAAEKIMGAGKPWHKTCFRCLLCGKSLESTTVTDKDGELYCKVCYAKNFGPKGRGLGNMGV 162
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Cavefish
Match: csrp3 (cysteine and glycine-rich protein 3 (cardiac LIM protein) [Source:ZFIN;Acc:ZDB-GENE-041010-119])

HSP 1 Score: 56.225 bits (134), Expect = 4.542e-9
Identity = 28/75 (37.33%), Postives = 39/75 (52.00%), Query Frame = 1 
Query:  583 NSDSKCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGK-YDDIGIA 804
             S  +C  C K VY  EK+    K +HK CFRC +C K L  T VT     L+CK  Y + F  +G+   ++G+ 
Sbjct:   91 GSTDRCPRCSKAVYAAEKIMGAGKPWHKTCFRCLLCGKSLESTTVTDKDGELYCKVCYAKNFGPKGRGLGNMGVV 165
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Cavefish
Match: ENSAMXT00000039349.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02002046.1:85295:87115:1 gene:ENSAMXG00000034965.1 transcript:ENSAMXT00000039349.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 55.8398 bits (133), Expect = 8.115e-9
Identity = 28/77 (36.36%), Postives = 39/77 (50.65%), Query Frame = 1 
Query:  577 QSNSDSKCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDDIGIAT 807
            Q    ++C+ C + VY  E+V  D K +HK CF C VC+K L  T V      L+CK  Y +K+  +G     G  T
Sbjct:    3 QWGGGNRCESCGEKVYHAEEVQCDGKNFHKCCFLCSVCRKGLDSTTVANHDTELYCKSCYGKKYGPKGYGYGQGAGT 79
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Sea Lamprey
Match: csrp2 (cysteine and glycine-rich protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1863])

HSP 1 Score: 61.2326 bits (147), Expect = 3.295e-11
Identity = 25/69 (36.23%), Postives = 37/69 (53.62%), Query Frame = 1 
Query:  574 DQSNSDSKCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRG 780
             Q    + C  C K V+  E+V  D + YH+ CF+C VC K L  + VT   D ++C+P Y  K+  +G
Sbjct:    2 SQWGGGAHCGTCGKVVFHAEEVQCDGRSYHRPCFQCLVCHKALETSTVTVHGDEIYCQPCYSRKYGPKG 70

HSP 2 Score: 53.5286 bits (127), Expect = 1.330e-8
Identity = 30/78 (38.46%), Postives = 37/78 (47.44%), Query Frame = 1 
Query:  598 CDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDDIGIATPASDSAVT 831
            C  C K VY  EK+    K +HK+CFRC  C K L  T VT     L+CK  Y + F  +G    +G    A   A T
Sbjct:  119 CSRCTKPVYAAEKIVGAGKPWHKSCFRCAKCGKGLESTTVTDRDGELYCKGCYAKYFGPKG----VGFGQGAGALAHT 192
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Sea Lamprey
Match: csrp2 (cysteine and glycine-rich protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1863])

HSP 1 Score: 57.3806 bits (137), Expect = 6.738e-10
Identity = 30/96 (31.25%), Postives = 48/96 (50.00%), Query Frame = 1 
Query:  592 SKCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDDIGIATPASDSA--VTYQNDYKPVIQQTTY 873
            ++C  C K VY  E+V  D + YH+ CFRC VC+K L  T +    D +FC+  Y +K   +G     G    ++D    +  + + +P   Q T+
Sbjct:    9 ARCGRCAKAVYQAEEVICDGQRYHRLCFRCSVCRKGLDSTTLATHGDEIFCRSCYGKKLGPKGYGYGQGAGVLSTDRGERLGIRPEEQPGAPQPTF 104

HSP 2 Score: 50.0618 bits (118), Expect = 2.015e-7
Identity = 25/71 (35.21%), Postives = 36/71 (50.70%), Query Frame = 1 
Query:  595 KCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDDIGIAT 807
            KC  C ++VY  EKV    K +H++CFRC  C K L  T +      ++CK  Y + F  +G    +G  T
Sbjct:  120 KCPRCSQSVYAAEKVMGAGKPWHRSCFRCKQCGKSLESTTLNDNDGEIYCKACYAKNFGPKGVGYGLGAGT 190
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Sea Lamprey
Match: csrp2 (cysteine and glycine-rich protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1863])

HSP 1 Score: 56.9954 bits (136), Expect = 9.592e-10
Identity = 27/76 (35.53%), Postives = 40/76 (52.63%), Query Frame = 1 
Query:  592 SKCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDDIGIATPASD 819
            ++C  C K VY  E+V  D + YH+ CFRC VC+K L  T +    D +FC+  Y +K   +G     G    ++D
Sbjct:    9 ARCGRCAKAVYQAEEVICDGQRYHRLCFRCSVCRKGLDSTTLATHGDEIFCRSCYGKKLGPKGYGYGQGAGVLSTD 84

HSP 2 Score: 49.6766 bits (117), Expect = 2.269e-7
Identity = 25/71 (35.21%), Postives = 36/71 (50.70%), Query Frame = 1 
Query:  595 KCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDDIGIAT 807
            KC  C ++VY  EKV    K +H++CFRC  C K L  T +      ++CK  Y + F  +G    +G  T
Sbjct:  119 KCPRCSQSVYAAEKVMGAGKPWHRSCFRCKQCGKSLESTTLNDNDGEIYCKACYAKNFGPKGVGYGLGAGT 189
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Sea Lamprey
Match: csrp2 (cysteine and glycine-rich protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1863])

HSP 1 Score: 54.6842 bits (130), Expect = 5.866e-9
Identity = 29/84 (34.52%), Postives = 39/84 (46.43%), Query Frame = 1 
Query:  574 DQSNSDSKCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDDIGIATPASDSA 825
             Q    + C VC + VY  E+V      +HK+CF C VC+K L  T V      +FCK  Y +K   +G     G  T + DS 
Sbjct:    2 SQWGGGAACGVCNQRVYHAEEVQCAGGSFHKSCFLCQVCRKNLDSTTVASHGSEIFCKSCYAKKHGPKGYGYGQGAGTLSMDSG 85

HSP 2 Score: 53.1434 bits (126), Expect = 1.976e-8
Identity = 25/58 (43.10%), Postives = 31/58 (53.45%), Query Frame = 1 
Query:  595 KCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKF 768
            KC  C K+VY  E+V    K +HK CFRC  C K L  T VT     ++CK  Y + F
Sbjct:  122 KCSRCDKSVYAAERVIGGGKPWHKQCFRCAKCGKGLESTTVTDKDGEIYCKACYAKNF 179
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Sea Lamprey
Match: mical3b (Danio rerio microtubule associated monooxygenase, calponin and LIM domain containing 3b (mical3b), mRNA. [Source:RefSeq mRNA;Acc:NM_001353875])

HSP 1 Score: 48.9062 bits (115), Expect = 2.584e-6
Identity = 22/63 (34.92%), Postives = 33/63 (52.38%), Query Frame = 1 
Query:  598 CDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVT-KFKDN-LFCKPHYIEKFRIRG 780
            C  C + VY ME++S + K +H+ CF+C  C   L         +D   +CKPHY   +R+ G
Sbjct:  761 CYFCGRRVYVMERLSAEGKFFHRGCFKCNYCDVTLRLGAFAFDVEDGKFYCKPHYC--YRLSG 821
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Nematostella
Match: EDO50008 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RF11])

HSP 1 Score: 73.9442 bits (180), Expect = 3.334e-16
Identity = 29/66 (43.94%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:  595 KCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDD 792
            KC+VC KTVYPME+++ D K+YHK CF+C  C   L        +  ++CKPH+ + F+++G YD+
Sbjct:   21 KCEVCNKTVYPMERLAADKKVYHKFCFKCNECNNTLRLGNYAALQGKVYCKPHFKQLFKVKGNYDE 86
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Nematostella
Match: LASP3 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RI32])

HSP 1 Score: 50.8322 bits (120), Expect = 2.595e-7
Identity = 22/56 (39.29%), Postives = 31/56 (55.36%), Query Frame = 1 
Query:  589 DSKCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHY 756
            + +C  C KTVY  EK++   K++HK CFRC VC   L+      +  N +C  HY
Sbjct:    2 NPQCTKCAKTVYSQEKLNCLDKIWHKTCFRCVVCNMALNMKNYKGYNKNPYCNAHY 57
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Nematostella
Match: LASP1 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RI30])

HSP 1 Score: 50.447 bits (119), Expect = 2.895e-7
Identity = 21/53 (39.62%), Postives = 31/53 (58.49%), Query Frame = 1 
Query:  598 CDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHY 756
            C  C+KTVYP+EK+S   K++HK CF+C  C   L+      ++   +C  HY
Sbjct:    5 CARCRKTVYPVEKLSCLDKVWHKGCFKCESCGMTLNMKTYKGYQKLPYCDAHY 57
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Nematostella
Match: LASP2 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RI31])

HSP 1 Score: 49.2914 bits (116), Expect = 1.155e-6
Identity = 20/56 (35.71%), Postives = 31/56 (55.36%), Query Frame = 1 
Query:  589 DSKCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHY 756
            + +C  C KTVYP+EK++   K++HK CF C +C   L+      +    +C  HY
Sbjct:    2 NPQCAKCAKTVYPVEKLNCLDKIWHKKCFTCQICNMTLNMKTYKGYNKYPYCNAHY 57
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Nematostella
Match: EDO49937 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RFC8])

HSP 1 Score: 43.5134 bits (101), Expect = 8.185e-6
Identity = 21/67 (31.34%), Postives = 30/67 (44.78%), Query Frame = 1 
Query:  568 LKDQSNSDSKCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKF 768
            +  +     KC  C KTVY  E  ++    +HK CF C  C K L  T V      ++C   Y ++F
Sbjct:    1 MSSKYGGGPKCPKCDKTVYSAEGQALLGMTFHKRCFTCTTCNKSLDSTTVADRGGTIYCNSCYGKEF 67
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Medaka
Match: lima1a (LIM domain and actin-binding protein 1 [Source:NCBI gene;Acc:101156656])

HSP 1 Score: 71.2478 bits (173), Expect = 8.511e-13
Identity = 26/65 (40.00%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:  598 CDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDD 792
            C  CQKTVYP+E++  +  +YH +CFRC  C   LS        + ++CKPH+ + F+ +G YD+
Sbjct:  294 CVTCQKTVYPLERLVANQHVYHSSCFRCSHCNTKLSLVNYASLHNVVYCKPHFCQLFKAKGNYDE 358
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Medaka
Match: lima1a (LIM domain and actin-binding protein 1 [Source:NCBI gene;Acc:101156656])

HSP 1 Score: 71.2478 bits (173), Expect = 1.045e-12
Identity = 26/65 (40.00%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:  598 CDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDD 792
            C  CQKTVYP+E++  +  +YH +CFRC  C   LS        + ++CKPH+ + F+ +G YD+
Sbjct:  271 CVTCQKTVYPLERLVANQHVYHSSCFRCSHCNTKLSLVNYASLHNVVYCKPHFCQLFKAKGNYDE 335
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Medaka
Match: lima1a (LIM domain and actin-binding protein 1 [Source:NCBI gene;Acc:101156656])

HSP 1 Score: 71.2478 bits (173), Expect = 1.117e-12
Identity = 26/65 (40.00%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:  598 CDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDD 792
            C  CQKTVYP+E++  +  +YH +CFRC  C   LS        + ++CKPH+ + F+ +G YD+
Sbjct:  356 CVTCQKTVYPLERLVANQHVYHSSCFRCSHCNTKLSLVNYASLHNVVYCKPHFCQLFKAKGNYDE 420
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Medaka
Match: limd2 (LIM domain containing 2 [Source:NCBI gene;Acc:101173786])

HSP 1 Score: 61.2326 bits (147), Expect = 2.866e-11
Identity = 24/65 (36.92%), Postives = 39/65 (60.00%), Query Frame = 1 
Query:  598 CDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDD 792
            C  C+KTVYPME++  + +++H +CF C  C   LS       +   +CKPH+ + F+ +G YD+
Sbjct:   28 CTSCEKTVYPMERLVANDQVFHLSCFCCKHCNAKLSLGTFAALQGEFYCKPHFQQLFKSKGNYDE 92
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000019196.2 (LIM domain and actin-binding protein 1 [Source:NCBI gene;Acc:101163320])

HSP 1 Score: 66.6254 bits (161), Expect = 2.867e-11
Identity = 27/65 (41.54%), Postives = 39/65 (60.00%), Query Frame = 1 
Query:  598 CDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDD 792
            C VCQKTV+ +E++     +YHK+CFRC  C   LS         N +CKPH+ + F+ +G YD+
Sbjct:  287 CVVCQKTVFQLERLMSHQHVYHKHCFRCFHCNTKLSLMNYASLHGNNYCKPHFSQLFKAKGNYDE 351
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Planmine SMEST
Match: SMESG000040062.1 (SMESG000040062.1)

HSP 1 Score: 610.142 bits (1572), Expect = 0.000e+0
Identity = 343/343 (100.00%), Postives = 343/343 (100.00%), Query Frame = 1 
Query:  181 FKSQLSPIAMENNLIDNANYSDTELDKNALINCDFSEEIKTDKTSNDELGNNNCDFNTDDVLINFQDNHDESEKSNGGNITQEAEQTPFVIKEIEKCPKQNDTDNFIVKQSDSEHXXXXXXXXXXXXXXLKDQSNSDSKCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDDIGIATPASDSAVTYQNDYKPVIQQTTYQFXXXXXXXXXXXXKKTDYPSSKFVGTKDLASRFQESPDDHSEDNIGRKQPIDIGSQRRVSDATKAWRENQQERQANFKRGXXXXXXXXXXXXXXXXKGSVKNLKALFEQRN 1209
            FKSQLSPIAMENNLIDNANYSDTELDKNALINCDFSEEIKTDKTSNDELGNNNCDFNTDDVLINFQDNHDESEKSNGGNITQEAEQTPFVIKEIEKCPKQNDTDNFIVKQSDSEHQSQSKKTKTSFQSKLKDQSNSDSKCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDDIGIATPASDSAVTYQNDYKPVIQQTTYQFSNSSSSSSSSNNKKTDYPSSKFVGTKDLASRFQESPDDHSEDNIGRKQPIDIGSQRRVSDATKAWRENQQERQANFKRGNSNNNNSIDSDVNQVSKGSVKNLKALFEQRN
Sbjct:   21 FKSQLSPIAMENNLIDNANYSDTELDKNALINCDFSEEIKTDKTSNDELGNNNCDFNTDDVLINFQDNHDESEKSNGGNITQEAEQTPFVIKEIEKCPKQNDTDNFIVKQSDSEHQSQSKKTKTSFQSKLKDQSNSDSKCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDDIGIATPASDSAVTYQNDYKPVIQQTTYQFSNSSSSSSSSNNKKTDYPSSKFVGTKDLASRFQESPDDHSEDNIGRKQPIDIGSQRRVSDATKAWRENQQERQANFKRGNSNNNNSIDSDVNQVSKGSVKNLKALFEQRN 363
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Planmine SMEST
Match: SMESG000001219.1 (SMESG000001219.1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.029e-18
Identity = 32/66 (48.48%), Postives = 49/66 (74.24%), Query Frame = 1 
Query:  598 CDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDDI 795
            C +C+  +YPMEK+++D +LYHK CFRC  C+ +LS T      ++++CK H++E F+IRGKYDD+
Sbjct:   92 CLICESKIYPMEKLTVDGRLYHKGCFRCSKCKTVLSVTNFNLSNNSIYCKIHFMELFKIRGKYDDV 157
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Planmine SMEST
Match: SMESG000044487.1 (SMESG000044487.1)

HSP 1 Score: 75.485 bits (184), Expect = 1.920e-14
Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:  598 CDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDDI 795
            C VC K VYPMEK+  + K +HK CFRC  C+  LS    +  +   +C PHYIE F+ RG+YD++
Sbjct:  203 CCVCNKKVYPMEKLVANDKTFHKTCFRCSKCKSALSTGNYSFNQQRPYCTPHYIELFKKRGRYDEV 268
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Planmine SMEST
Match: SMESG000026096.1 (SMESG000026096.1)

HSP 1 Score: 69.707 bits (169), Expect = 1.903e-12
Identity = 27/69 (39.13%), Postives = 43/69 (62.32%), Query Frame = 1 
Query:  589 DSKCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIEKFRIRGKYDDI 795
            ++ C  C + VY  EK+ +D+ LYH+ CF+C  C+++LS          L+CKPH++E FR  GKY++ 
Sbjct:  202 ENNCTSCGEKVYITEKLVIDNLLYHRQCFKCMKCRRILSMNNFASNSGRLYCKPHFLELFRQSGKYNEF 270
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Planmine SMEST
Match: SMESG000072162.1 (SMESG000072162.1)

HSP 1 Score: 45.8246 bits (107), Expect = 1.785e-6
Identity = 22/61 (36.07%), Postives = 35/61 (57.38%), Query Frame = 1 
Query:  580 SNSDSKCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVTKFKDNLFCKPHYIE 762
            ++++ KC  CQK+VY  E++   S ++H+ CFRC  C   L      + K  L+CK H+ E
Sbjct:    4 TSTNEKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCKKHFNE 64
The following BLAST results are available for this feature:
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
LIMA16.659e-1337.33LIM domain and actin binding 1 [Source:HGNC Symbol... [more]
LIMA17.336e-1337.33LIM domain and actin binding 1 [Source:HGNC Symbol... [more]
LIMA11.685e-1237.50LIM domain and actin binding 1 [Source:HGNC Symbol... [more]
LIMA11.743e-1237.50LIM domain and actin binding 1 [Source:HGNC Symbol... [more]
LIMA11.819e-1237.50LIM domain and actin binding 1 [Source:HGNC Symbol... [more]
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BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5
Match NameE-valueIdentityDescription
mlp-12.774e-833.77MLP/CRP family (Muscle LIM Protein/Cysteine-rich P... [more]
mlp-12.774e-833.77MLP/CRP family (Muscle LIM Protein/Cysteine-rich P... [more]
mlp-14.795e-833.77MLP/CRP family (Muscle LIM Protein/Cysteine-rich P... [more]
mlp-15.533e-833.77MLP/CRP family (Muscle LIM Protein/Cysteine-rich P... [more]
mlp-15.602e-830.49MLP/CRP family (Muscle LIM Protein/Cysteine-rich P... [more]
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BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Mlp84B1.232e-633.75gene:FBgn0014863 transcript:FBtr0346967[more]
Mlp84B1.232e-633.75gene:FBgn0014863 transcript:FBtr0081617[more]
Mlp84B1.232e-633.75gene:FBgn0014863 transcript:FBtr0081616[more]
Mlp60A1.605e-637.93gene:FBgn0259209 transcript:FBtr0344996[more]
Mlp60A1.605e-637.93gene:FBgn0259209 transcript:FBtr0299696[more]
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BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
xirp2a9.434e-1443.08xin actin binding repeat containing 2a [Source:ZFI... [more]
lima1a9.588e-1443.08LIM domain and actin binding 1a [Source:ZFIN;Acc:Z... [more]
limd26.553e-1136.92LIM domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-... [more]
xirp2b6.882e-1141.54xin actin binding repeat containing 2b [Source:ZFI... [more]
csrp1a4.871e-1040.68cysteine and glycine-rich protein 1a [Source:ZFIN;... [more]
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BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
lima11.277e-1241.54LIM domain and actin binding 1 [Source:NCBI gene;A... [more]
limd21.134e-1140.00uncharacterized loc100145002 [Source:Xenbase;Acc:X... [more]
ENSXETT00000049904.14.356e-1038.46pep primary_assembly:Xenopus_tropicalis_v9.1:9:645... [more]
csrp15.674e-936.71cysteine and glycine rich protein 1 [Source:NCBI g... [more]
pde9a1.429e-832.10phosphodiesterase 9A [Source:Xenbase;Acc:XB-GENE-5... [more]
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BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Lima17.978e-1337.50LIM domain and actin binding 1 [Source:MGI Symbol;... [more]
Lima18.645e-1337.50LIM domain and actin binding 1 [Source:MGI Symbol;... [more]
Xirp25.123e-1243.08xin actin-binding repeat containing 2 [Source:MGI ... [more]
Xirp25.184e-1243.08xin actin-binding repeat containing 2 [Source:MGI ... [more]
Xirp26.244e-1243.08xin actin-binding repeat containing 2 [Source:MGI ... [more]
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BLAST of LIM zinc-binding domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|P29675|SF3_HELAN3.482e-1237.66Pollen-specific protein SF3 OS=Helianthus annuus O... [more]
sp|Q9ERG0|LIMA1_MOUSE6.047e-1237.50LIM domain and actin-binding protein 1 OS=Mus musc... [more]
sp|F1LR10|LIMA1_RAT7.877e-1237.84LIM domain and actin-binding protein 1 OS=Rattus n... [more]
sp|Q9UHB6|LIMA1_HUMAN9.249e-1237.50LIM domain and actin-binding protein 1 OS=Homo sap... [more]
sp|B0KYV5|LIMA1_PIG1.090e-1137.84LIM domain and actin-binding protein 1 OS=Sus scro... [more]
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BLAST of LIM zinc-binding domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2G8L1L35.571e-1535.77Putative enolase-phosphatase E1 isoform X5 OS=Stic... [more]
G7YPY51.921e-1432.05LIM domain and actin-binding protein 1 OS=Clonorch... [more]
A0A5N6PGP24.390e-1441.67Uncharacterized protein OS=Mikania micrantha OX=19... [more]
A0A0D2WXB85.709e-1448.44LIMD2 protein OS=Capsaspora owczarzaki (strain ATC... [more]
A0A5N6PFJ96.546e-1441.67Uncharacterized protein OS=Mikania micrantha OX=19... [more]
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BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
lima1a2.631e-1238.46LIM domain and actin binding 1a [Source:ZFIN;Acc:Z... [more]
limd23.040e-1240.00LIM domain containing 2 [Source:NCBI gene;Acc:1030... [more]
csrp31.105e-937.84cysteine and glycine-rich protein 3 (cardiac LIM p... [more]
csrp34.542e-937.33cysteine and glycine-rich protein 3 (cardiac LIM p... [more]
ENSAMXT00000039349.18.115e-936.36pep primary_assembly:Astyanax_mexicanus-2.0:APWO02... [more]
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BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 5
Match NameE-valueIdentityDescription
csrp23.295e-1136.23cysteine and glycine-rich protein 2 [Source:ZFIN;A... [more]
csrp26.738e-1031.25cysteine and glycine-rich protein 2 [Source:ZFIN;A... [more]
csrp29.592e-1035.53cysteine and glycine-rich protein 2 [Source:ZFIN;A... [more]
csrp25.866e-934.52cysteine and glycine-rich protein 2 [Source:ZFIN;A... [more]
mical3b2.584e-634.92Danio rerio microtubule associated monooxygenase, ... [more]
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BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5
Match NameE-valueIdentityDescription
EDO500083.334e-1643.94Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
LASP32.595e-739.29Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
LASP12.895e-739.62Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
LASP21.155e-635.71Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO499378.185e-631.34Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
lima1a8.511e-1340.00LIM domain and actin-binding protein 1 [Source:NCB... [more]
lima1a1.045e-1240.00LIM domain and actin-binding protein 1 [Source:NCB... [more]
lima1a1.117e-1240.00LIM domain and actin-binding protein 1 [Source:NCB... [more]
limd22.866e-1136.92LIM domain containing 2 [Source:NCBI gene;Acc:1011... [more]
ENSORLT00000019196.22.867e-1141.54LIM domain and actin-binding protein 1 [Source:NCB... [more]
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BLAST of LIM zinc-binding domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000040062.10.000e+0100.00SMESG000040062.1[more]
SMESG000001219.11.029e-1848.48SMESG000001219.1[more]
SMESG000044487.11.920e-1446.97SMESG000044487.1[more]
SMESG000026096.11.903e-1239.13SMESG000026096.1[more]
SMESG000072162.11.785e-636.07SMESG000072162.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30007060 ID=SMED30007060|Name=LIM zinc-binding domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1422bp
CTTAAGTAAATTCTAATTTAAGAACTGACCAAATCAAAATTTAGAATAAA
AACGACATTACTGAAATTTTTAAATTTAAGTTGAAATATTCTTGAATAAA
CAAAAATAATTCGTAATAAAATGGATAATATTTTGGACTTGGATATCAAT
AATGAGAATAATAATTACTCAAATAATGATTTCAAGAGTCAGCTTTCACC
AATTGCAATGGAAAACAATTTAATAGACAATGCCAATTATTCTGACACAG
AACTTGATAAAAATGCTTTGATAAATTGTGATTTTTCCGAGGAAATTAAG
ACTGATAAAACTTCAAATGACGAATTGGGAAATAACAATTGTGACTTCAA
TACTGATGATGTGCTGATAAACTTCCAAGATAACCATGATGAAAGTGAGA
AATCGAACGGGGGAAATATTACTCAGGAAGCTGAACAAACCCCTTTTGTA
ATAAAAGAAATTGAGAAATGTCCAAAGCAAAATGATACTGACAATTTTAT
TGTCAAACAATCGGATAGTGAGCATCAAAGTCAATCTAAAAAAACAAAAA
CAAGTTTCCAATCAAAACTTAAAGATCAGAGTAATTCTGATTCGAAATGC
GATGTATGTCAGAAAACTGTTTATCCTATGGAAAAAGTCTCAATGGATTC
TAAACTTTACCATAAAAATTGTTTTCGATGTTGTGTTTGCCAGAAAATGC
TAAGTCCAACTGTTGTGACAAAGTTCAAAGATAATTTATTCTGCAAACCT
CATTATATTGAAAAATTTAGAATTCGAGGGAAATATGATGATATTGGTAT
TGCTACCCCAGCGTCGGATTCAGCAGTCACTTATCAGAATGATTATAAAC
CAGTTATTCAACAAACGACTTATCAATTCTCAAACAGCAGCAGCAGCAGC
AGCAGCAGCAACAACAAAAAAACCGATTATCCTTCCAGTAAGTTTGTAGG
GACCAAGGACTTAGCCTCTCGTTTTCAAGAATCCCCAGACGATCACAGTG
AGGATAATATAGGACGGAAGCAGCCTATTGATATTGGGAGTCAGAGGCGC
GTGTCTGACGCTACAAAGGCTTGGCGGGAAAATCAACAAGAAAGACAAGC
AAATTTTAAAAGAGGGAATTCAAATAACAATAACTCCATTGATTCGGATG
TAAATCAAGTATCCAAAGGATCTGTCAAAAACCTTAAAGCTTTATTCGAA
CAAAGAAATTGATCGGTTCGACTGAACATATTTTACTGTCTATTTGAATT
TGCTCAAAAAACAATTTCCAGATTTCAAGATTTCAATTTGTAAGGAAACA
TATATGCTGTGTTATGTTGAAATATTTTTTTCACAAATATTTATCCGAAC
TTTTCAAGTTTGGTATTTTTCATTTAATTTCCATTATTTCAAGCAAATAT
AATGATTAGCTTTAAAAAAAAA
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protein sequence of SMED30007060-orf-1

>SMED30007060-orf-1 ID=SMED30007060-orf-1|Name=SMED30007060-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=364bp
MDNILDLDINNENNNYSNNDFKSQLSPIAMENNLIDNANYSDTELDKNAL
INCDFSEEIKTDKTSNDELGNNNCDFNTDDVLINFQDNHDESEKSNGGNI
TQEAEQTPFVIKEIEKCPKQNDTDNFIVKQSDSEHQSQSKKTKTSFQSKL
KDQSNSDSKCDVCQKTVYPMEKVSMDSKLYHKNCFRCCVCQKMLSPTVVT
KFKDNLFCKPHYIEKFRIRGKYDDIGIATPASDSAVTYQNDYKPVIQQTT
YQFSNSSSSSSSSNNKKTDYPSSKFVGTKDLASRFQESPDDHSEDNIGRK
QPIDIGSQRRVSDATKAWRENQQERQANFKRGNSNNNNSIDSDVNQVSKG
SVKNLKALFEQRN*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000026gut
PLANA:0000034epidermis
PLANA:0000070intestinal phagocyte
PLANA:0002032epidermal cell
PLANA:0003116parenchymal cell
Vocabulary: INTERPRO
TermDefinition
IPR001781Znf_LIM
Vocabulary: molecular function
TermDefinition
GO:0008270zinc ion binding
GO:0003779actin binding
GO:0005515protein binding
GO:0043426MRF binding
GO:0046872metal ion binding
GO:0061629RNA polymerase II sequence-specific DNA binding transcription factor binding
Vocabulary: biological process
TermDefinition
GO:0001974blood vessel remodeling
GO:0006351transcription, DNA-templated
GO:0006355regulation of transcription, DNA-templated
GO:0007275multicellular organism development
GO:0007517muscle organ development
GO:0010831positive regulation of myotube differentiation
GO:0030154cell differentiation
GO:0051091positive regulation of sequence-specific DNA binding transcription factor activity
Vocabulary: cellular component
TermDefinition
GO:0005634nucleus
GO:0005737cytoplasm
GO:0005856cytoskeleton
GO:0030017sarcomere
GO:0030018Z disc
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001781Zinc finger, LIM-typeSMARTSM00132lim_4coord: 159..211
e-value: 7.0E-11
score: 52.2
IPR001781Zinc finger, LIM-typePFAMPF00412LIMcoord: 160..216
e-value: 7.7E-12
score: 45.3
IPR001781Zinc finger, LIM-typePROSITEPS00478LIM_DOMAIN_1coord: 160..194
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 158..218
score: 12.929
NoneNo IPR availableGENE3DG3DSA:2.10.110.10coord: 152..228
e-value: 4.1E-17
score: 63.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 129..150
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 253..273
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 327..352
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 285..299
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 285..363
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 253..272
NoneNo IPR availablePANTHERPTHR24206:SF35LIM DOMAIN-CONTAINING PROTEIN WLIM1coord: 152..225
coord: 157..274
NoneNo IPR availablePANTHERPTHR24206FAMILY NOT NAMEDcoord: 152..225
coord: 157..274
NoneNo IPR availableCDDcd09358LIM_Mical_likecoord: 160..212
e-value: 4.5176E-23
score: 88.8649
NoneNo IPR availableSUPERFAMILYSSF57716Glucocorticoid receptor-like (DNA-binding domain)coord: 186..227
NoneNo IPR availableSUPERFAMILYSSF57716Glucocorticoid receptor-like (DNA-binding domain)coord: 154..185