SMED30007056

Overview
NameSMED30007056
Smed IDSMED30007056
Length (bp)390
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30007056 (SMED30007056) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30007056 (SMED30007056) in cells (dots) of each of the 12 neoblast clusters.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30007056

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 12

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30007056h1SMcG0000290 SmedASXL_004439SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
X1 cellSMED30007056h1SMcG0000290 SmedASXL_019869SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
X1 cellSMED30007056h1SMcG0000290 SmedASXL_003018SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
X1 cellSMED30007056h1SMcG0000290 SmedASXL_001008SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
gutSMED30007056h1SMcG0000290 dd_Smed_v4_22938_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30007056h1SMcG0000290 dd_Smed_v4_22938_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
zeta neoblastSMED30007056h1SMcG0000290 dd_Smed_v4_39554_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017
whole organism asexual adult single-cell RNA-sequencing evidence
zeta neoblastSMED30007056h1SMcG0000290 dd_Smed_v4_12726_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017
whole organism asexual adult single-cell RNA-sequencing evidence
zeta neoblastSMED30007056h1SMcG0000290 dd_Smed_v4_35838_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017
whole organism asexual adult single-cell RNA-sequencing evidence
zeta neoblastSMED30007056h1SMcG0000290 dd_Smed_v4_22938_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017
whole organism asexual adult single-cell RNA-sequencing evidence
neoblastSMED30007056h1SMcG0000290 SMED_05003_V2_1GPL14150PMID:22385657
Wagner et al., 2012
whole organism asexual adult cDNA to DNA expression microarray evidence
neoblastSMED30007056h1SMcG0000290 SMED_05003_V2_1GPL14150_gene_modelsPMID:22385657
Wagner et al., 2012
whole organism asexual adult cDNA to DNA expression microarray evidence
Note: Hover over icons to view figure legend
Alignments
SMED30007056 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.001732:6747..7136 -1950
v31.001732:6061..6431 -695
v31.001732:7158..7524 -568
v31.001732:6360..6725 -525
v31.001732:5634..5999 -506
Homology
BLAST of SMED30007056 vs. Planmine SMEST
Match: SMESG000065696.1 (SMESG000065696.1)

HSP 1 Score: 205.682 bits (522), Expect = 2.811e-62
Identity = 112/129 (86.82%), Postives = 113/129 (87.60%), Query Frame = 3
Query:    3 ISNEFIENRNQSNIIDSGLINKSQSSKRSFQSNKTFVLRNSIPNENPEMLSKLPHTNSAFREMQSISLNENSSKTNDIINNSHPLINLDSERSILSEIPPKLPPINSSSIDIQHLSNRSPVDNSSVIPE 389
            ISNEFIENRNQSNIIDSGLINKSQSSKRSFQSNKTFVLRNSIPNENPEMLSKLPHTNSAFREMQSISLNENS                +SERSILSEIPPKLPPINSSSIDIQHLSNRSPVDNSSVIPE
Sbjct:  259 ISNEFIENRNQSNIIDSGLINKSQSSKRSFQSNKTFVLRNSIPNENPEMLSKLPHTNSAFREMQSISLNENS----------------NSERSILSEIPPKLPPINSSSIDIQHLSNRSPVDNSSVIPE 371          

HSP 2 Score: 182.57 bits (462), Expect = 3.043e-54
Identity = 106/142 (74.65%), Postives = 112/142 (78.87%), Query Frame = 3
Query:    3 ISNEFIENRNQSNIIDSGLINKSQSSKRSFQSNKTFVLRNS----------IPNENPEMLSKLPHTNSAFREMQSISLNENSSKTNDIINNSHPLINLDSERSILSEIPP---KLPPINSSSIDIQHLSNRSPVDNSSVIPE 389
            ISNEFIENRNQSNIIDSGLINKSQSSKRSFQSNKTFVLRNS          IPNENPE+  KL   NS FREMQSI LNEN SK NDIINNSHPLINLDSERSILSEIP     L PINSS I+I+ LS +SPV NS ++PE
Sbjct:  478 ISNEFIENRNQSNIIDSGLINKSQSSKRSFQSNKTFVLRNSDEGQNVADKSIPNENPEITYKLSRENSTFREMQSIRLNENPSKINDIINNSHPLINLDSERSILSEIPEIISILSPINSSGIEIETLSEQSPVKNSLLLPE 619          

HSP 3 Score: 90.5077 bits (223), Expect = 4.782e-22
Identity = 64/129 (49.61%), Postives = 72/129 (55.81%), Query Frame = 3
Query:    3 ISNEFIENRNQSNIIDSGLINKSQSSKRSFQSNKTFVLRNSIPNENPEMLSKLPHTNSAFREMQSISLNENSSKTNDIINNSHPLINLDSERSILSEIPPKLPPINSSSIDIQHLSNRSPVDNSSVIPE 389
            ISNEFIEN NQSNI DS LINKSQ+S R  +S+KTFVL N+   +N    S +    + +REM                                   P KL PINSSSIDIQHLSNRSPVDNSSVIPE
Sbjct:  380 ISNEFIENLNQSNINDSVLINKSQTSIRYLESDKTFVLSNAEDGQNIADKSII----NEYREM-----------------------------------PSKLSPINSSSIDIQHLSNRSPVDNSSVIPE 469          

HSP 4 Score: 67.3958 bits (163), Expect = 7.239e-14
Identity = 69/157 (43.95%), Postives = 91/157 (57.96%), Query Frame = 3
Query:    3 ISNEFIENRNQSNIIDSGLINKSQSSKRSFQSNKTFVLRN---------SIPNENPEMLSKLPHTNSAFREMQSIS-LNENSSKTN----DIIN-------------NSHPLINLD-SERSILSEIPPKLPPINSSSIDIQHLSNRSPVDNSSVIPE 389
            ISNEFIEN NQS+IIDS LIN SQ+S R  +S+KTFVL N         SI NE  E+ S L   +S+  E+Q++S   EN +++N     IIN             N   L N + + +SI++E    L  I+SS I+I  L+ +S VDNSSVIPE
Sbjct:  706 ISNEFIENLNQSDIIDSVLINNSQTSIRYLESDKTFVLSNAEDKNIADQSIINEISEIPSNLSSIDSSSVEIQALSEFIENRNQSNIDGSVIINEFQLPMECSGSNTNEPGLANHNIANKSIINENQSNLSSIDSSGIEILALTEQSQVDNSSVIPE 862          

HSP 5 Score: 66.6254 bits (161), Expect = 1.026e-13
Identity = 76/180 (42.22%), Postives = 96/180 (53.33%), Query Frame = 3
Query:    3 ISNEFIENRNQSNIIDSGLINKSQSSKRSFQSNKTFVLRN----------SIPNENPEMLSKLPHTN----------SAFREMQSIS------LNENSSKTNDIINNSHPLIN-LDSERSI------------------LSEIPPKLPPINSSSIDIQHLS------NRSPVDNSSVIPE 389
            ISNEFIE RNQSNIIDS LINKSQ+S R  +S+KTFVL N          SI NEN +M SKL H N          S F E +SIS      LN++    + +INNS   I  L+S+++                   +SEIP  L  I+SSS++IQ LS      N+S +D S +I E
Sbjct:  622 ISNEFIEYRNQSNIIDSVLINKSQTSIRYSESDKTFVLSNAEDGQNISDKSIINENSKMSSKLSHKNLSNKSQVDNSSVFPE-KSISNEFIENLNQSDIIDSVLINNSQTSIRYLESDKTFVLSNAEDKNIADQSIINEISEIPSNLSSIDSSSVEIQALSEFIENRNQSNIDGSVIINE 800          

HSP 6 Score: 66.6254 bits (161), Expect = 1.098e-13
Identity = 41/65 (63.08%), Postives = 51/65 (78.46%), Query Frame = 3
Query:  201 SLNENSSKTNDIINNSH-PLINLDSERSILSE-IPPKLPPINSSSIDIQHLSNRSPVDNSSVIPE 389
            S+ EN S    IINN +  L  +++++SI++E +P KL PINSSSIDIQHLSNRSPVDNSSVIPE
Sbjct:  186 SILENCSIDKSIINNYYIDLHKINADKSIINENMPSKLHPINSSSIDIQHLSNRSPVDNSSVIPE 250          
BLAST of SMED30007056 vs. Planmine SMEST
Match: SMESG000065696.1 (SMESG000065696.1)

HSP 1 Score: 205.682 bits (522), Expect = 2.811e-62
Identity = 112/129 (86.82%), Postives = 113/129 (87.60%), Query Frame = 3
Query:    3 ISNEFIENRNQSNIIDSGLINKSQSSKRSFQSNKTFVLRNSIPNENPEMLSKLPHTNSAFREMQSISLNENSSKTNDIINNSHPLINLDSERSILSEIPPKLPPINSSSIDIQHLSNRSPVDNSSVIPE 389
            ISNEFIENRNQSNIIDSGLINKSQSSKRSFQSNKTFVLRNSIPNENPEMLSKLPHTNSAFREMQSISLNENS                +SERSILSEIPPKLPPINSSSIDIQHLSNRSPVDNSSVIPE
Sbjct:  260 ISNEFIENRNQSNIIDSGLINKSQSSKRSFQSNKTFVLRNSIPNENPEMLSKLPHTNSAFREMQSISLNENS----------------NSERSILSEIPPKLPPINSSSIDIQHLSNRSPVDNSSVIPE 372          

HSP 2 Score: 182.57 bits (462), Expect = 2.899e-54
Identity = 106/142 (74.65%), Postives = 112/142 (78.87%), Query Frame = 3
Query:    3 ISNEFIENRNQSNIIDSGLINKSQSSKRSFQSNKTFVLRNS----------IPNENPEMLSKLPHTNSAFREMQSISLNENSSKTNDIINNSHPLINLDSERSILSEIPP---KLPPINSSSIDIQHLSNRSPVDNSSVIPE 389
            ISNEFIENRNQSNIIDSGLINKSQSSKRSFQSNKTFVLRNS          IPNENPE+  KL   NS FREMQSI LNEN SK NDIINNSHPLINLDSERSILSEIP     L PINSS I+I+ LS +SPV NS ++PE
Sbjct:  479 ISNEFIENRNQSNIIDSGLINKSQSSKRSFQSNKTFVLRNSDEGQNVADKSIPNENPEITYKLSRENSTFREMQSIRLNENPSKINDIINNSHPLINLDSERSILSEIPEIISILSPINSSGIEIETLSEQSPVKNSLLLPE 620          

HSP 3 Score: 90.5077 bits (223), Expect = 4.645e-22
Identity = 64/129 (49.61%), Postives = 72/129 (55.81%), Query Frame = 3
Query:    3 ISNEFIENRNQSNIIDSGLINKSQSSKRSFQSNKTFVLRNSIPNENPEMLSKLPHTNSAFREMQSISLNENSSKTNDIINNSHPLINLDSERSILSEIPPKLPPINSSSIDIQHLSNRSPVDNSSVIPE 389
            ISNEFIEN NQSNI DS LINKSQ+S R  +S+KTFVL N+   +N    S +    + +REM                                   P KL PINSSSIDIQHLSNRSPVDNSSVIPE
Sbjct:  381 ISNEFIENLNQSNINDSVLINKSQTSIRYLESDKTFVLSNAEDGQNIADKSII----NEYREM-----------------------------------PSKLSPINSSSIDIQHLSNRSPVDNSSVIPE 470          

HSP 4 Score: 67.3958 bits (163), Expect = 7.170e-14
Identity = 69/157 (43.95%), Postives = 91/157 (57.96%), Query Frame = 3
Query:    3 ISNEFIENRNQSNIIDSGLINKSQSSKRSFQSNKTFVLRN---------SIPNENPEMLSKLPHTNSAFREMQSIS-LNENSSKTN----DIIN-------------NSHPLINLD-SERSILSEIPPKLPPINSSSIDIQHLSNRSPVDNSSVIPE 389
            ISNEFIEN NQS+IIDS LIN SQ+S R  +S+KTFVL N         SI NE  E+ S L   +S+  E+Q++S   EN +++N     IIN             N   L N + + +SI++E    L  I+SS I+I  L+ +S VDNSSVIPE
Sbjct:  707 ISNEFIENLNQSDIIDSVLINNSQTSIRYLESDKTFVLSNAEDKNIADQSIINEISEIPSNLSSIDSSSVEIQALSEFIENRNQSNIDGSVIINEFQLPMECSGSNTNEPGLANHNIANKSIINENQSNLSSIDSSGIEILALTEQSQVDNSSVIPE 863          

HSP 5 Score: 67.0106 bits (162), Expect = 9.775e-14
Identity = 76/180 (42.22%), Postives = 96/180 (53.33%), Query Frame = 3
Query:    3 ISNEFIENRNQSNIIDSGLINKSQSSKRSFQSNKTFVLRN----------SIPNENPEMLSKLPHTN----------SAFREMQSIS------LNENSSKTNDIINNSHPLIN-LDSERSI------------------LSEIPPKLPPINSSSIDIQHLS------NRSPVDNSSVIPE 389
            ISNEFIE RNQSNIIDS LINKSQ+S R  +S+KTFVL N          SI NEN +M SKL H N          S F E +SIS      LN++    + +INNS   I  L+S+++                   +SEIP  L  I+SSS++IQ LS      N+S +D S +I E
Sbjct:  623 ISNEFIEYRNQSNIIDSVLINKSQTSIRYSESDKTFVLSNAEDGQNISDKSIINENSKMSSKLSHKNLSNKSQVDNSSVFPE-KSISNEFIENLNQSDIIDSVLINNSQTSIRYLESDKTFVLSNAEDKNIADQSIINEISEIPSNLSSIDSSSVEIQALSEFIENRNQSNIDGSVIINE 801          

HSP 6 Score: 66.6254 bits (161), Expect = 1.087e-13
Identity = 41/65 (63.08%), Postives = 51/65 (78.46%), Query Frame = 3
Query:  201 SLNENSSKTNDIINNSH-PLINLDSERSILSE-IPPKLPPINSSSIDIQHLSNRSPVDNSSVIPE 389
            S+ EN S    IINN +  L  +++++SI++E +P KL PINSSSIDIQHLSNRSPVDNSSVIPE
Sbjct:  187 SILENCSIDKSIINNYYIDLHKINADKSIINENMPSKLHPINSSSIDIQHLSNRSPVDNSSVIPE 251          
BLAST of SMED30007056 vs. Planmine SMEST
Match: SMESG000065696.1 (SMESG000065696.1)

HSP 1 Score: 205.682 bits (522), Expect = 2.811e-62
Identity = 112/129 (86.82%), Postives = 113/129 (87.60%), Query Frame = 3
Query:    3 ISNEFIENRNQSNIIDSGLINKSQSSKRSFQSNKTFVLRNSIPNENPEMLSKLPHTNSAFREMQSISLNENSSKTNDIINNSHPLINLDSERSILSEIPPKLPPINSSSIDIQHLSNRSPVDNSSVIPE 389
            ISNEFIENRNQSNIIDSGLINKSQSSKRSFQSNKTFVLRNSIPNENPEMLSKLPHTNSAFREMQSISLNENS                +SERSILSEIPPKLPPINSSSIDIQHLSNRSPVDNSSVIPE
Sbjct:  264 ISNEFIENRNQSNIIDSGLINKSQSSKRSFQSNKTFVLRNSIPNENPEMLSKLPHTNSAFREMQSISLNENS----------------NSERSILSEIPPKLPPINSSSIDIQHLSNRSPVDNSSVIPE 376          

HSP 2 Score: 182.57 bits (462), Expect = 3.014e-54
Identity = 106/142 (74.65%), Postives = 112/142 (78.87%), Query Frame = 3
Query:    3 ISNEFIENRNQSNIIDSGLINKSQSSKRSFQSNKTFVLRNS----------IPNENPEMLSKLPHTNSAFREMQSISLNENSSKTNDIINNSHPLINLDSERSILSEIPP---KLPPINSSSIDIQHLSNRSPVDNSSVIPE 389
            ISNEFIENRNQSNIIDSGLINKSQSSKRSFQSNKTFVLRNS          IPNENPE+  KL   NS FREMQSI LNEN SK NDIINNSHPLINLDSERSILSEIP     L PINSS I+I+ LS +SPV NS ++PE
Sbjct:  483 ISNEFIENRNQSNIIDSGLINKSQSSKRSFQSNKTFVLRNSDEGQNVADKSIPNENPEITYKLSRENSTFREMQSIRLNENPSKINDIINNSHPLINLDSERSILSEIPEIISILSPINSSGIEIETLSEQSPVKNSLLLPE 624          

HSP 3 Score: 90.5077 bits (223), Expect = 4.782e-22
Identity = 64/129 (49.61%), Postives = 72/129 (55.81%), Query Frame = 3
Query:    3 ISNEFIENRNQSNIIDSGLINKSQSSKRSFQSNKTFVLRNSIPNENPEMLSKLPHTNSAFREMQSISLNENSSKTNDIINNSHPLINLDSERSILSEIPPKLPPINSSSIDIQHLSNRSPVDNSSVIPE 389
            ISNEFIEN NQSNI DS LINKSQ+S R  +S+KTFVL N+   +N    S +    + +REM                                   P KL PINSSSIDIQHLSNRSPVDNSSVIPE
Sbjct:  385 ISNEFIENLNQSNINDSVLINKSQTSIRYLESDKTFVLSNAEDGQNIADKSII----NEYREM-----------------------------------PSKLSPINSSSIDIQHLSNRSPVDNSSVIPE 474          

HSP 4 Score: 67.3958 bits (163), Expect = 7.240e-14
Identity = 69/157 (43.95%), Postives = 91/157 (57.96%), Query Frame = 3
Query:    3 ISNEFIENRNQSNIIDSGLINKSQSSKRSFQSNKTFVLRN---------SIPNENPEMLSKLPHTNSAFREMQSIS-LNENSSKTN----DIIN-------------NSHPLINLD-SERSILSEIPPKLPPINSSSIDIQHLSNRSPVDNSSVIPE 389
            ISNEFIEN NQS+IIDS LIN SQ+S R  +S+KTFVL N         SI NE  E+ S L   +S+  E+Q++S   EN +++N     IIN             N   L N + + +SI++E    L  I+SS I+I  L+ +S VDNSSVIPE
Sbjct:  711 ISNEFIENLNQSDIIDSVLINNSQTSIRYLESDKTFVLSNAEDKNIADQSIINEISEIPSNLSSIDSSSVEIQALSEFIENRNQSNIDGSVIINEFQLPMECSGSNTNEPGLANHNIANKSIINENQSNLSSIDSSGIEILALTEQSQVDNSSVIPE 867          

HSP 5 Score: 66.6254 bits (161), Expect = 1.046e-13
Identity = 76/180 (42.22%), Postives = 96/180 (53.33%), Query Frame = 3
Query:    3 ISNEFIENRNQSNIIDSGLINKSQSSKRSFQSNKTFVLRN----------SIPNENPEMLSKLPHTN----------SAFREMQSIS------LNENSSKTNDIINNSHPLIN-LDSERSI------------------LSEIPPKLPPINSSSIDIQHLS------NRSPVDNSSVIPE 389
            ISNEFIE RNQSNIIDS LINKSQ+S R  +S+KTFVL N          SI NEN +M SKL H N          S F E +SIS      LN++    + +INNS   I  L+S+++                   +SEIP  L  I+SSS++IQ LS      N+S +D S +I E
Sbjct:  627 ISNEFIEYRNQSNIIDSVLINKSQTSIRYSESDKTFVLSNAEDGQNISDKSIINENSKMSSKLSHKNLSNKSQVDNSSVFPE-KSISNEFIENLNQSDIIDSVLINNSQTSIRYLESDKTFVLSNAEDKNIADQSIINEISEIPSNLSSIDSSSVEIQALSEFIENRNQSNIDGSVIINE 805          

HSP 6 Score: 66.6254 bits (161), Expect = 1.109e-13
Identity = 41/65 (63.08%), Postives = 51/65 (78.46%), Query Frame = 3
Query:  201 SLNENSSKTNDIINNSH-PLINLDSERSILSE-IPPKLPPINSSSIDIQHLSNRSPVDNSSVIPE 389
            S+ EN S    IINN +  L  +++++SI++E +P KL PINSSSIDIQHLSNRSPVDNSSVIPE
Sbjct:  191 SILENCSIDKSIINNYYIDLHKINADKSIINENMPSKLHPINSSSIDIQHLSNRSPVDNSSVIPE 255          
The following BLAST results are available for this feature:
BLAST of SMED30007056 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007056 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007056 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007056 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007056 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007056 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007056 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007056 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007056 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007056 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007056 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007056 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007056 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30007056 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3
Match NameE-valueIdentityDescription
SMESG000065696.12.811e-6286.82SMESG000065696.1[more]
SMESG000065696.12.811e-6286.82SMESG000065696.1[more]
SMESG000065696.12.811e-6286.82SMESG000065696.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30007056 ID=SMED30007056|Name=SMED30007056|organism=Schmidtea mediterranea sexual|type=transcript|length=390bp
CAATTTCCAATGAATTTATTGAAAATCGAAATCAATCGAATATTATTGAC
TCAGGACTGATCAATAAATCGCAATCATCAAAGCGATCTTTTCAATCCAA
TAAAACGTTTGTATTGCGTAATTCAATTCCAAATGAAAACCCAGAAATGC
TATCAAAATTGCCCCACACAAATTCTGCTTTTAGAGAAATGCAGTCCATT
AGTTTGAATGAGAACTCCAGTAAAACAAATGATATAATCAATAATTCACA
TCCACTAATCAATCTAGATTCTGAAAGATCGATTTTATCTGAAATTCCAC
CAAAATTGCCCCCAATAAATTCATCTAGTATCGACATTCAACATTTATCC
AATAGATCACCGGTTGACAATTCCTCAGTTATTCCTGAAA
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protein sequence of SMED30007056-orf-1

>SMED30007056-orf-1 ID=SMED30007056-orf-1|Name=SMED30007056-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=129bp
ISNEFIENRNQSNIIDSGLINKSQSSKRSFQSNKTFVLRNSIPNENPEML
SKLPHTNSAFREMQSISLNENSSKTNDIINNSHPLINLDSERSILSEIPP
KLPPINSSSIDIQHLSNRSPVDNSSVIPE
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InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 107..129